FF:11439-118H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005184 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005184 | ||
|accession_numbers=CAGE;DRX008509;DRR009381;DRZ000806;DRZ002191;DRZ012156;DRZ013541 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037233;DRR041599;DRZ007241 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.99!97.75!SOX17;;chr4:174451370..174451387,-!p1@HAND2!1.73!52.96!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.24!ZBED1;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.03!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.45!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.24!42.82!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.97!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.19!14.37!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.18!414.66!HMGA1;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.87!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.31!PRDM8;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.24!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.34!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.28!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.83!HOXD11;;chr20:30433396..30433414,-!p1@FOXS1!1.11!11.83!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.68!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.06!10.42!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.05!10.14!GATA4;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.42!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.00!41.69!TOX2;;chr19:45260775..45260838,+!p5@BCL3!1.00!11.83!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.98!55.78!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.56!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.42!FOXF1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.58!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.41!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.44!FOXC2;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.35!ENO1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.24!TWIST2;;chr12:54378923..54378966,+!p1@HOXC10!0.92!7.32!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.92!7.32!HOXC10;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.04!MAFK;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.76!HOXC10;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.06!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.04!BNC1;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.44!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.92!HOXA11;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.92!TBX20;;chr1:8938709..8938720,-!p3@ENO1!0.83!299.16!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.92!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.48!DRAP1;;chr4:81105027..81105039,+!p3@PRDM8!0.81!6.48!PRDM8;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.75!TBX2;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.49!TWIST1;;chr2:5832508..5832524,+!p1@SOX11!0.80!5.35!SOX11;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.70!CREB3;;chr4:174451350..174451363,-!p3@HAND2!0.78!5.07!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!0.78!5.07!FOXC2;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.90!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.77!7.32!GATA6;;chr12:124873357..124873401,-!p1@NCOR2!0.76!60.28!NCOR2;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.79!RFX8;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.27!AEBP1;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.52!POU2F2;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!12.96!ARNTL2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.74!4.51!HOXA11;;chr17:59477197..59477212,+!p2@TBX2!0.73!7.89!TBX2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.13!TAX1BP3;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.35!PRDM8;;chr7:150945865..150945896,-!p4@SMARCD3!0.72!4.23!SMARCD3;;chr8:145159846..145159889,+!p6@MAF1!0.71!6.20!MAF1;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.61!AEBP1;;chr6:34204672..34204692,+!p1@HMGA1!0.68!492.69!HMGA1;;chr11:65667846..65667868,-!p1@FOSL1!0.68!115.21!FOSL1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.11!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.76!MLLT11;;chr5:134369905..134369972,-!p1@PITX1!0.68!6.20!PITX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.23!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.66!EBF3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.66!