FFCP PHASE1:Hg19::chr4:79697495..79697538,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55589 | |EntrezGene=55589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18041 | |HGNC=18041 | ||
|TSSclassifier=strong | |||
|UniProt=C9JC56,Q9NSY1,Q4W5H2 | |UniProt=C9JC56,Q9NSY1,Q4W5H2 | ||
|association_with_transcript=0bp_to_ENST00000264889,ENST00000335016,ENST00000389010,ENST00000502871,NM_017593,NM_198892,uc003hlj.2,uc003hlk.2,uc010ijl.1_5end | |association_with_transcript=0bp_to_ENST00000264889,ENST00000335016,ENST00000389010,ENST00000502871,NM_017593,NM_198892,uc003hlj.2,uc003hlk.2,uc010ijl.1_5end | ||
|cluster_id=chr4:79697495..79697538,+ | |||
|coexpression_cluster_id=C3217 | |coexpression_cluster_id=C3217 | ||
|description=CAGE_peak_1_at_BMP2K_5end | |description=CAGE_peak_1_at_BMP2K_5end | ||
|id=chr4:79697495..79697538,+ | |id=chr4:79697495..79697538,+ | ||
|ontology_enrichment_celltype=CL:0000763!1.46e-31!112;CL:0000049!1.46e-31!112;CL:0002032!5.19e-22!165;CL:0000837!5.19e-22!165;CL:0000037!6.04e-21!172;CL:0000566!6.04e-21!172;CL:0000557!1.17e-20!71;CL:0000839!1.30e-20!70;CL:0000766!2.92e-20!76;CL:0002009!4.58e-17!65;CL:0000988!2.16e-16!182;CL:0002194!2.24e-16!63;CL:0000576!2.24e-16!63;CL:0000040!2.24e-16!63;CL:0000559!2.24e-16!63;CL:0002057!1.30e-13!42;CL:0000738!2.62e-13!140;CL:0002031!1.17e-12!124;CL:0000134!1.56e-11!358;CL:0000860!4.38e-11!45;CL:0002320!5.20e-10!365;CL:0002087!3.89e-09!119;CL:0000048!2.60e-08!430;CL:0000723!8.62e-08!436;CL:0000034!1.00e-07!444;CL:0000219!1.57e-07!390;CL:0000945!1.89e-07!24;CL:0000826!1.89e-07!24 | |ontology_enrichment_celltype=CL:0000763!1.46e-31!112;CL:0000049!1.46e-31!112;CL:0002032!5.19e-22!165;CL:0000837!5.19e-22!165;CL:0000037!6.04e-21!172;CL:0000566!6.04e-21!172;CL:0000557!1.17e-20!71;CL:0000839!1.30e-20!70;CL:0000766!2.92e-20!76;CL:0002009!4.58e-17!65;CL:0000988!2.16e-16!182;CL:0002194!2.24e-16!63;CL:0000576!2.24e-16!63;CL:0000040!2.24e-16!63;CL:0000559!2.24e-16!63;CL:0002057!1.30e-13!42;CL:0000738!2.62e-13!140;CL:0002031!1.17e-12!124;CL:0000134!1.56e-11!358;CL:0000860!4.38e-11!45;CL:0002320!5.20e-10!365;CL:0002087!3.89e-09!119;CL:0000048!2.60e-08!430;CL:0000723!8.62e-08!436;CL:0000034!1.00e-07!444;CL:0000219!1.57e-07!390;CL:0000945!1.89e-07!24;CL:0000826!1.89e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000473;5.03e-15;39!CL:0000234;5.03e-15;39!CL:0000860;3.22e-14;33!CL:0002057;3.22e-14;33!CL:0000576;1.14e-10;48!CL:0000763;3.88e-10;100!CL:0000766;8.48e-10;69!CL:0000945;2.56e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.08e-34,108;CL:0000049,2.08e-34,108;CL:0002032,9.85e-24,161;CL:0000837,9.85e-24,161;CL:0000557,1.37e-23,67;CL:0000839,1.43e-23,66;CL:0000766,5.20e-23,72;CL:0000037,1.44e-22,168;CL:0002009,8.65e-20,61;CL:0002194,4.41e-19,59;CL:0000576,4.41e-19,59;CL:0000040,4.41e-19,59;CL:0000559,4.41e-19,59;CL:0000988,7.90e-18,177;CL:0000473,4.18e-17,48;CL:0000234,4.18e-17,48;CL:0000738,1.12e-14,136;CL:0002031,4.35e-14,120;CL:0000860,1.30e-13,42;CL:0002057,1.30e-13,42;CL:0000134,2.20e-12,354;CL:0002320,8.64e-11,361;CL:0002087,2.60e-10,115;CL:0000048,4.34e-09,427;CL:0000723,1.54e-08,433;CL:0000034,1.81e-08,441;CL:0000219,3.55e-08,386;CL:0000945,1.89e-07,24;CL:0000826,1.89e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;3.68e-10;42!CL:0000049;7.17e-10;108 | |||
