FF:12131-128D7: Difference between revisions

Latest revision as of 18:31, 4 June 2020

Name:	granulocyte macrophage progenitor, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12519
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	granulocyte macrophage progenitor
cell line	NA
company	NA
collaboration	Lennartsson
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005398

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12519		CAGE		DRX008082		DRR008954

Accession ID Hg19

Library id		BAM		CTSS
CNhs12519		DRZ000379		DRZ001764

Accession ID Hg38

Library id		BAM		CTSS
CNhs12519		DRZ011729		DRZ013114

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.447
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.3
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.474
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-1.049
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.298
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.868
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0888
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.272
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.516
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.262
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.357
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.551
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12519

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.111
MA0003.1	MA0003.1	0.956
MA0004.1	MA0004.1	0.209
MA0006.1	MA0006.1	0.333
MA0007.1	MA0007.1	0.606
MA0009.1	MA0009.1	0.749
MA0014.1	MA0014.1	0.975
MA0017.1	MA0017.1	0.901
MA0018.2	MA0018.2	4.97156e-5
MA0019.1	MA0019.1	0.467
MA0024.1	MA0024.1	1.84111e-6
MA0025.1	MA0025.1	2.28722e-4
MA0027.1	MA0027.1	0.107
MA0028.1	MA0028.1	0.331
MA0029.1	MA0029.1	0.369
MA0030.1	MA0030.1	0.0731
MA0031.1	MA0031.1	0.236
MA0035.2	MA0035.2	0.0752
MA0038.1	MA0038.1	0.88
MA0039.2	MA0039.2	0.523
MA0040.1	MA0040.1	0.0654
MA0041.1	MA0041.1	0.0858
MA0042.1	MA0042.1	0.111
MA0043.1	MA0043.1	3.89389e-6
MA0046.1	MA0046.1	0.0104
MA0047.2	MA0047.2	0.0915
MA0048.1	MA0048.1	0.883
MA0050.1	MA0050.1	0.138
MA0051.1	MA0051.1	0.101
MA0052.1	MA0052.1	0.831
MA0055.1	MA0055.1	0.592
MA0057.1	MA0057.1	0.661
MA0058.1	MA0058.1	0.254
MA0059.1	MA0059.1	0.71
MA0060.1	MA0060.1	1.00921e-4
MA0061.1	MA0061.1	0.136
MA0062.2	MA0062.2	3.68118e-6
MA0065.2	MA0065.2	0.0852
MA0066.1	MA0066.1	0.0141
MA0067.1	MA0067.1	0.0032
MA0068.1	MA0068.1	0.118
MA0069.1	MA0069.1	0.115
MA0070.1	MA0070.1	0.0577
MA0071.1	MA0071.1	0.891
MA0072.1	MA0072.1	0.781
MA0073.1	MA0073.1	0.989
MA0074.1	MA0074.1	0.313
MA0076.1	MA0076.1	0.0284
MA0077.1	MA0077.1	0.837
MA0078.1	MA0078.1	0.673
MA0079.2	MA0079.2	0.0308
MA0080.2	MA0080.2	4.37997e-11
MA0081.1	MA0081.1	4.73384e-4
MA0083.1	MA0083.1	0.0459
MA0084.1	MA0084.1	0.838
MA0087.1	MA0087.1	0.968
MA0088.1	MA0088.1	0.324
MA0090.1	MA0090.1	1.76956e-4
MA0091.1	MA0091.1	0.832
MA0092.1	MA0092.1	0.112
MA0093.1	MA0093.1	0.162
MA0099.2	MA0099.2	0.21
MA0100.1	MA0100.1	1.33188e-4
MA0101.1	MA0101.1	0.918
MA0102.2	MA0102.2	7.49852e-4
MA0103.1	MA0103.1	0.31
MA0104.2	MA0104.2	0.207
MA0105.1	MA0105.1	5.40494e-5
MA0106.1	MA0106.1	0.0806
MA0107.1	MA0107.1	0.478
MA0108.2	MA0108.2	2.50496e-5
MA0111.1	MA0111.1	0.282
MA0112.2	MA0112.2	9.40551e-5
MA0113.1	MA0113.1	0.655
MA0114.1	MA0114.1	0.376
MA0115.1	MA0115.1	0.414
MA0116.1	MA0116.1	0.0109
MA0117.1	MA0117.1	0.418
MA0119.1	MA0119.1	0.0282
MA0122.1	MA0122.1	0.137
MA0124.1	MA0124.1	0.0965
MA0125.1	MA0125.1	0.868
MA0131.1	MA0131.1	0.279
MA0135.1	MA0135.1	0.0277
MA0136.1	MA0136.1	1.90476e-9
MA0137.2	MA0137.2	0.847
MA0138.2	MA0138.2	0.175
MA0139.1	MA0139.1	0.0984
MA0140.1	MA0140.1	0.411
MA0141.1	MA0141.1	0.118
MA0142.1	MA0142.1	0.83
MA0143.1	MA0143.1	0.901
MA0144.1	MA0144.1	0.931
MA0145.1	MA0145.1	0.0723
MA0146.1	MA0146.1	0.571
MA0147.1	MA0147.1	0.361
MA0148.1	MA0148.1	0.712
MA0149.1	MA0149.1	0.944
MA0150.1	MA0150.1	0.287
MA0152.1	MA0152.1	0.0693
MA0153.1	MA0153.1	0.571
MA0154.1	MA0154.1	0.0714
MA0155.1	MA0155.1	0.861
MA0156.1	MA0156.1	4.87411e-7
MA0157.1	MA0157.1	0.824
MA0159.1	MA0159.1	0.0202
MA0160.1	MA0160.1	0.564
MA0162.1	MA0162.1	0.133
MA0163.1	MA0163.1	0.0127
MA0164.1	MA0164.1	0.982
MA0258.1	MA0258.1	0.00602
MA0259.1	MA0259.1	0.594

