FF:11273-116H4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005625 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005625 | ||
|HumanCAGEScanFiles=NCig10048;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Mammary%2520Epithelial%2520Cell%252c%2520donor1.NCig10048.11273-116H4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008327;DRR009199;DRZ000624;DRZ002009;DRZ011974;DRZ013359 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037093;DRR041459;DRZ007101 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000088 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.13!149.03!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.87!73.89!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.66!44.87!ZBED2;;chr1:209979411..209979433,-!p2@IRF6!1.66!44.42!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.64!48.90!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.59!46.48!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.08!IRX2;;chr1:6479968..6479986,-!p1@HES2!1.45!27.40!HES2;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.46!KLF5;;chr2:19558373..19558392,-!p1@OSR1!1.38!61.97!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.38!28.03!POU2F3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.36!22.03!TFCP2L1;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.03!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.18!39.58!EPAS1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.43!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!21.76!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.77!PPP1R13L;;chr8:49833948..49833973,-!p2@SNAI2!1.11!76.48!SNAI2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.10!11.73!ZBED1;;chr15:101069113..101069169,-!p1@CERS3!1.09!11.19!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.08!12.54!ZNF385A;;chr7:27205106..27205134,-!p2@HOXA9!1.07!10.75!HOXA9;;chr6:10419768..10419819,-!p6@TFAP2A!1.07!10.66!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.06!41.47!FOSL1;;chr3:111314230..111314241,-!p2@ZBED2!1.06!10.57!ZBED2;;chr17:7493405..7493419,-!p1@SOX15!1.04!9.85!SOX15;;chr5:2751785..2751808,-!p2@IRX2!1.04!9.85!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.61!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.98!181.89!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.85!HMGA2;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.15!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.95!7.88!IRX1;;chr15:83953373..83953386,-!p2@BNC1!0.93!7.43!BNC1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.81!DRAP1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.16!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.78!TFAP2C;;chr12:10870927..10870966,-!p5@CSDA!0.88!6.63!CSDA;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.12!FOSL1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.63!FOXD1;;chr6:1312325..1312340,+!p1@FOXQ1!0.86!10.48!FOXQ1;;chr5:3595961..3595975,+!p3@IRX1!0.85!6.09!IRX1;;chr1:209979449..209979460,-!p3@IRF6!0.85!6.00!IRF6;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.23!HMGA2;;chr12:53625966..53626012,-!p2@RARG!0.82!15.58!RARG;;chr11:47236584..47236679,+!p1@DDB2!0.81!64.57!DDB2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.06!DRAP1;;chr2:28