FF:11566-120D9: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Mast cell, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12593
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	41 years old adult
sex	female
age	76
cell type	mast cell
cell line	NA
company	NA
collaboration	Sven Guhl (Charite Germany)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	BsMC-T
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005069

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12593		CAGE		DRX008333		DRR009205

Accession ID Hg19

Library id		BAM		CTSS
CNhs12593		DRZ000630		DRZ002015

Accession ID Hg38

Library id		BAM		CTSS
CNhs12593		DRZ011980		DRZ013365

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005069

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.AGTTCC		sRNA-Seq		DRX037237		DRR041603

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.AGTTCC		DRZ007245

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0.899
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0585
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0585
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0.676
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.198
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0126
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0271
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.128
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.413
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0.11
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.635
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0.0585
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.41
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.463
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0585
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0658
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.333
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.11
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0585
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.243
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.661
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.48
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	1.177
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.112
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.581
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.792
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.287
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.00905
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.972
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.541
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0585
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.318
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.198
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.333
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0.303
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.303
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0585
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12593

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0329
MA0003.1	MA0003.1	0.525
MA0004.1	MA0004.1	0.83
MA0006.1	MA0006.1	0.92
MA0007.1	MA0007.1	0.18
MA0009.1	MA0009.1	0.117
MA0014.1	MA0014.1	0.855
MA0017.1	MA0017.1	0.0376
MA0018.2	MA0018.2	2.05499e-10
MA0019.1	MA0019.1	0.282
MA0024.1	MA0024.1	0.629
MA0025.1	MA0025.1	7.46114e-4
MA0027.1	MA0027.1	0.939
MA0028.1	MA0028.1	0.109
MA0029.1	MA0029.1	0.0124
MA0030.1	MA0030.1	8.5122e-5
MA0031.1	MA0031.1	0.0328
MA0035.2	MA0035.2	1.87395e-7
MA0038.1	MA0038.1	0.00942
MA0039.2	MA0039.2	0.112
MA0040.1	MA0040.1	0.57
MA0041.1	MA0041.1	0.463
MA0042.1	MA0042.1	0.169
MA0043.1	MA0043.1	1.96753e-7
MA0046.1	MA0046.1	0.793
MA0047.2	MA0047.2	0.267
MA0048.1	MA0048.1	0.554
MA0050.1	MA0050.1	0.573
MA0051.1	MA0051.1	0.779
MA0052.1	MA0052.1	0.00813
MA0055.1	MA0055.1	0.46
MA0057.1	MA0057.1	0.191
MA0058.1	MA0058.1	0.98
MA0059.1	MA0059.1	0.0228
MA0060.1	MA0060.1	0.612
MA0061.1	MA0061.1	1.54939e-11
MA0062.2	MA0062.2	6.92424e-7
MA0065.2	MA0065.2	0.0502
MA0066.1	MA0066.1	0.197
MA0067.1	MA0067.1	5.94452e-8
MA0068.1	MA0068.1	4.79623e-4
MA0069.1	MA0069.1	0.886
MA0070.1	MA0070.1	0.424
MA0071.1	MA0071.1	0.417
MA0072.1	MA0072.1	0.495
MA0073.1	MA0073.1	0.377
MA0074.1	MA0074.1	0.682
MA0076.1	MA0076.1	0.0835
MA0077.1	MA0077.1	0.312
MA0078.1	MA0078.1	0.705
MA0079.2	MA0079.2	0.00663
MA0080.2	MA0080.2	3.08809e-12
MA0081.1	MA0081.1	3.82155e-4
MA0083.1	MA0083.1	0.658
MA0084.1	MA0084.1	0.518
MA0087.1	MA0087.1	0.76
MA0088.1	MA0088.1	0.0146
MA0090.1	MA0090.1	0.00248
MA0091.1	MA0091.1	0.424
MA0092.1	MA0092.1	0.377
MA0093.1	MA0093.1	0.823
MA0099.2	MA0099.2	1.65572e-5
MA0100.1	MA0100.1	0.36
MA0101.1	MA0101.1	8.97473e-13
MA0102.2	MA0102.2	0.247
MA0103.1	MA0103.1	0.0019
MA0104.2	MA0104.2	0.0598
MA0105.1	MA0105.1	1.9162e-4
MA0106.1	MA0106.1	0.0111
MA0107.1	MA0107.1	3.17301e-13
MA0108.2	MA0108.2	0.0524
MA0111.1	MA0111.1	0.378
MA0112.2	MA0112.2	0.153
MA0113.1	MA0113.1	0.0815
MA0114.1	MA0114.1	0.0279
MA0115.1	MA0115.1	0.832
MA0116.1	MA0116.1	0.0397
MA0117.1	MA0117.1	0.0219
MA0119.1	MA0119.1	0.0238
MA0122.1	MA0122.1	0.421
MA0124.1	MA0124.1	0.687
MA0125.1	MA0125.1	0.189
MA0131.1	MA0131.1	0.0626
MA0135.1	MA0135.1	0.284
MA0136.1	MA0136.1	2.63305e-12
MA0137.2	MA0137.2	0.0871
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.677
MA0140.1	MA0140.1	5.81731e-5
MA0141.1	MA0141.1	0.0549
MA0142.1	MA0142.1	0.127
MA0143.1	MA0143.1	0.731
MA0144.1	MA0144.1	0.243
MA0145.1	MA0145.1	0.768
MA0146.1	MA0146.1	0.184
MA0147.1	MA0147.1	0.00612
MA0148.1	MA0148.1	0.418
MA0149.1	MA0149.1	0.453
MA0150.1	MA0150.1	0.0981
MA0152.1	MA0152.1	0.106
MA0153.1	MA0153.1	0.244
MA0154.1	MA0154.1	0.913
MA0155.1	MA0155.1	0.98
MA0156.1	MA0156.1	4.17578e-6
MA0157.1	MA0157.1	0.672
MA0159.1	MA0159.1	0.256
MA0160.1	MA0160.1	0.425
MA0162.1	MA0162.1	0.0261
MA0163.1	MA0163.1	0.393
MA0164.1	MA0164.1	0.689
MA0258.1	MA0258.1	0.631
MA0259.1	MA0259.1	0.335

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12593

Novel motif	Logo	P-value
1	1	0.0849
10	10	0.344
100	100	0.241
101	101	0.753
102	102	0.835
103	103	0.319
104	104	0.923
105	105	0.618
106	106	0.797
107	107	0.0173
108	108	0.108
109	109	0.855
11	11	0.299
110	110	0.146
111	111	0.144
112	112	0.92
113	113	0.65
114	114	0.0869
115	115	0.811
116	116	0.17
117	117	0.0829
118	118	0.3
119	119	0.0981
12	12	0.602
120	120	0.254
121	121	0.284
122	122	0.506
123	123	0.514
124	124	0.0565
125	125	0.273
126	126	0.637
127	127	0.601
128	128	0.749
129	129	0.0022
13	13	0.739
130	130	0.447
131	131	0.696
132	132	0.151
133	133	0.0599
134	134	0.426
135	135	0.683
136	136	0.0422
137	137	0.0396
138	138	0.287
139	139	0.67
14	14	0.805
140	140	0.182
141	141	0.175
142	142	0.0351
143	143	0.729
144	144	0.874
145	145	0.593
146	146	0.325
147	147	0.137
148	148	0.695
149	149	0.0896
15	15	0.474
150	150	0.939
151	151	0.393
152	152	0.101
153	153	0.665
154	154	0.709
155	155	0.204
156	156	0.705
157	157	0.512
158	158	0.507
159	159	0.289
16	16	0.199
160	160	0.0508
161	161	0.349
162	162	0.147
163	163	0.358
164	164	0.412
165	165	0.918
166	166	0.0362
167	167	0.328
168	168	0.179
169	169	0.352
17	17	0.411
18	18	0.144
19	19	0.306
2	2	0.106
20	20	0.43
21	21	0.559
22	22	0.931
23	23	0.842
24	24	0.647
25	25	0.855
26	26	0.303
27	27	0.248
28	28	0.626
29	29	0.427
3	3	0.317
30	30	0.477
31	31	0.34
32	32	0.00338
33	33	0.801
34	34	0.646
35	35	0.144
36	36	0.705
37	37	0.804
38	38	0.638
39	39	0.574
4	4	0.412
40	40	0.41
41	41	0.985
42	42	0.294
43	43	0.454
44	44	0.046
45	45	0.579
46	46	0.249
47	47	0.209
48	48	0.164
49	49	0.422
5	5	0.728
50	50	0.926
51	51	0.859
52	52	0.883
53	53	0.953
54	54	0.809
55	55	0.584
56	56	0.483
57	57	0.0871
58	58	0.79
59	59	0.666
6	6	0.78
60	60	0.818
61	61	0.56
62	62	0.749
63	63	0.246
64	64	0.356
65	65	0.339
66	66	0.766
67	67	0.229
68	68	0.521
69	69	0.164
7	7	0.769
70	70	0.383
71	71	0.389
72	72	0.416
73	73	0.402
74	74	0.00818
75	75	0.98
76	76	0.758
77	77	0.0512
78	78	0.449
79	79	0.294
8	8	0.0701
80	80	0.45
81	81	0.308
82	82	0.924
83	83	0.773
84	84	0.342
85	85	0.632
86	86	0.0642
87	87	0.332
88	88	0.446
89	89	0.0109
9	9	0.728
90	90	0.614
91	91	0.878
92	92	0.346
93	93	0.252
94	94	0.695
95	95	0.0629
96	96	0.301
97	97	0.717
98	98	0.414
99	99	1.14993e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12593

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005069