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.77!HHEX;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.76!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.63!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.52!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.10!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.35!HMGA2;;chr19:38720294..38720348,-!p1@DPF1!0.65!4.51!DPF1;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.51!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.23!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.38!RFX8;;chr4:111558135..111558198,-!p2@PITX2!0.64!3.38!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.30!TWIST1;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.83!TBX3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.77!ETV4;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.79!CREB3;;chr1:8926369..8926385,-!p12@ENO1!0.62!4.51!ENO1;;chr6:135502501..135502546,+!p1@MYB!0.62!3.94!MYB;;chr1:8938766..8938774,-!p2@ENO1!0.61!254.09!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.28!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.61!5.07!ETV4;;chr12:54366975..54367001,+!p1@HOXC11!0.61!3.10!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.10!HOXC10;;chr12:66218469..66218477,+!p16@HMGA2!0.61!3.10!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.10!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.60!3999.23!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.60!47.89!CREB3;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.38!SMAD3;;chr19:16435625..16435682,+!p1@KLF2!0.59!113.52!KLF2;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.86!MSX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.73!ZFPM2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr16:29819403..29819442,+!p5@MAZ!0.58!28.17!MAZ;;chr8:72756667..72756736,-!p2@MSC!0.58!4.79!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.82!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.82!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.58!2.82!HOXA9;;chr16:86600458..86600461,+!p3@FOXC2!0.58!2.82!FOXC2;;chr2:176969179..176969226,+!p2@HOXD11!0.58!2.82!HOXD11;;chr9:16705069..16705086,-!p3@BNC2!0.58!2.82!BNC2;;chr20:30433431..30433442,-!p2@FOXS1!0.58!2.82!FOXS1;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.04!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.57!6.20!MSC;;chr12:26277929..26277955,-!p3@BHLHE41!0.57!4.23!BHLHE41;;chr21:36260773..36260804,-!p7@RUNX1!0.57!3.94!RUNX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.41!MXD3;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.68!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.48!C11orf9;;chr7:137686763..137686784,-!p5@CREB3L2!0.56!5.07!CREB3L2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.79!MECOM;;chr6:126070769..126070801,+!p1@HEY2!0.56!3.10!HEY2;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.68!MYBL2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.78!TAX1BP3;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr15:67430351..67430366,+!p10@SMAD3!0.55!2.54!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.55!2.54!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.54!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.55!2.54!EN1;;chr3:25470156..25470227,+!p2@RARB!0.55!2.54!RARB;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.73!MAZ;;chr12:66218183..66218209,+!p4@HMGA2!0.53!5.35!HMGA2;;chr16:1429674..1429703,-!p3@UNKL!0.53!4.51!UNKL;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.94!ENO1;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.33!DRAP1;;chr8:37553292..37553317,+!p1@ZNF703!0.52!70.99!ZNF703;;chr12:27485785..27485816,+!p1@ARNTL2!0.52!20.28!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.86!FOXP1;;chr19:56152332..56152347,+!p4@ZNF580!0.52!6.20!ZNF580;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.38!BHLHE41;;chr20:32274179..32274213,-!p1@E2F1!0.51!18.87!E2F1;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.23!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.51!3.38!HOXB7;;chr20:50179368..50179392,-!p2@NFATC2!0.51!3.10!NFATC2;;chr1:170632137..170632172,+!p10@PRRX1!0.51!2.25!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.51!2.25!PRRX1;;chr16:86601088..86601105,+!p5@FOXC2!0.51!2.25!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.51!2.25!HOXB6;;chr12:54380112..54380126,+!p5@HOXC10!0.51!2.25!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.51!2.25!