FF:11237-116D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005461 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005461 | ||
|accession_numbers=CAGE;DRX008260;DRR009132;DRZ000557;DRZ001942;DRZ011907;DRZ013292 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037014;DRR041380;DRZ007022 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.00!112.08!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.72!84.11!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.62!1141.22!HMGA1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.67!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!1.54!37.56!RORB;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.10!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.49!29.60!SIX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!83.09!TWIST2;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.93!PAX9;;chr16:86544113..86544145,+!p1@FOXF1!1.39!28.99!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.36!59.41!OSR1;;chr14:61116183..61116208,-!p1@SIX1!1.35!79.42!SIX1;;chr9:96717629..96717644,-!p1@BARX1!1.35!21.23!BARX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.34!25.32!ZBTB38;;chr1:170632250..170632277,+!p7@PRRX1!1.31!19.60!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!32.46!ZFP106;;chr12:115122318..115122331,-!p2@TBX3!1.28!18.17!TBX3;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.96!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.40!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.24!16.33!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.46!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.22!16.54!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.88!ETV1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.07!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.70!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.75!TOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.33!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.14!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.92!FOXF2;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.45!PPARG;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!16.13!ZBTB38;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.41!RFX8;;chr3:157823517..157823562,-!p1@SHOX2!1.05!11.02!SHOX2;;chr2:102091566..102091581,-!p1@RFX8!1.04!10.00!RFX8;;chr2:45236579..45236596,-!p2@SIX2!1.03!9.60!SIX2;;chr15:57511589..57511608,+!p4@TCF12!1.02!9.39!TCF12;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.74!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr14:37126765..37126799,+!p2@PAX9!0.96!8.17!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.64!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.78!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.96!KDM5D;;chr11:65667884..65667895,-!p2@FOSL1!0.94!30.83!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.27!DRAP1;;chr2:96012397..96012417,+!p3@KCNIP3!0.93!7.55!KCNIP3;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr12:115122303..115122314,-!p6@TBX3!0.91!7.15!TBX3;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.15!TCF4;;chr4:4861385..4861398,+!p1@MSX1!0.90!21.44!MSX1;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.66!TBX18;;chr12:115121770..115121781,-!p4@TBX3!0.90!6.94!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!0.89!157.81!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.89!65.94!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.89!17.15!PPARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.89!6.74!KCNIP3;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.17!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.53!PRRX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.88!6.53!POU3F3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.42!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.94!TWIST1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.33!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.33!ZFY;;chr20:39946361..39946379,-!p2@ZHX3!0.85!19.19!ZHX3;;chrX:66763856..66763896,+!p1@AR!0.85!8.98!AR;;chr7:14029312..14029325,-!p4@ETV1!0.85!7.55!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.85!6.74!ETV1;;chr20:55205825..55205847,+!p2@TFAP2C!0.85!6.12!TFAP2C;;chr12:115121802..115121814,-!p5@TBX3!0.84!5.92!TBX3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.92!RUNX1T1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.72!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.72!FOXC2;;chr12:115121962..115121987,-!p1@TBX3!0.82!51.04!