FF:10840-111E3: Difference between revisions

Latest revision as of 15:08, 3 June 2020

Name:	plasma cell leukemia cell line:ARH-77
Species:	Human (Homo sapiens)
Library ID:	CNhs12807
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	33
cell type	plasma cell
cell line	ARH-77
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004916

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12807		CAGE		DRX007985		DRR008857

Accession ID Hg19

Library id		BAM		CTSS
CNhs12807		DRZ000282		DRZ001667

Accession ID Hg38

Library id		BAM		CTSS
CNhs12807		DRZ011632		DRZ013017

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.101
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0182
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.548
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.00912
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0474
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0384
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0474
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0.892
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0474
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0336
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0901
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0928
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.504
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0.0474
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0474
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0666
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.053
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0474
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.7
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.153
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00134
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0474
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0026
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.165
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0474
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.486
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0901
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0474
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0474
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0.0901
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.145
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.356
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0.0474
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0474
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12807

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0139
MA0003.1	MA0003.1	0.522
MA0004.1	MA0004.1	0.0129
MA0006.1	MA0006.1	0.172
MA0007.1	MA0007.1	0.702
MA0009.1	MA0009.1	0.612
MA0014.1	MA0014.1	0.937
MA0017.1	MA0017.1	0.486
MA0018.2	MA0018.2	0.593
MA0019.1	MA0019.1	0.967
MA0024.1	MA0024.1	1.50395e-7
MA0025.1	MA0025.1	0.502
MA0027.1	MA0027.1	0.816
MA0028.1	MA0028.1	2.53444e-5
MA0029.1	MA0029.1	0.327
MA0030.1	MA0030.1	0.106
MA0031.1	MA0031.1	0.603
MA0035.2	MA0035.2	0.113
MA0038.1	MA0038.1	0.133
MA0039.2	MA0039.2	0.964
MA0040.1	MA0040.1	0.11
MA0041.1	MA0041.1	0.227
MA0042.1	MA0042.1	0.466
MA0043.1	MA0043.1	0.949
MA0046.1	MA0046.1	0.252
MA0047.2	MA0047.2	0.852
MA0048.1	MA0048.1	0.936
MA0050.1	MA0050.1	1.39552e-19
MA0051.1	MA0051.1	1.29241e-14
MA0052.1	MA0052.1	0.401
MA0055.1	MA0055.1	0.157
MA0057.1	MA0057.1	0.767
MA0058.1	MA0058.1	0.00846
MA0059.1	MA0059.1	2.43636e-4
MA0060.1	MA0060.1	4.98294e-17
MA0061.1	MA0061.1	3.37274e-9
MA0062.2	MA0062.2	2.02209e-8
MA0065.2	MA0065.2	0.0671
MA0066.1	MA0066.1	0.706
MA0067.1	MA0067.1	0.478
MA0068.1	MA0068.1	0.257
MA0069.1	MA0069.1	0.927
MA0070.1	MA0070.1	0.762
MA0071.1	MA0071.1	0.834
MA0072.1	MA0072.1	0.12
MA0073.1	MA0073.1	0.595
MA0074.1	MA0074.1	0.644
MA0076.1	MA0076.1	5.13093e-8
MA0077.1	MA0077.1	0.446
MA0078.1	MA0078.1	0.107
MA0079.2	MA0079.2	0.32
MA0080.2	MA0080.2	2.99287e-5
MA0081.1	MA0081.1	0.0209
MA0083.1	MA0083.1	0.416
MA0084.1	MA0084.1	0.105
MA0087.1	MA0087.1	0.0903
MA0088.1	MA0088.1	0.0274
MA0090.1	MA0090.1	1.91167e-5
MA0091.1	MA0091.1	0.856
MA0092.1	MA0092.1	0.521
MA0093.1	MA0093.1	0.0106
MA0099.2	MA0099.2	0.00131
MA0100.1	MA0100.1	0.0561
MA0101.1	MA0101.1	1.34007e-7
MA0102.2	MA0102.2	0.354
MA0103.1	MA0103.1	0.0204
MA0104.2	MA0104.2	1.04975e-4
MA0105.1	MA0105.1	4.25612e-8
MA0106.1	MA0106.1	0.903
MA0107.1	MA0107.1	3.70235e-8
MA0108.2	MA0108.2	0.101
MA0111.1	MA0111.1	0.522
MA0112.2	MA0112.2	0.927
MA0113.1	MA0113.1	0.307
MA0114.1	MA0114.1	0.197
MA0115.1	MA0115.1	0.272
MA0116.1	MA0116.1	0.00101
MA0117.1	MA0117.1	0.724
MA0119.1	MA0119.1	0.421
MA0122.1	MA0122.1	0.387
MA0124.1	MA0124.1	0.384
MA0125.1	MA0125.1	0.55
MA0131.1	MA0131.1	0.136
MA0135.1	MA0135.1	0.529
MA0136.1	MA0136.1	3.89651e-8
MA0137.2	MA0137.2	0.425
MA0138.2	MA0138.2	0.973
MA0139.1	MA0139.1	0.231
MA0140.1	MA0140.1	0.00625
MA0141.1	MA0141.1	0.431
MA0142.1	MA0142.1	0.194
MA0143.1	MA0143.1	0.287
MA0144.1	MA0144.1	0.0755
MA0145.1	MA0145.1	0.128
MA0146.1	MA0146.1	0.727
MA0147.1	MA0147.1	4.32092e-5
MA0148.1	MA0148.1	0.268
MA0149.1	MA0149.1	0.238
MA0150.1	MA0150.1	0.546
MA0152.1	MA0152.1	0.172
MA0153.1	MA0153.1	0.0943
MA0154.1	MA0154.1	0.012
MA0155.1	MA0155.1	0.556
MA0156.1	MA0156.1	1.7092e-9
MA0157.1	MA0157.1	0.924
MA0159.1	MA0159.1	0.218
MA0160.1	MA0160.1	0.375
MA0162.1	MA0162.1	0.492
MA0163.1	MA0163.1	2.8517e-8
MA0164.1	MA0164.1	0.262
MA0258.1	MA0258.1	0.514
MA0259.1	MA0259.1	0.0129