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.51!2.25!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.25!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.51!2.25!FOXG1;;chr8:55370720..55370733,+!p2@SOX17!0.51!2.25!SOX17;;chr5:321810..321877,+!p1@AHRR!0.50!8.45!AHRR;;chr18:19749517..19749531,+!p3@GATA6!0.50!4.51!GATA6;;chr17:41622834..41622883,-!p6@ETV4!0.50!2.82!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.50!2.54!MSC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.49!24.23!PPP1R13L;;chr20:42295713..42295738,+!p2@MYBL2!0.49!16.06!MYBL2;;chr12:53614115..53614154,-!p1@RARG!0.49!14.65!RARG;;chr15:96874145..96874166,+!p7@NR2F2!0.49!4.79!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.66!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.49!3.10!DRAP1;;chr1:151032833..151032850,+!p3@MLLT11!0.48!5.63!MLLT11;;chr2:121493425..121493474,+!p1@GLI2!0.48!5.35!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.48!3.38!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.82!AEBP1;;chr8:106330696..106330719,+!p2@ZFPM2!0.48!2.82!ZFPM2;;chr19:13213511..13213545,-!p2@LYL1!0.48!2.25!LYL1;;chr2:66662281..66662308,+!p1@MEIS1!0.47!8.73!MEIS1;;chr16:1429627..1429662,-!p2@UNKL!0.47!7.32!UNKL;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.66!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.47!2.82!TBX2;;chr15:80843484..80843499,+!p5@ARNT2!0.47!1.97!ARNT2;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr17:8027418..8027432,-!p1@HES7!0.47!1.97!HES7;;chr18:19749353..19749367,+!p4@GATA6!0.47!1.97!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.47!1.97!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.47!1.97!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.47!1.97!TBX3;;chr12:54366894..54366922,+!p2@HOXC11!0.47!1.97!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.47!1.97!HOXC11;;chr19:49865646..49865718,-!p1@TEAD2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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.99!97.75!SOX17;;chr4:174451370..174451387,-!p1@HAND2!1.73!52.96!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.24!ZBED1;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.03!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.45!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.24!42.82!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.97!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.19!14.37!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.18!414.66!HMGA1;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.87!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.31!PRDM8;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.24!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.34!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.28!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.83!HOXD11;;chr20:30433396..30433414,-!p1@FOXS1!1.11!11.83!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.68!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.06!10.42!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.05!10.14!GATA4;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.42!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.00!41.69!TOX2;;chr19:45260775..45260838,+!p5@BCL3!1.00!11.83!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.98!55.78!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.56!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.42!FOXF1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.58!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.41!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.44!FOXC2;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.35!ENO1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.24!TWIST2;;chr12:54378923..54378966,+!p1@HOXC10!0.92!7.32!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.92!7.32!HOXC10;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.04!MAFK;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.76!HOXC10;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.06!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.04!BNC1;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.44!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.92!HOXA11;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.92!TBX20;;chr1:8938709..8938720,-!p3@ENO1!0.83!299.16!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.92!