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.81!31.64!RARG;;chr10:28034739..28034756,-!p1@MKX!0.81!5.51!MKX;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.51!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.31!PAX3;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.70!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.78!9.39!NFIX;;chr2:96012353..96012378,+!p4@KCNIP3!0.77!4.90!KCNIP3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.90!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.85!FOSL1;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.31!NR2F1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.76!4.70!RUNX1T1;;chr3:141121820..141121838,+!p9@ZBTB38!0.76!4.70!ZBTB38;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.41!SOX15;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.17!CREB3L1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.49!ALX1;;chr1:75600067..75600094,+!p2@LHX8!0.74!4.49!LHX8;;chr5:321810..321877,+!p1@AHRR!0.73!15.31!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.84!EBF1;;chr18:52989031..52989079,-!p2@TCF4!0.73!11.02!TCF4;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.80!DRAP1;;chr8:116673894..116673913,-!p12@TRPS1!0.72!4.29!TRPS1;;chr1:170632310..170632321,+!p15@PRRX1!0.72!4.29!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!533.25!HMGA1;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.72!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.71!5.10!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.08!HMGA2;;chr18:52969674..52969685,-!p24@TCF4!0.71!4.08!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.70!6.53!ETV4;;chrX:66763815..66763854,+!p2@AR!0.70!5.51!AR;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.92!ZBTB16;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.88!FOXF2;;chr2:172949484..172949522,+!p1@DLX1!0.69!3.88!DLX1;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.96!HMGA2;;chr1:25256756..25256774,-!p1@RUNX3!0.68!7.76!RUNX3;;chr19:53496768..53496799,-!p1@ZNF702P!0.68!6.33!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.72!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.10!TBX2;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.67!DLX1;;chr6:134210243..134210257,+!p1@TCF21!0.67!3.67!TCF21;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.67!HMGA2;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.87!ZBTB38;;chr10:31607702..31607755,+!p3@ZEB1!0.66!4.29!ZEB1;;chr12:96588143..96588185,+!p1@ELK3!0.65!49.41!ELK3;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.19!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.96!SATB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.92!ZBTB16;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.75!HIF1A;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.10!SATB2;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.27!CREB3L1;;chr12:115122262..115122271,-!p7@TBX3!0.63!3.27!TBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.64!NR2F1;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.76!NR4A3;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.90!HMGA2;;chr6:34204973..34204990,+!p4@HMGA1!0.60!48.59!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.59!AHR;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.30!IFI16;;chr14:61116168..61116180,-!p2@SIX1!0.60!3.47!SIX1;;chr12:96588219..96588263,+!p2@ELK3!0.59!24.91!ELK3;;chr5:124082322..124082364,-!p1@ZNF608!0.59!8.57!ZNF608;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.86!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!0.58!11.43!DPF3;;chr11:47279504..47279563,+!p1@NR1H3!0.58!7.35!NR1H3;;chr7:17338239..17338262,+!p2@AHR!0.57!24.91!AHR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!8.98!SMARCA2;;chr12:24715376..24715432,-!p1@SOX5!0.57!3.67!SOX5;;chr8:128748308..128748324,+!p2@MYC!0.56!92.07!MYC;;chr5:34929947..34930005,+!p3@DNAJC21!0.56!8.98!DNAJC21;;chr9:102584159..102584174,+!p2@NR4A3!0.56!5.31!NR4A3;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.10!FOXP2;;chr6:50786591..50786614,+!p1@TFAP2B!0.56!2.65!TFAP2B;;chr3:141121871..141121885,+!p13@ZBTB38!0.56!2.65!ZBTB38;;chr9:96717678..96717689,-!p2@BARX1!0.56!2.65!BARX1;;chr11:65687158..65687216,+!p4@DRAP1!0.55!18.17!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.55!3.47!