|ontology_enrichment_disease=DOID:8692!6.75e-08!31 | |ontology_enrichment_disease=DOID:8692!6.75e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.31e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,6.75e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0002193!5.59e-21!112;UBERON:0002390!3.47e-19!102;UBERON:0003061!3.47e-19!102;UBERON:0002371!4.06e-17!80;UBERON:0002405!1.25e-16!115;UBERON:0001474!2.50e-15!86;UBERON:0007023!1.98e-14!115;UBERON:0004765!7.58e-14!101;UBERON:0001434!7.58e-14!101;UBERON:0002384!2.21e-09!375;UBERON:0003081!1.86e-07!216;UBERON:0002204!6.17e-07!167 | |ontology_enrichment_uberon=UBERON:0002193!5.59e-21!112;UBERON:0002390!3.47e-19!102;UBERON:0003061!3.47e-19!102;UBERON:0002371!4.06e-17!80;UBERON:0002405!1.25e-16!115;UBERON:0001474!2.50e-15!86;UBERON:0007023!1.98e-14!115;UBERON:0004765!7.58e-14!101;UBERON:0001434!7.58e-14!101;UBERON:0002384!2.21e-09!375;UBERON:0003081!1.86e-07!216;UBERON:0002204!6.17e-07!167 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.98e-23,108;UBERON:0002405,4.55e-22,93;UBERON:0002390,2.44e-21,98;UBERON:0003061,2.44e-21,98;UBERON:0002371,1.80e-19,76;UBERON:0001474,2.13e-17,82;UBERON:0007023,3.49e-14,114;UBERON:0004765,3.84e-14,90;UBERON:0001434,4.27e-14,100;UBERON:0002384,3.99e-10,371;UBERON:0003081,3.41e-09,203;UBERON:0002204,3.88e-07,167 | |||
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2 | ||
|short_description=p1@BMP2K | |short_description=p1@BMP2K | ||
}} | }} |
Latest revision as of 20:54, 18 September 2015
Short description: | p1@BMP2K |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BMP2K_5end |
Coexpression cluster: | C3217_Mast_Macrophage_acute_Reticulocytes_CD14_granulocyte_Monocytederived |
Association with transcript: | 0bp_to_ENST00000264889, ENST00000335016, ENST00000389010, ENST00000502871, NM_017593, NM_198892, uc003hlj.2, uc003hlk.2, uc010ijl.1_5end |
EntrezGene: | BMP2K |
HGNC: | 18041 |
UniProt: | C9JC56Q9NSY1Q4W5H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.08e-34 | 108 |
common myeloid progenitor | 2.08e-34 | 108 |
hematopoietic oligopotent progenitor cell | 9.85e-24 | 161 |
hematopoietic multipotent progenitor cell | 9.85e-24 | 161 |
granulocyte monocyte progenitor cell | 1.37e-23 | 67 |
myeloid lineage restricted progenitor cell | 1.43e-23 | 66 |
myeloid leukocyte | 5.20e-23 | 72 |
hematopoietic stem cell | 1.44e-22 | 168 |
macrophage dendritic cell progenitor | 8.65e-20 | 61 |
monopoietic cell | 4.41e-19 | 59 |
monocyte | 4.41e-19 | 59 |
monoblast | 4.41e-19 | 59 |
promonocyte | 4.41e-19 | 59 |
hematopoietic cell | 7.90e-18 | 177 |
defensive cell | 4.18e-17 | 48 |
phagocyte | 4.18e-17 | 48 |
leukocyte | 1.12e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 4.35e-14 | 120 |
classical monocyte | 1.30e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.30e-13 | 42 |
mesenchymal cell | 2.20e-12 | 354 |
connective tissue cell | 8.64e-11 | 361 |
nongranular leukocyte | 2.60e-10 | 115 |
multi fate stem cell | 4.34e-09 | 427 |
somatic stem cell | 1.54e-08 | 433 |
stem cell | 1.81e-08 | 441 |
motile cell | 3.55e-08 | 386 |
lymphocyte of B lineage | 1.89e-07 | 24 |
pro-B cell | 1.89e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.98e-23 | 108 |
immune system | 4.55e-22 | 93 |
hematopoietic system | 2.44e-21 | 98 |
blood island | 2.44e-21 | 98 |
bone marrow | 1.80e-19 | 76 |
bone element | 2.13e-17 | 82 |
adult organism | 3.49e-14 | 114 |
skeletal element | 3.84e-14 | 90 |
skeletal system | 4.27e-14 | 100 |
connective tissue | 3.99e-10 | 371 |
lateral plate mesoderm | 3.41e-09 | 203 |
musculoskeletal system | 3.88e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.75e-08 | 31 |