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.48!DRAP1;;chr4:81105027..81105039,+!p3@PRDM8!0.81!6.48!PRDM8;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.75!TBX2;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.49!TWIST1;;chr2:5832508..5832524,+!p1@SOX11!0.80!5.35!SOX11;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.70!CREB3;;chr4:174451350..174451363,-!p3@HAND2!0.78!5.07!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!0.78!5.07!FOXC2;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.90!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.77!7.32!GATA6;;chr12:124873357..124873401,-!p1@NCOR2!0.76!60.28!NCOR2;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.79!RFX8;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.27!AEBP1;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.52!POU2F2;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!12.96!ARNTL2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.74!4.51!HOXA11;;chr17:59477197..59477212,+!p2@TBX2!0.73!7.89!TBX2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.13!TAX1BP3;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.35!PRDM8;;chr7:150945865..150945896,-!p4@SMARCD3!0.72!4.23!SMARCD3;;chr8:145159846..145159889,+!p6@MAF1!0.71!6.20!MAF1;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.61!AEBP1;;chr6:34204672..34204692,+!p1@HMGA1!0.68!492.69!HMGA1;;chr11:65667846..65667868,-!p1@FOSL1!0.68!115.21!FOSL1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.11!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.76!MLLT11;;chr5:134369905..134369972,-!p1@PITX1!0.68!6.20!PITX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.23!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.66!EBF3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.66!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.77!HHEX;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.76!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.63!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.52!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.10!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.35!HMGA2;;chr19:38720294..38720348,-!p1@DPF1!0.65!4.51!DPF1;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.51!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.23!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.38!RFX8;;chr4:111558135..111558198,-!p2@PITX2!0.64!3.38!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.30!TWIST1;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.83!TBX3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.77!ETV4;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.79!CREB3;;chr1:8926369..8926385,-!p12@ENO1!0.62!4.51!ENO1;;chr6:135502501..135502546,+!p1@MYB!0.62!3.94!MYB;;chr1:8938766..8938774,-!p2@ENO1!0.61!254.09!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.28!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.61!5.07!ETV4;;chr12:54366975..54367001,+!p1@HOXC11!0.61!3.10!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.10!HOXC10;;chr12:66218469..66218477,+!p16@HMGA2!0.61!3.10!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.10!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.60!3999.23!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.60!47.89!CREB3;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.38!SMAD3;;chr19:16435625..16435682,+!p1@KLF2!0.59!113.52!KLF2;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.86!MSX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.73!ZFPM2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr16:29819403..29819442,+!p5@MAZ!0.58!28.17!MAZ;;chr8:72756667..72756736,-!p2@MSC!0.58!4.79!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.82!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.82!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.58!2.82!HOXA9;;chr16:86600458..86600461,+!p3@FOXC2!0.58!2.82!FOXC2;;chr2:176969179..176969226,+!p2@HOXD11!0.58!2.82!HOXD11;;chr9:16705069..16705086,-!p3@BNC2!0.58!2.82!BNC2;;chr20:30433431..30433442,-!p2@FOXS1!0.58!2.82!FOXS1;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.04!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.57!6.20!MSC;;chr12:26277929..26277955,-!p3@BHLHE41!0.57!4.23!BHLHE41;;chr21:36260773..36260804,-!p7@RUNX1!0.57!3.94!RUNX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.41!MXD3;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.68!