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12519

Novel motif	Logo	P-value
1	1	0.0246
10	10	0.552
100	100	0.194
101	101	0.797
102	102	0.831
103	103	0.797
104	104	0.941
105	105	0.981
106	106	0.551
107	107	0.246
108	108	0.283
109	109	0.359
11	11	0.111
110	110	0.0773
111	111	0.194
112	112	0.644
113	113	0.508
114	114	0.172
115	115	0.279
116	116	0.134
117	117	0.588
118	118	0.687
119	119	0.0508
12	12	0.745
120	120	0.308
121	121	0.954
122	122	0.617
123	123	0.0652
124	124	0.341
125	125	0.178
126	126	0.415
127	127	0.21
128	128	0.939
129	129	0.46
13	13	0.319
130	130	0.542
131	131	0.0654
132	132	0.222
133	133	0.636
134	134	0.245
135	135	0.303
136	136	0.319
137	137	0.0137
138	138	0.605
139	139	0.43
14	14	0.983
140	140	0.929
141	141	0.738
142	142	0.724
143	143	0.951
144	144	0.474
145	145	0.145
146	146	0.767
147	147	0.146
148	148	0.0912
149	149	0.252
15	15	0.857
150	150	0.74
151	151	0.618
152	152	0.765
153	153	0.184
154	154	0.452
155	155	0.0172
156	156	0.567
157	157	0.3
158	158	0.251
159	159	0.664
16	16	0.0359
160	160	0.0865
161	161	0.821
162	162	0.221
163	163	0.862
164	164	0.616
165	165	0.44
166	166	0.815
167	167	0.43
168	168	0.395
169	169	0.00503
17	17	0.213
18	18	0.357
19	19	0.0482
2	2	0.762
20	20	0.984
21	21	0.169
22	22	0.891
23	23	0.173
24	24	0.49
25	25	0.923
26	26	0.862
27	27	0.876
28	28	0.812
29	29	0.913
3	3	0.0727
30	30	0.963
31	31	0.523
32	32	1.95615e-4
33	33	0.354
34	34	0.615
35	35	0.33
36	36	0.345
37	37	0.212
38	38	0.454
39	39	0.329
4	4	0.695
40	40	0.234
41	41	0.574
42	42	0.411
43	43	0.126
44	44	0.0163
45	45	0.761
46	46	0.0955
47	47	0.144
48	48	0.214
49	49	0.356
5	5	0.457
50	50	0.832
51	51	0.649
52	52	0.963
53	53	0.878
54	54	0.806
55	55	0.533
56	56	0.304
57	57	0.155
58	58	0.573
59	59	0.284
6	6	0.288
60	60	0.718
61	61	0.689
62	62	0.449
63	63	0.1
64	64	0.192
65	65	0.0957
66	66	0.547
67	67	0.6
68	68	0.581
69	69	0.167
7	7	0.838
70	70	0.0176
71	71	0.0898
72	72	0.898
73	73	0.451
74	74	0.696
75	75	0.472
76	76	0.491
77	77	0.062
78	78	0.172
79	79	0.049
8	8	0.049
80	80	0.265
81	81	0.274
82	82	0.0469
83	83	0.524
84	84	0.979
85	85	0.0885
86	86	0.742
87	87	0.122
88	88	0.12
89	89	0.0135
9	9	0.723
90	90	0.658
91	91	0.344
92	92	0.0129
93	93	0.878
94	94	0.397
95	95	0.925
96	96	0.342
97	97	0.892
98	98	0.395
99	99	0.0305

