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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005228
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005228
|accession_numbers=CAGE;DRX008416;DRR009288;DRZ000713;DRZ002098;DRZ012063;DRZ013448
|accession_numbers_RNASeq=sRNA-Seq;DRX037121;DRR041487;DRZ007129
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002334,CL:0002582
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002582
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000143
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.94!96.91!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.62!40.98!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.61!65.95!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.72!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.44!71.20!OSR1;;chr1:170632477..170632506,+!p6@PRRX1!1.44!26.86!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.77!HOXC5;;chr12:66218255..66218304,+!p3@HMGA2!1.34!54.86!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.00!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!1.33!20.45!RFX8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.55!ZBED1;;chr1:170632723..170632739,+!p8@PRRX1!1.28!18.23!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.66!HOXC8;;chr11:65686802..65686818,+!p6@DRAP1!1.25!28.83!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.20!47.06!TWIST2;;chr6:1312325..1312340,+!p1@FOXQ1!1.20!24.15!FOXQ1;;chr1:170632959..170632987,+!p4@PRRX1!1.19!15.85!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.16!402.75!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!1.16!41.15!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.13!12.57!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.13!12.57!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.11!33.02!TWIST1;;chr1:170632439..170632465,+!p11@PRRX1!1.11!11.99!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.09!51.99!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.61!FOXC2;;chr4:174450089..174450153,-!p2@HAND2!1.06!10.43!HAND2;;chr12:66218212..66218244,+!p5@HMGA2!1.05!14.95!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.05!10.35!HOXC9;;chr16:86544113..86544145,+!p1@FOXF1!1.04!12.57!FOXF1;;chr12:66218183..66218209,+!p4@HMGA2!1.03!18.81!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.92!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.21!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.02!14.21!NFIX;;chr1:170633058..170633084,+!p5@PRRX1!1.01!9.12!PRRX1;;chr4:26322267..26322334,+!p3@RBPJ!1.00!21.93!RBPJ;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.02!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.98!8.62!RFX8;;chr9:132427883..132427951,+!p2@PRRX2!0.98!8.54!PRRX2;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.38!HOXD8;;chr4:111558135..111558198,-!p2@PITX2!0.97!8.29!PITX2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.76!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.51!DRAP1;;chr7:14029283..14029311,-!p1@ETV1!0.95!43.45!ETV1;;chr5:133450365..133450444,+!p1@TCF7!0.95!37.45!TCF7;;chr11:65687362..65687436,+!p3@DRAP1!0.94!36.55!DRAP1;;chr17:46622070..46622109,-!p1@HOXB2!0.94!17.74!HOXB2;;chr12:54422217..54422239,+!p3@HOXC6!0.94!7.64!HOXC6;;chr1:170632137..170632172,+!p10@PRRX1!0.93!7.56!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.92!7.39!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.23!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.40!CREB3L1;;chr17:46682321..46682362,-!p1@HOXB6!0.90!6.98!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.85!IFI16;;chr1:170632683..170632696,+!p12@PRRX1!0.89!6.82!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.82!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.05!CREB3L1;;chr1:170632647..170632659,+!p17@PRRX1!0.88!6.65!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.12!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.87!7.56!HOXB6;;chr1:158979792..158979814,+!p2@IFI16!0.86!63.48!IFI16;;chr12:66218836..66218888,+!p1@HMGA2!0.86!62.50!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.16!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.08!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.84!40.57!SNAI2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!6.00!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!0.83!15.19!EBF1;;chr17:46688334..46688385,-!p1@HOXB7!0.83!8.46!HOXB7;;chr9:1050331..1050363,+!p1@DMRT2!0.83!5.75!DMRT2;;chr7:19157043..19157088,-!p2@TWIST1!0.82!15.03!TWIST1;;chr7:14028488..14028516,-!p2@ETV1!0.82!6.24!ETV1;;chr11:65687243..65687276,+!p8@DRAP1!0.81!7.64!