618532..28618610,+!p4@FOSL2!0.80!9.58!FOSL2;;chr12:54332608..54332636,+!p1@HOXC13!0.80!5.37!HOXC13;;chr2:178128149..178128198,-!p2@NFE2L2!0.79!29.73!NFE2L2;;chr18:3449720..3449749,+!p2@TGIF1!0.79!11.64!TGIF1;;chr17:38256799..38256815,-!p3@NR1D1!0.79!9.76!NR1D1;;chr17:38256822..38256851,-!p1@NR1D1!0.78!42.72!NR1D1;;chr4:4291837..4291859,-!p2@LYAR!0.78!17.64!LYAR;;chr8:128748308..128748324,+!p2@MYC!0.77!150.64!MYC;;chr17:45928443..45928473,-!p2@SP6!0.77!4.84!SP6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.84!HOXC5;;chr12:80084737..80084763,-!p3@PAWR!0.76!19.61!PAWR;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.57!TFAP2A;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.57!TFAP2C;;chr3:189507460..189507471,+!p3@TP63!0.75!4.57!TP63;;chr10:8096631..8096660,+!p1@GATA3!0.74!5.55!GATA3;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.48!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.00!TWIST1;;chr12:48298765..48298783,-!p2@VDR!0.72!9.49!VDR;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.72!5.91!CEBPG;;chr2:238600933..238600985,+!p3@LRRFIP1!0.71!24.81!LRRFIP1;;chr6:126240380..126240430,+!p2@NCOA7!0.71!11.82!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!0.71!5.02!GATA3;;chr13:73636252..73636307,+!p2@KLF5!0.71!4.93!KLF5;;chr8:102504651..102504683,+!p1@GRHL2!0.71!4.12!GRHL2;;chr17:8027418..8027432,-!p1@HES7!0.71!4.12!HES7;;chr3:193853927..193853944,+!p1@HES1!0.70!148.49!HES1;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.27!ETV4;;chr10:8095593..8095625,+!p3@GATA3!0.70!4.84!GATA3;;chr17:45928521..45928539,-!p1@SP6!0.70!4.03!SP6;;chr16:86600426..86600441,+!p1@FOXC2!0.69!10.57!FOXC2;;chr13:73636516..73636532,+!p3@KLF5!0.69!4.48!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.69!3.94!ZNF165;;chr6:10415263..10415274,-!p8@TFAP2A!0.69!3.85!TFAP2A;;chrX:56258844..56258882,+!p1@KLF8!0.68!5.46!KLF8;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.39!TFAP2A;;chr3:37217736..37217753,-!p2@LRRFIP2!0.67!17.46!LRRFIP2;;chr6:106534192..106534224,+!p1@PRDM1!0.67!11.64!PRDM1;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.11!DRAP1;;chr5:1887052..1887065,-!p2@IRX4!0.66!3.58!IRX4;;chr17:46132044..46132080,+!p4@NFE2L1!0.66!3.58!NFE2L1;;chr5:142780189..142780223,-!p6@NR3C1!0.65!3.49!NR3C1;;chr12:48298785..48298828,-!p1@VDR!0.64!20.60!VDR;;chr1:158979872..158979898,+!p3@IFI16!0.64!11.91!IFI16;;chr3:32023232..32023273,+!p1@ZNF860!0.64!5.10!ZNF860;;chr5:137804484..137804498,+!p2@EGR1!0.63!15.31!EGR1;;chr9:14082760..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| |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.13!149.03!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.87!73.89!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.66!44.87!ZBED2;;chr1:209979411..209979433,-!p2@IRF6!1.66!44.42!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.64!48.90!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.59!46.48!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.08!IRX2;;chr1:6479968..6479986,-!p1@HES2!1.45!27.40!HES2;;chr13:73633131..73633149,+!p1@KLF5!1.39!240.46!KLF5;;chr2:19558373..19558392,-!p1@OSR1!1.38!61.97!