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12519

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000070 granulocyte macrophage progenitor cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000557 (granulocyte monocyte progenitor cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000070 (granulocyte macrophage progenitor cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005398
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000837
+|accession_numbers=CAGE;DRX008082;DRR008954;DRZ000379;DRZ001764;DRZ011729;DRZ013114
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0000763,CL:0002371,CL:0000255,CL:0000557
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000070
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.76!577.41!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.31!201.84!AFF3;;chr7:50344289..50344323,+!p1@IKZF1!2.23!168.63!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!2.19!153.30!AFF3;;chr6:135502501..135502546,+!p1@MYB!2.08!143.08!MYB;;chr11:47400078..47400106,-!p1@SPI1!2.04!108.58!SPI1;;chr7:50344251..50344288,+!p3@IKZF1!1.97!93.26!IKZF1;;chr6:135502408..135502459,+!p2@MYB!1.90!90.70!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.84!274.66!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.76!70.26!SATB1;;chr7:115670804..115670825,-!p1@TFEC!1.72!51.10!TFEC;;chr3:71631151..71631194,-!p15@FOXP1!1.69!53.65!FOXP1;;chr19:13213662..13213686,-!p1@LYL1!1.68!67.71!LYL1;;chr9:117150254..117150271,-!p1@AKNA!1.67!121.36!AKNA;;chr19:36391434..36391450,-!p1@NFKBID!1.67!88.15!NFKBID;;chr12:11802753..11802834,+!p2@ETV6!1.64!199.28!ETV6;;chr21:39870339..39870443,-!p1@ERG!1.62!40.88!ERG;;chr7:50343634..50343717,+!p2@IKZF1!1.58!37.05!IKZF1;;chr6:144385698..144385742,-!p2@PLAGL1!1.57!43.43!PLAGL1;;chr2:68592406..68592424,+!p1@PLEK!1.57!35.77!PLEK;;chr11:47400062..47400077,-!p2@SPI1!1.55!34.49!SPI1;;chrX:101186981..101187030,-!p1@ZMAT1!1.54!106.03!ZMAT1;;chr19:45971246..45971265,+!p1@FOSB!1.49!525.04!FOSB;;chr12:54694758..54694805,-!p1@NFE2!1.49!35.77!NFE2;;chr2:145277640..145277771,-!p1@ZEB2!1.48!376.85!ZEB2;;chr20:32274179..32274213,-!p1@E2F1!1.47!183.96!E2F1;;chr14:75745523..75745537,+!p1@FOS!1.46!3194.94!FOS;;chr2:185463247..185463263,+!p1@ZNF804A!1.45!47.27!ZNF804A;;chr6:391743..391759,+!p1@IRF4!1.44!26.83!IRF4;;chr13:72440772..72440847,-!p5@DACH1!1.42!25.55!DACH1;;chr9:110252035..110252057,-!p1@KLF4!1.41!380.68!KLF4;;chr2:157189180..157189290,-!p1@NR4A2!1.41!123.91!NR4A2;;chr2:100758991..100759009,-!p3@AFF3!1.40!24.27!