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000004,CL:0000134,CL:0000457,CL:0000738,CL:0000255,CL:0002191,CL:0002031,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000097,CL:0000837,CL:0000831,CL:0002028
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005069
+|accession_numbers=CAGE;DRX008333;DRR009205;DRZ000630;DRZ002015;DRZ011980;DRZ013365
+|accession_numbers_RNASeq=sRNA-Seq;DRX037237;DRR041603;DRZ007245
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.42!2645.90!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.59!6739.19!FOSB;;chr14:75988831..75988847,+!p2@BATF!2.51!322.54!BATF;;chrX:106960285..106960299,-!p1@TSC22D3!2.20!3926.26!TSC22D3;;chr21:39870339..39870443,-!p1@ERG!2.11!128.70!ERG;;chr14:75988771..75988826,+!p1@BATF!2.10!163.86!BATF;;chr7:50344289..50344323,+!p1@IKZF1!2.04!108.95!IKZF1;;chr14:75988851..75988862,+!p3@BATF!2.00!99.30!BATF;;chr7:50344251..50344288,+!p3@IKZF1!1.98!95.26!IKZF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.97!219.64!NFKBIA;;chr6:135502501..135502546,+!p1@MYB!1.90!92.53!MYB;;chr12:52445218..52445237,+!p1@NR4A1!1.87!866.31!NR4A1;;chr14:75745523..75745537,+!p1@FOS!1.86!8044.34!FOS;;chrX:48644984..48645005,+!p1@GATA1!1.85!70.47!GATA1;;chr7:28725740..28725778,+!p1@CREB5!1.82!547.37!CREB5;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.40!ATXN7;;chr20:50159198..50159299,-!p1@NFATC2!1.79!86.33!NFATC2;;chr19:18391615..18391637,-!p5@JUND!1.78!76.67!JUND;;chr9:3525727..3525828,-!p2@RFX3!1.76!140.52!RFX3;;chr14:74256787..74256858,-!p6@C14orf43!1.75!55.05!C14orf43;;chr2:157189180..157189290,-!p1@NR4A2!1.73!263.31!NR4A2;;chr7:50343634..50343717,+!p2@IKZF1!1.73!53.18!IKZF1;;chr2:145277640..145277771,-!p1@ZEB2!1.70!616.98!ZEB2;;chr14:75746340..75746368,+!p3@FOS!1.69!47.56!FOS;;chr18:77155922..77155939,+!p1@NFATC1!1.68!123.22!NFATC1;;chr19:54041669..54041697,+!p2@ZNF331!1.68!46.69!ZNF331;;chr7:28725715..28725727,+!p3@CREB5!1.67!53.47!CREB5;;chr3:128205876..128205904,-!p4@GATA2!1.65!44.10!GATA2;;chr1:59249688..59249703,-!p3@JUN!1.64!243.27!JUN;;chr7:138666053..138666146,-!p1@KIAA1549!1.63!165.74!KIAA1549;;chr17:38497662..38497713,+!p4@RARA!1.63!48.42!RARA;;chr14:35873947..35873965,-!p1@NFKBIA!1.62!2425.68!NFKBIA;;chr14:75746722..75746777,+!p2@FOS!1.62!52.03!FOS;;chr1:92951607..92951661,-!p1@GFI1!1.62!40.64!GFI1;;chr2:61108695..61108753,+!p1@REL!1.60!254.80!REL;;chr3:69788576..69788648,+!p1@MITF!1.60!199.03!MITF;;chr11:47400078..47400106,-!p1@SPI1!1.59!38.19!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!1.57!88.20!NFKBIA;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.44!TAL1;;chr19:13213511..13213545,-!p2@LYL1!1.54!36.61!LYL1;;chr1:47695003..47695042,-!p2@TAL1!1.53!33.00!TAL1;;chr12:124968706..124968748,-!p18@NCOR2!1.52!32.43!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!1.51!187.50!GATA2;;chr19:54058073..54058088,+!p1@ZNF331!1.51!31.71!ZNF331;;chr3:128205779..128205797,-!p5@GATA2!1.51!31.27!GATA2;;chr9:73028814..73028895,-!p1@KLF9!1.50!287.09!KLF9;;chr3:39195075..39195088,-!p1@CSRNP1!1.50!182.60!CSRNP1;;chr3:128205801..128205819,-!p6@GATA2!1.50!30.55!GATA2;;chr6:15401104..15401166,+!p5@JARID2!1.50!30.55!JARID2;;chr1:158985493..158985535,+!p4@IFI16!1.48!44.10!IFI16;;chr2:145271342..145271377,-!p5@ZEB2!1.48!28.97!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.47!92.38!BCL3;;chr3:39195037..39195069,-!p2@CSRNP1!1.46!167.04!CSRNP1;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.24!ZBTB38;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.37!ZBED1;;chr7:17338324..17338341,+!p3@AHR!1.43!84.89!AHR;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.98!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.41!151.76!ELF1;;chr19:45972701..45972774,+!p2@FOSB!1.41!33.72!FOSB;;chr12:52448420..52448460,+!p5@NR4A1!1.40!24.36!NR4A1;;chr14:35874077..35874091,-!p8@NFKBIA!1.40!23.92!NFKBIA;;chr7:17338266..17338282,+!p1@AHR!1.38!236.93!AHR;;chr22:38597987..38598021,+!p2@MAFF!1.38!136.77!MAFF;;chr1:204042233..204042249,+!p1@SOX13!1.37!137.92!SOX13;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.49!ZNF521;;chr8:22550982..22550999,-!p1@EGR3!1.35!59.52!EGR3;;chr19:18392422..18392440,-!p1@JUND!1.34!2750.24!JUND;;chr2:208031542..208031595,-!p2@KLF7!1.34!143.83!KLF7;;chr8:81397820..81397836,+!p2@ZBTB10!1.34!25.94!ZBTB10;;chr9:135854091..135854159,+!p1@GFI1B!1.34!21.04!GFI1B;;chr1:59249707..59249727,-!p1@JUN!1.33!817.88!JUN;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.20!NFKB2;;chr6:135502408..135502459,+!p2@MYB!1.33!23.35!MYB;;chr3:101568349..101568365,+!p1@NFKBIZ!1.31!984.63!NFKBIZ;;chr6:45390343..45390388,+!p10@RUNX2!1.30!25.37!RUNX2;;chr1:158985469..158985489,+!p7@IFI16!1.30!22.19!IFI16;;chr7:138665870..138665905,-!p4@KIAA1549!1.30!18.74!KIAA1549;;chr14:35873101..35873119,-!p6@NFKBIA!1.29!24.64!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.28!24.36!THAP2;;chr12:52448151..52448200,+!p8@NR4A1!1.28!18.16!NR4A1;;chr12:52431016..52431071,+!p4@NR4A1!1.26!20.18!NR4A1;;chr19:54041645..54041661,+!p5@ZNF331!1.26!17.29!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!1.24!1213.06!KLF6;;chr19:16435625..16435682,+!p1@KLF2!1.24!509.75!KLF2;;chr4:103422499..103422632,+!p1@NFKB1!1.24!335.66!NFKB1;;chr9:73029219..73029289,-!p2@KLF9!1.24!49.29!KLF9;;chr6:108882109..108882173,+!p2@FOXO3!1.23!84.02!FOXO3;;chr2:178128250..178128293,-!p6@NFE2L2!1.23!40.21!NFE2L2;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.00!NR4A1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1605.06!ZFP36L2;;chr1:59249732..59249749,-!p2@JUN!1.22!187.21!JUN;;chr2:97202480..97202499,+!p1@ARID5A!1.22!154.78!ARID5A;;chr9:102584262..102584276,+!p1@NR4A3!1.22!34.30!NR4A3;;chr20:34359925..34359991,+!p1@PHF20!1.21!648.83!PHF20;;chr11:128563948..128564003,+!p1@FLI1!1.21!180.87!FLI1;;chr19:6110474..6110551,-!p1@RFX2!1.21!90.36!RFX2;;chr1:47697539..47697573,-!p3@TAL1!1.21!15.13!TAL1;;chr8:60031619..60031676,-!p1@TOX!1.20!31.99!TOX;;chr19:18391708..18391737,-!p7@JUND!1.20!22.63!JUND;;chr19:13213555..13213568,-!p5@LYL1!1.20!14.99!LYL1;;chr19:16435705..16435726,+!p3@KLF2!1.20!14.70!KLF2;;chr10:3824646..3824677,-!p9@KLF6!1.20!14.70!KLF6;;chr9:110252035..110252057,-!p1@KLF4!1.19!228.00!KLF4;;chr15:50647274..50647336,-!p1@GABPB1!1.19!100.16!GABPB1;;chr6:45390300..45390335,+!p4@RUNX2!1.19!22.63!RUNX2;;chr14:75746664..75746683,+!p7@FOS!1.19!14.56!FOS;;chr18:3448455..3448480,+!p5@TGIF1!1.18!25.80!TGIF1;;chr10:3827371..3827386,-!p2@KLF6!1.17!113.85!KLF6;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.45!PRDM8;;chr12:52448338..52448401,+!p7@NR4A1!1.17!13.84!NR4A1;;chr2:61108650..61108687,+!p2@REL!1.16!66.30!REL;;chr6:45389791..45389832,+!p3@RUNX2!1.16!33.87!RUNX2;;chr19:36391434..36391450,-!p1@NFKBID!1.16!26.23!NFKBID;;chr12:52430894..52430952,+!p3@NR4A1!1.16!25.80!NR4A1;;chr18:3448422..3448439,+!p11@TGIF1!1.16!19.60!TGIF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.15!28.39!ZBTB25;;chr4:87857433..87857472,+!p9@AFF1!1.15!23.35!AFF1;;chr19:45971060..45971122,+!p3@FOSB!1.15!13.26!FOSB;;chr7:138665915..138665946,-!p3@KIAA1549!1.15!13.11!KIAA1549;;chrX:101186981..101187030,-!p1@ZMAT1!1.14!41.51!ZMAT1;;chr9:73028598..73028617,-!p5@KLF9!1.14!21.76!KLF9;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.43!NFATC2;;chr10:35484053..35484076,+!p1@CREM!1.13!31.42!CREM;;chr15:37390850..37390909,-!p3@MEIS2!1.13!24.64!MEIS2;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.46!NR4A3;;chr10:3824125..3824146,-!p12@KLF6!1.13!12.39!KLF6;;chr19:12902289..12902307,+!p1@JUNB!1.12!2777.05!JUNB;;chr4:106068026..106068084,+!p1@TET2!1.12!108.67!