FF:10035-101E8: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	paracentral gyrus, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10642
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	paracentral gyrus
dev stage	22-69 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3040378
catalog number	Cat:636574
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005480

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10642		CAGE		DRX008699		DRR009571

Accession ID Hg19

Library id		BAM		CTSS
CNhs10642		DRZ000996		DRZ002381

Accession ID Hg38

Library id		BAM		CTSS
CNhs10642		DRZ012346		DRZ013731

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.346
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.342
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.055
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.104
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.5
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0284
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.148
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.126
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.168
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.126
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0284
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0448
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0284
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0284
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.104
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.0284
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.208
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.97
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0945
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.613
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0284
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.055
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.648
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.418
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.118
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.384
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.0801
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.289
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.257
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.57
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.418
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.667
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0284
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.126
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.104
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0284
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.732
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.104
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.148
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.407
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0284
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.206
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0284
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10642

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00816
MA0003.1	MA0003.1	0.376
MA0004.1	MA0004.1	0.457
MA0006.1	MA0006.1	0.392
MA0007.1	MA0007.1	0.194
MA0009.1	MA0009.1	0.18
MA0014.1	MA0014.1	0.681
MA0017.1	MA0017.1	0.0047
MA0018.2	MA0018.2	0.0535
MA0019.1	MA0019.1	0.811
MA0024.1	MA0024.1	0.99
MA0025.1	MA0025.1	0.217
MA0027.1	MA0027.1	0.489
MA0028.1	MA0028.1	0.12
MA0029.1	MA0029.1	0.138
MA0030.1	MA0030.1	0.179
MA0031.1	MA0031.1	0.962
MA0035.2	MA0035.2	0.135
MA0038.1	MA0038.1	0.0511
MA0039.2	MA0039.2	0.242
MA0040.1	MA0040.1	0.435
MA0041.1	MA0041.1	0.278
MA0042.1	MA0042.1	0.657
MA0043.1	MA0043.1	0.379
MA0046.1	MA0046.1	0.124
MA0047.2	MA0047.2	0.0881
MA0048.1	MA0048.1	0.103
MA0050.1	MA0050.1	0.00631
MA0051.1	MA0051.1	0.117
MA0052.1	MA0052.1	0.108
MA0055.1	MA0055.1	0.00281
MA0057.1	MA0057.1	0.948
MA0058.1	MA0058.1	0.422
MA0059.1	MA0059.1	0.0842
MA0060.1	MA0060.1	0.227
MA0061.1	MA0061.1	0.00938
MA0062.2	MA0062.2	0.0293
MA0065.2	MA0065.2	4.35621e-4
MA0066.1	MA0066.1	0.0328
MA0067.1	MA0067.1	0.676
MA0068.1	MA0068.1	0.4
MA0069.1	MA0069.1	0.455
MA0070.1	MA0070.1	0.0808
MA0071.1	MA0071.1	0.0374
MA0072.1	MA0072.1	0.447
MA0073.1	MA0073.1	0.354
MA0074.1	MA0074.1	0.194
MA0076.1	MA0076.1	0.292
MA0077.1	MA0077.1	0.191
MA0078.1	MA0078.1	0.873
MA0079.2	MA0079.2	0.4
MA0080.2	MA0080.2	2.79766e-8
MA0081.1	MA0081.1	0.0572
MA0083.1	MA0083.1	0.102
MA0084.1	MA0084.1	0.646
MA0087.1	MA0087.1	0.378
MA0088.1	MA0088.1	0.138
MA0090.1	MA0090.1	0.251
MA0091.1	MA0091.1	0.434
MA0092.1	MA0092.1	0.367
MA0093.1	MA0093.1	0.496
MA0099.2	MA0099.2	1.0312e-10
MA0100.1	MA0100.1	0.7
MA0101.1	MA0101.1	0.00515
MA0102.2	MA0102.2	0.162
MA0103.1	MA0103.1	0.232
MA0104.2	MA0104.2	0.437
MA0105.1	MA0105.1	5.29358e-4
MA0106.1	MA0106.1	0.0343
MA0107.1	MA0107.1	0.00853
MA0108.2	MA0108.2	0.311
MA0111.1	MA0111.1	0.453
MA0112.2	MA0112.2	9.93903e-4
MA0113.1	MA0113.1	0.278
MA0114.1	MA0114.1	0.00388
MA0115.1	MA0115.1	0.404
MA0116.1	MA0116.1	0.0035
MA0117.1	MA0117.1	0.957
MA0119.1	MA0119.1	0.0412
MA0122.1	MA0122.1	0.798
MA0124.1	MA0124.1	0.711
MA0125.1	MA0125.1	0.241
MA0131.1	MA0131.1	0.893
MA0135.1	MA0135.1	0.0222
MA0136.1	MA0136.1	4.27816e-10
MA0137.2	MA0137.2	0.561
MA0138.2	MA0138.2	0.181
MA0139.1	MA0139.1	0.398
MA0140.1	MA0140.1	0.0159
MA0141.1	MA0141.1	0.0158
MA0142.1	MA0142.1	0.969
MA0143.1	MA0143.1	0.939
MA0144.1	MA0144.1	0.304
MA0145.1	MA0145.1	0.23
MA0146.1	MA0146.1	0.0101
MA0147.1	MA0147.1	0.31
MA0148.1	MA0148.1	0.0887
MA0149.1	MA0149.1	0.0168
MA0150.1	MA0150.1	0.00276
MA0152.1	MA0152.1	0.919
MA0153.1	MA0153.1	0.452
MA0154.1	MA0154.1	0.0412
MA0155.1	MA0155.1	0.666
MA0156.1	MA0156.1	2.09071e-5
MA0157.1	MA0157.1	0.6
MA0159.1	MA0159.1	0.00594
MA0160.1	MA0160.1	0.0478
MA0162.1	MA0162.1	0.119
MA0163.1	MA0163.1	3.28329e-6
MA0164.1	MA0164.1	0.731
MA0258.1	MA0258.1	0.0102
MA0259.1	MA0259.1	0.756