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.40!24.27!KDM5D;;chr19:54058073..54058088,+!p1@ZNF331!1.36!21.72!ZNF331;;chr1:92951607..92951661,-!p1@GFI1!1.36!21.72!GFI1;;chr3:39195075..39195088,-!p1@CSRNP1!1.35!131.58!CSRNP1;;chr6:45390300..45390335,+!p4@RUNX2!1.34!31.94!RUNX2;;chr2:70142232..70142251,+!p1@MXD1!1.33!112.42!MXD1;;chr7:104654690..104654704,+!p2@MLL5!1.33!39.60!MLL5;;chr12:54694807..54694832,-!p3@NFE2!1.33!20.44!NFE2;;chr1:25256756..25256774,-!p1@RUNX3!1.31!35.77!RUNX3;;chr20:50159198..50159299,-!p1@NFATC2!1.31!28.10!NFATC2;;chr21:34143971..34143983,-!p8@GCFC1!1.30!19.16!GCFC1;;chr2:169312725..169312810,+!p1@CERS6!1.28!427.95!CERS6;;chr20:42295713..42295738,+!p2@MYBL2!1.28!104.75!MYBL2;;chr20:32274150..32274166,-!p2@E2F1!1.28!33.21!E2F1;;chr6:45390269..45390298,+!p5@RUNX2!1.28!29.38!RUNX2;;chr6:135502472..135502489,+!p3@MYB!1.28!17.88!MYB;;chr1:156470515..156470542,-!p2@MEF2D!1.27!89.42!MEF2D;;chr7:104654718..104654741,+!p3@MLL5!1.27!25.55!MLL5;;chr12:11802547..11802560,+!p5@ETV6!1.27!24.27!ETV6;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!22.99!ZBTB16;;chr20:31350184..31350200,+!p1@DNMT3B!1.22!31.94!DNMT3B;;chr19:54041669..54041697,+!p2@ZNF331!1.21!15.33!ZNF331;;chr2:43453734..43453751,-!p1@ZFP36L2!1.20!1529.13!ZFP36L2;;chr20:42295745..42295765,+!p1@MYBL2!1.20!240.16!MYBL2;;chr3:71630980..71631110,-!p3@FOXP1!1.20!51.10!FOXP1;;chrX:131623982..131624011,-!p6@MBNL3!1.18!20.44!MBNL3;;chr3:39195139..39195150,-!p3@CSRNP1!1.15!16.61!CSRNP1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.15!16.61!L3MBTL4;;chr7:99070527..99070542,+!p2@ZNF789!1.14!28.10!ZNF789;;chr17:56565257..56565283,-!p2@HSF5!1.14!12.77!HSF5;;chr21:40032884..40032915,-!p2@ERG!1.14!12.77!ERG;;chr3:71631217..71631234,-!p33@FOXP1!1.14!12.77!FOXP1;;chr10:35416172..35416184,+!p13@CREM!1.14!12.77!CREM;;chr11:47400045..47400060,-!p6@SPI1!1.14!12.77!SPI1;;chr2:238600789..238600925,+!p1@LRRFIP1!1.13!247.83!LRRFIP1;;chr7:152133059..152133102,-!p1@MLL3!1.13!195.45!MLL3;;chr14:75988771..75988826,+!p1@BATF!1.13!16.61!BATF;;chr4:140098339..140098392,-!p1@ELF2!1.11!97.09!ELF2;;chr14:89883412..89883478,-!p3@FOXN3!1.11!38.32!FOXN3;;chr6:15246200..15246214,+!p2@JARID2!1.11!33.21!JARID2;;chr1:8763463..8763499,-!p6@RERE!1.10!31.94!RERE;;chr8:71315615..71315638,-!p3@NCOA2!1.10!30.66!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.10!30.66!CREM;;chr5:142782823..142782854,-!p3@NR3C1!1.10!16.61!NR3C1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.10!11.50!LRRFIP1;;chr11:47400032..47400043,-!p5@SPI1!1.10!11.50!SPI1;;chr1:25256439..25256476,-!p3@RUNX3!1.10!11.50!RUNX3;;chr7:148581327..148581347,-!p2@EZH2!1.09!38.32!EZH2;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.55!NR4A3;;chrX:131624056..131624069,-!p2@MBNL3!1.09!15.33!MBNL3;;chr14:45722360..45722415,-!p1@MIS18BP1!1.08!171.18!MIS18BP1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.08!60.04!LRRFIP1;;chr21:34144115..34144138,-!p2@GCFC1!1.08