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.12!23.49!NR4A3;;chr4:87857474..87857489,+!p7@AFF1!1.12!21.19!AFF1;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!20.18!ZBTB16;;chr6:45390269..45390298,+!p5@RUNX2!1.12!20.03!RUNX2;;chr8:81397876..81397898,+!p5@ZBTB10!1.12!14.56!ZBTB10;;chr1:8585945..8586056,-!p3@RERE!1.11!39.92!RERE;;chr8:123793988..123794016,+!p1@ZHX2!1.11!20.90!ZHX2;;chr19:6110555..6110617,-!p2@RFX2!1.10!39.78!RFX2;;chr10:3824332..3824425,-!p4@KLF6!1.10!18.74!KLF6;;chr14:35872414..35872425,-!p7@NFKBIA!1.10!13.11!NFKBIA;;chr14:35874125..35874149,-!p11@NFKBIA!1.10!11.67!NFKBIA;;chr10:129535441..129535454,+!p1@FOXI2!1.10!11.53!FOXI2;;chr10:3827417..3827428,-!p3@KLF6!1.09!97.28!KLF6;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.24!SPI1;;chr7:17338239..17338262,+!p2@AHR!1.08!83.01!AHR;;chr12:26277956..26277980,-!p1@BHLHE41!1.08!40.21!BHLHE41;;chr17:38498594..38498661,+!p2@RARA!1.08!37.33!RARA;;chr2:208394817..208394834,+!p3@CREB1!1.07!43.96!CREB1;;chr9:117150254..117150271,-!p1@AKNA!1.07!29.40!AKNA;;chr19:18391652..18391669,-!p8@JUND!1.07!14.99!JUND;;chr14:75746579..75746605,+!p9@FOS!1.07!10.66!FOS;;chr11:47399996..47400014,-!p4@SPI1!1.06!10.38!SPI1;;chr19:45504688..45504782,+!p1@RELB!1.05!62.12!RELB;;chr12:54694758..54694805,-!p1@NFE2!1.05!12.39!NFE2;;chr14:35873069..35873078,-!p13@NFKBIA!1.05!10.23!NFKBIA;;chr1:158985553..158985574,+!p14@IFI16!1.05!10.23!IFI16;;chr2:8822176..8822196,+!p1@ID2!1.04!1407.48!ID2;;chr1:212782094..212782109,+!p1@ATF3!1.04!275.12!ATF3;;chr6:157100031..157100112,+!p2@ARID1B!1.04!55.20!ARID1B;;chr13:72441315..72441454,-!p1@DACH1!1.04!20.32!DACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.30!NR4A3;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.84!LYL1;;chr8:81397846..81397860,+!p3@ZBTB10!1.04!12.68!ZBTB10;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.11!PLAGL1;;chr7:137620684..137620711,-!p4@CREB3L2!1.04!10.09!CREB3L2;;chr7:28725585..28725608,+!p11@CREB5!1.04!9.94!CREB5;;chr14:75746705..75746720,+!p8@FOS!1.04!9.94!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.03!37.47!TSC22D3;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.89!ZBTB20;;chr8:60031682..60031710,-!p2@TOX!1.03!15.85!TOX;;chrX:106960249..106960260,-!p5@TSC22D3!1.03!15.71!TSC22D3;;chr7:137620650..137620677,-!p3@CREB3L2!1.03!9.80!CREB3L2;;chr19:16435735..16435773,+!p4@KLF2!1.03!9.66!KLF2;;chr1:151030536..151030549,+!p8@MLLT11!1.03!9.66!MLLT11;;chr1:47696918..47696935,-!p6@TAL1!1.03!9.66!TAL1;;chr19:11925071..11925113,+!p1@ZNF440!1.02!68.89!ZNF440;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.44!RUNX1;;chr19:54041574..54041589,+!p6@ZNF331!1.02!9.51!ZNF331;;chr19:45972563..45972577,+!p17@FOSB!1.02!9.37!FOSB;;chr1:47691303..47691319,-!p5@TAL1!1.02!9.37!TAL1;;chr2:61108771..61108789,+!p4@REL!1.01!14.12!REL;;chr19:54041508..54041527,+!p8@ZNF331!1.01!9.22!ZNF331;;chr2:145274900..145274934,-!p4@ZEB2!1.00!55.63!ZEB2;;chr13:45011349..45011391,-!p4@TSC22D1!1.00!22.48!TSC22D1;;chr11:113930425..113930471,+!p1@ZBTB16!1.00!13.26!ZBTB16;;chr17:74137321..74137337,-!p1@FOXJ1!1.00!9.08!FOXJ1;;chr6:135502472..135502489,+!p3@MYB!1.00!8.94!MYB;;chr19:11959532..11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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11566-120D9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000261
+|is_a=EFO:0002091;;FF:0000210;;FF:0000261
+|is_obsolete=
+|library_id=CNhs12593
+|library_id_phase_based=2:CNhs12593
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11566
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.AGTTCC.11566
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11566
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.AGTTCC.11566
 |name=Mast cell, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12593,LSID912,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=120
 |rna_catalog_number=
@@ Line 56: / Line 82: @@
 |rna_tube_id=120D9
 |rna_weight_ug=7.9
+|rnaseq_library_id=SRhi10014.AGTTCC
 |sample_age=76
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=
 |sample_experimental_condition=control, untreated cells
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.01285876609181e-229!GO:0043227;membrane-bound organelle;7.2107081423846e-196!GO:0043231;intracellular membrane-bound organelle;1.55354176278952e-195!GO:0043226;organelle;2.56644415589759e-192!GO:0043229;intracellular organelle;1.06303696770873e-191!GO:0005737;cytoplasm;1.49598050135993e-134!GO:0005634;nucleus;3.30402329563501e-107!GO:0043170;macromolecule metabolic process;4.02229602511678e-103!GO:0044422;organelle part;1.48239091445614e-99!GO:0044446;intracellular organelle part;5.07093675010682e-98!GO:0044238;primary metabolic process;1.23563645130328e-96!GO:0044237;cellular metabolic process;1.56587757533624e-95!GO:0044444;cytoplasmic part;6.70163412813404e-87!GO:0043283;biopolymer metabolic process;5.85432805212379e-79!GO:0005515;protein binding;3.56746021925883e-73!GO:0010467;gene expression;2.02236401322472e-67!GO:0032991;macromolecular complex;2.40173884131387e-64!GO:0044428;nuclear part;4.59506644842038e-64!GO:0003723;RNA binding;2.65680651305278e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.75274440551634e-60!GO:0030529;ribonucleoprotein complex;1.56016614390703e-57!GO:0043233;organelle lumen;1.60123374183678e-52!GO:0031974;membrane-enclosed lumen;1.60123374183678e-52!GO:0003676;nucleic acid binding;9.51088819639356e-50!GO:0033036;macromolecule localization;8.04169021192225e-48!GO:0015031;protein transport;1.08856588152364e-46!GO:0045184;establishment of protein localization;1.32842981220089e-44!GO:0019538;protein metabolic process;2.54772342728155e-44!GO:0008104;protein localization;3.55252756122794e-44!GO:0016070;RNA metabolic process;3.90474973988132e-44!GO:0031981;nuclear lumen;1.11248976782864e-41!GO:0044267;cellular protein metabolic process;1.11248976782864e-41!GO:0044260;cellular macromolecule metabolic process;9.78496947471665e-41!GO:0006396;RNA processing;4.01830704969665e-40!GO:0016071;mRNA metabolic process;4.54419136590304e-38!GO:0016043;cellular component organization and biogenesis;6.19866861720437e-37!GO:0031090;organelle membrane;2.59124247549154e-35!GO:0008380;RNA splicing;3.15252863619937e-34!GO:0005739;mitochondrion;3.9608077557812e-34!GO:0006397;mRNA processing;4.05411404343924e-32!GO:0006412;translation;4.58955893819333e-32!GO:0046907;intracellular transport;1.17865249131246e-31!GO:0043234;protein complex;1.32274362468678e-31!GO:0005829;cytosol;7.45664553735723e-30!GO:0050794;regulation of cellular process;2.05281779507317e-29!GO:0005840;ribosome;2.10036577228729e-29!GO:0006886;intracellular protein transport;1.07957032524369e-28!GO:0005654;nucleoplasm;8.84654605616003e-28!GO:0006996;organelle organization and biogenesis;2.95337059427737e-26!GO:0031967;organelle envelope;2.80634432488446e-25!GO:0006259;DNA metabolic process;5.35514196738761e-25!GO:0003735;structural constituent of ribosome;5.53686670510055e-25!GO:0031975;envelope;5.8450353342384e-25!GO:0008134;transcription factor binding;5.86716341126295e-25!GO:0065003;macromolecular complex assembly;7.43909739895143e-25!GO:0000166;nucleotide binding;7.79326074588721e-25!GO:0009059;macromolecule biosynthetic process;3.12896057599455e-24!GO:0005681;spliceosome;4.31784906906221e-24!GO:0033279;ribosomal subunit;8.01498508358258e-24!GO:0044451;nucleoplasm part;6.76042273839437e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.45177901272812e-23!GO:0019222;regulation of metabolic process;1.18429098544242e-22!GO:0044429;mitochondrial part;1.49606138976026e-22!GO:0043412;biopolymer modification;1.82183346970939e-22!GO:0051649;establishment of cellular localization;3.06339582630505e-22!GO:0050789;regulation of biological process;3.5832332224817e-22!GO:0051641;cellular localization;9.4885575450396e-22!GO:0022607;cellular component assembly;1.75670550907977e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.30334937070771e-21!GO:0006512;ubiquitin cycle;8.78627473543202e-21!GO:0009058;biosynthetic process;1.87759802295618e-20!GO:0006464;protein modification process;1.90971630761472e-20!GO:0043687;post-translational protein modification;3.64142966128412e-20!GO:0044249;cellular biosynthetic process;6.95618406366069e-20!GO:0031323;regulation of cellular metabolic process;2.4170032314707e-19!GO:0006350;transcription;2.90847046150367e-19!GO:0044445;cytosolic part;7.75071844180564e-19!GO:0010468;regulation of gene expression;5.64119066382421e-18!GO:0032553;ribonucleotide binding;7.99380942271374e-18!GO:0032555;purine ribonucleotide binding;7.99380942271374e-18!GO:0043228;non-membrane-bound organelle;1.05742601246127e-17!GO:0043232;intracellular non-membrane-bound organelle;1.05742601246127e-17!GO:0048770;pigment granule;4.95054737026811e-17!GO:0042470;melanosome;4.95054737026811e-17!GO:0032774;RNA biosynthetic process;5.3935371440363e-17!