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10642

Novel motif	Logo	P-value
1	1	0.033
10	10	0.0256
100	100	0.261
101	101	0.896
102	102	0.792
103	103	0.23
104	104	0.147
105	105	0.299
106	106	0.058
107	107	0.129
108	108	0.829
109	109	0.01
11	11	0.0149
110	110	0.0367
111	111	0.0667
112	112	0.335
113	113	0.662
114	114	0.0895
115	115	0.951
116	116	0.165
117	117	0.00907
118	118	0.0982
119	119	0.108
12	12	0.753
120	120	0.136
121	121	0.674
122	122	0.537
123	123	0.57
124	124	0.0275
125	125	0.164
126	126	0.029
127	127	0.493
128	128	0.171
129	129	0.538
13	13	0.00119
130	130	0.519
131	131	0.0669
132	132	0.775
133	133	0.0015
134	134	0.262
135	135	0.162
136	136	0.0145
137	137	0.763
138	138	0.833
139	139	0.0991
14	14	0.884
140	140	0.114
141	141	0.26
142	142	0.854
143	143	0.0142
144	144	0.88
145	145	0.0782
146	146	0.624
147	147	0.973
148	148	0.127
149	149	0.279
15	15	0.0707
150	150	0.181
151	151	0.649
152	152	0.149
153	153	0.737
154	154	0.616
155	155	0.379
156	156	0.389
157	157	0.401
158	158	0.719
159	159	0.0483
16	16	0.0707
160	160	0.184
161	161	0.169
162	162	0.976
163	163	0.83
164	164	0.0168
165	165	0.0443
166	166	0.863
167	167	0.335
168	168	0.72
169	169	0.00757
17	17	0.154
18	18	0.192
19	19	0.204
2	2	0.997
20	20	0.0904
21	21	0.077
22	22	0.25
23	23	0.452
24	24	0.108
25	25	0.486
26	26	6.70521e-5
27	27	0.976
28	28	0.703
29	29	0.0113
3	3	0.0263
30	30	0.591
31	31	0.89
32	32	0.0271
33	33	0.0685
34	34	0.774
35	35	0.476
36	36	0.086
37	37	0.0451
38	38	0.309
39	39	0.241
4	4	0.922
40	40	0.0511
41	41	0.425
42	42	0.176
43	43	0.106
44	44	0.0892
45	45	0.812
46	46	0.0497
47	47	0.0621
48	48	0.0526
49	49	0.131
5	5	0.486
50	50	0.356
51	51	0.526
52	52	0.64
53	53	0.967
54	54	0.484
55	55	0.359
56	56	0.484
57	57	0.243
58	58	0.309
59	59	0.137
6	6	0.561
60	60	0.0805
61	61	0.0729
62	62	0.17
63	63	0.158
64	64	0.213
65	65	0.278
66	66	0.303
67	67	0.355
68	68	0.335
69	69	0.404
7	7	0.0568
70	70	0.0186
71	71	0.0086
72	72	0.507
73	73	0.0486
74	74	0.638
75	75	0.0292
76	76	0.383
77	77	0.215
78	78	0.00308
79	79	0.168
8	8	0.0509
80	80	0.993
81	81	0.544
82	82	0.453
83	83	0.173
84	84	0.661
85	85	0.259
86	86	0.213
87	87	0.00841
88	88	0.868
89	89	0.535
9	9	0.521
90	90	0.0355
91	91	0.429
92	92	0.487
93	93	0.601
94	94	0.0513
95	95	0.0333
96	96	0.844
97	97	0.759
98	98	0.206
99	99	0.812

