FF:11212-116A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004880 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004880 | ||
|accession_numbers=CAGE;DRX008513;DRR009385;DRZ000810;DRZ002195;DRZ012160;DRZ013545 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037253;DRR041619;DRZ007261 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.16!SOX17;;chr11:34642612..34642646,+!p1@EHF!1.58!37.45!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.53!163.71!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.18!14.27!HOXC10;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.54!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!17.12!PRDM8;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.96!FOXC2;;chr6:34204921..34204939,+!p3@HMGA1!1.11!352.39!HMGA1;;chr12:54378923..54378966,+!p1@HOXC10!1.07!10.70!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.99!PITX2;;chr1:151032860..151032918,+!p1@MLLT11!1.03!115.92!MLLT11;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.63!MAFK;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.68!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.02!13.91!HOXB7;;chr18:19749386..19749404,+!p2@GATA6!1.01!13.20!GATA6;;chr18:19749541..19749557,+!p1@GATA6!1.00!28.89!GATA6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.00!8.92!HOXC5;;chr9:35732647..35732678,+!p2@CREB3!0.99!50.29!CREB3;;chr7:27224842..27224872,-!p1@HOXA11!0.98!8.56!HOXA11;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.06!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!0.96!8.20!HAND2;;chr9:35732514..35732530,+!p5@CREB3!0.94!11.06!CREB3;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.41!C11orf9;;chr1:151032922..151032951,+!p2@MLLT11!0.93!12.84!MLLT11;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.31!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.48!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.91!70.26!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!0.91!7.13!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.13!HOXC9;;chr5:72744594..72744609,-!p1@FOXD1!0.90!33.53!FOXD1;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.13!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.75!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.32!DRAP1;;chr1:8938709..8938720,-!p3@ENO1!0.84!302.81!ENO1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.83!77.04!ZC3H12A;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.68!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.76!POU2F2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.71!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.71!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!0.83!5.71!HOXB6;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.49!HOXB7;;chr12:66218923..66218934,+!p14@HMGA2!0.80!5.35!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.35!TCF21;;chr17:59477275..59477286,+!p3@TBX2!0.79!7.13!TBX2;;chr9:35732592..35732640,+!p1@CREB3!0.78!72.05!CREB3;;chr12:124873357..124873401,-!p1@NCOR2!0.78!63.13!NCOR2;;chr12:54402790..54402805,+!p2@HOXC8!0.78!4.99!HOXC8;;chr7:27224795..27224840,-!p2@HOXA11!0.78!4.99!HOXA11;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.79!PPP1R13L;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.62!HHEX;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.64!HOXA9;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.64!KDM5D;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.64!FOXC2;;chr3:25469724..25469773,+!p1@RARB!0.74!6.78!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!352.03!