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12807

Novel motif	Logo	P-value
1	1	0.143
10	10	0.0245
100	100	0.216
101	101	0.457
102	102	0.473
103	103	0.332
104	104	0.579
105	105	0.479
106	106	0.801
107	107	0.313
108	108	0.938
109	109	0.0963
11	11	0.532
110	110	0.613
111	111	0.044
112	112	0.888
113	113	0.858
114	114	0.726
115	115	0.5
116	116	0.723
117	117	0.0313
118	118	0.56
119	119	0.395
12	12	0.674
120	120	0.871
121	121	0.195
122	122	0.344
123	123	0.202
124	124	0.019
125	125	0.559
126	126	0.132
127	127	0.561
128	128	0.145
129	129	0.294
13	13	0.0447
130	130	0.257
131	131	0.52
132	132	0.121
133	133	0.258
134	134	0.558
135	135	0.642
136	136	0.16
137	137	0.58
138	138	0.558
139	139	0.846
14	14	0.828
140	140	0.203
141	141	0.00515
142	142	0.791
143	143	0.0276
144	144	0.458
145	145	0.758
146	146	0.931
147	147	0.263
148	148	0.172
149	149	0.389
15	15	0.0592
150	150	0.859
151	151	0.161
152	152	0.0571
153	153	0.795
154	154	0.617
155	155	0.108
156	156	0.764
157	157	0.214
158	158	0.412
159	159	0.332
16	16	0.356
160	160	0.418
161	161	0.0374
162	162	0.558
163	163	0.948
164	164	0.958
165	165	0.912
166	166	0.253
167	167	0.134
168	168	0.719
169	169	0.216
17	17	0.913
18	18	0.419
19	19	0.496
2	2	0.133
20	20	0.106
21	21	0.44
22	22	0.499
23	23	0.207
24	24	0.0491
25	25	0.0622
26	26	0.152
27	27	0.92
28	28	0.561
29	29	0.00351
3	3	0.446
30	30	0.0761
31	31	0.794
32	32	0.189
33	33	0.3
34	34	0.519
35	35	0.231
36	36	0.0404
37	37	0.723
38	38	0.446
39	39	0.247
4	4	0.0381
40	40	0.114
41	41	0.492
42	42	0.263
43	43	0.455
44	44	0.213
45	45	0.261
46	46	0.454
47	47	0.128
48	48	0.273
49	49	0.159
5	5	0.637
50	50	0.741
51	51	0.697
52	52	0.186
53	53	0.777
54	54	0.283
55	55	0.184
56	56	0.941
57	57	0.798
58	58	0.07
59	59	0.657
6	6	0.988
60	60	0.933
61	61	0.229
62	62	0.131
63	63	0.59
64	64	0.773
65	65	0.691
66	66	4.18633e-5
67	67	0.491
68	68	0.229
69	69	0.83
7	7	0.128
70	70	0.789
71	71	0.0308
72	72	0.186
73	73	0.56
74	74	0.961
75	75	0.0185
76	76	0.153
77	77	0.0221
78	78	0.162
79	79	0.689
8	8	0.556
80	80	0.257
81	81	0.264
82	82	0.365
83	83	0.096
84	84	0.696
85	85	0.308
86	86	0.368
87	87	0.088
88	88	0.697
89	89	0.354
9	9	0.425
90	90	0.309
91	91	0.505
92	92	0.711
93	93	0.419
94	94	0.928
95	95	0.00716
96	96	0.8
97	97	0.179
98	98	0.832
99	99	0.0575

