FF:10201-103F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005681 | ||
|accession_numbers=CAGE;DRX008718;DRR009590;DRZ001015;DRZ002400;DRZ012365;DRZ013750 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000998,UBERON:0000991,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0006868,UBERON:0005904,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0002530,UBERON:0004175,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010201 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.94!873.45!GATA2;;chr11:34642612..34642646,+!p1@EHF!2.59!385.28!EHF;;chr11:34645791..34645836,+!p3@EHF!2.41!257.42!EHF;;chr12:115122318..115122331,-!p2@TBX3!2.28!188.41!TBX3;;chr10:8096631..8096660,+!p1@GATA3!2.23!201.53!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.18!149.46!POU3F3;;chr10:119301928..119301955,+!p7@EMX2!2.12!131.67!EMX2;;chr11:34535297..34535317,-!p1@ELF5!2.12!129.98!ELF5;;chr9:102584159..102584174,+!p2@NR4A3!2.05!192.64!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!2.00!1176.59!NR4A1;;chr17:46682321..46682362,-!p1@HOXB6!1.95!88.91!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.94!85.95!ELF5;;chr2:157189180..157189290,-!p1@NR4A2!1.88!373.85!NR4A2;;chr17:46675558..46675577,-!p2@HOXB6!1.87!72.40!HOXB6;;chr11:34642656..34642667,+!p2@EHF!1.85!69.86!EHF;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.05!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.83!66.05!RORC;;chr12:115122303..115122314,-!p6@TBX3!1.81!63.08!TBX3;;chr9:77112244..77112262,+!p1@RORB!1.79!67.32!RORB;;chr16:54320617..54320643,-!p3@IRX3!1.77!74.09!IRX3;;chr6:134210243..134210257,+!p1@TCF21!1.77!58.43!TCF21;;chr11:34535276..34535287,-!p3@ELF5!1.69!48.27!ELF5;;chr1:209979467..209979494,-!p1@IRF6!1.65!48.69!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.65!43.19!HOXB8;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.19!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.62!40.22!ZNF750;;chr16:54320646..54320672,-!p2@IRX3!1.61!59.70!IRX3;;chr20:51588873..51588953,+!p1@TSHZ2!1.60!51.23!TSHZ2;;chr2:114036488..114036504,-!p1@PAX8!1.59!37.68!PAX8;;chr10:119302352..119302362,+!p9@EMX2!1.57!36.41!EMX2;;chr12:115122224..115122233,-!p12@TBX3!1.57!35.99!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!1.54!43.61!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.45!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.52!45.73!ZBTB16;;chr19:54058073..54058088,+!p1@ZNF331!1.52!32.18!ZNF331;;chr17:46667594..46667619,-!p1@HOXB3!1.52!31.75!HOXB3;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.41!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.33!HIF3A;;chr2:177001290..177001315,+!p1@HOXD3!1.49!30.06!HOXD3;;chr17:46667628..46667642,-!p2@HOXB3!1.48!29.21!HOXB3;;chr12:52437488..52437507,+!p2@NR4A1!1.48!29.21!NR4A1;;chr14:105935396..105935413,+!p4@MTA1!1.47!28.79!MTA1;;chr10:119302150..119302163,+!p8@EMX2!1.44!26.67!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.44!26.25!PAX2;;chr10:119302645..119302712,+!p3@EMX2!1.44!26.25!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.43!155.81!GATA2;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.83!ELF3;;chrX:66763856..66763896,+!p1@AR!1.42!35.99!AR;;chr12:115122297..115122302,-!p15@TBX3!1.42!25.40!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.42!25.40!HOXD8;;chr10:119302268..119302282,+!p4@EMX2!1.41!24.56!EMX2;;chr5:50679228..50679288,+!p1@ISL1!1.41!24.56!ISL1;;chr9:4300050..4300118,-!p1@GLIS3!1.40!153.27!GLIS3;;chr10:8096772..8096787,+!p2@GATA3!1.40!28.37!GATA3;;chr7:97840743..97840786,+!p1@BHLHA15!1.40!24.13!BHLHA15;;chr9:102584262..102584276,+!p1@NR4A3!1.39!52.08!NR4A3;;chr17:45928521..45928539,-!p1@SP6!1.39!23.29!SP6;;chr2:177053386..177053402,+!p1@HOXD1!1.38!22.86!HOXD1;;chr22:41763452..41763466,+!p2@TEF!1.37!22.44!TEF;;chr12:115122262..115122271,-!p7@TBX3!1.37!22.44!TBX3;;chr17:59477233..59477263,+!p1@TBX2!1.36!66.47!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.02!KDM5D;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.14!