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.38!28.03!POU2F3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.36!22.03!TFCP2L1;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.03!ZNF385A;;chr2:46524897..46524911,+!p2@EPAS1!1.18!39.58!EPAS1;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.00!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.43!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!21.76!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.77!PPP1R13L;;chr8:49833948..49833973,-!p2@SNAI2!1.11!76.48!SNAI2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.10!11.73!ZBED1;;chr15:101069113..101069169,-!p1@CERS3!1.09!11.19!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.08!12.54!ZNF385A;;chr7:27205106..27205134,-!p2@HOXA9!1.07!10.75!HOXA9;;chr6:10419768..10419819,-!p6@TFAP2A!1.07!10.66!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.06!41.47!FOSL1;;chr3:111314230..111314241,-!p2@ZBED2!1.06!10.57!ZBED2;;chr17:7493405..7493419,-!p1@SOX15!1.04!9.85!SOX15;;chr5:2751785..2751808,-!p2@IRX2!1.04!9.85!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.61!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.98!181.89!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.97!39.85!HMGA2;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.15!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.95!7.88!IRX1;;chr15:83953373..83953386,-!p2@BNC1!0.93!7.43!BNC1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.81!DRAP1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.16!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.78!TFAP2C;;chr12:10870927..10870966,-!p5@CSDA!0.88!6.63!CSDA;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.12!FOSL1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.63!FOXD1;;chr6:1312325..1312340,+!p1@FOXQ1!0.86!10.48!FOXQ1;;chr5:3595961..3595975,+!p3@IRX1!0.85!6.09!IRX1;;chr1:209979449..209979460,-!p3@IRF6!0.85!6.00!IRF6;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.23!HMGA2;;chr12:53625966..53626012,-!p2@RARG!0.82!15.58!RARG;;chr11:47236584..47236679,+!p1@DDB2!0.81!64.57!DDB2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.06!DRAP1;;chr2:28618532..28618610,+!p4@FOSL2!0.80!9.58!FOSL2;;chr12:54332608..54332636,+!p1@HOXC13!0.80!5.37!HOXC13;;chr2:178128149..178128198,-!p2@NFE2L2!0.79!29.73!NFE2L2;;chr18:3449720..3449749,+!p2@TGIF1!0.79!11.64!TGIF1;;chr17:38256799..38256815,-!p3@NR1D1!0.79!9.76!NR1D1;;chr17:38256822..38256851,-!p1@NR1D1!0.78!42.72!NR1D1;;chr4:4291837..4291859,-!p2@LYAR!0.78!17.64!LYAR;;chr8:128748308..128748324,+!p2@MYC!0.77!150.64!MYC;;chr17:45928443..45928473,-!p2@SP6!0.77!4.84!SP6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.84!HOXC5;;chr12:80084737..80084763,-!p3@PAWR!0.76!19.61!PAWR;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.57!TFAP2A;;chr20:55205825..55205847,+!p2@TFAP2C!0.75!4.57!TFAP2C;;chr3:189507460..189507471,+!p3@TP63!0.75!4.57!TP63;;chr10:8096631..8096660,+!p1@GATA3!0.74!5.55!GATA3;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.48!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.00!TWIST1;;chr12:48298765..48298783,-!p2@VDR!0.72!9.49!VDR;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.72!5.91!CEBPG;;chr2:238600933..238600985,+!p3@LRRFIP1!0.71!24.81!LRRFIP1;;chr6:126240380..126240430,+!p2@NCOA7!0.71!11.82!