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.41!PPARG;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.42!HOXB8;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.55!TBX3;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.70!ARNTL2;;chr12:54402790..54402805,+!p2@HOXC8!0.79!5.17!HOXC8;;chr11:65667884..65667895,-!p2@FOSL1!0.78!20.94!FOSL1;;chr3:141121847..141121868,+!p5@ZBTB38!0.78!7.97!ZBTB38;;chr12:54410948..54410992,+!p3@HOXC5!0.78!5.01!HOXC5;;chr12:53614115..53614154,-!p1@RARG!0.77!28.66!RARG;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.75!BNC1;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.73!FOXD1;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.32!TOX2;;chr15:96874145..96874166,+!p7@NR2F2!0.76!9.69!NR2F2;;chr15:96875041..96875052,+!p17@NR2F2!0.76!7.15!NR2F2;;chr7:44143925..44143970,+!p1@AEBP1!0.75!115.39!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!0.75!5.34!TCF4;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.68!HOXA7;;chr1:44513995..44514031,+!p1@KLF17!0.75!4.60!KLF17;;chr17:46622114..46622138,-!p4@HOXB2!0.74!7.23!HOXB2;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.43!ZNF385D;;chr2:74741569..74741620,+!p1@TLX2!0.73!4.35!TLX2;;chr1:170633245..170633256,+!p14@PRRX1!0.73!4.35!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.72!14.70!AHRR;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.08!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.72!5.91!TBX2;;chr12:54447637..54447659,+!p4@HOXC4!0.72!4.27!HOXC4;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.19!TCF12;;chr2:119604456..119604501,-!p2@EN1!0.72!4.19!EN1;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.83!FOXF2;;chr12:54394309..54394336,+!p2@HOXC9!0.70!4.02!HOXC9;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.15!SNAI2;;chr11:65686776..65686787,+!p9@DRAP1!0.69!4.76!DRAP1;;chr10:131762385..131762398,-!p4@EBF3!0.69!3.94!EBF3;;chr12:54380036..54380091,+!p4@HOXC10!0.69!3.94!HOXC10;;chr12:85673977..85674015,+!p1@ALX1!0.69!3.94!ALX1;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.86!HOXC10;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.72!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.68!9.94!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.68!4.27!ZNF385D;;chr14:73360799..73360817,-!p1@DPF3!0.67!14.45!DPF3;;chr15:96874244..96874259,+!p5@NR2F2!0.67!9.77!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.67!SATB2;;chr12:115122318..115122331,-!p2@TBX3!0.67!3.70!TBX3;;chr15:96874012..96874042,+!p2@NR2F2!0.66!37.12!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.50!NR2F2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.60!ETV1;;chr3:157823517..157823562,-!p1@SHOX2!0.66!3.86!SHOX2;;chr4:111544219..111544240,-!p1@PITX2!0.66!3.61!PITX2;;chr18:52969844..52969895,-!p27@TCF4!0.66!3.61!TCF4;;chr10:119303078..119303169,+!p2@EMX2!0.66!3.53!EMX2;;chr11:65667846..65667868,-!p1@FOSL1!0.65!106.93!FOSL1;;chr15:96869255..96869291,+!p6@NR2F2!0.65!6.90!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.65!6.82!ZFP106;;chr15:67430351..67430366,+!p10@SMAD3!0.65!3.45!SMAD3;;chr8:22550982..22550999,-!p1@EGR3!0.64!10.84!EGR3;;chr1:158979851..158979865,+!p5@IFI16!0.64!8.29!IFI16;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.00!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!0.64!4.19!POU2F3;;chr12:66218904..66218913,+!p11@HMGA2!0.64!3.37!HMGA2;;chr3:21792631..21792665,-!p3@ZNF385D!0.64!3.37!ZNF385D;;chr7:27205106..27205134,-!p2@HOXA9!0.64!3.37!HOXA9;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.43!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.65!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.62!5.91!TBX2;;chr19:31840130..31840160,-!p2@TSHZ3!0.62!5.26!TSHZ3;;chr12:54447599..54447630,+!p3@HOXC4!0.62!4.02!HOXC4;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.37!EGR1;;chr18:52989031..52989079,-!p2@TCF4!0.61!8.13!TCF4;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.17!HMGA2;;chr1:170632867..170632878,+!p21@PRRX1!0.61!3.12!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!0.61!3.04!NPAS1;;chr1:170633225..170633230,+!p25@PRRX1!0.61!3.04!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.61!3.04!TBX1;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.76!RBPJ;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.76!HMGA2;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.53!HOXB2;;chr2:102091478..102091490,-!p3@RFX8!0.60!2.96!RFX8;;chr12:115121802..115121814,-!p5@TBX3!0.60!2.96!TBX3;;chr1:170633100..170633112,+!p19@PRRX1!0.60!2.96!PRRX1;;chr21:36260295..36260310,-!p3@RUNX1!0.59!5.17!RUNX1;;chr1:170632310..170632321,+!p15@PRRX1!0.59!2.87!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!0.59!2.87!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.59!2.87!RUNX1T1;;chr12:54402729..54402743,+!p3@HOXC8!0.59!2.87!HOXC8;;chr4:26322419..26322479,+!p2@RBPJ!0.58!41.72!RBPJ;;chr4:4861385..4861398,+!p1@MSX1!0.58!9.69!MSX1;;chr12:66218152..66218174,+!p10@HMGA2!0.58!3.04!