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.35!24.98!GATA3;;chr14:105935426..105935440,+!p9@MTA1!1.35!21.59!MTA1;;chr7:138666053..138666146,-!p1@KIAA1549!1.34!85.10!KIAA1549;;chr10:119302508..119302559,+!p5@EMX2!1.34!20.75!EMX2;;chr10:119302182..119302196,+!p6@EMX2!1.33!20.32!EMX2;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.50!ZNF90;;chr14:75745523..75745537,+!p1@FOS!1.30!2201.61!FOS;;chr8:77593474..77593612,+!p1@ZFHX4!1.28!74.52!ZFHX4;;chr1:2985760..2985774,+!p1@PRDM16!1.28!18.21!PRDM16;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.29!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.78!HEYL;;chr17:46675539..46675551,-!p7@HOXB6!1.27!17.78!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!1.27!17.78!ZBTB16;;chr1:212782094..212782109,+!p1@ATF3!1.26!452.18!ATF3;;chr16:54320675..54320715,-!p1@IRX3!1.25!35.56!IRX3;;chr1:40367668..40367684,-!p2@MYCL1!1.25!16.94!MYCL1;;chr16:54320101..54320125,-!p4@IRX3!1.23!22.86!IRX3;;chr12:115122005..115122016,-!p3@TBX3!1.23!19.05!TBX3;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.09!NR4A1;;chr6:19837592..19837621,+!p1@ID4!1.22!93.57!ID4;;chr9:4299979..4299996,-!p3@GLIS3!1.22!25.40!GLIS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.67!POU3F3;;chr3:18466787..18466839,-!p1@SATB1!1.21!66.90!SATB1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.56!ZBTB16;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.36!HOXB6;;chr11:34643148..34643157,+!p16@EHF!1.21!15.24!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.29!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!1.20!23.29!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.20!14.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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.94!873.45!GATA2;;chr11:34642612..34642646,+!p1@EHF!2.59!385.28!EHF;;chr11:34645791..34645836,+!p3@EHF!2.41!257.42!EHF;;chr12:115122318..115122331,-!p2@TBX3!2.28!188.41!TBX3;;chr10:8096631..8096660,+!p1@GATA3!2.23!201.53!GATA3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.18!149.46!POU3F3;;chr10:119301928..119301955,+!p7@EMX2!2.12!131.67!EMX2;;chr11:34535297..34535317,-!p1@ELF5!2.12!129.98!ELF5;;chr9:102584159..102584174,+!p2@NR4A3!2.05!192.64!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!2.00!1176.59!NR4A1;;chr17:46682321..46682362,-!p1@HOXB6!1.95!88.91!HOXB6;;chr11:34535332..34535347,-!p2@ELF5!1.94!85.95!ELF5;;chr2:157189180..157189290,-!p1@NR4A2!1.88!373.85!NR4A2;;chr17:46675558..46675577,-!p2@HOXB6!1.87!72.40!HOXB6;;chr11:34642656..34642667,+!p2@EHF!1.85!69.86!EHF;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.05!EMX2;;chr1:151804244..151804310,-!p1@RORC!1.83!66.05!RORC;;chr12:115122303..115122314,-!p6@TBX3!1.81!63.08!TBX3;;chr9:77112244..77112262,+!p1@RORB!1.79!67.32!RORB;;chr16:54320617..54320643,-!p3@IRX3!1.77!74.09!IRX3;;chr6:134210243..134210257,+!p1@TCF21!1.77!58.43!TCF21;;chr11:34535276..34535287,-!p3@ELF5!1.69!48.27!ELF5;;chr1:209979467..209979494,-!p1@IRF6!1.65!48.69!IRF6;;chr17:46692457..46692484,-!p2@HOXB8!1.65!43.19!HOXB8;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.19!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.62!40.22!ZNF750;;chr16:54320646..54320672,-!p2@IRX3!1.61!59.70!IRX3;;chr20:51588873..51588953,+!p1@TSHZ2!1.60!51.23!TSHZ2;;chr2:114036488..114036504,-!p1@PAX8!1.59!37.68!PAX8;;chr10:119302352..119302362,+!p9@EMX2!1.57!36.41!EMX2;;chr12:115122224..115122233,-!p12@TBX3!1.57!35.99!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!1.54!43.61!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.45!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.52!45.73!ZBTB16;;chr19:54058073..54058088,+!p1@ZNF331!1.52!32.18!ZNF331;;chr17:46667594..46667619,-!p1@HOXB3!1.52!31.75!HOXB3;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.41!MECOM;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.33!HIF3A;;chr2:177001290..177001315,+!p1@HOXD3!1.49!30.06!HOXD3;;chr17:46667628..46667642,-!p2@HOXB3!1.48!29.21!HOXB3;;chr12:52437488..52437507,+!p2@NR4A1!1.48!29.21!NR4A1;;chr14:105935396..105935413,+!p4@MTA1!1.47!28.79!MTA1;;chr10:119302150..119302163,+!p8@EMX2!1.44!26.67!EMX2;;chr10:102505493..102505546,+!p2@PAX2!1.44!26.25!PAX2;;chr10:119302645..119302712,+!p3@EMX2!1.44!26.25!