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.54!16.13!HIF1A;;chr14:24837368..24837401,+!p1@NFATC4!0.54!6.74!NFATC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.54!2.86!CREB3L1;;chr10:31607811..31607837,+!p6@ZEB1!0.54!2.45!ZEB1;;chr6:1389824..1389840,+!p3@FOXF2!0.54!2.45!FOXF2;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr1:170633245..170633256,+!p14@PRRX1!0.54!2.45!PRRX1;;chr1:200008734..200008765,+!p2@NR5A2!0.54!2.45!NR5A2;;chr9:77112225..77112238,+!p2@RORB!0.54!2.45!RORB;;chr3:12329339..12329356,+!p5@PPARG!0.54!2.45!PPARG;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.58!SREBF1;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.70!BNC2;;chr11:707063..707088,-!p4@DEAF1!0.53!3.27!DEAF1;;chr9:16870659..16870675,-!p2@BNC2!0.53!3.06!BNC2;;chr10:31608127..31608156,+!p1@ZEB1!0.52!54.92!ZEB1;;chr8:49833948..49833973,-!p2@SNAI2!0.52!18.58!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.49!TBX2;;chr15:37390482..37390572,-!p7@MEIS2!0.52!3.47!MEIS2;;chr8:116681194..116681214,-!p1@TRPS1!0.51!26.95!TRPS1;;chr21:47063625..47063658,+!p1@PCBP3!0.51!12.45!PCBP3;;chr17:41623009..41623053,-!p4@ETV4!0.51!4.08!ETV4;;chr15:67391010..67391046,+!p13@SMAD3!0.51!2.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.51!2.25!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.51!2.25!ETV4;;chr19:13136057..13136085,+!p11@NFIX!0.51!2.25!NFIX;;chr14:37126814..37126834,+!p4@PAX9!0.51!2.25!PAX9;;chr1:158969727..158969749,+!p11@IFI16!0.51!2.25!IFI16;;chr1:44513995..44514031,+!p1@KLF17!0.51!2.25!KLF17;;chr8:49833978..49833996,-!p1@SNAI2!0.50!58.80!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.50!11.64!ZFHX4;;chr20:39946400..39946423,-!p3@ZHX3!0.50!4.70!ZHX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.50!2.86!TFAP2A;;chr6:155635583..155635644,-!p1@TFB1M!0.49!36.14!TFB1M;;chr5:43067636..43067674,+!p6@ZNF131!0.49!3.06!ZNF131;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.43!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.48!4.90!ZBTB20;;chr5:178368186..178368238,+!p1@ZNF454!0.48!4.29!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.48!3.88!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.48!2.45!BNC1;;chr19:9609272..9609297,-!p1@ZNF560!0.48!2.04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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.00!112.08!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.72!84.11!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.62!1141.22!HMGA1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.67!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!1.54!37.56!RORB;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.10!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.49!29.60!SIX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!83.09!TWIST2;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.93!PAX9;;chr16:86544113..86544145,+!p1@FOXF1!1.39!28.99!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.36!59.41!OSR1;;chr14:61116183..61116208,-!p1@SIX1!1.35!79.42!SIX1;;chr9:96717629..96717644,-!p1@BARX1!1.35!21.23!BARX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.34!25.32!ZBTB38;;chr1:170632250..170632277,+!p7@PRRX1!1.31!19.60!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!32.46!ZFP106;;chr12:115122318..115122331,-!p2@TBX3!1.28!18.17!TBX3;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.96!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.40!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.24!16.33!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.46!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.22!16.54!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.88!ETV1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.07!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.70!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.75!TOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.33!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.14!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.92!FOXF2;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.45!PPARG;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!16.13!ZBTB38;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.41!RFX8;;chr3:157823517..157823562,-!p1@SHOX2!1.05!11.02!SHOX2;;chr2:102091566..102091581,-!p1@RFX8!1.04!10.00!RFX8;;chr2:45236579..45236596,-!p2@SIX2!1.03!9.60!SIX2;;chr15:57511589..57511608,+!p4@TCF12!1.02!9.39!TCF12;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.74!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr14:37126765..37126799,+!p2@PAX9!0.96!8.17!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.64!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.78!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.96!KDM5D;;chr11:65667884..65667895,-!p2@FOSL1!0.94!30.83!