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12807

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000786 plasma cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102992 ARH-77 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000946 (antibody secreting cell)
0000786 (plasma cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101035 (hematopoietic cell line sample)
0100773 (lymphoblastoid cell line sample)
0101522 (B-lymphocyte cell line sample)
0102062 (B-lymphoblastoid cell line sample)
0102992 (ARH-77 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000954 (small pre-B-II cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004916
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000236,CL:0000946,CL:0000817,CL:0000785,CL:0000838,CL:0002031,CL:0000955,CL:0000037,CL:0000566,CL:0000837,CL:0000786,CL:0000826,CL:0000051,CL:0000818,CL:0000980,CL:0000954,CL:0000816
+|accession_numbers=CAGE;DRX007985;DRR008857;DRZ000282;DRZ001667;DRZ011632;DRZ013017
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000151,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000946,CL:0000786
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101035,FF:0100773,FF:0101522,FF:0102062,FF:0102992
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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r8:81397846..81397860,+!p3@ZBTB10!0.22!1.04!ZBTB10;;chr14:74206359..74206374,-!p8@C14orf43!0.22!1.04!C14orf43;;chr2:25565377..25565389,-!p9@DNMT3A!0.22!0.81!DNMT3A;;chr13:20357063..20357105,-!p1@PSPC1!0.21!47.48!PSPC1;;chr11:85376121..85376181,-!p1@CREBZF!0.21!44.13!CREBZF;;chr19:6424783..6424802,-!p2@KHSRP!0.21!29.27!KHSRP;;chr1:235491462..235491510,-!p1@ARID4B!0.21!26.50!ARID4B;;chr1:247495140..247495177,-!p1@ZNF496!0.21!15.10!ZNF496;;chr6:41514305..41514359,+!p2@FOXP4!0.21!11.52!FOXP4;;chr12:2986206..2986258,-!p2@FOXM1!0.21!8.18!FOXM1;;chr1:8763440..8763460,-!p2@RERE!0.21!6.68!RERE;;chr7:26191809..26191890,+!p1@NFE2L3!0.21!6.57!NFE2L3;;chr12:80084333..80084380,-!p4@PAWR!0.21!6.34!PAWR;;chr15:77713025..77713081,+!p2@HMG20A!0.21!5.65!HMG20A;;chr12:72058130..72058189,+!p2@THAP2!0.21!5.53!THAP2;;chr19:12595586..12595637,-!p2@ZNF709!0.21!5.19!ZNF709;;chr1:42800848..42800859,-!p2@FOXJ3!0.21!3.34!FOXJ3;;chr2:178128250..178128293,-!p6@NFE2L2!0.21!2.88!NFE2L2;;chr6:151712800..151712835,-!p2@ZBTB2!0.21!2.54!ZBTB2;;chr2:174830043..174830071,-!p6@SP3!0.21!2.42!SP3;;chr8:42698494..42698507,-!p3@THAP1!0.21!1.96!THAP1;;chr9:102584159..102584174,+!p2@NR4A3!0.21!1.84!NR4A3;;chr7:137564014..137564042,-!p8@CREB3L2!0.21!1.73!CREB3L2;;chr8:124286670..124286702,-!p3@ZHX1!0.21!1.73!ZHX1;;chr19:12444440..12444455,-!p1@ZNF563!0.21!1.73!ZNF563;;chr15:31619871..31619884,+!p8@KLF13!0.21!1.61!KLF13;;chr18:42260059..42260132,+!p1@SETBP1!0.21!1.61!SETBP1;;chr19:49140572..49140594,-!p2@DBP!0.21!1.50!DBP;;chr3:107318157..107318172,+!p6@BBX!0.21!1.27!BBX;;chr4:146436110..146436135,+!p6@SMAD1!0.21!1.27!SMAD1;;chr4:106156933..106156947,+!p3@TET2!0.21!1.15!TET2;;chr1:6640110..6640130,+!p2@ZBTB48!0.21!1.15!ZBTB48;;chr1:8926369..8926385,-!p12@ENO1!0.21!1.15!ENO1;;chr11:6947647..6947698,+!p2@ZNF215!0.21!1.15!ZNF215;;chr6:45390343..45390388,+!p10@RUNX2!0.21!1.15!RUNX2;;chr18:14132422..14132440,-!p1@ZNF519!0.21!1.15!ZNF519;;chr11:65687222..65687240,+!p7@DRAP1!0.21!1.04!DRAP1;;chr2:61108808..61108821,+!p3@REL!0.21!1.04!REL;;chr2:148778934..148778965,+!p6@MBD5!0.21!0.92!MBD5;;chr3:141121369..141121392,+!p14@ZBTB38!0.21!0.92!ZBTB38;;chr12:27485889..27485900,+!p4@ARNTL2!0.21!0.92!ARNTL2;;chr8:128752734..128752763,+!p13@MYC!0.21!0.92!MYC;;chr2:187350973..187351072,+!p1@ZC3H15!0.20!125.61!ZC3H15;;chr2:231280908..231280945,+!p1@SP100!0.20!55.20!SP100;;chr13:115079949..115080022,+!p1@CHAMP1!0.20!39.41!CHAMP1;;chr4:144434584..144434709,+!p2@SMARCA5!0.20!33.19!SMARCA5;;chr1:59165724..59165751,-!p1@MYSM1!0.20!32.50!MYSM1;;chr12:104531945..104531996,-!p1@NFYB!0.20!19.47!NFYB;;chr21:30671235..30671253,+!p1@BACH1!0.20!17.86!BACH1;;chr14:23755297..23755350,-!p1@HOMEZ!0.20!16.36!HOMEZ;;chr1:151319710..151319774,-!p1@RFX5!0.20!13.60!RFX5;;chr3:129158715..129158766,-!p2@MBD4!0.20!13.25!MBD4;;chr2:70142189..70142223,+!p2@MXD1!0.20!9.56!MXD1;;chr4:140005443..140005527,-!p2@ELF2!0.20!7.84!ELF2;;chr18:45456930..45456967,-!p2@SMAD2!0.20!7.26!SMAD2;;chr19:56652643..56652683,+!p1@ZNF444!0.20!7.03!ZNF444;;chrX:129244840..129244881,-!p2@ELF4!0.20!4.72!ELF4;;chr12:104531854..104531893,-!p2@NFYB!0.20!4.49!NFYB;;chr18:74534479..74534551,+!p1@ZNF236!0.20!3.57!ZNF236;;chr1:78444714..78444725,-!p3@FUBP1!0.20!3.11!FUBP1;;chr17:41322332..41322351,-!p4@BRCA1!0.20!2.65!BRCA1;;chr17:36861675..36861697,+!p3@MLLT6!0.20!2.54!MLLT6;;chr2:113993052..113993097,-!p2@PAX8!0.20!2.42!PAX8;;chr12:53853054..53853092,+!p6@PCBP2!0.20!1.96!PCBP2;;chr12:6798692..6798723,-!p5@ZNF384!0.20!1.50!ZNF384;;chr4:87928166..87928186,+!p12@AFF1!0.20!1.38!AFF1;;chr6:27356527..27356557,+!p2@ZNF391!0.20!1.15!ZNF391;;chr10:98592751..98592765,+!p5@LCOR!0.20!1.04!LCOR;;chr6:126240356..126240379,+!p7@NCOA7!0.20!0.92!NCOA7;;chr17:46622205..46622218,-!p3@HOXB2!0.20!0.81!HOXB2;;chr2:25565344..25565369,-!p7@DNMT3A!0.20!0.81!DNMT3A;;chr2:100721310..100721325,-!p7@AFF3!0.20!0.58!AFF3;;chr2:157186630..157186686,-!p6@NR4A2!0.20!0.58!NR4A2;;chr2:214016467..214016482,-!p14@IKZF2!0.20!0.58!IKZF2;;chr3:141087562..141087594,+!p12@ZBTB38!0.20!0.58!ZBTB38;;chr3:141106458..141106491,+!p20@ZBTB38!0.20!0.58!ZBTB38;;chr3:141121820..141121838,+!p9@ZBTB38!0.20!0.58!ZBTB38;;chr4:106156800..106156812,+!p17@TET2!0.20!0.58!TET2;;chr14:99737850..99737852,-!p3@BCL11B!0.20!0.58!BCL11B;;chr15:76629064..76629073,+!p3@ISL2!0.20!0.58!ISL2;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.20!0.58!ZNF469;;chr17:36871943..36871947,+!p8@MLLT6!0.20!0.58!MLLT6;;chr17:41277334..41277348,-!p6@BRCA1!0.20!0.58!BRCA1;;chr19:33865166..33865182,+!p7@CEBPG!0.20!0.58!CEBPG;;chr10:64575812..64575824,-!p4@EGR2!0.20!0.58!EGR2;;chr10:8097591..8097627,+!p7@GATA3!0.20!0.58!GATA3;;chr11:128392258..128392264,-!p7@ETS1!0.20!0.58!ETS1;;chr11:47399947..47399961,-!p3@SPI1!0.20!0.58!SPI1;;chr12:2968536..2968539,-!p3@FOXM1!0.20!0.58!FOXM1;;chr12:57914700..57914737,+!p7@MBD6!0.20!0.58!MBD6;;chr12:66358080..66358094,+!p15@HMGA2!0.20!0.58!HMGA2;;chr13:41556678..41556692,-!p15@ELF1!0.20!0.58!ELF1;;chr14:45722418..45722426,-!p6@MIS18BP1!0.20!0.58!MIS18BP1;;chr14:69263043.