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10642

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010035 human paracentral gyrus - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0007190 (paracentral gyrus)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010035 (human paracentral gyrus - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0000200,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0007190,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005743,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005480
+|accession_numbers=CAGE;DRX008699;DRR009571;DRZ000996;DRZ002381;DRZ012346;DRZ013731
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0007190,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010035
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.53!334.92!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.37!235.10!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.33!214.36!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.14!137.30!SOX10;;chr17:53342311..53342400,+!p1@HLF!2.07!132.17!HLF;;chr9:114287433..114287513,+!p1@ZNF483!1.98!237.19!ZNF483;;chr21:34398234..34398250,+!p1@OLIG2!1.94!86.38!OLIG2;;chr11:61520075..61520136,+!p1@C11orf9!1.92!170.26!C11orf9;;chr9:77112244..77112262,+!p1@RORB!1.91!89.82!RORB;;chr4:57547454..57547469,-!p1@HOPX!1.86!72.27!HOPX;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!70.64!NEUROD2;;chr10:64134120..64134183,+!p1@ZNF365!1.84!80.71!ZNF365;;chr14:29235961..29236008,+!p1@FOXG1!1.82!64.84!FOXG1;;chr2:2334997..2335053,-!p1@MYT1L!1.81!63.15!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.78!58.69!ARNT2;;chr2:166326200..166326216,+!p1@CSRNP3!1.75!80.03!CSRNP3;;chr5:88178983..88179012,-!p1@MEF2C!1.74!392.46!MEF2C;;chr2:162272785..162272836,+!p1@TBR1!1.73!52.75!TBR1;;chr8:40755333..40755352,-!p1@ZMAT4!1.72!51.60!ZMAT4;;chr2:95963052..95963106,+!p1@KCNIP3!1.70!48.83!KCNIP3;;chr2:145277882..145277967,-!p3@ZEB2!1.68!78.82!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.67!45.66!SOX2;;chr15:80735246..80735321,+!p3@ARNT2!1.65!44.17!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.63!54.37!PRDM8;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.63!41.54!SMARCE1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.62!41.00!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.62!40.73!NFIX;;chr8:53322304..53322340,-!p1@ST18!1.61!40.18!ST18;;chr18:53070846..53070902,-!p6@TCF4!1.59!37.55!TCF4;;chr19:13135582..13135600,+!p3@NFIX!1.56!35.05!NFIX;;chr21:34442540..34442560,+!p2@OLIG1!1.55!34.58!OLIG1;;chr7:31380292..31380351,-!p1@NEUROD6!1.55!34.24!NEUROD6;;chr12:26277817..26277863,-!p2@BHLHE41!1.52!43.16!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.51!31.07!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!113.73!MEF2C;;chr16:1031762..1031781,+!p1@SOX8!1.47!28.30!SOX8;;chr19:57352109..57352153,-!p2@ZIM2!1.46!27.83!ZIM2;;chr3:181429741..181429767,+!p2@SOX2!1.44!26.74!SOX2;;chr15:80696703..80696754,+!p1@ARNT2!1.43!33.90!ARNT2;;chr14:29234581..29234601,+!p2@FOXG1!1.42!25.19!FOXG1;;chr2:95963120..95963136,+!p2@KCNIP3!1.41!24.99!KCNIP3;;chrX:25034067..25034088,-!p1@ARX!1.40!24.38!ARX;;chr22:41763452..41763466,+!p2@TEF!1.40!24.25!TEF;;chr11:125034640..125034655,+!p1@PKNOX2!1.40!24.18!PKNOX2;;chr1:151032860..151032918,+!p1@MLLT11!1.37!259.21!MLLT11;;chr12:106976774..106976