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.27!DRAP1;;chr2:96012397..96012417,+!p3@KCNIP3!0.93!7.55!KCNIP3;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr12:115122303..115122314,-!p6@TBX3!0.91!7.15!TBX3;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.15!TCF4;;chr4:4861385..4861398,+!p1@MSX1!0.90!21.44!MSX1;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.66!TBX18;;chr12:115121770..115121781,-!p4@TBX3!0.90!6.94!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!0.89!157.81!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.89!65.94!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.89!17.15!PPARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.89!6.74!KCNIP3;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.17!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.53!PRRX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.88!6.53!POU3F3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.42!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.94!TWIST1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.33!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.33!ZFY;;chr20:39946361..39946379,-!p2@ZHX3!0.85!19.19!ZHX3;;chrX:66763856..66763896,+!p1@AR!0.85!8.98!AR;;chr7:14029312..14029325,-!p4@ETV1!0.85!7.55!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.85!6.74!ETV1;;chr20:55205825..55205847,+!p2@TFAP2C!0.85!6.12!TFAP2C;;chr12:115121802..115121814,-!p5@TBX3!0.84!5.92!TBX3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.92!RUNX1T1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.72!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.72!FOXC2;;chr12:115121962..115121987,-!p1@TBX3!0.82!51.04!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.81!31.64!RARG;;chr10:28034739..28034756,-!p1@MKX!0.81!5.51!MKX;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.51!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.31!PAX3;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.70!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.78!9.39!NFIX;;chr2:96012353..96012378,+!p4@KCNIP3!0.77!4.90!KCNIP3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.90!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.85!FOSL1;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.31!NR2F1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.76!4.70!RUNX1T1;;chr3:141121820..141121838,+!p9@ZBTB38!0.76!4.70!ZBTB38;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.41!SOX15;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.17!CREB3L1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.49!ALX1;;chr1:75600067..75600094,+!p2@LHX8!0.74!4.49!LHX8;;chr5:321810..321877,+!p1@AHRR!0.73!15.31!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.84!EBF1;;chr18:52989031..52989079,-!p2@TCF4!0.73!11.02!TCF4;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.80!DRAP1;;chr8:116673894..116673913,-!p12@TRPS1!0.72!4.29!TRPS1;;chr1:170632310..170632321,+!p15@PRRX1!0.72!4.29!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!533.25!HMGA1;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.72!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.71!5.10!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.08!HMGA2;;chr18:52969674..52969685,-!p24@TCF4!0.71!4.08!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.70!6.53!ETV4;;chrX:66763815..66763854,+!p2@AR!0.70!5.51!AR;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.92!ZBTB16;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.88!FOXF2;;chr2:172949484..172949522,+!p1@DLX1!0.69!3.88!DLX1;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.96!HMGA2;;chr1:25256756..25256774,-!p1@RUNX3!0.68!7.76!RUNX3;;chr19:53496768..53496799,-!p1@ZNF702P!0.68!6.33!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.72!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.10!TBX2;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.67!DLX1;;chr6:134210243..134210257,+!p1@TCF21!0.67!3.67!TCF21;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.67!HMGA2;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.87!ZBTB38;;chr10:31607702..31607755,+!p3@ZEB1!0.66!4.29!ZEB1;;chr12:96588143..96588185,+!p1@ELK3!0.65!49.41!ELK3;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.19!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.96!SATB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.92!ZBTB16;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.75!HIF1A;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.10!SATB2;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.27!CREB3L1;;chr12:115122262..115122271,-!p7@TBX3!0.63!3.27!TBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.64!NR2F1;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.76!NR4A3;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.90!HMGA2;;chr6:34204973..34204990,+!p4@HMGA1!0.60!48.59!