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!0.58!2.79!TBX3;;chr17:46621146..46621180,-!p10@HOXB2!0.58!2.79!HOXB2;;chr6:34204973..34204990,+!p4@HMGA1!0.57!44.60!HMGA1;;chr1:59249732..59249749,-!p2@JUN!0.57!41.06!JUN;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.03!TCF19;;chr10:131762410..131762436,-!p2@EBF3!0.57!2.71!EBF3;;chr17:46671108..46671147,-!p1@HOXB5!0.57!2.71!HOXB5;;chr2:19558327..19558334,-!p2@OSR1!0.57!2.71!OSR1;;chr3:71114066..71114114,-!p1@FOXP1!0.56!68.00!FOXP1;;chr15:96873861..96873872,+!p9@NR2F2!0.56!6.24!NR2F2;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.63!HOXA3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.56!2.63!RUNX1T1;;chr1:170632907..170632916,+!p22@PRRX1!0.56!2.63!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.22!ZFHX4;;chr14:61116183..61116208,-!p1@SIX1!0.55!11.74!SIX1;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.32!SATB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!5.01!CREB3L2;;chr21:36260343..36260402,-!p6@RUNX1!0.55!4.52!RUNX1;;chr7:15726243..15726293,-!p2@MEOX2!0.55!2.55!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!0.55!2.55!MEOX2;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr4:26323764..26323821,+!p15@RBPJ!0.55!2.55!RBPJ;;chr12:54426831..54426836,+!p10@HOXC5!0.55!2.55!HOXC5;;chr14:62162258..62162269,+!p2@HIF1A!0.54!30.06!HIF1A;;chr8:106330656..106330684,+!p1@ZFPM2!0.54!7.72!ZFPM2;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr17:46675586..46675600,-!p6@HOXB6!0.54!2.46!HOXB6;;chr17:59477403..59477414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|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.94!96.91!PRRX1;;chr8:25902876..25902936,-!p1@EBF2!1.62!40.98!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.61!65.95!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.72!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.44!71.20!OSR1;;chr1:170632477..170632506,+!p6@PRRX1!1.44!26.86!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.77!HOXC5;;chr12:66218255..66218304,+!p3@HMGA2!1.34!54.86!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.00!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!1.33!20.45!RFX8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.55!ZBED1;;chr1:170632723..170632739,+!p8@PRRX1!1.28!18.23!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.66!HOXC8;;chr11:65686802..65686818,+!p6@DRAP1!1.25!28.83!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.20!47.06!TWIST2;;chr6:1312325..1312340,+!p1@FOXQ1!1.20!24.15!FOXQ1;;chr1:170632959..170632987,+!p4@PRRX1!1.19!15.85!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.16!402.75!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!1.16!41.15!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.13!12.57!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.13!12.57!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.11!33.02!TWIST1;;chr1:170632439..170632465,+!p11@PRRX1!1.11!11.99!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.09!51.99!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.07!26.61!FOXC2;;chr4:174450089..174450153,-!p2@HAND2!1.06!10.43!HAND2;;chr12:66218212..66218244,+!p5@HMGA2!1.05!14.95!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.05!10.35!HOXC9;;chr16:86544113..86544145,+!p1@FOXF1!1.04!12.57!FOXF1;;chr12:66218183..66218209,+!p4@HMGA2!1.03!18.81!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.92!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.21!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.02!14.21!NFIX;;chr1:170633058..170633084,+!p5@PRRX1!1.01!9.12!PRRX1;;chr4:26322267..26322334,+!p3@RBPJ!1.00!21.93!RBPJ;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.02!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.98!8.62!RFX8;;chr9:132427883..132427951,+!p2@PRRX2!0.98!8.54!PRRX2;;chr2:176994408..176994492,+!p1@HOXD8!0.97!8.38!HOXD8;;chr4:111558135..111558198,-!p2@PITX2!0.97!8.29!PITX2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.76!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.51!DRAP1;;chr7:14029283..14029311,-!p1@ETV1!0.95!43.45!ETV1;;chr5:133450365..133450444,+!p1@TCF7!0.95!37.45!TCF7;;chr11:65687362..65687436,+!p3@DRAP1!0.94!36.55!DRAP1;;chr17:46622070..46622109,-!p1@HOXB2!0.94!17.74!HOXB2;;chr12:54422217..54422239,+!p3@HOXC6!0.94!7.64!HOXC6;;chr1:170632137..170632172,+!p10@PRRX1!0.93!7.56!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.92!7.39!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.23!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.40!CREB3L1;;chr17:46682321..46682362,-!p1@HOXB6!0.90!6.98!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.85!IFI16;;chr1:170632683..170632696,+!p12@PRRX1!0.89!6.82!