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.43!155.81!GATA2;;chr1:201979743..201979762,+!p1@ELF3!1.43!25.83!ELF3;;chrX:66763856..66763896,+!p1@AR!1.42!35.99!AR;;chr12:115122297..115122302,-!p15@TBX3!1.42!25.40!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!1.42!25.40!HOXD8;;chr10:119302268..119302282,+!p4@EMX2!1.41!24.56!EMX2;;chr5:50679228..50679288,+!p1@ISL1!1.41!24.56!ISL1;;chr9:4300050..4300118,-!p1@GLIS3!1.40!153.27!GLIS3;;chr10:8096772..8096787,+!p2@GATA3!1.40!28.37!GATA3;;chr7:97840743..97840786,+!p1@BHLHA15!1.40!24.13!BHLHA15;;chr9:102584262..102584276,+!p1@NR4A3!1.39!52.08!NR4A3;;chr17:45928521..45928539,-!p1@SP6!1.39!23.29!SP6;;chr2:177053386..177053402,+!p1@HOXD1!1.38!22.86!HOXD1;;chr22:41763452..41763466,+!p2@TEF!1.37!22.44!TEF;;chr12:115122262..115122271,-!p7@TBX3!1.37!22.44!TBX3;;chr17:59477233..59477263,+!p1@TBX2!1.36!66.47!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!1.36!22.02!KDM5D;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.14!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.35!24.98!GATA3;;chr14:105935426..105935440,+!p9@MTA1!1.35!21.59!MTA1;;chr7:138666053..138666146,-!p1@KIAA1549!1.34!85.10!KIAA1549;;chr10:119302508..119302559,+!p5@EMX2!1.34!20.75!EMX2;;chr10:119302182..119302196,+!p6@EMX2!1.33!20.32!EMX2;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.50!ZNF90;;chr14:75745523..75745537,+!p1@FOS!1.30!2201.61!FOS;;chr8:77593474..77593612,+!p1@ZFHX4!1.28!74.52!ZFHX4;;chr1:2985760..2985774,+!p1@PRDM16!1.28!18.21!PRDM16;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.29!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.78!HEYL;;chr17:46675539..46675551,-!p7@HOXB6!1.27!17.78!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!1.27!17.78!ZBTB16;;chr1:212782094..212782109,+!p1@ATF3!1.26!452.18!ATF3;;chr16:54320675..54320715,-!p1@IRX3!1.25!35.56!IRX3;;chr1:40367668..40367684,-!p2@MYCL1!1.25!16.94!MYCL1;;chr16:54320101..54320125,-!p4@IRX3!1.23!22.86!IRX3;;chr12:115122005..115122016,-!p3@TBX3!1.23!19.05!TBX3;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.09!NR4A1;;chr6:19837592..19837621,+!p1@ID4!1.22!93.57!ID4;;chr9:4299979..4299996,-!p3@GLIS3!1.22!25.40!GLIS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.67!POU3F3;;chr3:18466787..18466839,-!p1@SATB1!1.21!66.90!SATB1;;chr11:113930291..113930339,+!p2@ZBTB16!1.21!24.56!ZBTB16;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.36!HOXB6;;chr11:34643148..34643157,+!p16@EHF!1.21!15.24!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.29!ZBTB20;;chr9:4299959..4299974,-!p4@GLIS3!1.20!23.29!GLIS3;;chr11:34663654..34663663,+!p17@EHF!1.20!14.82!EHF;;chr12:52448151..52448200,+!p8@NR4A1!1.20!14.82!NR4A1;;chr13:72441315..72441454,-!p1@DACH1!1.19!28.79!DACH1;;chr8:102504979..102505010,+!p2@GRHL2!1.19!14.40!GRHL2;;chr17:46692624..46692659,-!p3@HOXB8!1.18!13.97!HOXB8;;chr1:61547894..61547968,+!p2@NFIA!1.16!38.95!NFIA;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.56!NR2F2;;chr9:102584241..102584261,+!p4@NR4A3!1.16!20.75!NR4A3;;chr3:114819101..114819121,-!p7@ZBTB20!1.16!13.55!ZBTB20;;chr17:46671504..46671541,-!p2@HOXB5!1.16!13.55!HOXB5;;chr3:39195037..39195069,-!p2@CSRNP1!1.15!80.87!CSRNP1;;chr9:14314131..14314147,-!p2@NFIB!1.15!72.40!NFIB;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.51!SATB1;;chr22:31739411..31739446,-!p5@PATZ1!1.15!13.12!PATZ1;;chr12:52448420..52448460,+!p5@NR4A1!1.15!13.12!NR4A1;;chr21:39870339..39870443,-!p1@ERG!1.15!13.12!ERG;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.67!TFAP2A;;chr12:52448293..52448318,+!p10@NR4A1!1.14!12.70!NR4A1;;chr1:170633348..170633399,+!p2@PRRX1!1.12!16.51!PRRX1;;chr14:75746722..75746777,+!p2@FOS!1.12!15.67!FOS;;chr12:52448338..52448401,+!p7@NR4A1!1.12!12.28!NR4A1;;chr20:51589133..51589159,+!p2@TSHZ2!1.12!12.28!TSHZ2;;chr22:29196433..29196445,-!p4@XBP1!1.11!13.12!XBP1;;chr12:115121802..115121814,-!p5@TBX3!1.11!11.85!