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!0.71!5.02!GATA3;;chr13:73636252..73636307,+!p2@KLF5!0.71!4.93!KLF5;;chr8:102504651..102504683,+!p1@GRHL2!0.71!4.12!GRHL2;;chr17:8027418..8027432,-!p1@HES7!0.71!4.12!HES7;;chr3:193853927..193853944,+!p1@HES1!0.70!148.49!HES1;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.27!ETV4;;chr10:8095593..8095625,+!p3@GATA3!0.70!4.84!GATA3;;chr17:45928521..45928539,-!p1@SP6!0.70!4.03!SP6;;chr16:86600426..86600441,+!p1@FOXC2!0.69!10.57!FOXC2;;chr13:73636516..73636532,+!p3@KLF5!0.69!4.48!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.69!3.94!ZNF165;;chr6:10415263..10415274,-!p8@TFAP2A!0.69!3.85!TFAP2A;;chrX:56258844..56258882,+!p1@KLF8!0.68!5.46!KLF8;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.39!TFAP2A;;chr3:37217736..37217753,-!p2@LRRFIP2!0.67!17.46!LRRFIP2;;chr6:106534192..106534224,+!p1@PRDM1!0.67!11.64!PRDM1;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.11!DRAP1;;chr5:1887052..1887065,-!p2@IRX4!0.66!3.58!IRX4;;chr17:46132044..46132080,+!p4@NFE2L1!0.66!3.58!NFE2L1;;chr5:142780189..142780223,-!p6@NR3C1!0.65!3.49!NR3C1;;chr12:48298785..48298828,-!p1@VDR!0.64!20.60!VDR;;chr1:158979872..158979898,+!p3@IFI16!0.64!11.91!IFI16;;chr3:32023232..32023273,+!p1@ZNF860!0.64!5.10!ZNF860;;chr5:137804484..137804498,+!p2@EGR1!0.63!15.31!EGR1;;chr9:14082760..14082775,-!p6@NFIB!0.63!5.91!NFIB;;chr3:189507523..189507535,+!p5@TP63!0.63!3.22!TP63;;chr7:28725740..28725778,+!p1@CREB5!0.62!33.67!CREB5;;chr17:41277372..41277418,-!p1@BRCA1!0.62!13.43!BRCA1;;chr2:46524878..46524891,+!p3@EPAS1!0.62!6.18!EPAS1;;chr11:65687222..65687240,+!p7@DRAP1!0.62!4.21!DRAP1;;chr5:1887070..1887114,-!p1@IRX4!0.62!3.13!IRX4;;chr6:126102292..126102329,+!p3@NCOA7!0.61!11.73!NCOA7;;chr6:106534230..106534254,+!p2@PRDM1!0.61!8.69!PRDM1;;chrX:107018969..107019024,-!p6@TSC22D3!0.61!4.48!TSC22D3;;chr1:37945588..37945604,+!p3@ZC3H12A!0.61!3.04!ZC3H12A;;chr8:128748470..128748487,+!p1@MYC!0.60!404.89!MYC;;chr4:4291861..4291913,-!p1@LYAR!0.60!83.29!LYAR;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.39!IFI16;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.45!CSDA;;chr5:134369905..134369972,-!p1@PITX1!0.60!5.02!PITX1;;chr9:129376201..129376225,+!p1@LMX1B!0.60!2.96!LMX1B;;chr12:54393880..54393962,+!p1@HOXC9!0.60!2.96!HOXC9;;chr16:86600870..86600921,+!p2@FOXC2!0.60!2.96!FOXC2;;chr7:27135591..27135658,-!p1@HOXA1!0.59!6.27!HOXA1;;chr20:6748325..6748352,+!p1@BMP2!0.59!4.48!BMP2;;chr20:22564895..22564910,-!p1@FOXA2!0.59!2.87!FOXA2;;chr5:142780237..142780261,-!p7@NR3C1!0.59!2.87!NR3C1;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.58!22.39!SOX7;;chr12:80084279..80084293,-!p8@PAWR!0.58!5.10!PAWR;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.39!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.58!2.78!C14orf43;;chr9:110252035..110252057,-!p1@KLF4!0.57!54.18!KLF4;;chr12:66218443..66218461,+!p8@HMGA2!0.57!3.67!