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.82!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.05!CREB3L1;;chr1:170632647..170632659,+!p17@PRRX1!0.88!6.65!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.12!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.87!7.56!HOXB6;;chr1:158979792..158979814,+!p2@IFI16!0.86!63.48!IFI16;;chr12:66218836..66218888,+!p1@HMGA2!0.86!62.50!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.16!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.08!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.84!40.57!SNAI2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!6.00!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!0.83!15.19!EBF1;;chr17:46688334..46688385,-!p1@HOXB7!0.83!8.46!HOXB7;;chr9:1050331..1050363,+!p1@DMRT2!0.83!5.75!DMRT2;;chr7:19157043..19157088,-!p2@TWIST1!0.82!15.03!TWIST1;;chr7:14028488..14028516,-!p2@ETV1!0.82!6.24!ETV1;;chr11:65687243..65687276,+!p8@DRAP1!0.81!7.64!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.41!PPARG;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.42!HOXB8;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.55!TBX3;;chr12:27485762..27485776,+!p3@ARNTL2!0.79!14.70!ARNTL2;;chr12:54402790..54402805,+!p2@HOXC8!0.79!5.17!HOXC8;;chr11:65667884..65667895,-!p2@FOSL1!0.78!20.94!FOSL1;;chr3:141121847..141121868,+!p5@ZBTB38!0.78!7.97!ZBTB38;;chr12:54410948..54410992,+!p3@HOXC5!0.78!5.01!HOXC5;;chr12:53614115..53614154,-!p1@RARG!0.77!28.66!RARG;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.75!BNC1;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.73!FOXD1;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.32!TOX2;;chr15:96874145..96874166,+!p7@NR2F2!0.76!9.69!NR2F2;;chr15:96875041..96875052,+!p17@NR2F2!0.76!7.15!NR2F2;;chr7:44143925..44143970,+!p1@AEBP1!0.75!115.39!AEBP1;;chr18:53068911..53068935,-!p4@TCF4!0.75!5.34!TCF4;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.68!HOXA7;;chr1:44513995..44514031,+!p1@KLF17!0.75!4.60!KLF17;;chr17:46622114..46622138,-!p4@HOXB2!0.74!7.23!HOXB2;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.43!ZNF385D;;chr2:74741569..74741620,+!p1@TLX2!0.73!4.35!TLX2;;chr1:170633245..170633256,+!p14@PRRX1!0.73!4.35!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.72!14.70!AHRR;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.08!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.72!5.91!TBX2;;chr12:54447637..54447659,+!p4@HOXC4!0.72!4.27!HOXC4;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.19!TCF12;;chr2:119604456..119604501,-!p2@EN1!0.72!4.19!EN1;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.83!FOXF2;;chr12:54394309..54394336,+!p2@HOXC9!0.70!4.02!HOXC9;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.15!SNAI2;;chr11:65686776..65686787,+!p9@DRAP1!0.69!4.76!DRAP1;;chr10:131762385..131762398,-!p4@EBF3!0.69!3.94!EBF3;;chr12:54380036..54380091,+!p4@HOXC10!0.69!3.94!HOXC10;;chr12:85673977..85674015,+!p1@ALX1!0.69!3.94!ALX1;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.86!HOXC10;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.72!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.68!9.94!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.68!4.27!ZNF385D;;chr14:73360799..73360817,-!p1@DPF3!0.67!14.45!DPF3;;chr15:96874244..96874259,+!p5@NR2F2!0.67!9.77!NR2F2;;chr2:200322654..200322707,-!p2@SATB2!0.67!5.67!SATB2;;chr12:115122318..115122331,-!p2@TBX3!0.67!3.70!TBX3;;chr15:96874012..96874042,+!p2@NR2F2!0.66!37.12!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.66!5.50!NR2F2;;chr7:14029312..14029325,-!p4@ETV1!0.66!4.60!ETV1;;chr3:157823517..157823562,-!p1@SHOX2!0.66!3.86!SHOX2;;chr4:111544219..111544240,-!p1@PITX2!0.66!3.61!PITX2;;chr18:52969844..52969895,-!p27@TCF4!0.66!3.61!TCF4;;chr10:119303078..119303169,+!p2@EMX2!0.66!3.53!EMX2;;chr11:65667846..65667868,-!p1@FOSL1!0.65!106.93!FOSL1;;chr15:96869255..96869291,+!p6@NR2F2!0.65!6.90!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.65!6.82!ZFP106;;chr15:67430351..67430366,+!p10@SMAD3!0.65!3.45!SMAD3;;chr8:22550982..22550999,-!p1@EGR3!0.64!10.84!EGR3;;chr1:158979851..158979865,+!p5@IFI16!0.64!8.29!IFI16;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.00!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!0.64!4.19!POU2F3;;chr12:66218904..66218913,+!p11@HMGA2!0.64!3.37!HMGA2;;chr3:21792631..21792665,-!p3@ZNF385D!0.64!3.37!ZNF385D;;chr7:27205106..27205134,-!p2@HOXA9!0.64!3.37!HOXA9;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.43!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.65!