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!1.10!256.15!AEBP1;;chr9:102584128..102584144,+!p3@NR4A3!1.10!22.02!NR4A3;;chr16:54319010..54319041,-!p8@IRX3!1.09!11.43!IRX3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.09!11.43!LHX1;;chr1:61548225..61548299,+!p1@NFIA!1.08!143.10!NFIA;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.08!72.82!ZNF580;;chr12:104531823..104531849,-!p5@NFYB!1.08!23.29!NFYB;;chr17:59477197..59477212,+!p2@TBX2!1.08!19.05!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!1.08!18.63!CASZ1;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.01!HOXA3;;chr2:177016336..177016350,+!p1@HOXD4!1.08!11.01!HOXD4;;chr3:189507432..189507459,+!p1@TP63!1.08!11.01!TP63;;chr6:10412392..10412409,-!p4@TFAP2A!1.07!12.28!TFAP2A;;chr22:38597987..38598021,+!p2@MAFF!1.06!65.20!MAFF;;chrX:66763815..66763854,+!p2@AR!1.06!13.97!AR;;chr10:77161504..77161530,-!p1@ZNF503!1.05!137.60!ZNF503;;chr17:38256822..38256851,-!p1@NR1D1!1.05!80.44!NR1D1;;chr16:54320322..54320343,-!p7@IRX3!1.05!10.16!IRX3;;chrX:66763914..66763933,+!p3@AR!1.05!10.16!AR;;chr1:170633058..170633084,+!p5@PRRX1!1.05!10.16!PRRX1;;chr2:157186630..157186686,-!p6@NR4A2!1.05!10.16!NR4A2;;chr20:30193083..30193098,+!p1@ID1!1.04!805.71!ID1;;chr3:193853927..193853944,+!p1@HES1!1.04!326.01!HES1;;chr22:29196492..29196503,-!p3@XBP1!1.04!15.67!XBP1;;chr16:54320158..54320200,-!p5@IRX3!1.04!14.40!IRX3;;chr5:92919100..92919135,+!p3@NR2F1!1.04!12.28!NR2F1;;chr3:24536253..24536328,-!p1@THRB!1.03!18.63!THRB;;chr9:4300016..4300039,-!p2@GLIS3!1.03!16.94!GLIS3;;chr4:174451370..174451387,-!p1@HAND2!1.03!9.74!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.03!9.74!EMX2;;chr13:37494275..37494304,-!p2@SMAD9!1.03!9.74!SMAD9;;chr19:45971246..45971265,+!p1@FOSB!1.02!179.52!FOSB;;chr17:17726907..17726958,-!p2@SREBF1!1.02!60.12!SREBF1;;chr17:46621937..46621966,-!p2@HOXB2!1.02!26.25!HOXB2;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.78!AEBP1;;chr15:96869222..96869251,+!p18@NR2F2!1.01!11.01!NR2F2;;chr17:46675586..46675600,-!p6@HOXB6!1.01!9.31!HOXB6;;chrX:66764343..66764362,+!p4@AR!1.01!9.31!AR;;chr10:102505327..102505344,+!p1@PAX2!1.01!9.31!PAX2;;chr11:34645764..34645775,+!p9@EHF!1.01!9.31!EHF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.01!9.31!PEG3;;chr1:10856665..10856683,-!p4@CASZ1!1.01!9.31!CASZ1;;chr1:201979703..201979721,+!p2@ELF3!1.01!9.31!ELF3;;chr20:18038521..18038571,-!p1@OVOL2!1.01!9.31!OVOL2;;chr3:128205876..128205904,-!p4@GATA2!1.01!9.31!GATA2;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.08!NFIB;;chr17:70117153..70117174,+!p1@SOX9!1.00!93.57!SOX9;;chr7:27239703..27239715,-!p1@HOXA13!1.00!8.89!HOXA13;;chr22:38380543..38380569,-!p1@SOX10!1.00!8.89!SOX10;;chr3:128205779..128205797,-!p5@GATA2!1.00!8.89!GATA2;;chr19:54041669..54041697,+!p2@ZNF331!1.00!8.89!ZNF331;;chr3:126076242..126076257,-!p1@KLF15!0.99!11.01!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.16!PRRX1;;chr9:114287433..114287513,+!p1@ZNF483!0.98!22.86!ZNF483;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.85!HOXB7;;chr8:77593448..77593471,+!p2@ZFHX4!0.98!8.47!ZFHX4;;chr14:105935576..105935594,+!p11@MTA1!0.98!8.47!MTA1;;chr15:96873984..96873999,+!p3@NR2F2!0.97!62.24!NR2F2;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.78!SOX15;;chrX:152599604..152599626,+!p1@ZNF275!0.96!64.35!ZNF275;;chrX:101186981..101187030,-!p1@ZMAT1!0.96!27.52!ZMAT1;;chr5:158526917..158526932,-!p1@EBF1!0.96!20.75!EBF1;;chr17:59477275..59477286,+!p3@TBX2!0.96!11.01!TBX2;;chr17:53342311..53342400,+!p1@HLF!0.96!9.31!HLF;;chr8:55370487..55370503,+!p1@SOX17!0.96!8.04!SOX17;;chr11:34533257..34533273,-!p4@ELF5!0.96!8.04!ELF5;;chr12:115121770..115121781,-!p4@TBX3!0.96!8.04!TBX3;;chr3:128207349..128207386,-!p3@GATA2!0.96!8.04!GATA2;;chr7:128577972..128578047,+!p1@IRF5!0.95!12.70!IRF5;;chr15:60884706..60884743,-!p1@RORA!0.94!41.07!RORA;;chr3:114866084..114866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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0003918,UBERON:0005754,UBERON:0007687,UBERON:0007297,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/seminal%2520vesicle%252c%2520adult.CNhs12851.10201-103F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10201-103F3 | |id=FF:10201-103F3 | ||