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.73!130.54!FOSL1;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.99!SMAD3;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:34642656..34642667,+!p2@EHF!0.72!4.28!EHF;;chr12:54366975..54367001,+!p1@HOXC11!0.72!4.28!HOXC11;;chr20:42543441..42543497,+!p1@TOX2!0.71!20.69!TOX2;;chr12:26277956..26277980,-!p1@BHLHE41!0.71!16.41!BHLHE41;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.92!PAWR;;chr2:176969228..176969260,+!p1@HOXD11!0.69!3.92!HOXD11;;chr8:145159846..145159889,+!p6@MAF1!0.68!5.71!MAF1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.99!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.35!HMGA1;;chr1:170633262..170633285,+!p3@PRRX1!0.67!4.28!PRRX1;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.57!SMARCD3;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.57!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.66!3.57!TBX20;;chr15:67458491..67458505,+!p18@SMAD3!0.66!3.57!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.18!DRAP1;;chr2:200322654..200322707,-!p2@SATB2!0.65!5.35!SATB2;;chr2:192015701..192015743,-!p1@STAT4!0.65!4.99!STAT4;;chr22:38598086..38598105,+!p1@MAFF!0.64!41.73!MAFF;;chr12:80085061..80085119,-!p6@PAWR!0.64!5.71!PAWR;;chr5:134369905..134369972,-!p1@PITX1!0.63!5.35!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.62!426.94!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!0.62!11.77!TWIST2;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.63!ARNTL2;;chr12:54379029..54379057,+!p2@HOXC10!0.62!3.21!HOXC10;;chr11:65686952..65686975,+!p5@DRAP1!0.61!19.97!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.61!5.71!TWIST2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.92!TBX18;;chr1:8938736..8938756,-!p1@ENO1!0.60!3984.73!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.60!248.60!ENO1;;chr20:42543506..42543549,+!p2@TOX2!0.60!8.20!TOX2;;chr4:103423079..103423112,+!p4@NFKB1!0.59!2.85!NFKB1;;chr4:174451370..174451387,-!p1@HAND2!0.59!2.85!HAND2;;chr18:19749353..19749367,+!p4@GATA6!0.59!2.85!GATA6;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.85!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.85!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.85!HOXC5;;chr12:66357214..66357233,+!p13@HMGA2!0.59!2.85!HMGA2;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.42!MLLT11;;chr12:27485889..27485900,+!p4@ARNTL2!0.58!3.57!ARNTL2;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.21!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.57!6.42!VAX2;;chr1:151032739..151032748,+!p6@MLLT11!0.57!3.57!MLLT11;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.69!AEBP1;;chr21:30671690..30671762,+!p2@BACH1!0.55!10.34!BACH1;;chr19:45260775..45260838,+!p5@BCL3!0.55!3.57!BCL3;;chr11:65686776..65686787,+!p9@DRAP1!0.55!3.21!DRAP1;;chr5:72744562..72744573,-!p3@FOXD1!0.54!3.21!FOXD1;;chr6:43140095..43140145,+!p5@SRF!0.54!3.21!SRF;;chr7:27170359..27170381,-!p1@HOXA4!0.54!2.50!HOXA4;;chr7:27205136..27205164,-!p1@HOXA9!0.54!2.50!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.54!2.50!SOX17;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.50!CREB3L1;;chr12:54379136..54379150,+!p4@HOXC5!0.54!2.50!HOXC5;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.50!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.54!2.50!RARB;;chr17:46687935..46687950,-!p3@HOXB7!0.54!2.50!HOXB7;;chr15:83953397..83953425,-!p1@BNC1!0.53!2.85!BNC1;;chr3:178789522..178789564,-!p2@ZMAT3!0.52!21.76!ZMAT3;;chr12:125002827..125002855,-!p5@NCOR2!0.52!3.57!NCOR2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.85!FOXD1;;chr11:65687243..65687276,+!p8@DRAP1!0.50!3.21!DRAP1;;chr19:9732460..9732472,-!p2@ZNF561!0.50!2.14!ZNF561;;chr20:30433396..30433414,-!p1@FOXS1!0.50!2.14!FOXS1;;chr15:67458861..67458879,+!p17@SMAD3!0.50!2.14!SMAD3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.14!FOXC2;;chrY:2803415..2803468,+!p1@ZFY!0.50!2.14!ZFY;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.03!TAX1BP3;;chr19:56152332..56152347,+!p4@ZNF580!0.49!5.71!ZNF580;;chr11:65686855..65686946,+!p1@DRAP1!0.48!207.23!DRAP1;;chr17:79885537..79885554,-!p2@MAFG!0.48!4.64!MAFG;;chr15:96869255..96869291,+!p6@NR2F2!0.48!4.28!