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.59!AHR;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.30!IFI16;;chr14:61116168..61116180,-!p2@SIX1!0.60!3.47!SIX1;;chr12:96588219..96588263,+!p2@ELK3!0.59!24.91!ELK3;;chr5:124082322..124082364,-!p1@ZNF608!0.59!8.57!ZNF608;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.86!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!0.58!11.43!DPF3;;chr11:47279504..47279563,+!p1@NR1H3!0.58!7.35!NR1H3;;chr7:17338239..17338262,+!p2@AHR!0.57!24.91!AHR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!8.98!SMARCA2;;chr12:24715376..24715432,-!p1@SOX5!0.57!3.67!SOX5;;chr8:128748308..128748324,+!p2@MYC!0.56!92.07!MYC;;chr5:34929947..34930005,+!p3@DNAJC21!0.56!8.98!DNAJC21;;chr9:102584159..102584174,+!p2@NR4A3!0.56!5.31!NR4A3;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.10!FOXP2;;chr6:50786591..50786614,+!p1@TFAP2B!0.56!2.65!TFAP2B;;chr3:141121871..141121885,+!p13@ZBTB38!0.56!2.65!ZBTB38;;chr9:96717678..96717689,-!p2@BARX1!0.56!2.65!BARX1;;chr11:65687158..65687216,+!p4@DRAP1!0.55!18.17!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.55!3.47!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.54!16.13!HIF1A;;chr14:24837368..24837401,+!p1@NFATC4!0.54!6.74!NFATC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.54!2.86!CREB3L1;;chr10:31607811..31607837,+!p6@ZEB1!0.54!2.45!ZEB1;;chr6:1389824..1389840,+!p3@FOXF2!0.54!2.45!FOXF2;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr1:170633245..170633256,+!p14@PRRX1!0.54!2.45!PRRX1;;chr1:200008734..200008765,+!p2@NR5A2!0.54!2.45!NR5A2;;chr9:77112225..77112238,+!p2@RORB!0.54!2.45!RORB;;chr3:12329339..12329356,+!p5@PPARG!0.54!2.45!PPARG;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.58!SREBF1;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.70!BNC2;;chr11:707063..707088,-!p4@DEAF1!0.53!3.27!DEAF1;;chr9:16870659..16870675,-!p2@BNC2!0.53!3.06!BNC2;;chr10:31608127..31608156,+!p1@ZEB1!0.52!54.92!ZEB1;;chr8:49833948..49833973,-!p2@SNAI2!0.52!18.58!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.49!TBX2;;chr15:37390482..37390572,-!p7@MEIS2!0.52!3.47!MEIS2;;chr8:116681194..116681214,-!p1@TRPS1!0.51!26.95!TRPS1;;chr21:47063625..47063658,+!p1@PCBP3!0.51!12.45!PCBP3;;chr17:41623009..41623053,-!p4@ETV4!0.51!4.08!ETV4;;chr15:67391010..67391046,+!p13@SMAD3!0.51!2.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.51!2.25!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.51!2.25!ETV4;;chr19:13136057..13136085,+!p11@NFIX!0.51!2.25!NFIX;;chr14:37126814..37126834,+!p4@PAX9!0.51!2.25!PAX9;;chr1:158969727..158969749,+!p11@IFI16!0.51!2.25!IFI16;;chr1:44513995..44514031,+!p1@KLF17!0.51!2.25!KLF17;;chr8:49833978..49833996,-!p1@SNAI2!0.50!58.80!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.50!11.64!ZFHX4;;chr20:39946400..39946423,-!p3@ZHX3!0.50!4.70!ZHX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.50!2.86!TFAP2A;;chr6:155635583..155635644,-!p1@TFB1M!0.49!36.14!TFB1M;;chr5:43067636..43067674,+!p6@ZNF131!0.49!3.06!ZNF131;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.43!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.48!4.90!ZBTB20;;chr5:178368186..178368238,+!p1@ZNF454!0.48!4.29!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.48!3.88!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.48!2.45!BNC1;;chr19:9609272..9609297,-!p1@ZNF560!0.48!2.04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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11237-116D4 | |id=FF:11237-116D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |||
|library_id=CNhs10866 | |||
|library_id_phase_based=2:CNhs10866 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11237 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACAGTG.11237 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11237 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACAGTG.11237 | |||