|is_a=EFO:0002091;;FF:0010201 | |is_a=EFO:0002091;;FF:0010201 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12851 | |||
|library_id_phase_based=2:CNhs12851 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10201 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10201 | |||
|name=seminal vesicle, adult | |name=seminal vesicle, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12851,LSID973,release012,COMPLETED | |profile_hcage=CNhs12851,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.153323010348428,0.133206887634127,0,0,0,0,0.481859147557998,0,1.48406849810638,0.195785214551368,0,0,0,0.153323010348428,0,0,0,0,0.153323010348428,0,0,0,0,0,0,0.076661505174214,0,0,0,-0.0979578962680575,0,0,0.0203664205695654,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0,0.934087314868051,0.153323010348428,0,0,0,0,0,0,0,0.0524464840613795,0,0.0125796330910479,0,0.266413775268255,0,0.0665545113476988,0,0.0563306491058225,0,0,0.0559793831353307,0.153323010348428,0,0,0,0,0,0,0,0.153323010348428,0,0,0,0,0,0,0,0.0147186578292792,0.153323010348428,0,0,0.153323010348428,0,0,0.0347132431435354,0.0624054010353079,0.802798987707027,0,0.137210724889166,-0.0584468268118252,0.298312460370844,0.076661505174214,0,0,0,0.332289400368198,0.416056093114931,0,0,0,0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0197120887482472,0.153323010348428,0,0,1.04596005682368,1.15463919429411,0,0,0,0.153323010348428,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234214-10 | |rna_catalog_number=R1234214-10 | ||
| Line 57: | Line 78: | ||
|rna_tube_id=103F3 | |rna_tube_id=103F3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age=24 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 73: | Line 95: | ||
|sample_id=10201 | |sample_id=10201 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
| Line 79: | Line 101: | ||
|top_motifs=IKZF2:2.71221779345;AR:2.19389563592;ARID5B:2.1332228025;XBP1:2.07034776557;SRF:1.95099126509;SNAI1..3:1.79640076735;FOXP1:1.78431947391;GATA4:1.74069268381;TLX2:1.68787845712;MYFfamily:1.64261360365;FOXO1,3,4:1.64260588355;ESR1:1.54565121527;FOXN1:1.51304280043;NR3C1:1.50992471477;ATF6:1.47812615388;ZIC1..3:1.47384347733;UFEwm:1.46481507707;HMX1:1.3616476855;NR6A1:1.34098814349;TFAP2{A,C}:1.31301485989;MAZ:1.30673901003;MZF1:1.25059740223;GTF2I:1.24808222321;T:1.23866603693;FOX{D1,D2}:1.20460519341;ZEB1:1.20457570589;SOX5:1.19971045663;MED-1{core}:1.19952071028;PRDM1:1.17145711842;PITX1..3:1.13446080155;TFCP2:1.13157355335;TFAP4:1.12717272139;NFE2L1:1.11044496124;HAND1,2:1.0808290367;MYBL2:1.06182614794;PAX6:1.06001297763;FOXL1:1.04770069;GFI1B:1.00859478381;CDC5L:1.00192277697;SPZ1:0.989026960969;HIC1:0.986574564554;RREB1:0.975511308269;SP1:0.970029492143;MTF1:0.891339997968;ZBTB6:0.887612483911;HBP1_HMGB_SSRP1_UBTF:0.856654578035;TLX1..3_NFIC{dimer}:0.848322669469;PATZ1:0.819776037917;NR5A1,2:0.813161803131;MYOD1:0.804237647947;TFAP2B:0.803886922902;TOPORS:0.789338437415;HOX{A4,D4}:0.786371607244;TEAD1:0.755782934832;SMAD1..7,9:0.75441788274;POU2F1..3:0.738468527412;BPTF:0.732562524281;HNF1A:0.704029167301;POU3F1..4:0.660860070925;FOXQ1:0.658889640962;RFX2..5_RFXANK_RFXAP:0.656735083156;GZF1:0.61816087573;GATA6:0.618128933664;MTE{core}:0.589290514515;PAX5:0.575342417946;DBP:0.537901054088;TBP:0.529234126967;XCPE1{core}:0.517219848308;NKX3-2:0.514436436992;EGR1..3:0.483553419843;ATF4:0.467461228559;KLF4:0.463454458205;NHLH1,2:0.462143662182;ZNF423:0.443201773022;ONECUT1,2:0.43438814432;HMGA1,2:0