FF:12236-129G4: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	amniotic membrane cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12503
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Hiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005529

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12503		CAGE		DRX008538		DRR009410

Accession ID Hg19

Library id		BAM		CTSS
CNhs12503		DRZ000835		DRZ002220

Accession ID Hg38

Library id		BAM		CTSS
CNhs12503		DRZ012185		DRZ013570

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.278
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.297
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.1
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0446
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.269
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0516
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.659
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0992
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.277
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.34
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.2
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.113
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.565
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.202
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.202
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.421
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0836
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.301
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.63
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.113
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.34
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.312
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12503

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0562
MA0003.1	MA0003.1	0.987
MA0004.1	MA0004.1	0.965
MA0006.1	MA0006.1	0.0681
MA0007.1	MA0007.1	0.591
MA0009.1	MA0009.1	0.371
MA0014.1	MA0014.1	0.0419
MA0017.1	MA0017.1	0.0996
MA0018.2	MA0018.2	0.415
MA0019.1	MA0019.1	0.0518
MA0024.1	MA0024.1	9.70052e-7
MA0025.1	MA0025.1	0.975
MA0027.1	MA0027.1	0.863
MA0028.1	MA0028.1	0.307
MA0029.1	MA0029.1	0.671
MA0030.1	MA0030.1	0.756
MA0031.1	MA0031.1	0.839
MA0035.2	MA0035.2	0.468
MA0038.1	MA0038.1	0.0267
MA0039.2	MA0039.2	0.00376
MA0040.1	MA0040.1	0.833
MA0041.1	MA0041.1	0.408
MA0042.1	MA0042.1	0.829
MA0043.1	MA0043.1	0.353
MA0046.1	MA0046.1	0.561
MA0047.2	MA0047.2	0.538
MA0048.1	MA0048.1	0.177
MA0050.1	MA0050.1	8.13848e-4
MA0051.1	MA0051.1	0.0192
MA0052.1	MA0052.1	0.41
MA0055.1	MA0055.1	0.161
MA0057.1	MA0057.1	0.532
MA0058.1	MA0058.1	0.999
MA0059.1	MA0059.1	0.0726
MA0060.1	MA0060.1	3.42858e-5
MA0061.1	MA0061.1	0.015
MA0062.2	MA0062.2	0.764
MA0065.2	MA0065.2	0.195
MA0066.1	MA0066.1	0.684
MA0067.1	MA0067.1	0.09
MA0068.1	MA0068.1	0.0267
MA0069.1	MA0069.1	0.867
MA0070.1	MA0070.1	0.694
MA0071.1	MA0071.1	0.258
MA0072.1	MA0072.1	0.754
MA0073.1	MA0073.1	0.527
MA0074.1	MA0074.1	0.533
MA0076.1	MA0076.1	0.636
MA0077.1	MA0077.1	0.41
MA0078.1	MA0078.1	0.233
MA0079.2	MA0079.2	0.0803
MA0080.2	MA0080.2	1.99845e-4
MA0081.1	MA0081.1	0.095
MA0083.1	MA0083.1	0.0352
MA0084.1	MA0084.1	0.18
MA0087.1	MA0087.1	0.451
MA0088.1	MA0088.1	0.431
MA0090.1	MA0090.1	2.99206e-6
MA0091.1	MA0091.1	0.351
MA0092.1	MA0092.1	0.226
MA0093.1	MA0093.1	0.902
MA0099.2	MA0099.2	0.0686
MA0100.1	MA0100.1	0.643
MA0101.1	MA0101.1	0.149
MA0102.2	MA0102.2	0.668
MA0103.1	MA0103.1	0.00568
MA0104.2	MA0104.2	0.00323
MA0105.1	MA0105.1	0.00304
MA0106.1	MA0106.1	0.23
MA0107.1	MA0107.1	0.0753
MA0108.2	MA0108.2	0.00181
MA0111.1	MA0111.1	0.903
MA0112.2	MA0112.2	0.454
MA0113.1	MA0113.1	0.778
MA0114.1	MA0114.1	0.262
MA0115.1	MA0115.1	0.112
MA0116.1	MA0116.1	0.0182
MA0117.1	MA0117.1	0.298
MA0119.1	MA0119.1	0.0751
MA0122.1	MA0122.1	0.546
MA0124.1	MA0124.1	0.364
MA0125.1	MA0125.1	0.0901
MA0131.1	MA0131.1	0.694
MA0135.1	MA0135.1	0.707
MA0136.1	MA0136.1	0.0219
MA0137.2	MA0137.2	0.0921
MA0138.2	MA0138.2	0.513
MA0139.1	MA0139.1	0.0856
MA0140.1	MA0140.1	0.659
MA0141.1	MA0141.1	0.00447
MA0142.1	MA0142.1	0.492
MA0143.1	MA0143.1	0.457
MA0144.1	MA0144.1	0.665
MA0145.1	MA0145.1	0.913
MA0146.1	MA0146.1	0.0846
MA0147.1	MA0147.1	0.00446
MA0148.1	MA0148.1	0.497
MA0149.1	MA0149.1	0.276
MA0150.1	MA0150.1	0.114
MA0152.1	MA0152.1	0.301
MA0153.1	MA0153.1	0.705
MA0154.1	MA0154.1	0.168
MA0155.1	MA0155.1	0.632
MA0156.1	MA0156.1	0.0808
MA0157.1	MA0157.1	0.904
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.336
MA0162.1	MA0162.1	0.473
MA0163.1	MA0163.1	0.0338
MA0164.1	MA0164.1	0.593
MA0258.1	MA0258.1	0.0173
MA0259.1	MA0259.1	0.356