|name=Fibroblast - Gingival, donor1 | |name=Fibroblast - Gingival, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10866,LSID702,release008,COMPLETED | |profile_hcage=CNhs10866,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0116202781284286,0,0.0281549376317313,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.152758534912623,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.103955322999594,0,0,0,0,0,0,0,0,0.0161260261017313,0,0,0,0.259263298720939,0,0,0,-0.0969923612426051,0,0,-0.0166615327839657,0,0,0,0,0,0,0,0,0.0806820944291313,0,0,0,0,0,0,0,0,0.00455729532614169,0.0403410472145656,0,0.121348637236306,0,0,0,0,0.103744813512758,0,0,-0.154844481693344,-0.058438867783246,0,0.0806820944291313,0.0403410472145656,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427439045080611,0.0806820944291313,0,0,-0.0412839675918899,-0.121745745202993,0,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC2625 | |rna_catalog_number=SC2625 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D4 | |rna_tube_id=116D4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.ACAGTG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=ZNF238:1.82452905274;PDX1:1.38493970686;NKX2-2,8:1.11781821258;PAX4:1.0377719361;FOX{I1,J2}:0.901412995684;MYBL2:0.871118000345;GFI1B:0.784686028166;NR3C1:0.771699198438;NFATC1..3:0.733602816823;NKX6-1,2:0.724122787906;TOPORS:0.667467259871;HES1:0.662192593757;AIRE:0.656377740901;EN1,2:0.635054060894;TFAP4:0.6221111426;ALX4:0.616371404769;LHX3,4:0.608516965193;TGIF1:0.574907799624;NFIX:0.566064340136;EBF1:0.557054708747;GZF1:0.529612752876;TLX1..3_NFIC{dimer}:0.512963650539;AR:0.510464212364;MZF1:0.493259700022;FOXP1:0.488664643624;TEAD1:0.482089371374;FOXD3:0.481233872652;NKX3-1:0.475290100043;TBX4,5:0.474968792484;GTF2A1,2:0.461929863811;TP53:0.456599696002;PRRX1,2:0.452851649552;SOX17:0.447939919318;NFE2L2:0.446986017598;ADNP_IRX_SIX_ZHX:0.43887940318;bHLH_family:0.414483418092;YY1:0.414478212768;HOX{A5,B5}:0.410514189067;TAL1_TCF{3,4,12}:0.40915794522;STAT1,3:0.40526484751;PITX1..3:0.400344310053;HOX{A4,D4}:0.394509881909;HAND1,2:0.39442252054;FOX{F1,F2,J1}:0.376449250292;MTF1:0.372549246607;TEF:0.363865119509;FOXA2:0.357854324189;XBP1:0.355684747065;GTF2I:0.344278579286;BACH2:0.342186113285;AHR_ARNT_ARNT2:0.340002433332;GFI1:0.339623955178;FOXO1,3,4:0.338079863476;TFCP2:0.336932034426;STAT5{A,B}:0.333719022484;ELK1,4_GABP{A,B1}:0.332848805513;CRX:0.331797015745;NR1H4:0.33001820797;NRF1:0.31481646574;POU3F1..4:0.287605371767;ZNF143:0.285353842558;PAX5:0.285158593602;ZBTB16:0.276674634701;CEBPA,B_DDIT3:0.271828942712;NFE2:0.259594590149;HSF1,2:0.246894718206;NHLH1,2:0.218210512654;ZBTB6:0.214949421794;HMGA1,2:0.201237300737;SP1:0.199939211603;MAZ:0.194366681238;RXR{A,B,G}:0.172465732207;ZIC1..3:0.16444332723;RBPJ:0.156227596829;POU1F1:0.142186580155;MYB:0.132408405256;FOS_FOS{B,L1}_JUN{B,D}:0.120028062115;ONECUT1,2:0.115656636822;ARID5B:0.106953246931;HLF:0.0854081594227;HOX{A6,A7,B6,B7}:0.0725914134085;PRDM1:0.0678751555981;SRF:0.0589863532205;HNF4A_NR2F1,2:0.0557748505331;SPZ1:0.0427174255459;ATF6:0.0426743552106;ZFP161:0.0418199278245;ZNF423:0.0392897271521;NFY{A,B,C}:0.0308513501606;TFDP1:0.0298375917422;DBP:0.0255391073522;PAX6:0.0198449234899;TFAP2{A,C}:0.0175905345411;KLF4:0.0172161509729;DMAP1_NCOR{1,2}_SMARC:0.0157747420373;PATZ1:0.0152608770879;UFEwm:0.0150182500811;ELF1,2,4:0.0129503005229;NKX3-2:0.011058427107;HBP1_HMGB_SSRP1_UBTF:0.00966320107679;MYFfamily:0.00889843739999;NKX2-1,4:0.00389439583444;FOSL2:-0.00297601766667;PAX8:-0.00320466093674;FOXL1:-0.0131777851076;ESR1:-0.0134936759573;BPTF:-0.0282606229554;SOX5:-0.0389500347972;MAFB:-0.0440169484117;HNF1A:-0.0455007490286;NANOG{mouse}:-0.0622208019542;EVI1:-0.0633331343672;NANOG:-0.0638722492461;LEF1_TCF7_TCF7L1,2:-0.0884141337883;XCPE1{core}:-0.0907310140765;POU6F1:-0.0949154481366;T:-0.0985151078271;HIC1:-0.12248950569;IRF1,2:-0.125432180322;PAX3,7:-0.134238598085;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.136643983573;RFX1:-0.137300164553;HOXA9_MEIS1:-0.145814189146;ESRRA:-0.149794915422;FOXN1:-0.167329757226;EGR1..3:-0.181673305672;CDC5L:-0.18418364581;SREBF1,2:-0.184986028111;CREB1:-0.191621666065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.197026555961;FOXQ1:-0.20977250049;E2F1..5:-0.234281030631;IRF7:-0.237839562538;MEF2{A,B,C,D}:-0.248917766983;NKX2-3_NKX2-5:-0.25511854221;PPARG:-0.259153263221;NFE2L1:-0.272967860718;NFIL3:-0.279170153007;FOX{D1,D2}:-0.299631014372;GATA4:-0.30155538846;MED-1{core}:-0.301881769561;MTE{core}:-0.320470839461;STAT2,4,6:-0.331808808969;GLI1..3:-0.333890115683;RFX2..5_RFXANK_RFXAP:-0.335152153868;ETS1,2:-0.344297999895;CUX2:-0.345341635402;TLX2:-0.345674457071;TBP:-0.365369880391;IKZF1:-0.380885113879;SPIB:-0.38796017833;RUNX1..3:-0.394152229304;GATA6:-0.406730917899;ALX1:-0.412165858347;GCM1,2:-0.426311779584;ATF5_CREB3:-0.435276253374;TFAP2B:-0.438643856085;SPI1:-0.446967591669;REST:-0.45036453797;PAX1,9:-0.453760524521;ZNF384:-0.455351469553;ZNF148:-0.460708919629;PBX1:-0.46654152161;NFKB1_REL_RELA:-0.487600667934;FOXP3:-0.505175765124;RREB1:-0.506504301864;HIF1A:-0.539611259227;MYOD1:-0.554081190018;HMX1:-0.565297340351;FOXM1:-0.579499126968;ATF4:-0.583591454598;PAX2:-0.591745028035;POU5F1:-0.646516914516;RORA:-0.669230018112;SOX2:-0.670507638087;SMAD1..7,9:-0.684117834358;CDX1,2,4:-0.688434241691;SOX{8,9,10}:-0.704340908181;SNAI1..3:-0.718025762546;BREu{core}:-0.721800631537;LMO2:-0.722437205614;JUN:-0.73002908641;OCT4_SOX2{dimer}:-0.746520950846;IKZF2:-0.809617697064;NR6A1:-0.819268153267;ZEB1:-0.831832727761;ATF2:-0.841870371206;NR5A1,2:-0.880988124991;POU2F1..3:-0.912024020943;VSX1,2:-0.929505211375;RXRA_VDR{dimer}:-0.987050381308;EP300:-1.42890335333 | |top_motifs=ZNF238:1.82452905274;PDX1:1.38493970686;NKX2-2,8:1.11781821258;PAX4:1.0377719361;FOX{I1,J2}:0.901412995684;MYBL2:0.871118000345;GFI1B:0.784686028166;NR3C1:0.771699198438;NFATC1..3:0.733602816823;NKX6-1,2:0.724122787906;TOPORS:0.667467259871;HES1:0.662192593757;AIRE:0.656377740901;EN1,2:0.635054060894;TFAP4:0.6221111426;ALX4:0.616371404769;LHX3,4:0.608516965193;TGIF1:0.574907799624;NFIX:0.566064340136;EBF1:0.557054708747;GZF1:0.529612752876;TLX1..3_NFIC{dimer}:0.512963650539;AR:0.510464212364;MZF1:0.493259700022;FOXP1:0.488664643624;TEAD1:0.482089371374;FOXD3:0.481233872652;NKX3-1:0.475290100043;TBX4,5:0.474968792484;GTF2A1,2:0.461929863811;TP53:0.456599696002;PRRX1,2:0.452851649552;SOX17:0.447939919318;NFE2L2:0.446986017598;ADNP_IRX_SIX_ZHX:0.43887940318;bHLH_family:0.414483418092;YY1:0.414478212768;HOX{A5,B5}:0.410514189067;TAL1_TCF{3,4,12}:0.40915794522;STAT1,3:0.40526484751;PITX1..3:0.400344310053;HOX{A4,D4}:0.394509881909;HAND1,2:0.39442252054;FOX{F1,F2,J1}:0.376449250292;MTF1:0.372549246607;TEF:0.363865119509;FOXA2:0.357854324189;XBP1:0.355684747065;GTF2I:0.344278579286;BACH2:0.342186113285;AHR_ARNT_ARNT2:0.340002433332;GFI1:0.339623955178;FOXO1,3,4:0.338079863476;TFCP2:0.336932034426;STAT5{A,B}:0.333719022484;ELK1,4_GABP{A,B1}:0.332848805513;CRX:0.331797015745;NR1H4:0.33001820797;NRF1:0.31481646574;POU3F1..4:0.287605371767;ZNF143:0.285353842558;PAX5:0.285158593602;ZBTB16:0.276674634701;CEBPA,B_DDIT3:0.271828942712;NFE2:0.259594590149;HSF1,2:0.246894718206;NHLH1,2:0.218210512654;ZBTB6:0.214949421794;HMGA1,2:0.201237300737;SP1:0.199939211603;MAZ:0.194366681238;RXR{A,B,G}:0.172465732207;ZIC1..3:0.16444332723;RBPJ:0.156227596829;POU1F1:0.142186580155;MYB:0.132408405256;FOS_FOS{B,L1}_JUN{B,D}:0.120028062115;ONECUT1,2:0.115656636822;ARID5B:0.106953246931;HLF:0.0854081594227;HOX{A6,A7,B6,B7}:0.0725914134085;PRDM1:0.0678751555981;SRF:0.0589863532205;HNF4A_NR2F1,2:0.0557748505331;SPZ1:0.0427174255459;ATF6:0.0426743552106;ZFP161:0.0418199278245;ZNF423:0.0392897271521;NFY{A,B,C}:0.0308513501606;TFDP1:0.0298375917422;DBP:0.0255391073522;PAX6:0.0198449234899;TFAP2{A,C}:0.0175905345411;KLF4:0.0172161509729;DMAP1_NCOR{1,2}_SMARC:0.0157747420373;PATZ1:0.0152608770879;UFEwm:0.0150182500811;ELF1,2,4:0.0129503005229;NKX3-2:0.011058427107;HBP1_HMGB_SSRP1_UBTF:0.00966320107679;MYFfamily:0.00889843739999;NKX2-1,4:0.00389439583444;FOSL2:-0.00297601766667;PAX8:-0.00320466093674;FOXL1:-0.0131777851076;ESR1:-0.0134936759573;BPTF:-0.0282606229554;SOX5:-0.0389500347972;MAFB:-0.0440169484117;HNF1A:-0.0455007490286;NANOG{mouse}:-0.0622208019542;EVI1:-0.0633331343672;NANOG:-0.0638722492461;LEF1_TCF7_TCF7L1,2:-0.0884141337883;XCPE1{core}:-0.0907310140765;POU6F1:-0.0949154481366;T:-0.0985151078271;HIC1:-0.12248950569;IRF1,2:-0.125432180322;PAX3,7:-0.134238598085;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.136643983573;RFX1:-0.137300164553;HOXA9_MEIS1:-0.145814189146;ESRRA:-0.149794915422;FOXN1:-0.167329757226;EGR1..3:-0.181673305672;CDC5L:-0.18418364581;SREBF1,2:-0.184986028111;CREB1:-0.191621666065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.197026555961;FOXQ1:-0.20977250049;E2F1..5:-0.234281030631;IRF7:-0.237839562538;MEF2{A,B,C,D}:-0.248917766983;NKX2-3_NKX2-5:-0.25511854221;PPARG:-0.259153263221;NFE2L1:-0.272967860718;NFIL3:-0.279170153007;FOX{D1,D2}:-0.299631014372;GATA4:-0.30155538846;MED-1{core}:-0.301881769561;MTE{core}:-0.320470839461;STAT2,4,6:-0.331808808969;GLI1..3:-0.333890115683;RFX2..5_RFXANK_RFXAP:-0.335152153868;ETS1,2:-0.344297999895;CUX2:-0.345341635402;TLX2:-0.345674457071;TBP:-0.365369880391;IKZF1:-0.380885113879;SPIB:-0.38796017833;RUNX1..3:-0.394152229304;GATA6:-0.406730917899;ALX1:-0.412165858347;GCM1,2:-0.426311779584;ATF5_CREB3:-0.435276253374;TFAP2B:-0.438643856085;SPI1:-0.446967591669;REST:-0.45036453797;PAX1,9:-0.453760524521;ZNF384:-0.455351469553;ZNF148:-0.460708919629;PBX1:-0.46654152161;NFKB1_REL_RELA:-0.487600667934;FOXP3:-0.505175765124;RREB1:-0.506504301864;HIF1A:-0.539611259227;MYOD1:-0.554081190018;HMX1:-0.565297340351;FOXM1:-0.579499126968;ATF4:-0.583591454598;PAX2:-0.591745028035;POU5F1:-0.646516914516;RORA:-0.669230018112;SOX2:-0.670507638087;SMAD1..7,9:-0.684117834358;CDX1,2,4:-0.688434241691;SOX{8,9,10}:-0.704340908181;SNAI1..3:-0.718025762546;BREu{core}:-0.721800631537;LMO2:-0.722437205614;JUN:-0.73002908641;OCT4_SOX2{dimer}:-0.746520950846;IKZF2:-0.809617697064;NR6A1:-0.819268153267;ZEB1:-0.831832727761;ATF2:-0.841870371206;NR5A1,2:-0.880988124991;POU2F1..3:-0.912024020943;VSX1,2:-0.929505211375;RXRA_VDR{dimer}:-0.987050381308;EP300:-1.42890335333 