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.62!5.91!TBX2;;chr19:31840130..31840160,-!p2@TSHZ3!0.62!5.26!TSHZ3;;chr12:54447599..54447630,+!p3@HOXC4!0.62!4.02!HOXC4;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.37!EGR1;;chr18:52989031..52989079,-!p2@TCF4!0.61!8.13!TCF4;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.17!HMGA2;;chr1:170632867..170632878,+!p21@PRRX1!0.61!3.12!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!0.61!3.04!NPAS1;;chr1:170633225..170633230,+!p25@PRRX1!0.61!3.04!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.61!3.04!TBX1;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.76!RBPJ;;chr12:66218573..66218596,+!p7@HMGA2!0.60!4.76!HMGA2;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.53!HOXB2;;chr2:102091478..102091490,-!p3@RFX8!0.60!2.96!RFX8;;chr12:115121802..115121814,-!p5@TBX3!0.60!2.96!TBX3;;chr1:170633100..170633112,+!p19@PRRX1!0.60!2.96!PRRX1;;chr21:36260295..36260310,-!p3@RUNX1!0.59!5.17!RUNX1;;chr1:170632310..170632321,+!p15@PRRX1!0.59!2.87!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!0.59!2.87!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.59!2.87!RUNX1T1;;chr12:54402729..54402743,+!p3@HOXC8!0.59!2.87!HOXC8;;chr4:26322419..26322479,+!p2@RBPJ!0.58!41.72!RBPJ;;chr4:4861385..4861398,+!p1@MSX1!0.58!9.69!MSX1;;chr12:66218152..66218174,+!p10@HMGA2!0.58!3.04!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!0.58!2.79!TBX3;;chr17:46621146..46621180,-!p10@HOXB2!0.58!2.79!HOXB2;;chr6:34204973..34204990,+!p4@HMGA1!0.57!44.60!HMGA1;;chr1:59249732..59249749,-!p2@JUN!0.57!41.06!JUN;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.03!TCF19;;chr10:131762410..131762436,-!p2@EBF3!0.57!2.71!EBF3;;chr17:46671108..46671147,-!p1@HOXB5!0.57!2.71!HOXB5;;chr2:19558327..19558334,-!p2@OSR1!0.57!2.71!OSR1;;chr3:71114066..71114114,-!p1@FOXP1!0.56!68.00!FOXP1;;chr15:96873861..96873872,+!p9@NR2F2!0.56!6.24!NR2F2;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.63!HOXA3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.56!2.63!RUNX1T1;;chr1:170632907..170632916,+!p22@PRRX1!0.56!2.63!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.22!ZFHX4;;chr14:61116183..61116208,-!p1@SIX1!0.55!11.74!SIX1;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.32!SATB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.55!5.01!CREB3L2;;chr21:36260343..36260402,-!p6@RUNX1!0.55!4.52!RUNX1;;chr7:15726243..15726293,-!p2@MEOX2!0.55!2.55!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!0.55!2.55!MEOX2;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr4:26323764..26323821,+!p15@RBPJ!0.55!2.55!RBPJ;;chr12:54426831..54426836,+!p10@HOXC5!0.55!2.55!HOXC5;;chr14:62162258..62162269,+!p2@HIF1A!0.54!30.06!HIF1A;;chr8:106330656..106330684,+!p1@ZFPM2!0.54!7.72!ZFPM2;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr17:46675586..46675600,-!p6@HOXB6!0.54!2.46!HOXB6;;chr17:59477403..59477414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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002582
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|fonse_cell_line_closure=
Line 35: Line 44:
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520visceral%252c%2520donor1.CNhs11082.11280-116I2.hg38.nobarcode.bam
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|id=FF:11280-116I2
|is_a=EFO:0002091;;FF:0000002;;FF:0000143;;FF:0000210
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|is_obsolete=
|library_id=CNhs11082
|library_id_phase_based=2:CNhs11082
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11280
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.CCGTCC.11280
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11280
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.CCGTCC.11280
|name=Preadipocyte - visceral, donor1
|name=Preadipocyte - visceral, donor1
|namespace=FANTOM5
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Line 42: Line 65:
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA802s-R10a
|rna_catalog_number=CA802s-R10a
Line 56: Line 82:
|rna_tube_id=116I2
|rna_tube_id=116I2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.CCGTCC
|sample_age=56
|sample_age=56
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 77: Line 105:
|sample_tissue=heart
|sample_tissue=heart