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.57!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.48!2.85!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.48!2.85!NFATC2;;chr17:41623259..41623278,-!p7@ETV4!0.48!2.50!ETV4;;chr1:8934931..8934947,-!p4@ENO1!0.47!8.20!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.47!6.78!OSR1;;chr2:145275162..145275202,-!p2@ZEB2!0.46!14.98!ZEB2;;chr12:125002861..125002894,-!p7@NCOR2!0.46!3.21!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.45!7.85!BCL3;;chr8:106330656..106330684,+!p1@ZFPM2!0.45!6.06!ZFPM2;;chr18:19749517..19749531,+!p3@GATA6!0.45!3.92!GATA6;;chr1:221052700..221052730,+!p5@HLX!0.45!3.21!HLX;;chr11:65687882..65687902,+!p10@DRAP1!0.45!2.85!DRAP1;;chr12:77459306..77459365,-!p1@E2F7!0.44!30.67!E2F7;;chr12:27485823..27485868,+!p2@ARNTL2!0.44!9.63!ARNTL2;;chr12:57504975..57505019,-!p2@STAT6!0.44!9.63!STAT6;;chr17:38498594..38498661,+!p2@RARA!0.44!7.85!RARA;;chr16:29819446..29819471,+!p9@MAZ!0.44!6.78!MAZ;;chr11:65430554..65430579,-!p3@RELA!0.44!5.71!RELA;;chr11:65687222..65687240,+!p7@DRAP1!0.44!2.50!DRAP1;;chr3:39195139..39195150,-!p3@CSRNP1!0.44!2.50!CSRNP1;;chr2:5832508..5832524,+!p1@SOX11!0.44!1.78!SOX11;;chr3:71294304..71294332,-!p35@FOXP1!0.44!1.78!FOXP1;;chr11:46333934..46333963,+!p5@CREB3L1!0.44!1.78!CREB3L1;;chr12:54366949..54366973,+!p3@HOXC11!0.44!1.78!HOXC11;;chr12:54378864..54378884,+!p6@HOXC10!0.44!1.78!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.44!1.78!HOXC9;;chr15:67418177..67418204,+!p9@SMAD3!0.44!1.78!SMAD3;;chr15:67458836..67458859,+!p22@SMAD3!0.44!1.78!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.44!1.78!FOXL1;;chr1:170633058..170633084,+!p5@PRRX1!0.44!1.78!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.44!1.78!PURA;;chr7:1577952..1577963,+!p8@MAFK!0.44!1.78!MAFK;;chr8:40755333..40755352,-!p1@ZMAT4!0.44!1.78!ZMAT4;;chr3:185826764..185826803,-!p2@ETV5!0.43!8.56!ETV5;;chr5:321810..321877,+!p1@AHRR!0.43!7.13!AHRR;;chr17:41623009..41623053,-!p4@ETV4!0.43!3.21!ETV4;;chr5:174151553..174151610,+!p1@MSX2!0.42!3.21!MSX2;;chr12:124873852..124873881,-!p3@NCOR2!0.41!13.55!NCOR2;;chr6:43139041..43139094,+!p3@SRF!0.41!12.48!SRF;;chr2:231280954..231280965,+!p2@SP100!0.41!3.57!SP100;;chr20:39946400..39946423,-!p3@ZHX3!0.41!3.57!ZHX3;;chr2:101436564..101436647,+!p1@NPAS2!0.40!46.37!NPAS2;;chr3:52001448..52001478,-!p2@PCBP4!0.40!31.39!PCBP4;;chr7:26191809..26191890,+!p1@NFE2L3!0.40!10.70!NFE2L3;;chr3:52001426..52001447,-!p3@PCBP4!0.40!5.71!PCBP4;;chr19:3573282..3573289,+!p5@HMG20B!0.40!2.14!HMG20B;;chr15:76629123..76629151,+!p1@ISL2!0.40!1.78!ISL2;;chr11:65686702..65686715,+!p11@DRAP1!0.40!1.78!DRAP1;;chr4:2263809..2263854,-!p1@MXD4!0.39!85.24!MXD4;;chr12:53614115..53614154,-!p1@RARG!0.39!11.41!RARG;;chr10:94449675..94449694,+!p2@HHEX!0.39!5.35!HHEX;;chr12:96588368..96588394,+!p3@ELK3!0.39!5.35!ELK3;;chr12:66218183..66218209,+!p4@HMGA2!0.39!3.57!HMGA2;;chr3:52001396..52001425,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| |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.16!SOX17;;chr11:34642612..34642646,+!p1@EHF!1.58!37.45!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.53!163.71!