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.05624008479019e-17!GO:0003712;transcription cofactor activity;6.47027580337387e-17!GO:0006351;transcription, DNA-dependent;6.84379976933716e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.18789537367873e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55902026926288e-16!GO:0017076;purine nucleotide binding;1.56891278725488e-16!GO:0005740;mitochondrial envelope;1.57592623383676e-16!GO:0019941;modification-dependent protein catabolic process;1.77253512113535e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.77253512113535e-16!GO:0005794;Golgi apparatus;2.37763144502083e-16!GO:0044257;cellular protein catabolic process;3.01952279381234e-16!GO:0016462;pyrophosphatase activity;4.55668965894674e-16!GO:0006366;transcription from RNA polymerase II promoter;5.00464079546844e-16!GO:0016192;vesicle-mediated transport;5.34123837012273e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.10942744979073e-16!GO:0017111;nucleoside-triphosphatase activity;6.36489351188904e-16!GO:0065007;biological regulation;6.5138572608542e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;7.02615739888102e-16!GO:0022618;protein-RNA complex assembly;1.12122741670892e-15!GO:0012505;endomembrane system;1.49217815127274e-15!GO:0016874;ligase activity;1.60470633584141e-15!GO:0048523;negative regulation of cellular process;1.84653607106463e-15!GO:0031966;mitochondrial membrane;2.17448212309496e-15!GO:0019866;organelle inner membrane;2.27256505710295e-15!GO:0016604;nuclear body;2.36718765331184e-15!GO:0045449;regulation of transcription;2.43121182656189e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;3.23156295514816e-15!GO:0012501;programmed cell death;6.4239036521453e-15!GO:0006915;apoptosis;8.68525719653954e-15!GO:0006355;regulation of transcription, DNA-dependent;1.7009385282462e-14!GO:0006119;oxidative phosphorylation;1.77376426352319e-14!GO:0044265;cellular macromolecule catabolic process;1.93449784494747e-14!GO:0006323;DNA packaging;2.15887633192275e-14!GO:0008219;cell death;2.7702857242864e-14!GO:0016265;death;2.7702857242864e-14!GO:0048519;negative regulation of biological process;4.95416215587637e-14!GO:0006793;phosphorus metabolic process;4.98572550291209e-14!GO:0006796;phosphate metabolic process;4.98572550291209e-14!GO:0008270;zinc ion binding;5.29097277612919e-14!GO:0016607;nuclear speck;7.50426214357717e-14!GO:0043285;biopolymer catabolic process;1.00539842557425e-13!GO:0006605;protein targeting;1.03665729062487e-13!GO:0005743;mitochondrial inner membrane;1.81273153855283e-13!GO:0051276;chromosome organization and biogenesis;2.22091291498934e-13!GO:0005730;nucleolus;2.45342494742124e-13!GO:0005524;ATP binding;3.11389586577183e-13!GO:0007049;cell cycle;8.9966375214484e-13!GO:0015934;large ribosomal subunit;9.11750514611606e-13!GO:0032559;adenyl ribonucleotide binding;9.37028211017102e-13!GO:0006457;protein folding;1.15386911162414e-12!GO:0008135;translation factor activity, nucleic acid binding;1.64121447126457e-12!GO:0006974;response to DNA damage stimulus;2.25084944638912e-12!GO:0016310;phosphorylation;4.38635761707303e-12!GO:0003677;DNA binding;5.35034638828806e-12!GO:0016568;chromatin modification;5.35034638828806e-12!GO:0030163;protein catabolic process;5.5508144742216e-12!GO:0015935;small ribosomal subunit;6.0451153657888e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.37702341661956e-12!GO:0044455;mitochondrial membrane part;8.38062940356334e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.05196278050527e-11!GO:0000375;RNA splicing, via transesterification reactions;1.05196278050527e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.05196278050527e-11!GO:0030554;adenyl nucleotide binding;1.75549917353039e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.94031522016179e-11!GO:0048193;Golgi vesicle transport;2.19450772105627e-11!GO:0016563;transcription activator activity;2.73667884096642e-11!GO:0005768;endosome;3.10675972993824e-11!GO:0006913;nucleocytoplasmic transport;5.41681011752371e-11!GO:0007242;intracellular signaling cascade;7.14971381716779e-11!GO:0051169;nuclear transport;8.80748444805217e-11!GO:0009057;macromolecule catabolic process;1.02272825850405e-10!GO:0007264;small GTPase mediated signal transduction;1.52228192020037e-10!GO:0003713;transcription coactivator activity;1.78537300576213e-10!GO:0007243;protein kinase cascade;1.8480568814239e-10!GO:0016564;transcription repressor activity;1.91260697050446e-10!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.39095192297474e-10!GO:0006413;translational initiation;3.85100448015939e-10!GO:0006446;regulation of translational initiation;4.85451299294135e-10!GO:0031324;negative regulation of cellular metabolic process;6.14369430477843e-10!GO:0006281;DNA repair;6.27152171106927e-10!GO:0046914;transition metal ion binding;8.1690064780528e-10!GO:0008639;small protein conjugating enzyme activity;9.03919697128427e-10!GO:0005746;mitochondrial respiratory chain;9.73458189824356e-10!GO:0005635;nuclear envelope;1.44507867636254e-09!GO:0004842;ubiquitin-protein ligase activity;1.53724776311978e-09!GO:0003743;translation initiation factor activity;1.89589580473207e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.17737190737622e-09!GO:0016481;negative regulation of transcription;3.57344683849389e-09!GO:0019787;small conjugating protein ligase activity;4.63305978652252e-09!GO:0051082;unfolded protein binding;5.10168889109659e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.61121943551899e-09!GO:0006333;chromatin assembly or disassembly;6.84074822959204e-09!GO:0009892;negative regulation of metabolic process;7.76819417324931e-09!GO:0051726;regulation of cell cycle;8.31839139323275e-09!GO:0031965;nuclear membrane;8.46870701499082e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08606487128083e-08!GO:0000074;regulation of progression through cell cycle;1.15678600304979e-08!GO:0044248;cellular catabolic process;1.40499683825603e-08!GO:0043566;structure-specific DNA binding;1.50404973093679e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.698905089774e-08!GO:0003954;NADH dehydrogenase activity;1.698905089774e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.698905089774e-08!GO:0065004;protein-DNA complex assembly;2.19797038652489e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.23493336536464e-08!GO:0022402;cell cycle process;2.45370417981138e-08!GO:0005783;endoplasmic reticulum;2.64721881110444e-08!GO:0031980;mitochondrial lumen;2.70245856784728e-08!GO:0005759;mitochondrial matrix;2.70245856784728e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.72463075446714e-08!GO:0004386;helicase activity;3.91366889515293e-08!GO:0017038;protein import;3.93323187952718e-08!GO:0016881;acid-amino acid ligase activity;4.10507124420799e-08!GO:0045786;negative regulation of progression through cell cycle;4.52145152302709e-08!GO:0009719;response to endogenous stimulus;4.66201525844823e-08!GO:0003924;GTPase activity;5.07108501458441e-08!GO:0042981;regulation of apoptosis;5.20557212631921e-08!GO:0016740;transferase activity;5.6257285164062e-08!GO:0044431;Golgi apparatus part;6.25083340958082e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.68773813668581e-08!GO:0043067;regulation of programmed cell death;7.10067399703479e-08!GO:0005525;GTP binding;7.35279573490264e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.44259621110822e-08!GO:0050657;nucleic acid transport;7.69096328275102e-08!GO:0051236;establishment of RNA localization;7.69096328275102e-08!GO:0050658;RNA transport;7.69096328275102e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.83557827881274e-08!GO:0006403;RNA localization;1.1626776220695e-07!GO:0005694;chromosome;1.24685242364045e-07!GO:0019899;enzyme binding;1.49092612710573e-07!GO:0008565;protein transporter activity;1.93682993933955e-07!GO:0044453;nuclear membrane part;2.00546795137213e-07!GO:0004674;protein serine/threonine kinase activity;2.00546795137213e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11326834872373e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.2599273764429e-07!GO:0019829;cation-transporting ATPase activity;2.27554042352977e-07!GO:0016887;ATPase activity;2.32693107614406e-07!GO:0042775;organelle ATP synthesis coupled electron transport;2.34216173890265e-07!GO:0042773;ATP synthesis coupled electron transport;2.34216173890265e-07!GO:0031982;vesicle;2.67678567022808e-07!GO:0042623;ATPase activity, coupled;2.89607543649274e-07!GO:0030964;NADH dehydrogenase complex (quinone);3.11602898934729e-07!GO:0045271;respiratory chain complex I;3.11602898934729e-07!GO:0005747;mitochondrial respiratory chain complex I;3.11602898934729e-07!GO:0030120;vesicle coat;3.43255533018676e-07!GO:0030662;coated vesicle membrane;3.43255533018676e-07!GO:0042254;ribosome biogenesis and assembly;4.04992273257861e-07!GO:0005773;vacuole;4.14837951704697e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.14837951704697e-07!GO:0031988;membrane-bound