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.57!3.49!TBX18;;chr2:19558327..19558334,-!p2@OSR1!0.57!2.69!OSR1;;chr14:55493763..55493824,-!p1@WDHD1!0.56!24.27!WDHD1;;chr1:158979851..158979865,+!p5@IFI16!0.56!6.72!IFI16;;chr11:113930425..113930471,+!p1@ZBTB16!0.56!4.12!ZBTB16;;chr17:70117153..70117174,+!p1@SOX9!0.55!32.78!SOX9;;chr11:65687158..65687216,+!p4@DRAP1!0.55!18.00!DRAP1;;chr10:96122645..96122675,-!p2@NOC3L!0.55!14.87!NOC3L;;chr11:34642612..34642646,+!p1@EHF!0.55!2.51!EHF;;chr15:83953694..83953708,-!p4@BNC1!0.55!2.51!BNC1;;chr3:141087339..141087387,+!p2@ZBTB38!0.54!32.06!ZBTB38;;chr12:80084303..80084332,-!p1@PAWR!0.54!18.27!PAWR;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.48!ZBTB16;;chr12:66218378..66218401,+!p6@HMGA2!0.54!4.30!HMGA2;;chr13:45010939..45011033,-!p1@TSC22D1!0.53!203.92!TSC22D1;;chr1:8938709..8938720,-!p3@ENO1!0.53!148.76!ENO1;;chr12:77459306..77459365,-!p1@E2F7!0.53!38.51!E2F7;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.53!13.70!TAL1;;chr19:33864571..33864596,+!p2@CEBPG!0.53!6.99!CEBPG;;chr17:41623009..41623053,-!p4@ETV4!0.53!4.30!ETV4;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.13!HOXC4;;chr7:17338324..17338341,+!p3@AHR!0.52!9.58!AHR;;chr11:62369204..62369217,-!p7@MTA2!0.52!6.00!MTA2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.87!FOXD1;;chr3:141087562..141087594,+!p12@ZBTB38!0.52!2.33!ZBTB38;;chr7:17338266..17338282,+!p1@AHR!0.51!31.17!AHR;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.69!ELK3;;chr19:58694421..58694485,+!p1@ZNF274!0.51!14.96!ZNF274;;chr19:21203481..21203504,+!p2@ZNF430!0.51!6.27!ZNF430;;chr3:107244229..107244254,+!p3@BBX!0.51!4.21!BBX;;chr16:54320101..54320125,-!p4@IRX3!0.51!3.49!IRX3;;chr2:113994526..113994556,-!p3@PAX8!0.51!2.24!PAX8;;chr12:66218904..66218913,+!p11@HMGA2!0.51!2.24!HMGA2;;chr18:3450161..3450183,+!p1@TGIF1!0.50!99.14!TGIF1;;chr2:113012592..113012671,-!p1@ZC3H8!0.50!48.99!ZC3H8;;chr9:14314566..14314618,-!p1@NFIB!0.50!34.21!NFIB;;chrX:56258900..56258917,+!p4@KLF8!0.50!2.15!KLF8;;chr20:55205791..55205817,+!p3@TFAP2C!0.50!2.15!TFAP2C;;chr19:33864600..33864732,+!p1@CEBPG!0.49!78.72!CEBPG;;chrX:106960285..106960299,-!p1@TSC22D3!0.49!76.12!TSC22D3;;chr2:85198369..85198483,+!p2@KCMF1!0.49!32.96!KCMF1;;chr4:299227..299272,-!p1@ZNF732!0.49!2.06!ZNF732;;chr12:80084768..80084821,-!p2@PAWR!0.48!18.63!PAWR;;chr12:26277956..26277980,-!p1@BHLHE41!0.48!9.31!BHLHE41;;chr9:14083467..14083483,-!p4@NFIB!0.48!6.09!NFIB;;chrX:56258811..56258838,+!p2@KLF8!0.48!2.96!KLF8;;chr15:67418119..67418162,+!p5@SMAD3!0.48!2.33!SMAD3;;chr12:96588143..96588185,+!p1@ELK3!0.47!32.15!ELK3;;chr2:70142232..70142251,+!p1@MXD1!0.47!14.60!MXD1;;chr11:65686952..65686975,+!p5@DRAP1!0.47!14.42!DRAP1;;chr19:21106081..21106115,+!p2@ZNF85!0.47!7.25!ZNF85;;chr16:54964740..54964789,+!p1@IRX5!0.47!3.13!IRX5;;chr20:51588873..51588953,+!p1@TSHZ2!0.47!2.87!TSHZ2;;chr12:51566562..51566584,-!p2@TFCP2!0.46!6.63!TFCP2;;chr3:169490606..169490621,+!p3@MYNN!0.46!2.87!MYNN;;chr9:110250697..110250738,-!p2@KLF4!0.46!2.33!KLF4;;chr6:10419824..10419840,-!p9@TFAP2A!0.46!1.88!TFAP2A;;chr6:41701581..41701613,-!p2@TFEB!0.46!1.88!TFEB;;chr7:27196217..27196246,-!p2@HOXA7!0.46!1.88!HOXA7;;chr10:135122906..135122921,+!p4@ZNF511!0.46!1.88!ZNF511;;chr12:54332652..54332671,+!p2@HOXC13!0.46!1.88!HOXC13;;chr19:45908286..45908291,-!p3@PPP1R13L!0.46!1.88!PPP1R13L;;chr22:29196547..29196563,-!p2@XBP1!0.45!94.39!XBP1;;chr18:47807845..47807918,-!p1@MBD1!0.45!44.51!MBD1;;chr18:3447536..3447542,+!p23@TGIF1!0.45!1.79!TGIF1;;chr1:209979375..209979386,-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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor1.CNhs11077.11273-116H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11273-116H4 | |id=FF:11273-116H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000088 | ||