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.18!14.27!HOXC10;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.54!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!17.12!PRDM8;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.96!FOXC2;;chr6:34204921..34204939,+!p3@HMGA1!1.11!352.39!HMGA1;;chr12:54378923..54378966,+!p1@HOXC10!1.07!10.70!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.99!PITX2;;chr1:151032860..151032918,+!p1@MLLT11!1.03!115.92!MLLT11;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.63!MAFK;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.68!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.02!13.91!HOXB7;;chr18:19749386..19749404,+!p2@GATA6!1.01!13.20!GATA6;;chr18:19749541..19749557,+!p1@GATA6!1.00!28.89!GATA6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.00!8.92!HOXC5;;chr9:35732647..35732678,+!p2@CREB3!0.99!50.29!CREB3;;chr7:27224842..27224872,-!p1@HOXA11!0.98!8.56!HOXA11;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.06!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!0.96!8.20!HAND2;;chr9:35732514..35732530,+!p5@CREB3!0.94!11.06!CREB3;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.41!C11orf9;;chr1:151032922..151032951,+!p2@MLLT11!0.93!12.84!MLLT11;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.31!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.48!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.91!70.26!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!0.91!7.13!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.13!HOXC9;;chr5:72744594..72744609,-!p1@FOXD1!0.90!33.53!FOXD1;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.13!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.75!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.32!DRAP1;;chr1:8938709..8938720,-!p3@ENO1!0.84!302.81!ENO1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.83!77.04!ZC3H12A;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.68!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.76!POU2F2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.71!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.71!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!0.83!5.71!HOXB6;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.49!HOXB7;;chr12:66218923..66218934,+!p14@HMGA2!0.80!5.35!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.35!TCF21;;chr17:59477275..59477286,+!p3@TBX2!0.79!7.13!TBX2;;chr9:35732592..35732640,+!p1@CREB3!0.78!72.05!CREB3;;chr12:124873357..124873401,-!p1@NCOR2!0.78!63.13!NCOR2;;chr12:54402790..54402805,+!p2@HOXC8!0.78!4.99!HOXC8;;chr7:27224795..27224840,-!p2@HOXA11!0.78!4.99!HOXA11;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.79!PPP1R13L;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.62!HHEX;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.64!HOXA9;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.64!KDM5D;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.64!FOXC2;;chr3:25469724..25469773,+!p1@RARB!0.74!6.78!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!352.03!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.73!130.54!FOSL1;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.99!SMAD3;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:34642656..34642667,+!p2@EHF!0.72!4.28!EHF;;chr12:54366975..54367001,+!p1@HOXC11!0.72!4.28!HOXC11;;chr20:42543441..42543497,+!p1@TOX2!0.71!20.69!TOX2;;chr12:26277956..26277980,-!p1@BHLHE41!0.71!16.41!BHLHE41;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.92!PAWR;;chr2:176969228..176969260,+!p1@HOXD11!0.69!3.92!HOXD11;;chr8:145159846..145159889,+!p6@MAF1!0.68!5.71!MAF1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.99!