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11237-116D4;search_select_hide=table117:FF:11237-116D4 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Fibroblast - Gingival, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10866 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10866
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10866
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.891 |
| 10 | 10 | 0.197 |
| 100 | 100 | 0.964 |
| 101 | 101 | 0.773 |
| 102 | 102 | 0.362 |
| 103 | 103 | 0.889 |
| 104 | 104 | 0.75 |
| 105 | 105 | 0.79 |
| 106 | 106 | 0.0564 |
| 107 | 107 | 0.886 |
| 108 | 108 | 0.974 |
| 109 | 109 | 0.636 |
| 11 | 11 | 0.879 |
| 110 | 110 | 0.0892 |
| 111 | 111 | 0.643 |
| 112 | 112 | 0.263 |
| 113 | 113 | 7.45984e-4 |
| 114 | 114 | 0.458 |
| 115 | 115 | 0.47 |
| 116 | 116 | 0.468 |
| 117 | 117 | 0.018 |
| 118 | 118 | 0.927 |
| 119 | 119 | 0.774 |
| 12 | 12 | 0.44 |
| 120 | 120 | 0.885 |
| 121 | 121 | 0.525 |
| 122 | 122 | 0.0111 |
| 123 | 123 | 0.86 |
| 124 | 124 | 0.762 |
| 125 | 125 | 0.808 |
| 126 | 126 | 0.436 |
| 127 | 127 | 0.881 |
| 128 | 128 | 0.923 |
| 129 | 129 | 0.498 |
| 13 | 13 | 0.14 |
| 130 | 130 | 0.124 |
| 131 | 131 | 0.705 |
| 132 | 132 | 0.43 |
| 133 | 133 | 0.887 |
| 134 | 134 | 0.217 |
| 135 | 135 | 0.0315 |
| 136 | 136 | 0.729 |
| 137 | 137 | 0.194 |
| 138 | 138 | 0.592 |
| 139 | 139 | 0.0406 |
| 14 | 14 | 0.366 |
| 140 | 140 | 0.982 |
| 141 | 141 | 0.0684 |
| 142 | 142 | 0.15 |
| 143 | 143 | 0.402 |
| 144 | 144 | 0.187 |
| 145 | 145 | 0.186 |
| 146 | 146 | 0.189 |
| 147 | 147 | 0.041 |
| 148 | 148 | 0.772 |
| 149 | 149 | 0.707 |
| 15 | 15 | 0.348 |
| 150 | 150 | 0.785 |
| 151 | 151 | 0.699 |
| 152 | 152 | 0.562 |
| 153 | 153 | 0.031 |
| 154 | 154 | 0.706 |
| 155 | 155 | 0.0326 |
| 156 | 156 | 0.759 |
| 157 | 157 | 0.222 |
| 158 | 158 | 1.9784e-4 |
| 159 | 159 | 0.0497 |
| 16 | 16 | 0.818 |
| 160 | 160 | 0.967 |
| 161 | 161 | 0.567 |
| 162 | 162 | 0.702 |
| 163 | 163 | 0.612 |
| 164 | 164 | 0.199 |
| 165 | 165 | 0.541 |
| 166 | 166 | 0.98 |
| 167 | 167 | 0.824 |
| 168 | 168 | 0.871 |
| 169 | 169 | 0.0644 |
| 17 | 17 | 0.915 |
| 18 | 18 | 0.852 |
| 19 | 19 | 0.0356 |
| 2 | 2 | 0.69 |
| 20 | 20 | 0.688 |
| 21 | 21 | 0.0277 |
| 22 | 22 | 0.305 |
| 23 | 23 | 0.754 |
| 24 | 24 | 0.47 |
| 25 | 25 | 0.116 |
| 26 | 26 | 0.793 |
| 27 | 27 | 0.44 |
| 28 | 28 | 0.471 |
| 29 | 29 | 0.816 |
| 3 | 3 | 0.308 |
| 30 | 30 | 0.773 |
| 31 | 31 | 0.847 |
| 32 | 32 | 0.0648 |
| 33 | 33 | 0.583 |
| 34 | 34 | 0.309 |
| 35 | 35 | 0.227 |
| 36 | 36 | 0.0932 |
| 37 | 37 | 0.144 |
| 38 | 38 | 0.795 |
| 39 | 39 | 0.603 |
| 4 | 4 | 0.0421 |
| 40 | 40 | 0.0669 |
| 41 | 41 | 0.0887 |
| 42 | 42 | 0.25 |
| 43 | 43 | 0.923 |
| 44 | 44 | 0.034 |
| 45 | 45 | 0.797 |
| 46 | 46 | 0.714 |
| 47 | 47 | 0.439 |
| 48 | 48 | 0.991 |
| 49 | 49 | 0.988 |
| 5 | 5 | 0.738 |
| 50 | 50 | 0.0981 |
| 51 | 51 | 0.896 |
| 52 | 52 | 0.592 |
| 53 | 53 | 0.42 |
| 54 | 54 | 0.714 |
| 55 | 55 | 0.0333 |
| 56 | 56 | 0.985 |
| 57 | 57 | 0.209 |
| 58 | 58 | 0.285 |
| 59 | 59 | 0.731 |
| 6 | 6 | 0.443 |
| 60 | 60 | 0.0661 |
| 61 | 61 | 0.46 |
| 62 | 62 | 0.394 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.35 |
| 65 | 65 | 0.415 |
| 66 | 66 | 0.395 |
| 67 | 67 | 0.897 |
| 68 | 68 | 0.865 |
| 69 | 69 | 0.628 |
| 7 | 7 | 0.197 |
| 70 | 70 | 0.635 |
| 71 | 71 | 0.798 |
| 72 | 72 | 0.994 |
| 73 | 73 | 0.431 |
| 74 | 74 | 0.0595 |
| 75 | 75 | 0.868 |
| 76 | 76 | 0.25 |
| 77 | 77 | 0.176 |
| 78 | 78 | 0.277 |
| 79 | 79 | 0.373 |
| 8 | 8 | 0.547 |
| 80 | 80 | 0.13 |
| 81 | 81 | 0.776 |
| 82 | 82 | 0.244 |
| 83 | 83 | 0.488 |
| 84 | 84 | 0.344 |
| 85 | 85 | 0.252 |
| 86 | 86 | 0.829 |
| 87 | 87 | 0.0755 |
| 88 | 88 | 0.551 |
| 89 | 89 | 0.611 |
| 9 | 9 | 0.8 |
| 90 | 90 | 0.552 |
| 91 | 91 | 0.808 |
| 92 | 92 | 0.274 |
| 93 | 93 | 0.733 |
| 94 | 94 | 0.147 |
| 95 | 95 | 0.421 |
| 96 | 96 | 0.711 |
| 97 | 97 | 0.714 |
| 98 | 98 | 0.64 |
| 99 | 99 | 2.60464e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10866
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