!31.94!GCFC1;;chr18:53257001..53257015,-!p5@TCF4!1.08!19.16!TCF4;;chr11:130184470..130184533,-!p2@ZBTB44!1.07!29.38!ZBTB44;;chr16:68119440..68119480,+!p4@NFATC3!1.07!17.88!NFATC3;;chr22:29196492..29196503,-!p3@XBP1!1.07!16.61!XBP1;;chr6:7107999..7108031,+!p2@RREB1!1.06!56.21!RREB1;;chrX:106960221..106960236,-!p3@TSC22D3!1.06!29.38!TSC22D3;;chr14:103059006..103059017,+!p2@RCOR1!1.06!16.61!RCOR1;;chr19:18392422..18392440,-!p1@JUND!1.05!1405.21!JUND;;chr14:103058948..103059005,+!p1@RCOR1!1.05!283.60!RCOR1;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.44!DACH1;;chr11:47399996..47400014,-!p4@SPI1!1.05!10.22!SPI1;;chr2:100759060..100759073,-!p8@AFF3!1.05!10.22!AFF3;;chr2:102091566..102091581,-!p1@RFX8!1.05!10.22!RFX8;;chr3:63953435..63953499,+!p1@ATXN7!1.05!10.22!ATXN7;;chr3:71631248..71631268,-!p26@FOXP1!1.05!10.22!FOXP1;;chrX:129244430..129244442,-!p5@ELF4!1.05!10.22!ELF4;;chr6:45390399..45390418,+!p15@RUNX2!1.05!10.22!RUNX2;;chr2:28615716..28615733,+!p1@FOSL2!1.04!477.77!FOSL2;;chr21:36260980..36261011,-!p1@RUNX1!1.04!289.98!RUNX1;;chr21:34144024..34144111,-!p1@GCFC1!1.04!210.78!GCFC1;;chr7:99070499..99070523,+!p1@ZNF789!1.04!53.65!ZNF789;;chr9:110252074..110252079,-!p3@KLF4!1.04!16.61!KLF4;;chr11:128563948..128564003,+!p1@FLI1!1.03!118.80!FLI1;;chr10:3827371..3827386,-!p2@KLF6!1.03!83.04!KLF6;;chr5:88178983..88179012,-!p1@MEF2C!1.03!76.65!MEF2C;;chr17:40440481..40440550,+!p1@STAT5A!1.03!71.54!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!1.03!71.54!ELF4;;chr14:90085458..90085557,-!p1@FOXN3!1.02!99.64!FOXN3;;chr7:148581360..148581425,-!p1@EZH2!1.02!47.27!EZH2;;chr2:61108650..61108687,+!p2@REL!1.02!47.27!REL;;chr9:127533519..127533573,-!p2@NR6A1!1.02!11.50!NR6A1;;chr2:61108695..61108753,+!p1@REL!1.01!65.15!REL;;chr19:22034809..22034878,-!p2@ZNF43!1.01!33.21!ZNF43;;chr8:145669791..145669834,-!p1@TONSL!1.01!26.83!TONSL;;chr6:91006518..91006570,-!p1@BACH2!1.01!21.72!BACH2;;chr19:56988677..56988729,-!p1@ZNF667!1.01!16.61!ZNF667;;chr6:45390343..45390388,+!p10@RUNX2!1.01!12.77!RUNX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!247.83!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.00!58.76!PHTF2;;chr19:58220517..58220583,-!p1@ZNF154!1.00!29.38!ZNF154;;chr4:87928307..87928321,+!p8@AFF1!1.00!20.44!AFF1;;chr10:43932296..43932360,+!p1@ZNF487P!1.00!19.16!ZNF487P;;chr10:98591801..98591841,+!p3@LCOR!1.00!12.77!LCOR;;chr9:99180597..99180614,-!p3@ZNF367!1.00!10.22!ZNF367;;chr3:71630844..71630862,-!p40@FOXP1!1.00!8.94!FOXP1;;chr4:1873100..1873152,+!p1@WHSC1!0.99!68.98!WHSC1;;chr18:77155922..77155939,+!p1@NFATC1!0.99!24.27!NFATC1;;chr20:45142154..45142227,-!p1@ZNF334!0.99!17.88!ZNF334;;chr15:56535468..56535521,-!p2@RFX7!0.99!16.61!RFX7;;chr18:53255415..53255491,-!p1@TCF