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+|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000954
 |fonse_cell_line=FF:0101035,FF:0101522
 |fonse_cell_line_closure=FF:0101035,FF:0101522
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/plasma%2520cell%2520leukemia%2520cell%2520line%253aARH-77.CNhs12807.10840-111E3.hg19.ctss.bed.gz
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 |name=plasma cell leukemia cell line:ARH-77
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
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 |rna_box=111
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@@ Line 54: / Line 75: @@
 |rna_rin=
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 |sample_cell_catalog=CRL1621
 |sample_cell_line=ARH-77
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=POU2F1..3:2.86225114448;PAX6:2.12931736635;POU5F1:2.04423357147;HOXA9_MEIS1:1.87547667542;IRF1,2:1.54648651776;DMAP1_NCOR{1,2}_SMARC:1.53070719488;NFY{A,B,C}:1.52100213269;IRF7:1.45505876856;CDX1,2,4:1.44033814354;E2F1..5:1.33667351923;PDX1:1.24089425439;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23078233898;MYB:1.20890857379;NFKB1_REL_RELA:1.14663492546;MYOD1:1.13706961699;HIF1A:1.08286765313;ELK1,4_GABP{A,B1}:1.06757890918;RORA:1.00757208022;ELF1,2,4:0.985128015364;RUNX1..3:0.982464847837;FOXA2:0.975616382536;PBX1:0.952814517455;NKX2-1,4:0.887960121606;PAX8:0.865202601532;ATF4:0.863884098313;NKX6-1,2:0.82866793376;BREu{core}:0.725241684991;RBPJ:0.71509989508;SPI1:0.701162795952;ZNF143:0.700116681668;PAX3,7:0.699220110373;ZBTB16:0.693504157569;YY1:0.650510379519;LMO2:0.642222021172;OCT4_SOX2{dimer}:0.635008405951;NRF1:0.609914356248;CUX2:0.605971994686;bHLH_family:0.604289134814;TGIF1:0.597306775314;POU1F1:0.543741050259;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.500708767675;EVI1:0.477001627604;SPIB:0.41453830225;GATA6:0.405764481845;AIRE:0.403957164732;NFIX:0.39959880829;FOXP3:0.377924093021;IKZF2:0.374046140237;ZEB1:0.334453078523;ATF5_CREB3:0.332787051086;NR5A1,2:0.273778270033;AHR_ARNT_ARNT2:0.257566821602;TLX2:0.234749837988;ETS1,2:0.230903264124;SOX{8,9,10}:0.2208785132;RFX2..5_RFXANK_RFXAP:0.194534053075;ZNF148:0.17870722861;HES1:0.152379841299;CREB1:0.145842703009;HBP1_HMGB_SSRP1_UBTF:0.144698039365;POU3F1..4:0.129370940878;PRRX1,2:0.127678084322;GFI1:0.117529433838;SNAI1..3:0.116209855445;PAX2:0.077449280595;PPARG:0.0668604327589;FOXN1:0.0624922712865;CDC5L:0.0220911049539;NANOG{mouse}:0.011454890754;SOX5:0.00469431050001;NKX2-2,8:0.00352742260944;FOX{F1,F2,J1}:0.00191253612485;MEF2{A,B,C,D}:-0.00518922230694;VSX1,2:-0.00936976944096;DBP:-0.0356229741339;LEF1