vesicle;4.23409955040323e-07!GO:0032561;guanyl ribonucleotide binding;4.38891915174512e-07!GO:0019001;guanyl nucleotide binding;4.38891915174512e-07!GO:0003697;single-stranded DNA binding;4.72331879334012e-07!GO:0008026;ATP-dependent helicase activity;5.27607542252969e-07!GO:0030695;GTPase regulator activity;5.30356357553253e-07!GO:0016197;endosome transport;5.55283429666769e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.92981130157793e-07!GO:0005793;ER-Golgi intermediate compartment;8.83531133761623e-07!GO:0045892;negative regulation of transcription, DNA-dependent;9.06077276028371e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.41273742656395e-07!GO:0015986;ATP synthesis coupled proton transport;9.88201889105266e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.88201889105266e-07!GO:0051246;regulation of protein metabolic process;1.01709054510396e-06!GO:0031410;cytoplasmic vesicle;1.19653162757847e-06!GO:0051170;nuclear import;1.27340707363899e-06!GO:0003714;transcription corepressor activity;1.27387370626317e-06!GO:0051028;mRNA transport;1.40424586834605e-06!GO:0043069;negative regulation of programmed cell death;1.50458486258409e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.57131215478639e-06!GO:0044440;endosomal part;1.60511305335991e-06!GO:0010008;endosome membrane;1.60511305335991e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.6315740784867e-06!GO:0006606;protein import into nucleus;1.64630451539664e-06!GO:0048475;coated membrane;1.78147750706467e-06!GO:0030117;membrane coat;1.78147750706467e-06!GO:0043066;negative regulation of apoptosis;2.21539649633905e-06!GO:0044432;endoplasmic reticulum part;2.36607810676694e-06!GO:0006260;DNA replication;2.4316642721051e-06!GO:0016301;kinase activity;2.77604263862608e-06!GO:0005643;nuclear pore;2.93561645228727e-06!GO:0005798;Golgi-associated vesicle;2.9983317375299e-06!GO:0044427;chromosomal part;3.65739869350718e-06!GO:0006916;anti-apoptosis;3.72073139213499e-06!GO:0005770;late endosome;4.20033288280165e-06!GO:0000785;chromatin;4.38865159686998e-06!GO:0005083;small GTPase regulator activity;6.19183970154279e-06!GO:0000323;lytic vacuole;6.35572116331629e-06!GO:0005764;lysosome;6.35572116331629e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.60846010743894e-06!GO:0009966;regulation of signal transduction;6.90201582312239e-06!GO:0051186;cofactor metabolic process;7.66388868662471e-06!GO:0006461;protein complex assembly;8.46887342403464e-06!GO:0005769;early endosome;9.52533392077832e-06!GO:0065009;regulation of a molecular function;9.55787244584199e-06!GO:0007265;Ras protein signal transduction;9.63656600206176e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.12925743129688e-05!GO:0005813;centrosome;1.16523580911147e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.33387536656269e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.33387536656269e-05!GO:0000139;Golgi membrane;1.47731730924574e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.50639143652914e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.64754675040237e-05!GO:0006754;ATP biosynthetic process;1.74008600456874e-05!GO:0006753;nucleoside phosphate metabolic process;1.74008600456874e-05!GO:0065002;intracellular protein transport across a membrane;1.82564005005108e-05!GO:0051789;response to protein stimulus;1.85728782166826e-05!GO:0006986;response to unfolded protein;1.85728782166826e-05!GO:0006364;rRNA processing;1.8834922046624e-05!GO:0016072;rRNA metabolic process;2.0961786171621e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.2804969070542e-05!GO:0048522;positive regulation of cellular process;2.31487417442099e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;2.33395773230307e-05!GO:0006164;purine nucleotide biosynthetic process;2.39430226963877e-05!GO:0015630;microtubule cytoskeleton;2.40218304711008e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.50531699370776e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.50531699370776e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.50634567956849e-05!GO:0000245;spliceosome assembly;2.63534741562792e-05!GO:0051427;hormone receptor binding;2.65572264928083e-05!GO:0005789;endoplasmic reticulum membrane;2.77276827064211e-05!GO:0003724;RNA helicase activity;2.88485424792055e-05!GO:0009260;ribonucleotide biosynthetic process;2.91865865099604e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.9363679898934e-05!GO:0016363;nuclear matrix;3.12365723787438e-05!GO:0032446;protein modification by small protein conjugation;3.1563051147015e-05!GO:0009259;ribonucleotide metabolic process;3.72723279265184e-05!GO:0006163;purine nucleotide metabolic process;4.01838625275084e-05!GO:0009150;purine ribonucleotide metabolic process;4.59951436582106e-05!GO:0000151;ubiquitin ligase complex;4.62478197877544e-05!GO:0035257;nuclear hormone receptor binding;4.71673281653165e-05!GO:0008047;enzyme activator activity;4.92496948790183e-05!GO:0006613;cotranslational protein targeting to membrane;4.99457749717639e-05!GO:0007005;mitochondrion organization and biogenesis;5.14130398911955e-05!GO:0006402;mRNA catabolic process;5.39920182667426e-05!GO:0005096;GTPase activator activity;5.48363176388216e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.6416830600194e-05!GO:0009144;purine nucleoside triphosphate metabolic process;5.6416830600194e-05!GO:0006732;coenzyme metabolic process;5.67790559698227e-05!GO:0016567;protein ubiquitination;6.1869268118109e-05!GO:0005761;mitochondrial ribosome;6.35456100847352e-05!GO:0000313;organellar ribosome;6.35456100847352e-05!GO:0033673;negative regulation of kinase activity;7.05994463950394e-05!GO:0006469;negative regulation of protein kinase activity;7.05994463950394e-05!GO:0006334;nucleosome assembly;7.17156519163936e-05!GO:0046930;pore complex;8.0790207333531e-05!GO:0031497;chromatin assembly;8.19567161946545e-05!GO:0008654;phospholipid biosynthetic process;8.38002418853326e-05!GO:0031252;leading edge;8.49333498597926e-05!GO:0005815;microtubule organizing center;8.77854963580101e-05!GO:0009199;ribonucleoside triphosphate metabolic process;9.42436566151192e-05!GO:0003702;RNA polymerase II transcription factor activity;9.77671289611119e-05!GO:0030384;phosphoinositide metabolic process;0.00010306984835598!GO:0003690;double-stranded DNA binding;0.000108741724878986!GO:0046034;ATP metabolic process;0.000110018449264625!GO:0009967;positive regulation of signal transduction;0.000123508830644458!GO:0009060;aerobic respiration;0.000145455673513063!GO:0045259;proton-transporting ATP synthase complex;0.00014591921011102!GO:0006650;glycerophospholipid metabolic process;0.000146091589155479!GO:0016787;hydrolase activity;0.000150660187370871!GO:0008234;cysteine-type peptidase activity;0.00017074120343286!GO:0009141;nucleoside triphosphate metabolic process;0.000177862425779616!GO:0003729;mRNA binding;0.000177959359634198!GO:0016779;nucleotidyltransferase activity;0.000178084904523478!GO:0048471;perinuclear region of cytoplasm;0.000195402861123872!GO:0051348;negative regulation of transferase activity;0.000210615219264136!GO:0030036;actin cytoskeleton organization and biogenesis;0.000213936941660981!GO:0006399;tRNA metabolic process;0.000218748935575502!GO:0006468;protein amino acid phosphorylation;0.000223307087367408!GO:0045333;cellular respiration;0.000236497699746996!GO:0051188;cofactor biosynthetic process;0.000242892483637961!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000276209513432615!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000324308966164472!GO:0004812;aminoacyl-tRNA ligase activity;0.000324308966164472!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000324308966164472!GO:0005839;proteasome core complex (sensu Eukaryota);0.000331794708703995!GO:0051168;nuclear export;0.000356244160586646!GO:0030518;steroid hormone receptor signaling pathway;0.000396631088352532!GO:0008186;RNA-dependent ATPase activity;0.000445785273808467!GO:0045893;positive regulation of transcription, DNA-dependent;0.000515299146567866!GO:0007050;cell cycle arrest;0.000548316223039994!GO:0050790;regulation of catalytic activity;0.000552695058044755!GO:0006612;protein targeting to membrane;0.000557942076707408!GO:0000278;mitotic cell cycle;0.000559686608517089!GO:0009056;catabolic process;0.000565597628361619!GO:0006891;intra-Golgi vesicle-mediated transport;0.000572213380732345!