|top_motifs=EN1,2:1.56336029654;GZF1:1.47497295092;MYBL2:1.3265417624;HSF1,2:1.27096297508;ZNF238:1.22364802077;ZNF384:1.21215901077;KLF4:1.07806955712;HES1:1.0643839091;HOX{A5,B5}:1.05304123128;GATA4:1.00230585045;TFDP1:0.981584907665;ALX4:0.936167044406;NKX3-1:0.933362408701;HOX{A4,D4}:0.905855798412;GFI1B:0.847331941621;NFATC1..3:0.815357596864;IKZF1:0.791130122813;HBP1_HMGB_SSRP1_UBTF:0.786596759485;TLX1..3_NFIC{dimer}:0.779557539605;PAX8:0.76737474491;PRDM1:0.759948846956;TAL1_TCF{3,4,12}:0.730761738457;NR3C1:0.723980084936;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.704677146485;SPZ1:0.704291816149;GFI1:0.696035788596;HOX{A6,A7,B6,B7}:0.695433358825;SRF:0.690471801705;E2F1..5:0.664084894638;LHX3,4:0.647284079157;TEAD1:0.644641006468;FOX{I1,J2}:0.619801878929;HAND1,2:0.591206601055;NKX2-2,8:0.582869696469;MZF1:0.582506321746;PAX1,9:0.569477889999;TFCP2:0.554913094127;ZIC1..3:0.548864905216;MYB:0.529645869291;NR1H4:0.522715928218;TEF:0.502706042747;UFEwm:0.492540940445;PRRX1,2:0.461371184944;NKX3-2:0.461037921259;CDC5L:0.450761366896;NFE2L2:0.441342226591;ESR1:0.432755060601;YY1:0.432330587159;EVI1:0.415996047666;GTF2I:0.412502961355;NFIX:0.400557786696;NFE2L1:0.380811981291;BACH2:0.380404183573;RXR{A,B,G}:0.368004981332;SOX17:0.366575265662;ELK1,4_GABP{A,B1}:0.360376396615;FOXL1:0.35291737355;FOS_FOS{B,L1}_JUN{B,D}:0.330761179528;GCM1,2:0.315623761891;ZNF143:0.304068375588;TBX4,5:0.253680826072;DMAP1_NCOR{1,2}_SMARC:0.250193262234;IRF1,2:0.247212340482;ADNP_IRX_SIX_ZHX:0.239684259952;NRF1:0.226592752161;EGR1..3:0.222741320369;TBP:0.215977179782;NKX6-1,2:0.206291511125;ATF6:0.192722035717;POU3F1..4:0.184331523619;PDX1:0.180628361709;GLI1..3:0.179320827525;MAFB:0.176079115455;AHR_ARNT_ARNT2:0.164361353708;MYFfamily:0.158835347674;FOXO1,3,4:0.152934507664;NANOG{mouse}:0.142788739937;PBX1:0.138503235441;TP53:0.137735105153;PATZ1:0.133685265812;STAT2,4,6:0.128924786356;STAT1,3:0.122466140991;GTF2A1,2:0.111168767473;ZBTB6:0.107739571762;TOPORS:0.0844019164729;POU5F1:0.0831519615408;MTE{core}:0.0817533877049;FOXD3:0.0790294561693;PAX4:0.0745164064846;EBF1:0.0590862525134;NHLH1,2:0.0562144312678;TFAP2{A,C}:0.0554172444295;SMAD1..7,9:0.0531119439848;HIC1:0.0518135210293;ZNF148:0.0441882088772;LEF1_TCF7_TCF7L1,2:0.0267211648941;JUN:0.0232411916943;HNF1A:0.01872340662;FOSL2:0.015901835771;RREB1:-0.00589585785489;TFAP2B:-0.018741747085;bHLH_family:-0.0189384477946;HLF:-0.023937205267;NKX2-3_NKX2-5:-0.0322384230616;XBP1:-0.0338599216513;TFAP4:-0.0350956017101;ELF1,2,4:-0.0421213913608;IRF7:-0.055285225863;DBP:-0.0557250527776;ZNF423:-0.061978358287;HMGA1,2:-0.0765954577417;NR5A1,2:-0.0883876538856;ZFP161:-0.0889508925561;RUNX1..3:-0.0901823343052;FOXQ1:-0.0902845189401;NFY{A,B,C}:-0.109325581425;PAX5:-0.110163397038;PAX3,7:-0.111766228853;POU6F1:-0.126068279878;RFX1:-0.126136591461;XCPE1{core}:-0.143259742683;ALX1:-0.156288488878;NANOG:-0.164344186664;AIRE:-0.164344708391;SOX{8,9,10}:-0.166131559297;NFE2:-0.17536104732;MAZ:-0.177355716652;AR:-0.18587750795;MTF1:-0.21472089204;HIF1A:-0.228109172663;POU1F1:-0.243855570984;NKX2-1,4:-0.24544342964;MEF2{A,B,C,D}:-0.248955733191;REST:-0.25137437626;CRX:-0.260385221158;HNF4A_NR2F1,2:-0.27494006114;ONECUT1,2:-0.297848566771;NFKB1_REL_RELA:-0.327235500594;SPI1:-0.327967877661;RFX2..5_RFXANK_RFXAP:-0.330016661318;TGIF1:-0.338561817298;CEBPA,B_DDIT3:-0.353119420726;TLX2:-0.372046483251;SOX5:-0.372562291257;NFIL3:-0.385100937223;FOXN1:-0.388065172277;PAX2:-0.398731598782;SPIB:-0.405502815296;ETS1,2:-0.409728221694;NR6A1:-0.412017499285;T:-0.42602887761;EP300:-0.436761041716;CREB1:-0.440398031833;MED-1{core}:-0.446211867677;SP1:-0.454703228604;ARID5B:-0.460365212714;FOXM1:-0.465782664253;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.471910078877;OCT4_SOX2{dimer}:-0.4790859644;ATF5_CREB3:-0.486847672514;POU2F1..3:-0.488717220114;BREu{core}:-0.505674835349;RXRA_VDR{dimer}:-0.506990111579;FOXP1:-0.512189153565;SOX2:-0.515370209049;VSX1,2:-0.525665332421;HOXA9_MEIS1:-0.528053591025;LMO2:-0.529568702698;BPTF:-0.533646636177;STAT5{A,B}:-0.553865173253;ESRRA:-0.557522028881;CUX2:-0.581043681257;GATA6:-0.583001513032;FOXP3:-0.61862297382;ATF2:-0.622725395829;SREBF1,2:-0.63487650238;FOXA2:-0.706325952067;HMX1:-0.707375117856;IKZF2:-0.715724623608;ZBTB16:-0.739649560627;FOX{D1,D2}:-0.751155470028;PITX1..3:-0.751250110094;PPARG:-0.762440684179;SNAI1..3:-0.833571165384;ZEB1:-0.927677883143;ATF4:-0.935403804548;CDX1,2,4:-0.977189388466;RBPJ:-1.0871298835;MYOD1:-1.09882668037;PAX6:-1.10948605579;RORA:-1.23301974775;FOX{F1,F2,J1}:-1.36726326106
|top_motifs=EN1,2:1.56336029654;GZF1:1.47497295092;MYBL2:1.3265417624;HSF1,2:1.27096297508;ZNF238:1.22364802077;ZNF384:1.21215901077;KLF4:1.07806955712;HES1:1.0643839091;HOX{A5,B5}:1.05304123128;GATA4:1.00230585045;TFDP1:0.981584907665;ALX4:0.936167044406;NKX3-1:0.933362408701;HOX{A4,D4}:0.905855798412;GFI1B:0.847331941621;NFATC1..3:0.815357596864;IKZF1:0.791130122813;HBP1_HMGB_SSRP1_UBTF:0.786596759485;TLX1..3_NFIC{dimer}:0.779557539605;PAX8:0.76737474491;PRDM1:0.759948846956;TAL1_TCF{3,4,12}:0.730761738457;NR3C1:0.723980084936;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.704677146485;SPZ1:0.704291816149;GFI1:0.696035788596;HOX{A6,A7,B6,B7}:0.695433358825;SRF:0.690471801705;E2F1..5:0.664084894638;LHX3,4:0.647284079157;TEAD1:0.644641006468;FOX{I1,J2}:0.619801878929;HAND1,2:0.591206601055;NKX2-2,8:0.582869696469;MZF1:0.582506321746;PAX1,9:0.569477889999;TFCP2:0.554913094