_TCF7_TCF7L1,2:-0.0508880866071;FOXP1:-0.112851156403;ARID5B:-0.143939228513;HOX{A6,A7,B6,B7}:-0.154067222281;FOSL2:-0.167668901774;STAT5{A,B}:-0.169868946094;TBP:-0.182126823804;HSF1,2:-0.183608880192;ZNF384:-0.186396364863;RXR{A,B,G}:-0.191262891749;CRX:-0.201772961277;PAX4:-0.202628749425;CEBPA,B_DDIT3:-0.208771036482;FOXQ1:-0.210691636723;ESRRA:-0.22554460113;PITX1..3:-0.228170253383;BPTF:-0.233104491092;HNF4A_NR2F1,2:-0.235300695485;SMAD1..7,9:-0.24381005928;SOX17:-0.244203528988;NFE2:-0.255778831115;ESR1:-0.278469086453;POU6F1:-0.281878589674;NFATC1..3:-0.290083410213;EBF1:-0.297597197168;TFDP1:-0.315285090186;HNF1A:-0.329030898696;ATF6:-0.330826709697;SREBF1,2:-0.349656095974;HMGA1,2:-0.357473979254;JUN:-0.380182894655;UFEwm:-0.391858304056;ATF2:-0.392008636577;RXRA_VDR{dimer}:-0.396932994154;ONECUT1,2:-0.404657275293;AR:-0.409426149481;TEF:-0.4124461808;FOXO1,3,4:-0.42406523614;HOX{A5,B5}:-0.43460321116;ZFP161:-0.437358958266;TFAP4:-0.447591437406;TOPORS:-0.460973917818;NR6A1:-0.473789584312;MYFfamily:-0.511487174673;PRDM1:-0.511689869509;GCM1,2:-0.516101880096;HAND1,2:-0.52482444075;SPZ1:-0.536258809966;FOS_FOS{B,L1}_JUN{B,D}:-0.554447201904;STAT2,4,6:-0.55689671594;RFX1:-0.57490529002;GFI1B:-0.581708192848;BACH2:-0.588961059788;NHLH1,2:-0.600154489759;NFIL3:-0.612051060487;HOX{A4,D4}:-0.628802879124;MAFB:-0.638835842802;NKX3-2:-0.650900704277;TAL1_TCF{3,4,12}:-0.668567373859;ALX4:-0.674085030613;STAT1,3:-0.716069728703;TP53:-0.723095308116;EGR1..3:-0.730558751139;EN1,2:-0.738798699961;SOX2:-0.776774916017;FOX{D1,D2}:-0.786161896983;PATZ1:-0.789177195788;RREB1:-0.814574082709;GLI1..3:-0.827130822024;REST:-0.837437917178;MTE{core}:-0.838872882001;HLF:-0.86602632347;NKX3-1:-0.873975242897;PAX5:-0.874320546956;SRF:-0.898388648169;ADNP_IRX_SIX_ZHX:-0.953313242029;GATA4:-0.961239901754;T:-1.01685536879;HIC1:-1.02810191911;MED-1{core}:-1.02812221057;ZNF238:-1.02902639847;NANOG:-1.03061420954;NFE2L2:-1.03753710539;MTF1:-1.06051923416;FOXL1:-1.08945693962;GTF2A1,2:-1.12155946682;ALX1:-1.12963105082;PAX1,9:-1.12993654887;ZIC1..3:-1.13775479452;IKZF1:-1.13783370407;LHX3,4:-1.15625724399;GZF1:-1.16746990872;MYBL2:-1.17598190064;XBP1:-1.18989665209;EP300:-1.20891386243;MZF1:-1.2177062385;SP1:-1.23420438168;TBX4,5:-1.2559353353;FOXD3:-1.26786782295;HMX1:-1.29323806928;NR1H4:-1.30978970559;GTF2I:-1.31759260776;ZBTB6:-1.33535716242;NKX2-3_NKX2-5:-1.34639119422;ZNF423:-1.34892427995;NR3C1:-1.36267289887;TFAP2B:-1.37705689226;KLF4:-1.40461022524;FOXM1:-1.42554028359;NFE2L1:-1.44427150881;MAZ:-1.44891837647;XCPE1{core}:-1.48557028897;TFAP2{A,C}:-1.54434990668;TFCP2:-1.61323651831;TEAD1:-1.61868089366;TLX1..3_NFIC{dimer}:-1.70308564928;FOX{I1,J2}:-1.73202205738
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10840-111E3;search_select_hide=table117:FF:10840-111E3
 }}

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FF:10840-111E3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:08, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0