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000589087099310747!GO:0015631;tubulin binding;0.000589873213686864!GO:0006643;membrane lipid metabolic process;0.000591271533288416!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000620760909447324!GO:0043038;amino acid activation;0.000621035055274056!GO:0006418;tRNA aminoacylation for protein translation;0.000621035055274056!GO:0043039;tRNA aminoacylation;0.000621035055274056!GO:0016251;general RNA polymerase II transcription factor activity;0.00062211579510211!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000751016588511123!GO:0030658;transport vesicle membrane;0.000756317091645625!GO:0048518;positive regulation of biological process;0.000766132493956006!GO:0006401;RNA catabolic process;0.000772207881431264!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000774948606501421!GO:0005667;transcription factor complex;0.000802386445014458!GO:0009055;electron carrier activity;0.000810146884149269!GO:0008287;protein serine/threonine phosphatase complex;0.000915937458234!GO:0030659;cytoplasmic vesicle membrane;0.000922543267646396!GO:0012506;vesicle membrane;0.000931600988866176!GO:0045941;positive regulation of transcription;0.000942340647665376!GO:0006752;group transfer coenzyme metabolic process;0.000955330826416389!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000968985532224995!GO:0006352;transcription initiation;0.0010097630367098!GO:0004672;protein kinase activity;0.00101861192703554!GO:0005885;Arp2/3 protein complex;0.00102476753133314!GO:0001726;ruffle;0.00107896311927442!GO:0005774;vacuolar membrane;0.00115974464978611!GO:0004298;threonine endopeptidase activity;0.0011809856312373!GO:0009108;coenzyme biosynthetic process;0.00118104034562774!GO:0004004;ATP-dependent RNA helicase activity;0.00129752836875012!GO:0019783;small conjugating protein-specific protease activity;0.00130955799603005!GO:0031902;late endosome membrane;0.00135869804417168!GO:0004843;ubiquitin-specific protease activity;0.00156344282654276!GO:0006099;tricarboxylic acid cycle;0.00161981659535158!GO:0046356;acetyl-CoA catabolic process;0.00161981659535158!GO:0046467;membrane lipid biosynthetic process;0.00162483086958505!GO:0030522;intracellular receptor-mediated signaling pathway;0.00165105047478923!GO:0030521;androgen receptor signaling pathway;0.00166759334120425!GO:0060090;molecular adaptor activity;0.00170310162241384!GO:0031901;early endosome membrane;0.0017416606178776!GO:0004261;cathepsin G activity;0.00176756375851398!GO:0043021;ribonucleoprotein binding;0.00210310432426517!GO:0030660;Golgi-associated vesicle membrane;0.00222547254558763!GO:0030029;actin filament-based process;0.00225907168563661!GO:0008361;regulation of cell size;0.00235439066353579!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00247489804415609!GO:0030133;transport vesicle;0.00249815289469753!GO:0006818;hydrogen transport;0.00250190489126404!GO:0016044;membrane organization and biogenesis;0.00251038778311257!GO:0045792;negative regulation of cell size;0.00261159794694848!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00263711952760556!GO:0004221;ubiquitin thiolesterase activity;0.00263711952760556!GO:0046854;phosphoinositide phosphorylation;0.00263711952760556!GO:0046519;sphingoid metabolic process;0.00263711952760556!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00267173250044392!GO:0015992;proton transport;0.00276584390992006!GO:0044433;cytoplasmic vesicle part;0.0027832235977068!GO:0030308;negative regulation of cell growth;0.00281244570079402!GO:0006084;acetyl-CoA metabolic process;0.0028987313872164!GO:0005741;mitochondrial outer membrane;0.00300555523788562!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00318481286581843!GO:0008017;microtubule binding;0.00319104933534902!GO:0016049;cell growth;0.00324176479747078!GO:0017091;AU-rich element binding;0.00330167569986574!GO:0050779;RNA destabilization;0.00330167569986574!GO:0000289;poly(A) tail shortening;0.00330167569986574!GO:0008286;insulin receptor signaling pathway;0.00345214057131105!GO:0030134;ER to Golgi transport vesicle;0.00345235526404232!GO:0030127;COPII vesicle coat;0.00363409692889072!GO:0012507;ER to Golgi transport vesicle membrane;0.00363409692889072!GO:0001558;regulation of cell growth;0.00384149744529729!GO:0051252;regulation of RNA metabolic process;0.00384149744529729!GO:0044437;vacuolar part;0.00397330369636532!GO:0005099;Ras GTPase activator activity;0.00427436084173226!GO:0031072;heat shock protein binding;0.0043654720588061!GO:0030663;COPI coated vesicle membrane;0.00446754904538177!GO:0030126;COPI vesicle coat;0.00446754904538177!GO:0043407;negative regulation of MAP kinase activity;0.00449785718999951!GO:0006417;regulation of translation;0.00449793890466889!GO:0045926;negative regulation of growth;0.00456066996653959!GO:0006672;ceramide metabolic process;0.00462400529376201!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00463644571126216!GO:0042802;identical protein binding;0.00468338714597844!GO:0043488;regulation of mRNA stability;0.00471353844538661!GO:0043487;regulation of RNA stability;0.00471353844538661!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00475686791008189!GO:0015399;primary active transmembrane transporter activity;0.00475686791008189!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00493131263436829!GO:0043065;positive regulation of apoptosis;0.00505059880461343!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00505059880461343!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00505059880461343!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00505059880461343!GO:0019867;outer membrane;0.00505059880461343!GO:0045045;secretory pathway;0.00506443415690684!GO:0046474;glycerophospholipid biosynthetic process;0.00510736898502456!GO:0007034;vacuolar transport;0.00519712766357955!GO:0006261;DNA-dependent DNA replication;0.00520412492279578!GO:0048500;signal recognition particle;0.00548906346449607!GO:0035258;steroid hormone receptor binding;0.00559488478907736!GO:0005048;signal sequence binding;0.0056883348246329!GO:0031968;organelle outer membrane;0.00569310007853494!GO:0046834;lipid phosphorylation;0.00569310007853494!GO:0043623;cellular protein complex assembly;0.00589255713285804!GO:0022890;inorganic cation transmembrane transporter activity;0.00606674366852109!GO:0030041;actin filament polymerization;0.00611654151662081!GO:0016859;cis-trans isomerase activity;0.00611830643374244!GO:0032940;secretion by cell;0.00612725544584493!GO:0030118;clathrin coat;0.0062165465450252!GO:0043068;positive regulation of programmed cell death;0.00623624167368546!GO:0006950;response to stress;0.0062684011454898!GO:0016790;thiolester hydrolase activity;0.00631181745174746!GO:0019210;kinase inhibitor activity;0.00643444783140637!GO:0016311;dephosphorylation;0.00673717366174818!GO:0004860;protein kinase inhibitor activity;0.00690151920611194!GO:0006338;chromatin remodeling;0.00702305407684773!GO:0016584;nucleosome positioning;0.00703844900411334!GO:0009109;coenzyme catabolic process;0.00735462769147731!GO:0004722;protein serine/threonine phosphatase activity;0.00742655063537717!GO:0030137;COPI-coated vesicle;0.0074322437269234!GO:0006917;induction of apoptosis;0.0074405901138581!GO:0046489;phosphoinositide biosynthetic process;0.00801505039544401!GO:0046983;protein dimerization activity;0.00825325637510759!GO:0005765;lysosomal membrane;0.00835550417582708!GO:0018193;peptidyl-amino acid modification;0.00871244164171393!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00892372400691527!GO:0005070;SH3/SH2 adaptor activity;0.00919127855291789!GO:0003899;DNA-directed RNA polymerase activity;0.00930610788404021!GO:0006644;phospholipid metabolic process;0.00934503879462704!GO:0003682;chromatin binding;0.00942386893710375!GO:0003684;damaged DNA binding;0.0095644286905251!GO:0030867;rough endoplasmic reticulum membrane;0.00981224231325215!GO:0033116;ER-Golgi intermediate compartment membrane;0.00993110026624328!GO:0022406;membrane docking;0.00993110026624328!GO:0048278;vesicle docking;0.00993110026624328!GO:0031625;ubiquitin protein ligase binding;0.0100291621952977!GO:0006414;translational elongation;0.010036160009466!GO:0003746;translation elongation factor activity;0.0100834961309637!GO:0051338;regulation of transferase activity;0.010104658681068!GO:0019843;rRNA binding;0.0102772577507379!GO:0012502;induction of programmed cell death;0.0102903544964544!GO:0006904;vesicle docking during exocytosis;0.0106539261664549!GO:0035035;histone acetyltransferase binding;0.0108841174598833!GO:0005637;nuclear inner membrane;0.0109778125892605!GO:0043549;regulation of kinase activity;0.011032528790925!GO:0005874;microtubule;0.0110602409449227!GO:0033367;protein localization in mast cell secretory granule;0.0110602409449227!GO:0033365;protein localization in organelle;0.0110602409449227!GO:0033371;T cell secretory granule organization and biogenesis;0.0110602409449227!