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12503

Novel motif	Logo	P-value
1	1	0.0729
10	10	0.51
100	100	0.678
101	101	0.593
102	102	0.978
103	103	0.666
104	104	0.588
105	105	0.282
106	106	0.049
107	107	0.339
108	108	0.379
109	109	0.326
11	11	0.26
110	110	0.505
111	111	0.236
112	112	0.423
113	113	0.00476
114	114	0.0618
115	115	0.752
116	116	0.122
117	117	0.521
118	118	0.317
119	119	0.284
12	12	0.729
120	120	0.345
121	121	0.365
122	122	0.493
123	123	7.62243e-4
124	124	0.0167
125	125	0.793
126	126	0.883
127	127	0.887
128	128	0.0345
129	129	0.625
13	13	0.789
130	130	0.949
131	131	0.00781
132	132	0.906
133	133	0.977
134	134	0.0274
135	135	0.908
136	136	0.00903
137	137	0.291
138	138	0.132
139	139	0.00545
14	14	0.81
140	140	0.903
141	141	0.433
142	142	0.103
143	143	0.303
144	144	0.864
145	145	0.735
146	146	0.0175
147	147	0.157
148	148	0.305
149	149	0.98
15	15	0.802
150	150	0.789
151	151	0.968
152	152	0.0649
153	153	0.224
154	154	0.223
155	155	0.213
156	156	0.429
157	157	0.249
158	158	0.509
159	159	0.92
16	16	0.382
160	160	0.945
161	161	0.675
162	162	0.453
163	163	0.365
164	164	0.943
165	165	0.569
166	166	0.827
167	167	0.547
168	168	0.43
169	169	0.331
17	17	0.858
18	18	0.188
19	19	0.278
2	2	0.691
20	20	0.236
21	21	0.105
22	22	0.323
23	23	0.32
24	24	0.523
25	25	0.815
26	26	0.241
27	27	0.29
28	28	0.833
29	29	0.117
3	3	0.94
30	30	0.177
31	31	0.837
32	32	0.648
33	33	0.782
34	34	0.611
35	35	0.0126
36	36	0.0359
37	37	0.0384
38	38	0.424
39	39	0.372
4	4	0.852
40	40	0.974
41	41	0.292
42	42	0.789
43	43	0.234
44	44	0.529
45	45	0.176
46	46	0.0584
47	47	0.115
48	48	0.718
49	49	0.0623
5	5	0.89
50	50	0.725
51	51	0.771
52	52	0.752
53	53	0.094
54	54	0.941
55	55	0.329
56	56	0.971
57	57	0.617
58	58	0.278
59	59	0.777
6	6	0.808
60	60	0.068
61	61	0.986
62	62	0.224
63	63	0.147
64	64	0.887
65	65	0.257
66	66	0.761
67	67	0.367
68	68	0.21
69	69	0.368
7	7	0.811
70	70	0.136
71	71	0.252
72	72	0.643
73	73	0.264
74	74	0.0853
75	75	0.624
76	76	0.93
77	77	0.812
78	78	0.198
79	79	0.596
8	8	0.207
80	80	0.414
81	81	0.0162
82	82	0.052
83	83	0.802
84	84	0.49
85	85	0.118
86	86	0.0424
87	87	0.626
88	88	0.976
89	89	0.865
9	9	0.809
90	90	0.834
91	91	0.998
92	92	0.251
93	93	0.945
94	94	0.872
95	95	0.491
96	96	0.351
97	97	0.135
98	98	0.202
99	99	0.93