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.35!HMGA1;;chr1:170633262..170633285,+!p3@PRRX1!0.67!4.28!PRRX1;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.57!SMARCD3;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.57!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.66!3.57!TBX20;;chr15:67458491..67458505,+!p18@SMAD3!0.66!3.57!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.18!DRAP1;;chr2:200322654..200322707,-!p2@SATB2!0.65!5.35!SATB2;;chr2:192015701..192015743,-!p1@STAT4!0.65!4.99!STAT4;;chr22:38598086..38598105,+!p1@MAFF!0.64!41.73!MAFF;;chr12:80085061..80085119,-!p6@PAWR!0.64!5.71!PAWR;;chr5:134369905..134369972,-!p1@PITX1!0.63!5.35!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.62!426.94!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!0.62!11.77!TWIST2;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.63!ARNTL2;;chr12:54379029..54379057,+!p2@HOXC10!0.62!3.21!HOXC10;;chr11:65686952..65686975,+!p5@DRAP1!0.61!19.97!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.61!5.71!TWIST2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.92!TBX18;;chr1:8938736..8938756,-!p1@ENO1!0.60!3984.73!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.60!248.60!ENO1;;chr20:42543506..42543549,+!p2@TOX2!0.60!8.20!TOX2;;chr4:103423079..103423112,+!p4@NFKB1!0.59!2.85!NFKB1;;chr4:174451370..174451387,-!p1@HAND2!0.59!2.85!HAND2;;chr18:19749353..19749367,+!p4@GATA6!0.59!2.85!GATA6;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.85!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.85!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.85!HOXC5;;chr12:66357214..66357233,+!p13@HMGA2!0.59!2.85!HMGA2;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.42!MLLT11;;chr12:27485889..27485900,+!p4@ARNTL2!0.58!3.57!ARNTL2;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.21!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.57!6.42!VAX2;;chr1:151032739..151032748,+!p6@MLLT11!0.57!3.57!MLLT11;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.69!AEBP1;;chr21:30671690..30671762,+!p2@BACH1!0.55!10.34!BACH1;;chr19:45260775..45260838,+!p5@BCL3!0.55!3.57!BCL3;;chr11:65686776..65686787,+!p9@DRAP1!0.55!3.21!DRAP1;;chr5:72744562..72744573,-!p3@FOXD1!0.54!3.21!FOXD1;;chr6:43140095..43140145,+!p5@SRF!0.54!3.21!SRF;;chr7:27170359..27170381,-!p1@HOXA4!0.54!2.50!HOXA4;;chr7:27205136..27205164,-!p1@HOXA9!0.54!2.50!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.54!2.50!SOX17;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.50!CREB3L1;;chr12:54379136..54379150,+!p4@HOXC5!0.54!2.50!HOXC5;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.50!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.54!2.50!RARB;;chr17:46687935..46687950,-!p3@HOXB7!0.54!2.50!HOXB7;;chr15:83953397..83953425,-!p1@BNC1!0.53!2.85!BNC1;;chr3:178789522..178789564,-!p2@ZMAT3!0.52!21.76!ZMAT3;;chr12:125002827..125002855,-!p5@NCOR2!0.52!3.57!NCOR2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.85!FOXD1;;chr11:65687243..65687276,+!p8@DRAP1!0.50!3.21!DRAP1;;chr19:9732460..9732472,-!p2@ZNF561!0.50!2.14!ZNF561;;chr20:30433396..30433414,-!p1@FOXS1!0.50!2.14!FOXS1;;chr15:67458861..67458879,+!p17@SMAD3!0.50!2.14!SMAD3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.14!FOXC2;;chrY:2803415..2803468,+!p1@ZFY!0.50!2.14!ZFY;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.03!TAX1BP3;;chr19:56152332..56152347,+!p4@ZNF580!0.49!5.71!ZNF580;;chr11:65686855..65686946,+!p1@DRAP1!0.48!207.23!DRAP1;;chr17:79885537..79885554,-!p2@MAFG!0.48!4.64!MAFG;;chr15:96869255..96869291,+!p6@NR2F2!0.48!4.28!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.57!