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0110602409449227!GO:0033375;protease localization in T cell secretory granule;0.0110602409449227!GO:0042629;mast cell granule;0.0110602409449227!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0110602409449227!GO:0033364;mast cell secretory granule organization and biogenesis;0.0110602409449227!GO:0033380;granzyme B localization in T cell secretory granule;0.0110602409449227!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0110602409449227!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0110602409449227!GO:0033368;protease localization in mast cell secretory granule;0.0110602409449227!GO:0033366;protein localization in secretory granule;0.0110602409449227!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0110602409449227!GO:0033374;protein localization in T cell secretory granule;0.0110602409449227!GO:0051187;cofactor catabolic process;0.0112463838483509!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0113176638356021!GO:0045047;protein targeting to ER;0.0113176638356021!GO:0031326;regulation of cellular biosynthetic process;0.0113534020607356!GO:0051329;interphase of mitotic cell cycle;0.011461101003573!GO:0030119;AP-type membrane coat adaptor complex;0.0115217437378319!GO:0043087;regulation of GTPase activity;0.0115992951348699!GO:0000118;histone deacetylase complex;0.0118134983093094!GO:0048468;cell development;0.0120327488436537!GO:0009889;regulation of biosynthetic process;0.0120929539910485!GO:0051056;regulation of small GTPase mediated signal transduction;0.012210330315143!GO:0008333;endosome to lysosome transport;0.0127971795777894!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0128031898909736!GO:0045859;regulation of protein kinase activity;0.0128825335718989!GO:0007004;telomere maintenance via telomerase;0.0132117822927453!GO:0051098;regulation of binding;0.0133841516784725!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0136075760205752!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0136556204512338!GO:0043086;negative regulation of catalytic activity;0.0139001770061791!GO:0006509;membrane protein ectodomain proteolysis;0.0143665534125944!GO:0033619;membrane protein proteolysis;0.0143665534125944!GO:0051325;interphase;0.0143665534125944!GO:0006376;mRNA splice site selection;0.0144675718366812!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0144675718366812!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0150170248639335!GO:0003711;transcription elongation regulator activity;0.0151609901561154!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0152483350244055!GO:0048487;beta-tubulin binding;0.0152833083132922!GO:0051301;cell division;0.015541455829044!GO:0001516;prostaglandin biosynthetic process;0.0155915515087945!GO:0046457;prostanoid biosynthetic process;0.0155915515087945!GO:0046966;thyroid hormone receptor binding;0.01560580340236!GO:0007040;lysosome organization and biogenesis;0.0159473781356755!GO:0005669;transcription factor TFIID complex;0.0160171974105437!GO:0040029;regulation of gene expression, epigenetic;0.0169462448038111!GO:0007266;Rho protein signal transduction;0.017044955715165!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0170493860127741!GO:0006839;mitochondrial transport;0.0171793023161389!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0176421386089949!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0176816507534236!GO:0022415;viral reproductive process;0.0177452758412463!GO:0006470;protein amino acid dephosphorylation;0.0179795105035472!GO:0009893;positive regulation of metabolic process;0.0180829257350832!GO:0006897;endocytosis;0.0182166747702375!GO:0010324;membrane invagination;0.0182166747702375!GO:0005057;receptor signaling protein activity;0.0182166747702375!GO:0022403;cell cycle phase;0.018459170839941!GO:0030258;lipid modification;0.018673796093148!GO:0005020;stem cell factor receptor activity;0.018981224452224!GO:0008250;oligosaccharyl transferase complex;0.0191446542990898!GO:0051059;NF-kappaB binding;0.0192177367617114!GO:0050811;GABA receptor binding;0.0192218031941892!GO:0040008;regulation of growth;0.0195794291580352!GO:0008092;cytoskeletal protein binding;0.0196643574632862!GO:0008312;7S RNA binding;0.0199007661783611!GO:0004576;oligosaccharyl transferase activity;0.0201694892605623!GO:0030131;clathrin adaptor complex;0.0204837217171379!GO:0009266;response to temperature stimulus;0.020802492703306!GO:0043492;ATPase activity, coupled to movement of substances;0.0208381291650383!GO:0045746;negative regulation of Notch signaling pathway;0.0210765876913495!GO:0006611;protein export from nucleus;0.0211786546038806!GO:0032200;telomere organization and biogenesis;0.0212618843648181!GO:0000723;telomere maintenance;0.0212618843648181!GO:0005942;phosphoinositide 3-kinase complex;0.0214195679384996!GO:0005095;GTPase inhibitor activity;0.0214419182192368!GO:0007041;lysosomal transport;0.0215186451796579!GO:0008632;apoptotic program;0.0219238431296312!GO:0051336;regulation of hydrolase activity;0.022219760589745!GO:0006383;transcription from RNA polymerase III promoter;0.0224166225356177!GO:0008637;apoptotic mitochondrial changes;0.0225784924769977!GO:0035004;phosphoinositide 3-kinase activity;0.0226097971258016!GO:0016303;1-phosphatidylinositol-3-kinase activity;0.0226097971258016!GO:0001727;lipid kinase activity;0.0228647462194427!GO:0006354;RNA elongation;0.0232073131849948!GO:0006405;RNA export from nucleus;0.0238330535421683!GO:0050681;androgen receptor binding;0.0239477780160009!GO:0030880;RNA polymerase complex;0.0240698199702899!GO:0030125;clathrin vesicle coat;0.0244275748870413!GO:0030665;clathrin coated vesicle membrane;0.0244275748870413!GO:0005657;replication fork;0.0244275748870413!GO:0046578;regulation of Ras protein signal transduction;0.0248527084866549!GO:0000209;protein polyubiquitination;0.0248625276397956!GO:0046822;regulation of nucleocytoplasmic transport;0.0253388504795895!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0255059935436328!GO:0005762;mitochondrial large ribosomal subunit;0.0275867461846948!GO:0000315;organellar large ribosomal subunit;0.0275867461846948!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0279669116875031!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0279669116875031!GO:0006661;phosphatidylinositol biosynthetic process;0.0283136868090309!GO:0046456;icosanoid biosynthetic process;0.0286266624599628!GO:0005791;rough endoplasmic reticulum;0.0288472697332845!GO:0005684;U2-dependent spliceosome;0.0291612521581841!GO:0008154;actin polymerization and/or depolymerization;0.0292400824612811!GO:0046488;phosphatidylinositol metabolic process;0.0297610946038883!GO:0006310;DNA recombination;0.0298929119789965!GO:0007030;Golgi organization and biogenesis;0.0299780019221183!GO:0018196;peptidyl-asparagine modification;0.0315360633677324!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0315360633677324!GO:0000188;inactivation of MAPK activity;0.0316005859649555!GO:0051087;chaperone binding;0.0316005859649555!GO:0005869;dynactin complex;0.0316176739475319!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0319881105752571!GO:0006302;double-strand break repair;0.0328605982160164!GO:0004527;exonuclease activity;0.0331286007877909!GO:0045576;mast cell activation;0.0332339938226559!GO:0006289;nucleotide-excision repair;0.0333351642489919!GO:0043414;biopolymer methylation;0.0333473633800023!GO:0008276;protein methyltransferase activity;0.0336533902240208!GO:0015980;energy derivation by oxidation of organic compounds;0.0338928208747051!GO:0046426;negative regulation of JAK-STAT cascade;0.0344823144752431!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0347957467637847!