127;ZIC1..3:0.548864905216;MYB:0.529645869291;NR1H4:0.522715928218;TEF:0.502706042747;UFEwm:0.492540940445;PRRX1,2:0.461371184944;NKX3-2:0.461037921259;CDC5L:0.450761366896;NFE2L2:0.441342226591;ESR1:0.432755060601;YY1:0.432330587159;EVI1:0.415996047666;GTF2I:0.412502961355;NFIX:0.400557786696;NFE2L1:0.380811981291;BACH2:0.380404183573;RXR{A,B,G}:0.368004981332;SOX17:0.366575265662;ELK1,4_GABP{A,B1}:0.360376396615;FOXL1:0.35291737355;FOS_FOS{B,L1}_JUN{B,D}:0.330761179528;GCM1,2:0.315623761891;ZNF143:0.304068375588;TBX4,5:0.253680826072;DMAP1_NCOR{1,2}_SMARC:0.250193262234;IRF1,2:0.247212340482;ADNP_IRX_SIX_ZHX:0.239684259952;NRF1:0.226592752161;EGR1..3:0.222741320369;TBP:0.215977179782;NKX6-1,2:0.206291511125;ATF6:0.192722035717;POU3F1..4:0.184331523619;PDX1:0.180628361709;GLI1..3:0.179320827525;MAFB:0.176079115455;AHR_ARNT_ARNT2:0.164361353708;MYFfamily:0.158835347674;FOXO1,3,4:0.152934507664;NANOG{mouse}:0.142788739937;PBX1:0.138503235441;TP53:0.137735105153;PATZ1:0.133685265812;STAT2,4,6:0.128924786356;STAT1,3:0.122466140991;GTF2A1,2:0.111168767473;ZBTB6:0.107739571762;TOPORS:0.0844019164729;POU5F1:0.0831519615408;MTE{core}:0.0817533877049;FOXD3:0.0790294561693;PAX4:0.0745164064846;EBF1:0.0590862525134;NHLH1,2:0.0562144312678;TFAP2{A,C}:0.0554172444295;SMAD1..7,9:0.0531119439848;HIC1:0.0518135210293;ZNF148:0.0441882088772;LEF1_TCF7_TCF7L1,2:0.0267211648941;JUN:0.0232411916943;HNF1A:0.01872340662;FOSL2:0.015901835771;RREB1:-0.00589585785489;TFAP2B:-0.018741747085;bHLH_family:-0.0189384477946;HLF:-0.023937205267;NKX2-3_NKX2-5:-0.0322384230616;XBP1:-0.0338599216513;TFAP4:-0.0350956017101;ELF1,2,4:-0.0421213913608;IRF7:-0.055285225863;DBP:-0.0557250527776;ZNF423:-0.061978358287;HMGA1,2:-0.0765954577417;NR5A1,2:-0.0883876538856;ZFP161:-0.0889508925561;RUNX1..3:-0.0901823343052;FOXQ1:-0.0902845189401;NFY{A,B,C}:-0.109325581425;PAX5:-0.110163397038;PAX3,7:-0.111766228853;POU6F1:-0.126068279878;RFX1:-0.126136591461;XCPE1{core}:-0.143259742683;ALX1:-0.156288488878;NANOG:-0.164344186664;AIRE:-0.164344708391;SOX{8,9,10}:-0.166131559297;NFE2:-0.17536104732;MAZ:-0.177355716652;AR:-0.18587750795;MTF1:-0.21472089204;HIF1A:-0.228109172663;POU1F1:-0.243855570984;NKX2-1,4:-0.24544342964;MEF2{A,B,C,D}:-0.248955733191;REST:-0.25137437626;CRX:-0.260385221158;HNF4A_NR2F1,2:-0.27494006114;ONECUT1,2:-0.297848566771;NFKB1_REL_RELA:-0.327235500594;SPI1:-0.327967877661;RFX2..5_RFXANK_RFXAP:-0.330016661318;TGIF1:-0.338561817298;CEBPA,B_DDIT3:-0.353119420726;TLX2:-0.372046483251;SOX5:-0.372562291257;NFIL3:-0.385100937223;FOXN1:-0.388065172277;PAX2:-0.398731598782;SPIB:-0.405502815296;ETS1,2:-0.409728221694;NR6A1:-0.412017499285;T:-0.42602887761;EP300:-0.436761041716;CREB1:-0.440398031833;MED-1{core}:-0.446211867677;SP1:-0.454703228604;ARID5B:-0.460365212714;FOXM1:-0.465782664253;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.471910078877;OCT4_SOX2{dimer}:-0.4790859644;ATF5_CREB3:-0.486847672514;POU2F1..3:-0.488717220114;BREu{core}:-0.505674835349;RXRA_VDR{dimer}:-0.506990111579;FOXP1:-0.512189153565;SOX2:-0.515370209049;VSX1,2:-0.525665332421;HOXA9_MEIS1:-0.528053591025;LMO2:-0.529568702698;BPTF:-0.533646636177;STAT5{A,B}:-0.553865173253;ESRRA:-0.557522028881;CUX2:-0.581043681257;GATA6:-0.583001513032;FOXP3:-0.61862297382;ATF2:-0.622725395829;SREBF1,2:-0.63487650238;FOXA2:-0.706325952067;HMX1:-0.707375117856;IKZF2:-0.715724623608;ZBTB16:-0.739649560627;FOX{D1,D2}:-0.751155470028;PITX1..3:-0.751250110094;PPARG:-0.762440684179;SNAI1..3:-0.833571165384;ZEB1:-0.927677883143;ATF4:-0.935403804548;CDX1,2,4:-0.977189388466;RBPJ:-1.0871298835;MYOD1:-1.09882668037;PAX6:-1.10948605579;RORA:-1.23301974775;FOX{F1,F2,J1}:-1.36726326106
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11280-116I2;search_select_hide=table117:FF:11280-116I2
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Preadipocyte - visceral, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11082
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage56 years old adult
sexfemale
age56
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2161
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005228
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11082 CAGE DRX008416 DRR009288
Accession ID Hg19

Library idBAMCTSS
CNhs11082 DRZ000713 DRZ002098
Accession ID Hg38

Library idBAMCTSS
CNhs11082 DRZ012063 DRZ013448
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005228
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.CCGTCC sRNA-Seq DRX037121 DRR041487
Accession ID Hg19

Library idBAMCTSS
SRhi10008.CCGTCC DRZ007129


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0368
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.386
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.109