|is_obsolete= | |||
|library_id=CNhs11077 | |||
|library_id_phase_based=2:CNhs11077 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11273 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GCCAAT.11273 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11273 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GCCAAT.11273 | |||
|name=Mammary Epithelial Cell, donor1 | |name=Mammary Epithelial Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=NCig10048,,, | |profile_cagescan=NCig10048,,, | ||
|profile_hcage=CNhs11077,LSID724,release008,COMPLETED | |profile_hcage=CNhs11077,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA830-R10a | |rna_catalog_number=CA830-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116H4 | |rna_tube_id=116H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.GCCAAT | |||
|sample_age=29 | |sample_age=29 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365 | |top_motifs=TBX4,5:2.59312049691;TP53:2.51239773796;NKX2-1,4:1.81811550282;VSX1,2:1.71825005273;NKX2-2,8:1.56981654034;PDX1:1.55989702878;TEF:1.47789783123;ZEB1:1.45355641443;ADNP_IRX_SIX_ZHX:1.31699001144;NKX2-3_NKX2-5:1.21055802545;POU1F1:1.09423097031;SNAI1..3:1.07711895247;NR3C1:1.04027702764;CDC5L:0.998657567654;HOX{A4,D4}:0.989596460689;ONECUT1,2:0.908968035708;ELK1,4_GABP{A,B1}:0.859194644079;TEAD1:0.828480606636;EN1,2:0.804919276657;NKX3-2:0.757977658664;PPARG:0.727150204895;EVI1:0.684645347338;bHLH_family:0.644766711687;FOX{I1,J2}:0.643066867206;PAX4:0.622945154144;MYB:0.604353226012;PAX8:0.594402307713;HMGA1,2:0.586365158778;E2F1..5:0.525821359684;NFIL3:0.520261458084;FOS_FOS{B,L1}_JUN{B,D}:0.479424691515;TFDP1:0.477852164606;ARID5B:0.476921298603;UFEwm:0.476676582018;HIF1A:0.467543951204;BACH2:0.460922348529;FOXO1,3,4:0.453772027768;CREB1:0.447136368949;POU6F1:0.429532223137;KLF4:0.417749173256;GFI1:0.386632006442;SOX17:0.363793331997;FOXQ1:0.361021434811;MYOD1:0.353514716354;CEBPA,B_DDIT3:0.320305468351;FOXL1:0.316421144647;ZNF143:0.313445087629;HOX{A5,B5}:0.300040092681;FOSL2:0.297333195527;STAT5{A,B}:0.284437037025;CRX:0.278227175295;FOXM1:0.268803629537;ELF1,2,4:0.266407822193;POU2F1..3:0.261280646758;FOXN1:0.258448441543;MYBL2:0.254498265157;T:0.249900158684;TBP:0.223877492188;XCPE1{core}:0.220064696075;ZBTB16:0.209586408786;PAX1,9:0.206355665854;NR5A1,2:0.20546517927;AR:0.181658718642;POU5F1:0.179988139797;DBP:0.178781984106;ZNF238:0.159136836972;NR1H4:0.144962443589;ATF4:0.115824451906;NRF1:0.112558998844;ZNF148:0.0909022174038;AHR_ARNT_ARNT2:0.0864612511744;HSF1,2:0.0838935254274;IKZF1:0.0834085937783;SMAD1..7,9:0.0783761201;HOX{A6,A7,B6,B7}:0.0396640387809;SP1:0.0334250913709;OCT4_SOX2{dimer}:0.0273256390699;GFI1B:0.024212085691;FOXA2:0.0194642553775;NFY{A,B,C}:0.0185009348635;GLI1..3:-0.00439077910872;TLX2:-0.00622194214409;GATA4:-0.0096756850617;NFIX:-0.011217799499;MTF1:-0.0135802860256;NFE2:-0.0182553000416;EP300:-0.0226103525895;HLF:-0.0308046215027;RXR{A,B,G}:-0.0479255833768;ZIC1..3:-0.0498458002198;AIRE:-0.0503760678644;MAZ:-0.0539457902343;RBPJ:-0.0607665501679;ALX1:-0.0