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0349964093314078!GO:0000428;DNA-directed RNA polymerase complex;0.0349964093314078!GO:0030176;integral to endoplasmic reticulum membrane;0.0352304433746984!GO:0045603;positive regulation of endothelial cell differentiation;0.035440772069445!GO:0008139;nuclear localization sequence binding;0.0361098589714096!GO:0006665;sphingolipid metabolic process;0.0365363840116469!GO:0032984;macromolecular complex disassembly;0.0370203181504358!GO:0015266;protein channel activity;0.0374526414371461!GO:0045454;cell redox homeostasis;0.0376834706250075!GO:0043022;ribosome binding;0.0379570963418219!GO:0051920;peroxiredoxin activity;0.0384652761968612!GO:0047485;protein N-terminus binding;0.0390655934316239!GO:0000059;protein import into nucleus, docking;0.0391747396657497!GO:0030149;sphingolipid catabolic process;0.0392604529787757!GO:0004721;phosphoprotein phosphatase activity;0.0393757264286347!GO:0030027;lamellipodium;0.0395779295564897!GO:0016601;Rac protein signal transduction;0.039917459216801!GO:0006013;mannose metabolic process;0.0404139267157269!GO:0007033;vacuole organization and biogenesis;0.0407717782140725!GO:0031647;regulation of protein stability;0.0409775604086382!GO:0015923;mannosidase activity;0.0415436694782161!GO:0030271;chymase activity;0.0417952280851771!GO:0016791;phosphoric monoester hydrolase activity;0.0421634690827078!GO:0045947;negative regulation of translational initiation;0.0421634690827078!GO:0000082;G1/S transition of mitotic cell cycle;0.0423152908258526!GO:0030503;regulation of cell redox homeostasis;0.0423644812003723!GO:0006892;post-Golgi vesicle-mediated transport;0.0423688889504341!GO:0009117;nucleotide metabolic process;0.0425940300630749!GO:0032507;maintenance of cellular protein localization;0.0432020614861922!GO:0019377;glycolipid catabolic process;0.0434257356318266!GO:0016279;protein-lysine N-methyltransferase activity;0.0435964420330192!GO:0018024;histone-lysine N-methyltransferase activity;0.0435964420330192!GO:0016278;lysine N-methyltransferase activity;0.0435964420330192!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0435964420330192!GO:0005484;SNAP receptor activity;0.0437054341571094!GO:0030218;erythrocyte differentiation;0.0448134210445597!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0454767555945683!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0454767555945683!GO:0042147;retrograde transport, endosome to Golgi;0.045625977396991!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.04569530413448!GO:0043681;protein import into mitochondrion;0.0457674674994933!GO:0008629;induction of apoptosis by intracellular signals;0.0459395188211966!GO:0051219;phosphoprotein binding;0.0460644412378989!GO:0005801;cis-Golgi network;0.0463822855004891!GO:0006984;ER-nuclear signaling pathway;0.046397599979387!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0463995674460026!GO:0008601;protein phosphatase type 2A regulator activity;0.0464174335563316!GO:0051235;maintenance of localization;0.0465615121393538!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0466524322796223!GO:0045637;regulation of myeloid cell differentiation;0.0470053744385367!GO:0000119;mediator complex;0.0472732548545932!GO:0005085;guanyl-nucleotide exchange factor activity;0.0475764594371445!GO:0000781;chromosome, telomeric region;0.0475973670458875!GO:0030140;trans-Golgi network transport vesicle;0.047756867595426!GO:0006626;protein targeting to mitochondrion;0.0482626050948832!GO:0005955;calcineurin complex;0.0482626050948832!GO:0048146;positive regulation of fibroblast proliferation;0.048415622094777!GO:0016585;chromatin remodeling complex;0.0496234121075887
 |sample_id=11566
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=skin
 |top_motifs=ATF4:3.10607667868;CREB1:2.67714808131;GATA6:2.49634917986;AR:2.15266924992;ATF5_CREB3:2.12133485218;FOX{I1,J2}:2.08435497079;NFKB1_REL_RELA:2.08170994721;RFX1:2.08140036543;PAX2:2.01025250652;FOX{D1,D2}:1.95777212704;STAT1,3:1.95008124302;FOXN1:1.79799622167;PPARG:1.7666408519;RFX2..5_RFXANK_RFXAP:1.722379697;EP300:1.69285299017;EGR1..3:1.60442418716;HIF1A:1.58114351031;DMAP1_NCOR{1,2}_SMARC:1.49178341069;HSF1,2:1.48291260797;TFAP2{A,C}:1.4795961718;SREBF1,2:1.47463231262;PATZ1:1.4032714707;ATF2:1.35988674305;JUN:1.33653201393;RUNX1..3:1.3240648485;CDX1,2,4:1.31353880274;SPIB:1.29397164893;MAFB:1.28082204488;ELF1,2,4:1.23174443196;BPTF:1.22615395311;SPI1:1.12799579306;SP1:1.11259024971;HBP1_HMGB_SSRP1_UBTF:1.10092692369;TGIF1:1.07962683043;TLX2:1.03375651575;FOX{F1,F2,J1}:1.02694063461;NHLH1,2:0.921826205603;RXRA_VDR{dimer}:0.920809801267;CRX:0.908411004423;ESR1:0.867607737211;IKZF2:0.851454952148;ETS1,2:0.851433693211;DBP:0.831365708982;XBP1:0.77392399701;FOS_FOS{B,L1}_JUN{B,D}:0.747670987994;MYB:0.733240068607;MAZ:0.702873255289;ZFP161:0.694096836413;NFIL3:0.69040146451;HOXA9_MEIS1:0.687744443322;FOSL2:0.680645744957;ESRRA:0.637408797779;ATF6:0.633597391035;NANOG{mouse}:0.623098891784;TFAP4:0.622687444335;MEF2{A,B,C,D}:0.61063713944;BREu{core}:0.554034233627;ZNF238:0.552019189751;BACH2:0.530268315001;EBF1:0.485820087485;NFE2:0.481609393031;ALX1:0.400217230747;NFE2L1:0.398850597344;NFATC1..3:0.369315479924;MYFfamily:0.350605794021;RXR{A,B,G}:0.323089609324;SMAD1..7,9:0.319167097469;SOX2:0.286050529673;TFCP2:0.28070707828;FOXP1:0.262806457186;NR6A1:0.242718401842;HOX{A6,A7,B6,B7}:0.24086644074;PAX6:0.236803842287;SPZ1:0.228773779817;POU2F1..3:0.216124098532;PBX1:0.215837484344;ZNF148:0.159840496583;STAT2,4,6:0.153822594953;TFAP2B:0.11605781876;SOX5:0.094472869924;PAX1,9:0.06013378576;SRF:0.0195992406439;NKX6-1,2:0.00548310600246;HIC1:-0.0171695645982;bHLH_family:-0.0204888299082;HMX1:-0.0238149300702;MTF1:-0.0269939284203;FOXO1,3,4:-0.0303633724296;TBP:-0.0358521327643;HES1:-0.0404598852882;NKX3-2:-0.0686550019054;VSX1,2:-0.0720533419964;MED-1{core}:-0.0762653124429;MTE{core}:-0.0813443046456;ZIC1..3:-0.0918527975181;MZF1:-0.100464992132;TBX4,5:-0.124677062386;GLI1..3:-0.137674819994;CUX2:-0.137969533603;ELK1,4_GABP{A,B1}:-0.1527984713;NFY{A,B,C}:-0.154998844271;NFE2L2:-0.18387471407;TOPORS:-0.190756193064;T:-0.205167811698;PAX5:-0.211921551228;TAL1_TCF{3,4,12}:-0.220406724418;REST:-0.220610122714;GTF2I:-0.263525228106;NRF1:-0.273049394081;IRF1,2:-0.27394618235;ZBTB6:-0.280949839526;FOXL1:-0.28919931951;XCPE1{core}:-0.298717798321;PITX1..3:-0.342650204579;PAX3,7:-0.34291846988;RORA:-0.349669351597;GZF1:-0.352063680863;HNF4A_NR2F1,2:-0.362780355752;STAT5{A,B}:-0.371767521124;EVI1:-0.37592388161;HLF:-0.376145559177;EN1,2:-0.389033650942;ZNF423:-0.391933955849;RREB1:-0.403975934078;FOXM1:-0.422965334099;ZNF143:-0.437259107581;POU6F1:-0.450502964594;AHR_ARNT_ARNT2:-0.451974451367;PAX4:-0.45217353312;TLX1..3_NFIC{dimer}:-0.471559517966;E2F1..5:-0.501051239087;SOX{8,9,10}:-0.513766075677;ARID5B:-0.544250709502;HOX{A5,B5}:-0.555363941153;PRRX1,2:-0.560471993246;CEBPA,B_DDIT3:-0.584565105536;HNF1A:-0.600131394549;TFDP1:-0.603825881433;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.608035316757;ZNF384:-0.610238847521;ZBTB16:-0.619849902316;IKZF1:-0.643037108349;NKX2-1,4:-0.671360320548;LHX3,4:-0.680503483351;FOXP3:-0.68753591185;TEAD1:-0.728389133204;YY1:-0.735296186729;HAND1,2:-0.740946840141;POU1F1:-0.757157495953;FOXQ1:-0.763826789204;ZEB1:-0.775066191531;NKX2-3_NKX2-5:-0.826626596601;NKX3-1:-0.839875346825;LEF1_TCF7_TCF7L1,2:-0.85891424372;GATA4:-0.866857678229;AIRE:-0.870439695551;TP53:-0.882708892451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.890182584423;SNAI1..3:-0.928500159424;FOXD3:-0.932857806919;NR3C1:-0.938061610148;GTF2A1,2:-0.958178655054;PRDM1:-0.968989674501;SOX17:-0.973569899879;PAX8:-1.03564109098;NFIX:-1.04874980798;RBPJ:-1.05054057496;NANOG:-1.07459656017;NKX2-2,8:-1.12827146451;NR5A1,2:-1.14830243033;IRF7:-1.22753522628;ONECUT1,2:-1.2295729705;OCT4_SOX2{dimer}:-1.24102896954;UFEwm:-1.30191167038;POU5F1:-1.36091088293;MYOD1:-1.36240045845;GFI1:-1.40542352586;HOX{A4,D4}:-1.40979240335;HMGA1,2:-1.45937142733;MYBL2:-1.53164808574;FOXA2:-1.57135044217;NR1H4:-1.73071079654;GFI1B:-1.874153023;ALX4:-2.1031140199;TEF:-2.10506517716;ADNP_IRX_SIX_ZHX:-2.12241040844;KLF4:-2.1900278024;CDC5L:-2.23136010439;LMO2:-2.26167030539;GCM1,2:-2.33037416272;POU3F1..4:-2.59679556694;PDX1:-2.65255606628
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11566-120D9;search_select_hide=table117:FF:11566-120D9
 }}

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FF:11566-120D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0