.413181385497;POU6F1:0.40460106893;EVI1:0.388246210134;GCM1,2:0.36108485357;HOXA9_MEIS1:0.355862688938;FOXP3:0.354107790284;NKX2-2,8:0.326269032438;RXR{A,B,G}:0.325071798804;TP53:0.266936359137;HOX{A6,A7,B6,B7}:0.253486046532;HSF1,2:0.213417239901;NFATC1..3:0.208343579647;STAT2,4,6:0.200138012456;EBF1:0.191566796775;NR1H4:0.183251712406;ZFP161:0.183240473778;NFIX:0.182906280852;RXRA_VDR{dimer}:0.1545005974;EP300:0.151229416838;LMO2:0.141161140333;FOXM1:0.133203925189;MEF2{A,B,C,D}:0.133050189121;RFX1:0.0986639597587;REST:0.0967214893495;RBPJ:0.09589189129;MAFB:0.0834030147586;BREu{core}:0.0586605098619;ATF5_CREB3:0.0523593962494;HES1:0.0284153050979;GTF2A1,2:0.0260658286161;ZBTB16:0.00719643281994;TBX4,5:-0.00612274193401;POU5F1:-0.0193129131643;ESRRA:-0.0301191139945;STAT1,3:-0.0333140373915;DMAP1_NCOR{1,2}_SMARC:-0.0670960584433;TEF:-0.103143127238;SREBF1,2:-0.104894558456;TGIF1:-0.109649952579;CREB1:-0.128244730337;ZNF238:-0.128343511151;TAL1_TCF{3,4,12}:-0.169415137936;AHR_ARNT_ARNT2:-0.18882913605;HNF4A_NR2F1,2:-0.189593836473;IRF7:-0.192523788543;ZNF384:-0.228869437383;SPI1:-0.231580967854;ETS1,2:-0.269568423026;CDX1,2,4:-0.303808854068;ALX4:-0.30578890989;IRF1,2:-0.327515040829;FOXD3:-0.36693380075;GLI1..3:-0.373167511251;ZNF143:-0.380719828096;HIF1A:-0.410395071614;PAX1,9:-0.455229690769;SPIB:-0.458396311067;IKZF1:-0.4603245559;NKX2-1,4:-0.464294779209;NFKB1_REL_RELA:-0.485761500363;GFI1:-0.52632354561;ATF2:-0.529592789973;ALX1:-0.545704613709;JUN:-0.57413591459;NKX2-3_NKX2-5:-0.576105848561;NKX6-1,2:-0.578132332839;AIRE:-0.584065779657;CEBPA,B_DDIT3:-0.585102415548;ELF1,2,4:-0.597036269613;SOX2:-0.612839422281;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.632955499711;NRF1:-0.653910318161;PAX2:-0.664896056372;PBX1:-0.673848020153;ADNP_IRX_SIX_ZHX:-0.684029070147;LHX3,4:-0.699044611243;PAX3,7:-0.704550022342;CUX2:-0.725514547948;YY1:-0.741077025435;ZNF148:-0.756089128382;LEF1_TCF7_TCF7L1,2:-0.771680350576;SOX{8,9,10}:-0.781257224167;NFY{A,B,C}:-0.784841236153;FOSL2:-0.792271932826;RUNX1..3:-0.833321869376;ELK1,4_GABP{A,B1}:-0.850603265451;TFDP1:-0.853463755435;NFE2:-0.863100483729;BACH2:-0.897694134755;POU1F1:-0.938510650942;SOX17:-0.94081802075;HOX{A5,B5}:-0.942221103665;HLF:-0.994542424114;NANOG:-1.01884352574;FOX{F1,F2,J1}:-1.02551314331;FOS_FOS{B,L1}_JUN{B,D}:-1.06203337728;NFIL3:-1.1261265068;RORA:-1.12984084546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14663023871;VSX1,2:-1.16533651392;PRRX1,2:-1.18002731507;STAT5{A,B}:-1.18384562572;PDX1:-1.19364803024;bHLH_family:-1.19456751175;FOXA2:-1.19830930903;E2F1..5:-1.19872207336;PAX4:-1.22831368721;NFE2L2:-1.26981045126;FOX{I1,J2}:-1.29123831713;OCT4_SOX2{dimer}:-1.31492179134;PAX8:-1.31614304151;NANOG{mouse}:-1.49754896681;NKX3-1:-1.52856218367;PPARG:-1.68821838807;MYB:-1.70111200273;EN1,2:-2.03611746887;CRX:-2.46368753388 | |top_motifs=IKZF2:2.71221779345;AR:2.19389563592;ARID5B:2.1332228025;XBP1:2.07034776557;SRF:1.95099126509;SNAI1..3:1.79640076735;FOXP1:1.78431947391;GATA4:1.74069268381;TLX2:1.68787845712;MYFfamily:1.64261360365;FOXO1,3,4:1.64260588355;ESR1:1.54565121527;FOXN1:1.51304280043;NR3C1:1.50992471477;ATF6:1.47812615388;ZIC1..3:1.47384347733;UFEwm:1.46481507707;HMX1:1.3616476855;NR6A1:1.34098814349;TFAP2{A,C}:1.31301485989;MAZ:1.30673901003;MZF1:1.25059740223;GTF2I:1.24808222321;T:1.23866603693;FOX{D1,D2}:1.20460519341;ZEB1:1.20457570589;SOX5:1.19971045663;MED-1{core}:1.19952071028;PRDM1:1.17145711842;PITX1..3:1.13446080155;TFCP2:1.13157355335;TFAP4:1.12717272139;NFE2L1:1.11044496124;HAND1,2:1.0808290367;MYBL2:1.06182614794;PAX6:1.06001297763;FOXL1:1.04770069;GFI1B:1.00859478381;CDC5L:1.00192277697;SPZ1:0.989026960969;HIC1:0.986574564554;RREB1:0.975511308269;SP1:0.970029492143;MTF1:0.891339997968;ZBTB6:0.887612483911;HBP1_HMGB_SSRP1_UBTF:0.856654578035;TLX1..3_NFIC{dimer}:0.848322669469;PATZ1:0.819776037917;NR5A1,2:0.813161803131;MYOD1:0.804237647947;TFAP2B:0.803886922902;TOPORS:0.789338437415;HOX{A4