4!0.98!74.09!TCF4;;chr7:149194843..149194922,-!p2@ZNF746!0.98!44.71!ZNF746;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.32!PCBP3;;chr6:20402102..20402152,+!p1@E2F3!0.98!35.77!E2F3;;chr9:117160738..117160782,-!p2@AKNA!0.98!35.77!AKNA;;chr4:18023350..18023385,-!p1@LCORL!0.97!72.82!LCORL;;chr16:68119324..68119364,+!p1@NFATC3!0.97!38.32!NFATC3;;chrX:131624020..131624048,-!p9@MBNL3!0.97!10.22!MBNL3;;chr19:58071166..58071189,-!p2@ZNF550!0.96!20.44!ZNF550;;chr9:102584241..102584261,+!p4@NR4A3!0.96!12.77!NR4A3;;chrX:101187036..101187056,-!p2@ZMAT1!0.96!8.94!ZMAT1;;chr14:89883509..89883587,-!p2@FOXN3!0.95!56.21!FOXN3;;chr21:36421535..36421610,-!p2@RUNX1!0.95!29.38!RUNX1;;chr9:99180617..99180658,-!p1@ZNF367!0.95!17.88!ZNF367;;chr21:34143999..34144016,-!p4@GCFC1!0.95!14.05!GCFC1;;chr2:208031542..208031595,-!p2@KLF7!0.94!56.21!KLF7;;chr2:185463521..185463557,+!p3@ZNF804A!0.94!7.66!ZNF804A;;chr15:31619140..31619152,+!p11@KLF13!0.94!7.66!KLF13;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.66!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!0.94!7.66!HOXA9;;chr19:57791947..57791956,+!p7@ZNF460!0.94!7.66!ZNF460;;chr19:58545454..58545498,+!p1@ZSCAN1!0.94!7.66!ZSCAN1;;chr11:47399947..47399961,-!p3@SPI1!0.94!7.66!SPI1;;chr12:11802600..11802685,+!p1@ETV6!0.93!118.80!ETV6;;chr12:2986275..2986363,-!p1@FOXM1!0.93!79.20!FOXM1;;chr16:1662351..1662442,+!p1@CRAMP1L!0.93!57.49!CRAMP1L;;chr19:58331073..58331084,+!p3@ZNF587!0.93!29.38!ZNF587;;chr7:1570388..1570418,+!p2@MAFK!0.93!16.61!MAFK;;chr1:23857698..23857733,-!p1@E2F2!0.93!14.05!E2F2;;chr12:72056800..72056834,+!p1@THAP2!0.93!10.22!THAP2;;chr2:208031943..208031978,-!p5@KLF7!0.93!10.22!KLF7;;chr2:25475120..25475176,-!p2@DNMT3A!0.93!10.22!DNMT3A;;chr19:37064145..37064216,-!p1@ZNF529!0.92!65.15!ZNF529;;chr19:19496624..19496660,+!p3@GATAD2A!0.92!34.49!GATAD2A;;chr19:58071201..58071238,-!p1@ZNF550!0.92!26.83!ZNF550;;chr3:101395919..101395930,-!p4@ZBTB11!0.92!10.22!ZBTB11;;chrX:106960180..106960197,-!p2@TSC22D3!0.91!28.10!TSC22D3;;chr2:145277882..145277967,-!p3@ZEB2!0.91!12.77!ZEB2;;chr7:128577972..128578047,+!p1@IRF5!0.91!11.50!IRF5;;chr3:126194866..126194887,-!p3@ZXDC!0.91!8.94!ZXDC;;chr4:87856129..87856186,+!p1@AFF1!0.90!100.92!AFF1;;chr6:106534230..106534254,+!p2@PRDM1!0.90!17.88!PRDM1;;chr10:22292591..22292606,-!p2@DNAJC1!0.90!11.50!DNAJC1;;chr11:113930291..113930339,+!p2@ZBTB16!0.90!11.50!ZBTB16;;chr12:11802690..11802704,+!p4@ETV6!0.90!10.22!ETV6;;chr1:156470494..156470505,-!p3@MEF2D!0.90!10.22!MEF2D;;chr6:126240442..126240459,+!p4@NCOA7!0.90!8.94!NCOA7;;chr14:74226747..74226779,-!p3@C14orf43!0.89!39.60!C14orf43;;chr3:18466787..18466839,-!p1@SATB1!0.89!31.94!SATB1;;chr17:38498402..38498445,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.ctss.bed.gz