962157925048;LMO2:-0.108179867089;YY1:-0.109372112117;BPTF:-0.113957290179;HNF1A:-0.12745489292;ATF2:-0.138849819784;FOX{F1,F2,J1}:-0.139014899677;ATF5_CREB3:-0.140737064857;PAX5:-0.149456028038;IRF7:-0.153340188958;MTE{core}:-0.164393775541;PAX2:-0.164407212064;ZBTB6:-0.179529385973;IKZF2:-0.18675955688;HES1:-0.198877787374;SOX2:-0.207817932887;POU3F1..4:-0.221113312213;REST:-0.227715894632;FOXP1:-0.235429876703;ZNF384:-0.237409650788;SPI1:-0.240910824824;PITX1..3:-0.245478596014;NFKB1_REL_RELA:-0.275739193459;TOPORS:-0.284621770369;TLX1..3_NFIC{dimer}:-0.298854084524;LEF1_TCF7_TCF7L1,2:-0.303548332498;EGR1..3:-0.309564976877;HNF4A_NR2F1,2:-0.317203853584;PRDM1:-0.323155021367;TFCP2:-0.330179971782;RFX2..5_RFXANK_RFXAP:-0.330738526368;NKX3-1:-0.334369566225;HBP1_HMGB_SSRP1_UBTF:-0.334872963979;TFAP2{A,C}:-0.357072385393;FOXP3:-0.361879805824;RFX1:-0.363630900663;FOXD3:-0.375237177745;GTF2A1,2:-0.381111540697;NR6A1:-0.390319024066;BREu{core}:-0.391140841164;GTF2I:-0.391538434993;ZFP161:-0.396177362264;HAND1,2:-0.400761971575;NHLH1,2:-0.401075320726;CUX2:-0.404264398385;EBF1:-0.405840730391;DMAP1_NCOR{1,2}_SMARC:-0.408346545804;GATA6:-0.41086914476;JUN:-0.421821221997;NFATC1..3:-0.425078218239;ETS1,2:-0.449595908632;LHX3,4:-0.450183386808;RUNX1..3:-0.466545246215;SPIB:-0.476593076869;RXRA_VDR{dimer}:-0.478744953968;SRF:-0.485558131832;PRRX1,2:-0.488262121278;GZF1:-0.495280530451;NANOG:-0.495894140587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.515967719589;ZNF423:-0.523138987934;MED-1{core}:-0.537804198664;PBX1:-0.557009329074;NFE2L2:-0.560042951972;PAX6:-0.561153161089;TFAP4:-0.564135451967;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.564880818093;ALX4:-0.570343891683;HIC1:-0.577052657261;CDX1,2,4:-0.608550583432;NKX6-1,2:-0.610569440834;GCM1,2:-0.651680102347;STAT1,3:-0.671419329296;STAT2,4,6:-0.683168095868;TAL1_TCF{3,4,12}:-0.699570794159;MEF2{A,B,C,D}:-0.713469292131;FOX{D1,D2}:-0.724622515774;ESR1:-0.739464151526;RREB1:-0.792375707025;MYFfamily:-0.802862595573;SOX{8,9,10}:-0.819885725299;IRF1,2:-0.824954805005;TGIF1:-0.850986292203;SPZ1:-0.870965364517;TFAP2B:-0.88141111161;SOX5:-0.889438520558;PATZ1:-0.898538337363;ESRRA:-0.909072890421;XBP1:-0.931858318314;MZF1:-0.958681642211;NFE2L1:-0.974932372136;PAX3,7:-1.00049250445;ATF6:-1.02064669043;SREBF1,2:-1.09508549691;RORA:-1.09531654604;NANOG{mouse}:-1.14934654848;MAFB:-1.17862182916;HMX1:-1.28484850145;HOXA9_MEIS1:-1.42627055365 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11273-116H4;search_select_hide=table117:FF:11273-116H4 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Mammary Epithelial Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11077 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11077
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11077
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.733 |
| 10 | 10 | 0.689 |
| 100 | 100 | 0.593 |
| 101 | 101 | 0.177 |
| 102 | 102 | 0.303 |
| 103 | 103 | 0.199 |
| 104 | 104 | 0.69 |
| 105 | 105 | 0.993 |
| 106 | 106 | 0.437 |
| 107 | 107 | 0.311 |
| 108 | 108 | 0.834 |
| 109 | 109 | 0.00965 |
| 11 | 11 | 0.904 |
| 110 | 110 | 0.177 |
| 111 | 111 | 0.131 |
| 112 | 112 | 0.846 |
| 113 | 113 | 0.0487 |
| 114 | 114 | 0.908 |