,D4}:0.786371607244;TEAD1:0.755782934832;SMAD1..7,9:0.75441788274;POU2F1..3:0.738468527412;BPTF:0.732562524281;HNF1A:0.704029167301;POU3F1..4:0.660860070925;FOXQ1:0.658889640962;RFX2..5_RFXANK_RFXAP:0.656735083156;GZF1:0.61816087573;GATA6:0.618128933664;MTE{core}:0.589290514515;PAX5:0.575342417946;DBP:0.537901054088;TBP:0.529234126967;XCPE1{core}:0.517219848308;NKX3-2:0.514436436992;EGR1..3:0.483553419843;ATF4:0.467461228559;KLF4:0.463454458205;NHLH1,2:0.462143662182;ZNF423:0.443201773022;ONECUT1,2:0.43438814432;HMGA1,2:0.413181385497;POU6F1:0.40460106893;EVI1:0.388246210134;GCM1,2:0.36108485357;HOXA9_MEIS1:0.355862688938;FOXP3:0.354107790284;NKX2-2,8:0.326269032438;RXR{A,B,G}:0.325071798804;TP53:0.266936359137;HOX{A6,A7,B6,B7}:0.253486046532;HSF1,2:0.213417239901;NFATC1..3:0.208343579647;STAT2,4,6:0.200138012456;EBF1:0.191566796775;NR1H4:0.183251712406;ZFP161:0.183240473778;NFIX:0.182906280852;RXRA_VDR{dimer}:0.1545005974;EP300:0.151229416838;LMO2:0.141161140333;FOXM1:0.133203925189;MEF2{A,B,C,D}:0.133050189121;RFX1:0.0986639597587;REST:0.0967214893495;RBPJ:0.09589189129;MAFB:0.0834030147586;BREu{core}:0.0586605098619;ATF5_CREB3:0.0523593962494;HES1:0.0284153050979;GTF2A1,2:0.0260658286161;ZBTB16:0.00719643281994;TBX4,5:-0.00612274193401;POU5F1:-0.0193129131643;ESRRA:-0.0301191139945;STAT1,3:-0.0333140373915;DMAP1_NCOR{1,2}_SMARC:-0.0670960584433;TEF:-0.103143127238;SREBF1,2:-0.104894558456;TGIF1:-0.109649952579;CREB1:-0.128244730337;ZNF238:-0.128343511151;TAL1_TCF{3,4,12}:-0.169415137936;AHR_ARNT_ARNT2:-0.18882913605;HNF4A_NR2F1,2:-0.189593836473;IRF7:-0.192523788543;ZNF384:-0.228869437383;SPI1:-0.231580967854;ETS1,2:-0.269568423026;CDX1,2,4:-0.303808854068;ALX4:-0.30578890989;IRF1,2:-0.327515040829;FOXD3:-0.36693380075;GLI1..3:-0.373167511251;ZNF143:-0.380719828096;HIF1A:-0.410395071614;PAX1,9:-0.455229690769;SPIB:-0.458396311067;IKZF1:-0.4603245559;NKX2-1,4:-0.464294779209;NFKB1_REL_RELA:-0.485761500363;GFI1:-0.52632354561;ATF2:-0.529592789973;ALX1:-0.545704613709;JUN:-0.57413591459;NKX2-3_NKX2-5:-0.576105848561;NKX6-1,2:-0.578132332839;AIRE:-0.584065779657;CEBPA,B_DDIT3:-0.585102415548;ELF1,2,4:-0.597036269613;SOX2:-0.612839422281;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.632955499711;NRF1:-0.653910318161;PAX2:-0.664896056372;PBX1:-0.673848020153;ADNP_IRX_SIX_ZHX:-0.684029070147;LHX3,4:-0.699044611243;PAX3,7:-0.704550022342;CUX2:-0.725514547948;YY1:-0.741077025435;ZNF148:-0.756089128382;LEF1_TCF7_TCF7L1,2:-0.771680350576;SOX{8,9,10}:-0.781257224167;NFY{A,B,C}:-0.784841236153;FOSL2:-0.792271932826;RUNX1..3:-0.833321869376;ELK1,4_GABP{A,B1}:-0.850603265451;TFDP1:-0.853463755435;NFE2:-0.863100483729;BACH2:-0.897694134755;POU1F1:-0.938510650942;SOX17:-0.94081802075;HOX{A5,B5}:-0.942221103665;HLF:-0.994542424114;NANOG:-1.01884352574;FOX{F1,F2,J1}:-1.02551314331;FOS_FOS{B,L1}_JUN{B,D}:-1.06203337728;NFIL3:-1.1261265068;RORA:-1.12984084546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14663023871;VSX1,2:-1.16533651392;PRRX1,2:-1.18002731507;STAT5{A,B}:-1.18384562572;PDX1:-1.19364803024;bHLH_family:-1.19456751175;FOXA2:-1.19830930903;E2F1..5:-1.19872207336;PAX4:-1.22831368721;NFE2L2:-1.26981045126;FOX{I1,J2}:-1.29123831713;OCT4_SOX2{dimer}:-1.31492179134;PAX8:-1.31614304151;NANOG{mouse}:-1.49754896681;NKX3-1:-1.52856218367;PPARG:-1.68821838807;MYB:-1.70111200273;EN1,2:-2.03611746887;CRX:-2.46368753388 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10201-103F3;search_select_hide=table117:FF:10201-103F3 | |||
}} | }} | ||
Latest revision as of 13:55, 3 June 2020
| Name: | seminal vesicle, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12851 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12851
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12851
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.25 |
| 10 | 10 | 0.368 |
| 100 | 100 | 0.508 |
| 101 | 101 | 0.694 |
| 102 | 102 | 0.934 |
| 103 | 103 | 0.5 |
| 104 | 104 | 0.688 |
| 105 | 105 | 0.0556 |