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12503

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000305,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0005423,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0006598,UBERON:0000158,UBERON:0002532,UBERON:0000924,UBERON:0003081,UBERON:0004871,UBERON:0006601,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005529
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002537
+|accession_numbers=CAGE;DRX008538;DRR009410;DRZ000835;DRZ002220;DRZ012185;DRZ013570
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164528445..164528459,+!p2@PBX1!0.73!14.85!PBX1;;chr19:22235279..22235301,+!p1@ZNF257!0.72!8.61!ZNF257;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.75!NR2F2;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.25!PBX1;;chr20:32274150..32274166,-!p2@E2F1!0.71!8.32!E2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.02!NR2F2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.71!4.16!SMARCE1;;chrX:56258900..56258917,+!p4@KLF8!0.71!4.16!KLF8;;chr19:49140609..49140643,-!p1@DBP!0.70!25.24!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.70!16.63!PAWR;;chr2:46602879..46602899,+!p8@EPAS1!0.70!5.05!EPAS1;;chr3:170075124..170075136,+!p4@SKIL!0.69!5.64!SKIL;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.35!GRHL1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.86!MYCN;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.86!SOX15;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.86!MAFK;;chr9:110252035..110252057,-!p1@KLF4!0.68!69.49!KLF4;;chr17:53342311..53342400,+!p1@HLF!0.68!4.45!HLF;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.59!FOSB;;chr11:2292226..2292270,-!p1@ASCL2!0.66!3.56!ASCL2;;chr14:33403881..33403924,+!p1@NPAS3!0.66!3.56!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!0.66!3.56!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.66!3.56!HIC2;;chr12:80084303..80084332,-!p1@PAWR!0.65!23.46!PAWR;;chr2:238600933..238600985,+!p3@LRRFIP1!0.65!21.98!LRRFIP1;;chr19:36391434..36391450,-!p1@NFKBID!0.65!7.42!NFKBID;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.64!4.75!ZNF700;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.45!L3MBTL4;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.45!NCOA7;;chr8:57123815..57123867,-!p1@PLAG1!0.63!15.44!PLAG1;;chr8:102217679..102217719,-!p2@ZNF706!0.63!13.07!ZNF706;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.53!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.27!IKZF2;;chr2:5832493..5832507,+!p2@SOX11!0.63!3.27!SOX11;;chr3:24536231..24536249,-!p4@THRB!0.63!3.27!THRB;;chr3:24536332..24536358,-!p2@THRB!0.63!3.27!THRB;;chr4:149363475..149363492,-!p2@NR3C2!0.63!3.27!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.63!3.27!HOPX;;chr10:114710430..114710470,+!p30@TCF7L2!0.63!3.27!TCF7L2;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.27!NR3C1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.25!ZNF439;;chr15:67418047..67418093,+!p4@SMAD3!0.62!4.16!SMAD3;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.44!ZNF521;;chr1:41174988..41175047,+!p4@NFYC!0.61!9.21!NFYC;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.05!ZNF702P;;chrX:107018969..107019024,-!p6@TSC22D3!0.60!4.45!TSC22D3;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.86!MEIS1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.60!2.97!LRRFIP1;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.60!2.97!ZBTB8B;;chr6:28048343..28048354,+!p1@ZNF165!0.60!2.97!ZNF165;;chr11:65554528..65554546,+!p1@OVOL1!0.60!2.97!OVOL1;;chr22:41777927..41777971,+!p1@TEF!0.59!29.40!TEF;;chr3:71630690..71630750,-!p11@FOXP1!0.59!5.35!