| 115 | 115 | 0.73 |
| 116 | 116 | 0.645 |
| 117 | 117 | 0.356 |
| 118 | 118 | 0.811 |
| 119 | 119 | 0.45 |
| 12 | 12 | 0.422 |
| 120 | 120 | 0.0509 |
| 121 | 121 | 0.432 |
| 122 | 122 | 0.506 |
| 123 | 123 | 0.397 |
| 124 | 124 | 0.0155 |
| 125 | 125 | 0.374 |
| 126 | 126 | 0.624 |
| 127 | 127 | 0.456 |
| 128 | 128 | 0.134 |
| 129 | 129 | 0.405 |
| 13 | 13 | 0.0418 |
| 130 | 130 | 0.668 |
| 131 | 131 | 0.19 |
| 132 | 132 | 0.269 |
| 133 | 133 | 0.139 |
| 134 | 134 | 0.209 |
| 135 | 135 | 0.171 |
| 136 | 136 | 0.0104 |
| 137 | 137 | 0.0958 |
| 138 | 138 | 0.446 |
| 139 | 139 | 0.0842 |
| 14 | 14 | 0.438 |
| 140 | 140 | 0.77 |
| 141 | 141 | 0.188 |
| 142 | 142 | 0.263 |
| 143 | 143 | 0.389 |
| 144 | 144 | 0.152 |
| 145 | 145 | 0.897 |
| 146 | 146 | 0.415 |
| 147 | 147 | 0.663 |
| 148 | 148 | 0.218 |
| 149 | 149 | 0.227 |
| 15 | 15 | 0.891 |
| 150 | 150 | 0.262 |
| 151 | 151 | 0.922 |
| 152 | 152 | 0.21 |
| 153 | 153 | 0.252 |
| 154 | 154 | 0.747 |
| 155 | 155 | 0.913 |
| 156 | 156 | 0.632 |
| 157 | 157 | 0.349 |
| 158 | 158 | 0.0446 |
| 159 | 159 | 0.358 |
| 16 | 16 | 0.0508 |
| 160 | 160 | 0.907 |
| 161 | 161 | 0.981 |
| 162 | 162 | 0.45 |
| 163 | 163 | 0.371 |
| 164 | 164 | 0.0945 |
| 165 | 165 | 0.0762 |
| 166 | 166 | 0.356 |
| 167 | 167 | 0.987 |
| 168 | 168 | 0.543 |
| 169 | 169 | 0.337 |
| 17 | 17 | 0.349 |
| 18 | 18 | 0.521 |
| 19 | 19 | 0.566 |
| 2 | 2 | 0.881 |
| 20 | 20 | 0.0727 |
| 21 | 21 | 0.574 |
| 22 | 22 | 0.627 |
| 23 | 23 | 0.887 |
| 24 | 24 | 0.0121 |
| 25 | 25 | 0.675 |
| 26 | 26 | 0.973 |
| 27 | 27 | 0.209 |
| 28 | 28 | 0.122 |
| 29 | 29 | 0.489 |
| 3 | 3 | 0.787 |
| 30 | 30 | 0.307 |
| 31 | 31 | 0.643 |
| 32 | 32 | 0.124 |
| 33 | 33 | 0.0396 |
| 34 | 34 | 0.0284 |
| 35 | 35 | 0.053 |
| 36 | 36 | 0.602 |
| 37 | 37 | 0.527 |
| 38 | 38 | 0.968 |
| 39 | 39 | 0.484 |
| 4 | 4 | 0.462 |
| 40 | 40 | 0.66 |
| 41 | 41 | 0.135 |
| 42 | 42 | 0.673 |
| 43 | 43 | 0.588 |
| 44 | 44 | 0.894 |
| 45 | 45 | 0.698 |
| 46 | 46 | 0.594 |
| 47 | 47 | 0.599 |
| 48 | 48 | 0.189 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.561 |
| 50 | 50 | 0.315 |
| 51 | 51 | 0.385 |
| 52 | 52 | 0.753 |
| 53 | 53 | 0.138 |
| 54 | 54 | 0.72 |
| 55 | 55 | 0.321 |
| 56 | 56 | 0.906 |
| 57 | 57 | 0.24 |
| 58 | 58 | 0.825 |
| 59 | 59 | 0.257 |
| 6 | 6 | 0.978 |
| 60 | 60 | 0.653 |
| 61 | 61 | 0.621 |
| 62 | 62 | 0.517 |
| 63 | 63 | 0.352 |
| 64 | 64 | 0.694 |
| 65 | 65 | 0.255 |
| 66 | 66 | 0.139 |
| 67 | 67 | 0.946 |
| 68 | 68 | 0.135 |
| 69 | 69 | 0.657 |
| 7 | 7 | 0.949 |
| 70 | 70 | 0.0893 |
| 71 | 71 | 0.45 |
| 72 | 72 | 0.904 |
| 73 | 73 | 0.0326 |
| 74 | 74 | 0.872 |
| 75 | 75 | 0.0889 |
| 76 | 76 | 0.385 |
| 77 | 77 | 0.758 |
| 78 | 78 | 0.0428 |
| 79 | 79 | 0.109 |
| 8 | 8 | 0.763 |
| 80 | 80 | 0.367 |
| 81 | 81 | 0.214 |
| 82 | 82 | 0.16 |
| 83 | 83 | 0.798 |
| 84 | 84 | 0.374 |
| 85 | 85 | 0.151 |
| 86 | 86 | 0.513 |
| 87 | 87 | 0.0345 |
| 88 | 88 | 0.711 |
| 89 | 89 | 0.0601 |
| 9 | 9 | 0.137 |
| 90 | 90 | 0.106 |
| 91 | 91 | 0.62 |
| 92 | 92 | 0.153 |
| 93 | 93 | 0.995 |
| 94 | 94 | 0.701 |
| 95 | 95 | 0.013 |
| 96 | 96 | 0.755 |
| 97 | 97 | 0.847 |
| 98 | 98 | 0.369 |
| 99 | 99 | 0.325 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11077
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