 |id=FF:12131-128D7
-|is_a=EFO:0002091;;FF:0000002;;FF:0000070;;FF:0000210
+|is_a=EFO:0002091;;FF:0000070;;FF:0000210
+|is_obsolete=
+|library_id=CNhs12519
+|library_id_phase_based=2:CNhs12519
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12131
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12131
 |name=granulocyte macrophage progenitor, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12519,LSID919,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=0.1728
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=bone marrow
 |top_motifs=MYB:2.37210722674;BREu{core}:2.31506718773;CREB1:2.26572817488;E2F1..5:1.86770770256;FOXN1:1.5739998797;TFDP1:1.30134838639;TFAP2B:1.26415759859;RFX2..5_RFXANK_RFXAP:1.25247743458;TFAP2{A,C}:1.23025495295;PAX5:1.20999880883;ZFP161:1.20058608087;FOXQ1:1.17559665404;EGR1..3:1.16637594272;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14418970285;PAX8:1.10560630179;ZNF148:1.09071048842;ATF4:1.0877580671;FOXA2:1.08038401114;PAX2:1.06774975715;HAND1,2:1.01411748615;HIF1A:1.00705200959;SPI1:0.963798191383;NANOG:0.931559718004;SP1:0.910303172053;SPIB:0.907425737078;TGIF1:0.876169095122;VSX1,2:0.870388946743;ELF1,2,4:0.860803155327;RXR{A,B,G}:0.801863867365;GATA6:0.792672128486;RUNX1..3:0.79230078145;HIC1:0.78832871328;RFX1:0.778887399117;ZNF143:0.770113672168;MTE{core}:0.678424394276;DMAP1_NCOR{1,2}_SMARC:0.676518145722;ETS1,2:0.641282922914;bHLH_family:0.634335875728;NFIL3:0.621885849959;NANOG{mouse}:0.611925501763;SOX2:0.591039775337;MYOD1:0.589899321227;ATF5_CREB3:0.584771604842;HBP1_HMGB_SSRP1_UBTF:0.570670695874;NHLH1,2:0.564850258483;CUX2:0.557982038227;XBP1:0.54999033377;NFY{A,B,C}:0.517740374813;EP300:0.49269808294;AR:0.465179628078;TEF:0.443474775471;XCPE1{core}:0.437436778517;POU1F1:0.425967222049;POU5F1:0.419956815812;MED-1{core}:0.414497895782;FOX{F1,F2,J1}:0.399633716232;RXRA_VDR{dimer}:0.351787315319;TLX2:0.342065848208;EBF1:0.318538898921;SREBF1,2:0.260060769096;FOX{D1,D2}:0.257694423942;STAT1,3:0.222207182546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220336659627;ESR1:0.201989258738;NFKB1_REL_RELA:0.193506539296;EN1,2:0.185100684385;CDX1,2,4:0.161843886007;NFATC1..3:0.157522998391;PAX6:0.154800279847;TAL1_TCF{3,4,12}:0.133073779514;NR5A1,2:0.122216610621;TFAP4:0.116475330856;LMO2:0.110695601676;IRF1,2:0.0857407124547;MYFfamily:0.0692515991514;MZF1:0.0638019586245;OCT4_SOX2{dimer}:0.0619664122462;FOSL2:0.0596188516436;STAT5{A,B}:0.0498124497592;RORA:0.043093230783;ELK1,4_GABP{A,B1}:0.0394213511159;CRX:0.0384242496707;NFIX:0.0311645808186;ZEB1:0.0291650664598;HNF1A:0.00958541233001;NRF1:0.00141462834536;LEF1_TCF7_TCF7L1,2:-0.00116044012662;MAFB:-0.00957429347741;HLF:-0.0137188642525;GLI