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.48!C11orf9;;chr7:137686763..137686784,-!p5@CREB3L2!0.56!5.07!CREB3L2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.79!MECOM;;chr6:126070769..126070801,+!p1@HEY2!0.56!3.10!HEY2;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.68!MYBL2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.78!TAX1BP3;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr15:67430351..67430366,+!p10@SMAD3!0.55!2.54!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.55!2.54!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.54!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.55!2.54!EN1;;chr3:25470156..25470227,+!p2@RARB!0.55!2.54!RARB;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.73!MAZ;;chr12:66218183..66218209,+!p4@HMGA2!0.53!5.35!HMGA2;;chr16:1429674..1429703,-!p3@UNKL!0.53!4.51!UNKL;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.94!ENO1;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.33!DRAP1;;chr8:37553292..37553317,+!p1@ZNF703!0.52!70.99!ZNF703;;chr12:27485785..27485816,+!p1@ARNTL2!0.52!20.28!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.86!FOXP1;;chr19:56152332..56152347,+!p4@ZNF580!0.52!6.20!ZNF580;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.38!BHLHE41;;chr20:32274179..32274213,-!p1@E2F1!0.51!18.87!E2F1;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.23!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.51!3.38!HOXB7;;chr20:50179368..50179392,-!p2@NFATC2!0.51!3.10!NFATC2;;chr1:170632137..170632172,+!p10@PRRX1!0.51!2.25!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.51!2.25!PRRX1;;chr16:86601088..86601105,+!p5@FOXC2!0.51!2.25!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.51!2.25!HOXB6;;chr12:54380112..54380126,+!p5@HOXC10!0.51!2.25!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.51!2.25!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.51!2.25!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.25!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.51!2.25!FOXG1;;chr8:55370720..55370733,+!p2@SOX17!0.51!2.25!SOX17;;chr5:321810..321877,+!p1@AHRR!0.50!8.45!AHRR;;chr18:19749517..19749531,+!p3@GATA6!0.50!4.51!GATA6;;chr17:41622834..41622883,-!p6@ETV4!0.50!2.82!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.50!2.54!MSC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.49!24.23!PPP1R13L;;chr20:42295713..42295738,+!p2@MYBL2!0.49!16.06!MYBL2;;chr12:53614115..53614154,-!p1@RARG!0.49!14.65!RARG;;chr15:96874145..96874166,+!p7@NR2F2!0.49!4.79!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.66!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.49!3.10!DRAP1;;chr1:151032833..151032850,+!p3@MLLT11!0.48!5.63!MLLT11;;chr2:121493425..121493474,+!p1@GLI2!0.48!5.35!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.48!3.38!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.82!AEBP1;;chr8:106330696..106330719,+!p2@ZFPM2!0.48!2.82!ZFPM2;;chr19:13213511..13213545,-!p2@LYL1!0.48!2.25!LYL1;;chr2:66662281..66662308,+!p1@MEIS1!0.47!8.73!MEIS1;;chr16:1429627..1429662,-!p2@UNKL!0.47!7.32!UNKL;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.66!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.47!2.82!TBX2;;chr15:80843484..80843499,+!p5@ARNT2!0.47!1.97!ARNT2;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr17:8027418..8027432,-!p1@HES7!0.47!1.97!HES7;;chr18:19749353..19749367,+!p4@GATA6!0.47!1.97!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.47!1.97!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.47!1.97!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.47!1.97!TBX3;;chr12:54366894..54366922,+!p2@HOXC11!0.47!1.97!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.47!1.97!HOXC11;;chr19:49865646..49865718,-!p1@TEAD2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11439-118H8 | |id=FF:11439-118H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000176 | ||
|is_obsolete= | |||
|library_id=CNhs12049 | |||
|library_id_phase_based=2:CNhs12049 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11439 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TAGCTT.11439 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11439 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TAGCTT.11439 | |||
|name=Smooth Muscle Cells - Umbilical Artery, donor3 | |name=Smooth Muscle Cells - Umbilical Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12049,LSID838,release011,COMPLETED | |profile_hcage=CNhs12049,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA252-R10n | |rna_catalog_number=CA252-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H8 | |rna_tube_id=118H8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.TAGCTT | |||