| 106 | 106 | 0.621 |
| 107 | 107 | 0.415 |
| 108 | 108 | 0.337 |
| 109 | 109 | 0.023 |
| 11 | 11 | 0.127 |
| 110 | 110 | 0.0262 |
| 111 | 111 | 0.517 |
| 112 | 112 | 0.314 |
| 113 | 113 | 0.367 |
| 114 | 114 | 0.969 |
| 115 | 115 | 0.39 |
| 116 | 116 | 0.446 |
| 117 | 117 | 0.103 |
| 118 | 118 | 0.608 |
| 119 | 119 | 0.248 |
| 12 | 12 | 0.364 |
| 120 | 120 | 0.0329 |
| 121 | 121 | 0.831 |
| 122 | 122 | 0.852 |
| 123 | 123 | 0.395 |
| 124 | 124 | 0.184 |
| 125 | 125 | 0.696 |
| 126 | 126 | 0.844 |
| 127 | 127 | 0.207 |
| 128 | 128 | 0.183 |
| 129 | 129 | 0.832 |
| 13 | 13 | 0.223 |
| 130 | 130 | 0.027 |
| 131 | 131 | 0.678 |
| 132 | 132 | 0.00839 |
| 133 | 133 | 0.155 |
| 134 | 134 | 0.837 |
| 135 | 135 | 0.482 |
| 136 | 136 | 0.873 |
| 137 | 137 | 0.176 |
| 138 | 138 | 0.406 |
| 139 | 139 | 0.602 |
| 14 | 14 | 0.932 |
| 140 | 140 | 0.935 |
| 141 | 141 | 0.796 |
| 142 | 142 | 0.601 |
| 143 | 143 | 0.247 |
| 144 | 144 | 0.528 |
| 145 | 145 | 0.981 |
| 146 | 146 | 0.409 |
| 147 | 147 | 0.665 |
| 148 | 148 | 0.75 |
| 149 | 149 | 0.887 |
| 15 | 15 | 0.0658 |
| 150 | 150 | 0.798 |
| 151 | 151 | 0.816 |
| 152 | 152 | 0.895 |
| 153 | 153 | 0.631 |
| 154 | 154 | 0.764 |
| 155 | 155 | 0.707 |
| 156 | 156 | 0.124 |
| 157 | 157 | 0.29 |
| 158 | 158 | 0.892 |
| 159 | 159 | 0.0879 |
| 16 | 16 | 0.979 |
| 160 | 160 | 0.459 |
| 161 | 161 | 0.575 |
| 162 | 162 | 0.417 |
| 163 | 163 | 0.703 |
| 164 | 164 | 0.109 |
| 165 | 165 | 0.845 |
| 166 | 166 | 0.251 |
| 167 | 167 | 1 |
| 168 | 168 | 0.417 |
| 169 | 169 | 0.26 |
| 17 | 17 | 0.888 |
| 18 | 18 | 0.0444 |
| 19 | 19 | 0.115 |
| 2 | 2 | 0.00904 |
| 20 | 20 | 0.149 |
| 21 | 21 | 0.597 |
| 22 | 22 | 0.891 |
| 23 | 23 | 0.737 |
| 24 | 24 | 0.272 |
| 25 | 25 | 0.141 |
| 26 | 26 | 0.379 |
| 27 | 27 | 0.988 |
| 28 | 28 | 0.717 |
| 29 | 29 | 0.0663 |
| 3 | 3 | 0.174 |
| 30 | 30 | 0.112 |
| 31 | 31 | 0.744 |
| 32 | 32 | 0.0767 |
| 33 | 33 | 0.13 |
| 34 | 34 | 0.986 |
| 35 | 35 | 0.792 |
| 36 | 36 | 0.00832 |
| 37 | 37 | 0.378 |
| 38 | 38 | 0.744 |
| 39 | 39 | 0.319 |
| 4 | 4 | 0.126 |
| 40 | 40 | 0.0183 |
| 41 | 41 | 0.00232 |
| 42 | 42 | 0.0586 |
| 43 | 43 | 0.338 |
| 44 | 44 | 0.961 |
| 45 | 45 | 0.657 |
| 46 | 46 | 0.144 |
| 47 | 47 | 0.242 |
| 48 | 48 | 0.365 |
| 49 | 49 | 0.252 |
| 5 | 5 | 0.214 |
| 50 | 50 | 0.431 |
| 51 | 51 | 0.287 |
| 52 | 52 | 0.0559 |
| 53 | 53 | 0.473 |
| 54 | 54 | 0.541 |
| 55 | 55 | 0.382 |
| 56 | 56 | 0.841 |
| 57 | 57 | 0.747 |
| 58 | 58 | 0.894 |
| 59 | 59 | 0.548 |
| 6 | 6 | 0.493 |
| 60 | 60 | 0.943 |
| 61 | 61 | 0.558 |
| 62 | 62 | 0.491 |
| 63 | 63 | 0.998 |
| 64 | 64 | 0.358 |
| 65 | 65 | 0.803 |
| 66 | 66 | 0.0131 |
| 67 | 67 | 0.609 |
| 68 | 68 | 0.869 |
| 69 | 69 | 0.561 |
| 7 | 7 | 0.109 |
| 70 | 70 | 0.727 |
| 71 | 71 | 0.551 |
| 72 | 72 | 0.31 |
| 73 | 73 | 0.0679 |
| 74 | 74 | 0.383 |
| 75 | 75 | 0.0975 |
| 76 | 76 | 0.12 |
| 77 | 77 | 0.121 |
| 78 | 78 | 0.842 |
| 79 | 79 | 0.773 |
| 8 | 8 | 0.975 |
| 80 | 80 | 0.0136 |
| 81 | 81 | 0.859 |
| 82 | 82 | 0.531 |
| 83 | 83 | 0.972 |
| 84 | 84 | 0.934 |
| 85 | 85 | 0.689 |
| 86 | 86 | 0.798 |
| 87 | 87 | 0.12 |
| 88 | 88 | 0.94 |
| 89 | 89 | 0.458 |
| 9 | 9 | 0.485 |
| 90 | 90 | 0.865 |
| 91 | 91 | 0.407 |
| 92 | 92 | 0.391 |
| 93 | 93 | 0.0605 |
| 94 | 94 | 0.0946 |
| 95 | 95 | 1.67385e-5 |
| 96 | 96 | 0.302 |
| 97 | 97 | 0.513 |
| 98 | 98 | 0.541 |
| 99 | 99 | 0.489 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12851
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000998 (seminal vesicle)
0000991 (gonad)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0006868 (seminal fluid secreting gland)
0005904 (duct of male reproductive system)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0002530 (gland)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010201 (human seminal vesicle - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0005754 (rostral part of nephrogenic cord)
UBERON:0007687 (kidney field)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)