1..3:-0.0206008743685;IRF7:-0.033545100646;GCM1,2:-0.0378355098103;FOX{I1,J2}:-0.0402046618728;FOXP3:-0.0489682347928;POU3F1..4:-0.0611251741027;PRRX1,2:-0.0688523071923;CEBPA,B_DDIT3:-0.0969138939413;YY1:-0.108508475664;MEF2{A,B,C,D}:-0.123023161814;POU2F1..3:-0.134417407619;ZNF238:-0.15279727313;SOX17:-0.155944405327;MAZ:-0.159209581226;TBX4,5:-0.16631509561;PAX3,7:-0.178921530831;REST:-0.191036738647;ALX1:-0.196541353889;FOS_FOS{B,L1}_JUN{B,D}:-0.208564807831;SOX5:-0.219083636442;HES1:-0.242456963328;ONECUT1,2:-0.249472095636;PPARG:-0.253094990276;PBX1:-0.259093993759;SOX{8,9,10}:-0.26828572781;MTF1:-0.276043528541;BACH2:-0.330914406245;AHR_ARNT_ARNT2:-0.331789966744;HNF4A_NR2F1,2:-0.360181812183;PATZ1:-0.368328615481;FOXO1,3,4:-0.397223016538;NFE2:-0.413006045511;T:-0.417184949369;STAT2,4,6:-0.436534692187;ZBTB6:-0.4456114754;ATF2:-0.447933936023;RBPJ:-0.478731429987;NKX2-3_NKX2-5:-0.479802525423;NKX2-1,4:-0.48335236151;ESRRA:-0.493530426333;ATF6:-0.500252481305;NR3C1:-0.511132435723;HOX{A6,A7,B6,B7}:-0.521729303032;GTF2I:-0.588692079175;GZF1:-0.589356543624;HMX1:-0.618488841155;GTF2A1,2:-0.64094830583;NFE2L2:-0.671270836569;JUN:-0.67742259678;BPTF:-0.688904142433;MYBL2:-0.754562822072;GFI1:-0.770969232381;SNAI1..3:-0.802392365267;SPZ1:-0.805829752023;HOX{A4,D4}:-0.849711373775;NKX2-2,8:-0.863155167664;CDC5L:-0.8761243839;HOXA9_MEIS1:-0.929407720264;DBP:-0.92993343537;LHX3,4:-0.938027372126;PAX4:-0.939612428155;IKZF2:-0.954538512514;PRDM1:-0.957085475007;SRF:-1.00702099029;TFCP2:-1.01639152856;PDX1:-1.03228862211;ADNP_IRX_SIX_ZHX:-1.04394218809;ZIC1..3:-1.09419151092;RREB1:-1.10321995296;ZNF423:-1.10469993676;HOX{A5,B5}:-1.11565400296;GATA4:-1.13838245099;GFI1B:-1.16287732177;HSF1,2:-1.20151446254;TP53:-1.20773985672;EVI1:-1.22255998637;TEAD1:-1.22732853945;SMAD1..7,9:-1.23614204214;POU6F1:-1.26758847829;TLX1..3_NFIC{dimer}:-1.26920173938;FOXP1:-1.31029605136;AIRE:-1.313951783;FOXD3:-1.31407796105;KLF4:-1.33578776748;NKX3-1:-1.36004419784;ALX4:-1.39536165936;TOPORS:-1.40562238985;ARID5B:-1.44813382829;PITX1..3:-1.47067687785;NR1H4:-1.47527795381;NFE2L1:-1.49225419664;NKX3-2:-1.55135765738;IKZF1:-1.55619055178;NKX6-1,2:-1.58642097857;UFEwm:-1.58988511127;NR6A1:-1.64542316887;HMGA1,2:-1.69604707546;ZNF384:-1.80809707785;FOXM1:-1.84733571926;FOXL1:-1.87354571692;ZBTB16:-2.15184482388;TBP:-2.15310855688;PAX1,9:-2.61663927682
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12131-128D7;search_select_hide=table117:FF:12131-128D7
 }}

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FF:12131-128D7: Difference between revisions

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Latest revision as of 18:31, 4 June 2020

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