|sample_age=Neonatal | |sample_age=Neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=umbilical artery | |sample_tissue=umbilical artery | ||
|top_motifs=GTF2A1,2:1.64561992467;IKZF1:1.54853436868;EBF1:1.24076523084;HOX{A5,B5}:1.21533084278;ZIC1..3:1.1311753279;XCPE1{core}:1.12360004465;GCM1,2:1.10211299023;SRF:1.07384905309;HAND1,2:1.05212266388;PBX1:1.0349468263;PPARG:0.929897300965;NFE2L1:0.901622588903;TFAP2{A,C}:0.898009798611;GLI1..3:0.890194422488;ZNF148:0.862931831516;RXRA_VDR{dimer}:0.861809432902;ZBTB6:0.836102281339;NR5A1,2:0.794938868375;ZNF238:0.792350786509;TFAP4:0.789114886372;TLX1..3_NFIC{dimer}:0.732347404079;EN1,2:0.7061557282;UFEwm:0.690362912779;HES1:0.683867632067;SOX{8,9,10}:0.676228328674;POU2F1..3:0.671887083195;TP53:0.63559746702;NR3C1:0.614041969958;GZF1:0.605571315175;GFI1B:0.605249909866;HMX1:0.595959092197;TEAD1:0.593915542205;HSF1,2:0.562189406369;RXR{A,B,G}:0.560411788626;TFCP2:0.551945578646;POU3F1..4:0.545071751151;HIF1A:0.54488247427;TBP:0.523928273838;KLF4:0.519482483672;NANOG{mouse}:0.507752045508;TAL1_TCF{3,4,12}:0.456218920066;ELK1,4_GABP{A,B1}:0.41263717997;ALX4:0.407697741958;PAX8:0.402778845189;ESR1:0.38980146021;TFAP2B:0.384023868294;BACH2:0.372523563045;LHX3,4:0.369922579199;MYBL2:0.363983720023;NFATC1..3:0.351595913744;REST:0.34789695048;NFE2L2:0.334668320437;GFI1:0.320945231929;ONECUT1,2:0.312770121692;YY1:0.287543508728;XBP1:0.286501835504;GTF2I:0.260194381035;ATF6:0.257886633432;PAX1,9:0.255544067403;SMAD1..7,9:0.252395740123;FOXL1:0.232481285726;FOSL2:0.230585320067;MAFB:0.224542486937;CDC5L:0.211716958025;HIC1:0.201539525151;LEF1_TCF7_TCF7L1,2:0.20135227797;FOS_FOS{B,L1}_JUN{B,D}:0.183280507364;AR:0.177681258659;SOX17:0.167565328037;ESRRA:0.162617759511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159460218463;ZNF423:0.155902597543;MTE{core}:0.147830203782;CRX:0.131859178669;E2F1..5:0.130416816742;TFDP1:0.125254977215;HNF1A:0.100990373221;bHLH_family:0.096084624464;SPZ1:0.0771993000618;AHR_ARNT_ARNT2:0.0625959211796;VSX1,2:0.0615270319595;ADNP_IRX_SIX_ZHX:0.0586953684746;TOPORS:0.057113571612;HLF:0.0180906355873;NFY{A,B,C}:0.0097979209944;NKX2-2,8:0.00467080083045;SOX2:0.00186957752005;NFE2:-0.0332586098276;NHLH1,2:-0.0333854403668;ZNF143:-0.043850848294;OCT4_SOX2{dimer}:-0.0616174991595;MZF1:-0.0702329298985;GATA6:-0.0716316117647;POU6F1:-0.0778172184451;MEF2{A,B,C,D}:-0.0784266803889;GATA4:-0.0880233686527;HNF4A_NR2F1,2:-0.114981373079;NR6A1:-0.115772877062;CEBPA,B_DDIT3:-0.123689387968;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.125606971816;MYB:-0.131794766232;PAX3,7:-0.143620415348;SP1:-0.148695153055;PRDM1:-0.151907349734;PATZ1:-0.157885842349;FOX{I1,J2}:-0.167700130487;PAX5:-0.168377682677;ZNF384:-0.172100931678;NFKB1_REL_RELA:-0.173768286372;RFX1:-0.201009814892;RUNX1..3:-0.211639595151;POU1F1:-0.213143765774;PAX6:-0.216211330188;DBP:-0.221239590949;EGR1..3:-0.239887469946;MAZ:-0.244996511376;ETS1,2:-0.254087136004;RREB1:-0.255164938609;STAT2,4,6:-0.255287122647;DMAP1_NCOR{1,2}_SMARC:-0.256365330654;LMO2:-0.273507935934;NRF1:-0.315537320329;NKX3-2:-0.318428698845;STAT5{A,B}:-0.332205201265;MYOD1:-0.332566237098;MTF1:-0.335782596043;TBX4,5:-0.353238829002;ELF1,2,4:-0.357013222061;JUN:-0.365886426054;SPIB:-0.379735492371;PITX1..3:-0.390188866494;PRRX1,2:-0.431363951537;EVI1:-0.439490142157;MYFfamily:-0.453963059473;ARID5B:-0.467504640433;SPI1:-0.481756655431;NKX2-3_NKX2-5:-0.500905558388;MED-1{core}:-0.503830877871;HMGA1,2:-0.504600171589;PAX2:-0.506801317286;FOXQ1:-0.519273957228;ZEB1:-0.525506096291;NR1H4:-0.527129977658;POU5F1:-0.534373563531;HOXA9_MEIS1:-0.539928925535;T:-0.543077926205;ZFP161:-0.548600313974;TLX2:-0.57387195748;PAX4:-0.5774137217;NFIX:-0.584414394157;SNAI1..3:-0.597885671249;HOX{A6,A7,B6,B7}:-0.613702995732;TEF:-0.627527393899;HBP1_HMGB_SSRP1_UBTF:-0.633842226822;BREu{core}:-0.633850081178;ALX1:-0.642746922168;NKX2-1,4:-0.646655092433;NKX3-1:-0.661473110345;AIRE:-0.661805438974;HOX{A4,D4}:-0.682192532411;FOX{F1,F2,J1}:-0.708515207199;NANOG:-0.714332366008;CREB1:-0.72099329829;ATF2:-0.738180604676;EP300:-0.740765057228;NFIL3:-0.749496538034;RFX2..5_RFXANK_RFXAP:-0.755349166998;NKX6-1,2:-0.7610250715;ATF5_CREB3:-0.762853019323;CUX2:-0.819156215745;FOXD3:-0.836482371737;RORA:-0.846761676645;IRF1,2:-0.896714180206;TGIF1:-0.908246421069;FOXP1:-0.921997137422;FOXM1:-0.924551840977;ATF4:-0.947827591713;SOX5:-0.971346635885;IRF7:-1.05786427913;STAT1,3:-1.05901112064;FOX{D1,D2}:-1.1200739815;FOXP3:-1.20384326971;IKZF2:-1.23138121073;FOXA2:-1.25415018077;FOXO1,3,4:-1.28726891777;ZBTB16:-1.387005763;CDX1,2,4:-1.43184633053;SREBF1,2:-1.45131629443;BPTF:-1.49060367067;FOXN1:-1.67110552204;PDX1:-1.67605021299;RBPJ:-1.76404489825 | |top_motifs=GTF2A1,2:1.64561992467;IKZF1:1.54853436868;EBF1:1.24076523084;HOX{A5,B5}:1.21533084278;ZIC1..3:1.1311753279;XCPE1{core}:1.12360004465;GCM1,2:1.10211299023;SRF:1.07384905309;HAND1,2:1.05212266388;PBX1:1.0349468263;PPARG:0.929897300965;NFE2L1:0.901622588903;TFAP2{A,C}:0.898009798611;GLI1..3:0.890194422488;ZNF148:0.862931831516;RXRA_VDR{dimer}:0.861809432902;ZBTB6:0.836102281339;NR5A1,2:0.794938868375;ZNF238:0.792350786509;TFAP4:0.789114886372;TLX1..3_NFIC{dimer}:0.732347404079;EN1,2:0.7061557282;UFEwm:0.690362912779;HES1:0.683867632067;SOX{8,9,10}:0.676228328674;POU2F1..3:0.671887083195;TP53:0.63559746702;NR3C1:0.614041969958;GZF1:0.605571315175;GFI1B:0.605249909866;HMX1:0.595959092197;TEAD1:0.593915542205;HSF1,2:0.562189406369;RXR{A,B,G}:0.560411788626;TFCP2:0.551945578646;POU3F1..4:0.545071751151;HIF1A:0.54488247427;TBP:0.523928273838;KLF4:0.519482483672;NANOG{mouse}:0.507752045508;TAL1_TCF{3,4,12}:0.456218920066;ELK1,4_GABP{A,B1}:0.41263717997;ALX4:0.407697741958;PAX8:0.402778845189;ESR1:0.38980146021;TFAP2B:0.384023868294;BACH2:0.372523563045;LHX3,4:0.369922579199;MYBL2:0.363983720023;NFATC1..3:0.351595913744;REST:0.34789695048;NFE2L2:0.334668320437;GFI1:0.320945231929;ONECUT1,2:0.312770121692;YY1:0.287543508728;XBP1:0.286501835504;GTF2I:0.260194381035;ATF6:0.257886633432;PAX1,9:0.255544067403;SMAD1..7,9:0.252395740123;FOXL1:0.232481285726;FOSL2:0.230585320067;MAFB:0.224542486937;CDC5L:0.211716958025;HIC1:0.201539525151;LEF1_TCF7_TCF7L1,2:0.20135227797;FOS_FOS{B,L1}_JUN{B,D}:0.183280507364;AR:0.177681258659;SOX17:0.167565328037;ESRRA:0.162617759511;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.159460218463;ZNF423:0.155902597543;MTE{core}:0.147830203782;CRX:0.131859178669;E2F1..5:0.130416816742;TFDP1:0.125254977215;HNF1A:0.100990373221;bHLH_family:0.096084624464;SPZ1:0.0771993000618;AHR_ARNT_ARNT2:0.0625959211796;VSX1,2:0.0615270319595;ADNP_IRX_SIX_ZHX:0.0586953684746;TOPORS:0.057113571612;HLF:0.0180906355873;NFY{A,B,C}:0.0097979209944;NKX2-2,8:0.00467080083045;SOX2:0.00186957752005;NFE2:-0.0332586098276;NHLH1,2:-0.0333854403668;ZNF143:-0.043850848294;OCT4_SOX2{dimer}:-0.0616174991595;MZF1:-0.0702329298985;GATA6:-0.0716316117647;POU6F1:-0.0778172184451;MEF2{A,B,C,D}:-0.0784266803889;GATA4:-0.0880233686527;HNF4A_NR2F1,2:-0.114981373079;NR6A1:-0.115772877062;CEBPA,B_DDIT3:-0.123689387968;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.125606971816;MYB:-0.131794766232;PAX3,7:-0.143620415348;SP1:-0.148695153055;PRDM1:-0.151907349734;PATZ1:-0.157885842349;FOX{I1,J2}:-0.167700130487;PAX5:-0.168377682677;ZNF384:-0.172100931678;NFKB1_REL_RELA:-0.173768286372;RFX1:-0.201009814892;RUNX1..3:-0.211639595151;POU1F1:-0.213143765774;PAX6:-0.216211330188;DBP:-0.221239590949;EGR1..3:-0.239887469946;MAZ:-0.244996511376;ETS1,2:-0.254087136004;RREB1:-0.255164938609;STAT2,4,6:-0.255287122647;DMAP1_NCOR{1,2}_SMARC:-0.256365330654;LMO2:-0.273507935934;NRF1:-0.315537320329;NKX3-2:-0.318428698845;STAT5{A,B}:-0.332205201265;MYOD1:-0.332566237098;MTF1:-0.335782596043;TBX4,5:-0.353238829002;ELF1,2,4:-0.357013222061;JUN:-0.365886426054;SPIB:-0.379735492371;PITX1..3:-0.390188866494;PRRX1,2:-0.431363951537;EVI1:-0.439490142157;MYFfamily:-0.453963059473;ARID5B:-0.467504640433;SPI1:-0.481756655431;NKX2-3_NKX2-5:-0.500905558388;MED-1{core}:-0.503830877871;HMGA1,2:-0.504600171589;PAX2:-0.506801317286;FOXQ1:-0.519273957228;ZEB1:-0.525506096291;NR1H4:-0.527129977658;POU5F1:-0.534373563531;HOXA9_MEIS1:-0.539928925535;T:-0.543077926205;ZFP161:-0.548600313974;TLX2:-0.57387195748;PAX4:-0.5774137217;NFIX:-0.584414394157;SNAI1..3:-0.597885671249;HOX{A6,A7,B6,B7}:-0.613702995732;TEF:-0.627527393899;HBP1_HMGB_SSRP1_UBTF:-0.633842226822;BREu{core}:-0.633850081178;ALX1:-0.642746922168;NKX2-1,4:-0.646655092433;NKX3-1:-0.661473110345;AIRE:-0.661805438974;HOX{A4,D4}:-0.682192532411;FOX{F1,F2,J1}:-0.708515207199;NANOG:-0.714332366008;CREB1:-0.72099329829;ATF2:-0.738180604676;EP300:-0.740765057228;NFIL3:-0.749496538034;RFX2..5_RFXANK_RFXAP:-0.755349166998;NKX6-1,2:-0.7610250715;ATF5_CREB3:-0.762853019323;CUX2:-0.819156215745;FOXD3:-0.836482371737;RORA:-0.846761676645;IRF1,2:-0.896714180206;TGIF1:-0.908246421069;FOXP1:-0.921997137422;FOXM1:-0.924551840977;ATF4:-0.947827591713;SOX5:-0.971346635885;IRF7:-1.05786427913;STAT1,3:-1.05901112064;FOX{D1,D2}:-1.1200739815;FOXP3:-1.20384326971;IKZF2:-1.23138121073;FOXA2:-1.25415018077;FOXO1,3,4:-1.28726891777;ZBTB16:-1.387005763;CDX1,2,4:-1.43184633053;SREBF1,2:-1.45131629443;BPTF:-1.49060367067;FOXN1:-1.67110552204;PDX1:-1.67605021299;RBPJ:-1.76404489825 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11439-118H8;search_select_hide=table117:FF:11439-118H8 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Umbilical Artery, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12049 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12049