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.45!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.59!4.16!EPAS1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!39.50!SMARCA1;;chr19:12146483..12146546,-!p1@ZNF433!0.58!12.18!ZNF433;;chr9:99180597..99180614,-!p3@ZNF367!0.58!3.27!ZNF367;;chr19:926001..926046,+!p1@ARID3A!0.57!11.28!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.57!3.86!EPAS1;;chr6:35465058..35465077,-!p2@TEAD3!0.57!2.97!TEAD3;;chr6:35464817..35464894,-!p1@TEAD3!0.56!50.48!TEAD3;;chr5:178322893..178322931,+!p1@ZFP2!0.56!4.16!ZFP2;;chr7:15726296..15726315,-!p1@MEOX2!0.56!2.67!MEOX2;;chr7:50343634..50343717,+!p2@IKZF1!0.56!2.67!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.56!2.67!SPI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.56!2.67!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.67!DACH1;;chr19:22966925..22966958,-!p1@ZNF99!0.56!2.67!ZNF99;;chr2:114036488..114036504,-!p1@PAX8!0.56!2.67!PAX8;;chr1:244214577..244214593,+!p1@ZNF238!0.56!2.67!ZNF238;;chr3:128206762..128206781,-!p2@GATA2!0.55!19.90!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.55!17.52!ARID5B;;chr13:74708504..74708549,-!p1@KLF12!0.55!14.25!KLF12;;chr6:108881012..108881034,+!p3@FOXO3!0.55!10.99!FOXO3;;chr17:38465441..38465481,+!p6@RARA!0.55!3.27!RARA;;chr6:168227552..168227609,+!p1@MLLT4!0.54!25.24!MLLT4;;chr19:58220517..58220583,-!p1@ZNF154!0.54!9.50!ZNF154;;chr20:45142154..45142227,-!p1@ZNF334!0.54!5.64!ZNF334;;chr3:170075103..170075114,+!p5@SKIL!0.54!3.56!SKIL;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.97!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.73!PPP1R13L;;chr9:137217986..137218049,+!p3@RXRA!0.53!8.32!RXRA;;chr18:42260059..42260132,+!p1@SETBP1!0.53!4.45!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.53!2.38!ZNF568;;chr1:209979411..209979433,-!p2@IRF6!0.53!2.38!IRF6;;chr5:138643069..138643082,+!p13@MATR3!0.53!2.38!MATR3;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.38!HOXA2;;chr7:31380292..31380351,-!p1@NEUROD6!0.53!2.38!NEUROD6;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.38!EBF3;;chr10:8097357..8097368,+!p15@GATA3!0.53!2.38!GATA3;;chr11:85393886..85393913,-!p3@CREBZF!0.53!2.38!CREBZF;;chrX:56258885..56258896,+!p5@KLF8!0.53!2.38!KLF8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12236-129G4
-|is_a=EFO:0002091;;FF:0000002;;FF:0000010;;FF:0000210
+|is_a=EFO:0002091;;FF:0000010
+|is_obsolete=
+|library_id=CNhs12503
+|library_id_phase_based=2:CNhs12503
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12236
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12236
 |name=amniotic membrane cells, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12503,LSID918,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=4.86972
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=amnion
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12236-129G4;search_select_hide=table117:FF:12236-129G4
 }}

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FF:12236-129G4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0