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0957
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.364
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.22
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.309
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0343
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.182
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0343
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.066
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0343
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0436
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00228
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.317
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.149
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.149
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.149
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-5.792532e-5
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.174
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.298
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.197
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.24
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.448
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11082

Jaspar motifP-value
MA0002.20.128
MA0003.10.907
MA0004.10.755
MA0006.10.662
MA0007.10.868
MA0009.10.287
MA0014.10.533
MA0017.10.0787
MA0018.24.43136e-6
MA0019.10.608
MA0024.10.00201
MA0025.10.0154
MA0027.10.86
MA0028.10.215
MA0029.10.398
MA0030.10.0455
MA0031.10.0233
MA0035.20.00492
MA0038.10.762
MA0039.20.0671
MA0040.10.947
MA0041.10.966
MA0042.10.771
MA0043.11.02318e-4
MA0046.10.818
MA0047.20.49
MA0048.10.0146
MA0050.10.257
MA0051.10.346
MA0052.10.248
MA0055.10.813
MA0057.10.514
MA0058.10.876
MA0059.10.323
MA0060.10.0395
MA0061.10.162
MA0062.20.0603
MA0065.20.0421
MA0066.10.821
MA0067.10.0208
MA0068.10.871
MA0069.10.172
MA0070.10.447
MA0071.10.712
MA0072.10.244
MA0073.10.981
MA0074.10.704
MA0076.10.367
MA0077.10.302
MA0078.10.333
MA0079.20.719
MA0080.24.81141e-7
MA0081.10.16
MA0083.10.0156
MA0084.10.169
MA0087.10.942
MA0088.10.14
MA0090.10.00109
MA0091.10.145
MA0092.10.258
MA0093.10.971
MA0099.27.91443e-5
MA0100.10.0582
MA0101.10.0424
MA0102.20.163
MA0103.11.01663e-6
MA0104.20.836
MA0105.10.997
MA0106.10.279
MA0107.10.0275
MA0108.20.0434
MA0111.10.616
MA0112.20.817
MA0113.10.797
MA0114.10.0459
MA0115.10.395
MA0116.10.409
MA0117.10.349
MA0119.10.239
MA0122.10.199
MA0124.10.49
MA0125.10.885
MA0131.10.915
MA0135.10.349
MA0136.15.8631e-4
MA0137.20.104
MA0138.20.323
MA0139.10.438
MA0140.10.066
MA0141.10.389
MA0142.10.36
MA0143.10.794
MA0144.10.391
MA0145.10.579
MA0146.10.202
MA0147.10.687
MA0148.10.474
MA0149.10.95
MA0150.10.716
MA0152.13.80978e-4
MA0153.10.352
MA0154.10.204
MA0155.10.284
MA0156.10.0087
MA0157.10.0759
MA0159.10.235
MA0160.10.0588
MA0162.10.583
MA0163.10.0818
MA0164.10.83
MA0258.10.0247
MA0259.10.651



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11082

Novel motifP-value
10.747
100.358
1000.343
1010.956
1020.246
1030.722
1040.776
1050.292
1060.13
1070.397
1080.693
1090.883
110.691
1100.17
1110.628
1120.719
1133.85733e-4
1140.56
1150.618
1160.475
1170.771
1180.0449
1190.32
120.392
1200.736
1210.489
1220.00852
1230.00111
1240.788
1250.662
1260.17
1270.853
1280.697
1290.556
130.689
1300.0528
1310.922
1320.607
1330.216
1340.244
1350.968
1360.434
1370.768
1380.175
1390.0186
140.0565
1400.132
1410.569
1420.868
1430.932
1440.949
1450.803
1460.752
1470.071
1480.493
1490.916
150.259
1500.366
1510.178
1520.421
1530.776
1540.885
1550.00794
1560.382
1570.298
1586.26389e-4
1590.136
160.418
1600.653
1610.108
1620.445
1630.925
1640.951
1650.468
1660.811
1670.136
1680.569
1690.278
170.844
180.86
190.0729
20.313
200.225
210.0248
220.839
230.833
240.559
250.416
260.919
270.613
280.159
290.559
30.621
300.121
310.541
320.0606
330.638
340.992
350.0984
360.0576
370.744
380.401
390.101
40.155
400.00131
410.094
420.692
430.386
440.875
450.274
460.876
470.756
480.856
490.0732
50.541
500.438
510.863
520.616
530.181
540.693
550.223
560.887
570.445
580.283
590.819
60.572
600.303
610.931
620.598
630.894
640.417
650.532
660.445
670.921
680.961
690.402
70.237
700.11
710.545
720.756
730.708
740.108
750.479
760.153
770.325
780.132
790.505
80.722
800.971
810.683
820.158
830.753
840.704
850.132
860.659
870.372
880.844
890.725
90.145
900.308
910.813
920.83
930.3
940.932
950.135
960.858
970.648
980.0936
990.0016



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11082


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002582 (visceral preadipocyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000143 (human visceral preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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