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12049
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.744 |
| 10 | 10 | 0.476 |
| 100 | 100 | 0.415 |
| 101 | 101 | 0.0651 |
| 102 | 102 | 0.798 |
| 103 | 103 | 0.412 |
| 104 | 104 | 0.294 |
| 105 | 105 | 0.801 |
| 106 | 106 | 0.13 |
| 107 | 107 | 0.0217 |
| 108 | 108 | 0.973 |
| 109 | 109 | 0.0232 |
| 11 | 11 | 0.0633 |
| 110 | 110 | 0.0879 |
| 111 | 111 | 0.639 |
| 112 | 112 | 0.432 |
| 113 | 113 | 0.0311 |
| 114 | 114 | 0.868 |
| 115 | 115 | 0.02 |
| 116 | 116 | 0.0169 |
| 117 | 117 | 0.42 |
| 118 | 118 | 0.943 |
| 119 | 119 | 0.499 |
| 12 | 12 | 0.683 |
| 120 | 120 | 0.0492 |
| 121 | 121 | 0.436 |
| 122 | 122 | 0.731 |
| 123 | 123 | 0.0202 |
| 124 | 124 | 0.465 |
| 125 | 125 | 0.84 |
| 126 | 126 | 0.959 |
| 127 | 127 | 0.796 |
| 128 | 128 | 0.352 |
| 129 | 129 | 0.589 |
| 13 | 13 | 0.674 |
| 130 | 130 | 0.478 |
| 131 | 131 | 0.441 |
| 132 | 132 | 0.348 |
| 133 | 133 | 0.713 |
| 134 | 134 | 0.284 |
| 135 | 135 | 0.509 |
| 136 | 136 | 0.447 |
| 137 | 137 | 0.0723 |
| 138 | 138 | 0.382 |
| 139 | 139 | 0.878 |
| 14 | 14 | 0.354 |
| 140 | 140 | 0.712 |
| 141 | 141 | 0.57 |
| 142 | 142 | 0.567 |
| 143 | 143 | 0.00845 |
| 144 | 144 | 0.729 |
| 145 | 145 | 0.45 |
| 146 | 146 | 0.672 |
| 147 | 147 | 0.0611 |
| 148 | 148 | 0.362 |
| 149 | 149 | 0.0383 |
| 15 | 15 | 0.662 |
| 150 | 150 | 0.0753 |
| 151 | 151 | 0.919 |
| 152 | 152 | 0.0427 |
| 153 | 153 | 0.399 |
| 154 | 154 | 0.26 |
| 155 | 155 | 0.1 |
| 156 | 156 | 0.934 |
| 157 | 157 | 0.143 |
| 158 | 158 | 0.0157 |
| 159 | 159 | 0.415 |
| 16 | 16 | 0.163 |
| 160 | 160 | 0.017 |
| 161 | 161 | 0.371 |
| 162 | 162 | 0.169 |
| 163 | 163 | 0.928 |
| 164 | 164 | 0.711 |
| 165 | 165 | 0.321 |
| 166 | 166 | 0.37 |
| 167 | 167 | 0.328 |
| 168 | 168 | 0.963 |
| 169 | 169 | 0.0848 |
| 17 | 17 | 0.16 |
| 18 | 18 | 0.368 |
| 19 | 19 | 0.0808 |
| 2 | 2 | 0.236 |
| 20 | 20 | 0.464 |
| 21 | 21 | 0.648 |
| 22 | 22 | 0.186 |
| 23 | 23 | 0.476 |
| 24 | 24 | 0.318 |
| 25 | 25 | 0.513 |
| 26 | 26 | 0.225 |
| 27 | 27 | 0.345 |
| 28 | 28 | 0.166 |
| 29 | 29 | 0.473 |
| 3 | 3 | 0.635 |
| 30 | 30 | 0.233 |
| 31 | 31 | 0.577 |
| 32 | 32 | 2.88729e-7 |
| 33 | 33 | 0.753 |
| 34 | 34 | 0.236 |
| 35 | 35 | 0.79 |
| 36 | 36 | 0.735 |
| 37 | 37 | 0.0795 |
| 38 | 38 | 0.96 |
| 39 | 39 | 0.257 |
| 4 | 4 | 0.524 |
| 40 | 40 | 0.0766 |
| 41 | 41 | 0.776 |
| 42 | 42 | 0.86 |
| 43 | 43 | 0.669 |
| 44 | 44 | 0.1 |
| 45 | 45 | 0.487 |
| 46 | 46 | 0.169 |
| 47 | 47 | 0.475 |
| 48 | 48 | 0.136 |
| 49 | 49 | 0.725 |
| 5 | 5 | 0.556 |
| 50 | 50 | 0.386 |
| 51 | 51 | 0.986 |
| 52 | 52 | 0.867 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.992 |
| 55 | 55 | 0.702 |
| 56 | 56 | 0.497 |
| 57 | 57 | 0.878 |
| 58 | 58 | 0.327 |
| 59 | 59 | 0.0223 |
| 6 | 6 | 0.996 |
| 60 | 60 | 0.806 |
| 61 | 61 | 0.599 |
| 62 | 62 | 0.707 |
| 63 | 63 | 0.333 |
| 64 | 64 | 0.167 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.445 |
| 67 | 67 | 0.905 |
| 68 | 68 | 0.00584 |
| 69 | 69 | 0.377 |
| 7 | 7 | 0.744 |
| 70 | 70 | 0.973 |
| 71 | 71 | 0.546 |
| 72 | 72 | 0.317 |
| 73 | 73 | 0.00859 |
| 74 | 74 | 0.224 |
| 75 | 75 | 0.394 |
| 76 | 76 | 0.207 |
| 77 | 77 | 0.0108 |
| 78 | 78 | 0.746 |
| 79 | 79 | 0.0061 |
| 8 | 8 | 0.0479 |
| 80 | 80 | 0.933 |
| 81 | 81 | 0.934 |
| 82 | 82 | 0.694 |
| 83 | 83 | 0.749 |
| 84 | 84 | 0.742 |
| 85 | 85 | 0.845 |
| 86 | 86 | 0.872 |
| 87 | 87 | 0.0129 |
| 88 | 88 | 0.159 |
| 89 | 89 | 0.367 |
| 9 | 9 | 0.291 |
| 90 | 90 | 0.0759 |
| 91 | 91 | 0.827 |
| 92 | 92 | 0.777 |
| 93 | 93 | 0.595 |
| 94 | 94 | 0.851 |
| 95 | 95 | 0.0611 |
| 96 | 96 | 0.594 |
| 97 | 97 | 0.928 |
| 98 | 98 | 0.987 |
| 99 | 99 | 3.31206e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12049
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000176 human smooth muscle cell of umbilical artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