788,+!p1@RFX4!1.37!22.49!RFX4;;chr14:29236269..29236285,+!p3@FOXG1!1.37!22.42!FOXG1;;chr10:134599649..134599653,-!p1@NKX6-2!1.37!22.29!NKX6-2;;chr4:57522166..57522260,-!p2@HOPX!1.35!24.72!HOPX;;chr2:162272889..162272915,+!p2@TBR1!1.35!21.54!TBR1;;chr8:145560371..145560449,-!p1@SCRT1!1.35!21.54!SCRT1;;chr12:54779511..54779577,-!p5@ZNF385A!1.35!21.27!ZNF385A;;chr14:33403881..33403924,+!p1@NPAS3!1.34!20.67!NPAS3;;chr2:166428839..166428859,+!p2@CSRNP3!1.33!20.46!CSRNP3;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.40!KDM5D;;chr11:8102846..8102892,+!p1@TUB!1.32!27.49!TUB;;chr11:113930425..113930471,+!p1@ZBTB16!1.30!26.88!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.29!22.76!DPF1;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.61!ZNF540;;chr12:106976678..106976708,+!p2@RFX4!1.27!17.63!RFX4;;chr1:244214577..244214593,+!p1@ZNF238!1.27!17.49!ZNF238;;chr10:48355030..48355090,+!p1@ZNF488!1.26!22.22!ZNF488;;chr7:63505799..63505904,+!p1@ZNF727!1.26!17.22!ZNF727;;chr1:214161272..214161322,+!p1@PROX1!1.24!23.23!PROX1;;chr8:53322347..53322378,-!p2@ST18!1.24!16.28!ST18;;chr12:54785074..54785122,-!p2@ZNF385A!1.23!24.65!ZNF385A;;chr10:64133862..64133884,+!p4@ZNF365!1.23!16.14!ZNF365;;chr19:46801639..46801699,+!p1@HIF3A!1.23!15.94!HIF3A;;chr1:151032922..151032951,+!p2@MLLT11!1.22!25.93!MLLT11;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.99!DACH2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.20!14.99!POU3F3;;chrX:118739835..118739862,-!p1@NKRF!1.19!15.94!NKRF;;chr9:126774018..126774055,+!p1@LHX2!1.19!14.52!LHX2;;chr1:2461692..2461710,-!p1@HES5!1.19!14.32!HES5;;chr17:7492684..7492778,-!p2@SOX15!1.17!29.31!SOX15;;chr8:145560111..145560165,-!p2@SCRT1!1.17!13.78!SCRT1;;chr19:30863271..30863338,+!p1@ZNF536!1.16!13.51!ZNF536;;chr6:15401104..15401166,+!p5@JARID2!1.16!13.37!JARID2;;chr8:22550982..22550999,-!p1@EGR3!1.15!36.61!EGR3;;chr4:57522598..57522664,-!p3@HOPX!1.15!13.24!HOPX;;chr3:24536253..24536328,-!p1@THRB!1.14!24.45!THRB;;chr6:19837592..19837621,+!p1@ID4!1.13!76.25!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!44.44!BHLHE41;;chr6:126112039..126112062,+!p8@NCOA7!1.13!15.26!NCOA7;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.36!EMX2;;chr2:166428861..166428883,+!p3@CSRNP3!1.12!12.29!CSRNP3;;chr3:21792682..21792720,-!p1@ZNF385D!1.11!11.95!ZNF385D;;chr2:42721205..42721307,+!p4@MTA3!1.10!11.48!MTA3;;chr3:141105705..141105770,+!p4@ZBTB38!1.09!13.91!ZBTB38;;chr2:145275982..145276003,-!p7@ZEB2!1.09!11.28!ZEB2;;chr2:73520667..73520683,-!p1@EGR4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000200;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10035-101E8
 |is_a=EFO:0002091;;FF:0010035
 |is_obsolete=
+|library_id=CNhs10642
+|library_id_phase_based=2:CNhs10642
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10035
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10035
 |name=paracentral gyrus, adult, pool1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10642,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636574
@@ Line 55: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E8
+|rna_tube_id=1.01E+10
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10035-101E8;search_select_hide=table117:FF:10035-101E8
 }}

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FF:10035-101E8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0