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.48!2.85!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.48!2.85!NFATC2;;chr17:41623259..41623278,-!p7@ETV4!0.48!2.50!ETV4;;chr1:8934931..8934947,-!p4@ENO1!0.47!8.20!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.47!6.78!OSR1;;chr2:145275162..145275202,-!p2@ZEB2!0.46!14.98!ZEB2;;chr12:125002861..125002894,-!p7@NCOR2!0.46!3.21!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.45!7.85!BCL3;;chr8:106330656..106330684,+!p1@ZFPM2!0.45!6.06!ZFPM2;;chr18:19749517..19749531,+!p3@GATA6!0.45!3.92!GATA6;;chr1:221052700..221052730,+!p5@HLX!0.45!3.21!HLX;;chr11:65687882..65687902,+!p10@DRAP1!0.45!2.85!DRAP1;;chr12:77459306..77459365,-!p1@E2F7!0.44!30.67!E2F7;;chr12:27485823..27485868,+!p2@ARNTL2!0.44!9.63!ARNTL2;;chr12:57504975..57505019,-!p2@STAT6!0.44!9.63!STAT6;;chr17:38498594..38498661,+!p2@RARA!0.44!7.85!RARA;;chr16:29819446..29819471,+!p9@MAZ!0.44!6.78!MAZ;;chr11:65430554..65430579,-!p3@RELA!0.44!5.71!RELA;;chr11:65687222..65687240,+!p7@DRAP1!0.44!2.50!DRAP1;;chr3:39195139..39195150,-!p3@CSRNP1!0.44!2.50!CSRNP1;;chr2:5832508..5832524,+!p1@SOX11!0.44!1.78!SOX11;;chr3:71294304..71294332,-!p35@FOXP1!0.44!1.78!FOXP1;;chr11:46333934..46333963,+!p5@CREB3L1!0.44!1.78!CREB3L1;;chr12:54366949..54366973,+!p3@HOXC11!0.44!1.78!HOXC11;;chr12:54378864..54378884,+!p6@HOXC10!0.44!1.78!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.44!1.78!HOXC9;;chr15:67418177..67418204,+!p9@SMAD3!0.44!1.78!SMAD3;;chr15:67458836..67458859,+!p22@SMAD3!0.44!1.78!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.44!1.78!FOXL1;;chr1:170633058..170633084,+!p5@PRRX1!0.44!1.78!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.44!1.78!PURA;;chr7:1577952..1577963,+!p8@MAFK!0.44!1.78!MAFK;;chr8:40755333..40755352,-!p1@ZMAT4!0.44!1.78!ZMAT4;;chr3:185826764..185826803,-!p2@ETV5!0.43!8.56!ETV5;;chr5:321810..321877,+!p1@AHRR!0.43!7.13!AHRR;;chr17:41623009..41623053,-!p4@ETV4!0.43!3.21!ETV4;;chr5:174151553..174151610,+!p1@MSX2!0.42!3.21!MSX2;;chr12:124873852..124873881,-!p3@NCOR2!0.41!13.55!NCOR2;;chr6:43139041..43139094,+!p3@SRF!0.41!12.48!SRF;;chr2:231280954..231280965,+!p2@SP100!0.41!3.57!SP100;;chr20:39946400..39946423,-!p3@ZHX3!0.41!3.57!ZHX3;;chr2:101436564..101436647,+!p1@NPAS2!0.40!46.37!NPAS2;;chr3:52001448..52001478,-!p2@PCBP4!0.40!31.39!PCBP4;;chr7:26191809..26191890,+!p1@NFE2L3!0.40!10.70!NFE2L3;;chr3:52001426..52001447,-!p3@PCBP4!0.40!5.71!PCBP4;;chr19:3573282..3573289,+!p5@HMG20B!0.40!2.14!HMG20B;;chr15:76629123..76629151,+!p1@ISL2!0.40!1.78!ISL2;;chr11:65686702..65686715,+!p11@DRAP1!0.40!1.78!DRAP1;;chr4:2263809..2263854,-!p1@MXD4!0.39!85.24!MXD4;;chr12:53614115..53614154,-!p1@RARG!0.39!11.41!RARG;;chr10:94449675..94449694,+!p2@HHEX!0.39!5.35!HHEX;;chr12:96588368..96588394,+!p3@ELK3!0.39!5.35!ELK3;;chr12:66218183..66218209,+!p4@HMGA2!0.39!3.57!HMGA2;;chr3:52001396..52001425,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11212-116A6 | |id=FF:11212-116A6 | ||
|is_a=EFO:0002091;;FF:0000176 | |is_a=EFO:0002091;;FF:0000176 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10839 | |||
|library_id_phase_based=2:CNhs10839 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11212 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.TAGCTT.11212 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11212 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.TAGCTT.11212 | |||
|name=Smooth Muscle Cells - Umbilical artery, donor0 | |name=Smooth Muscle Cells - Umbilical artery, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10839,LSID700,release009,COMPLETED | |profile_hcage=CNhs10839,LSID700,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA252-R10n | |rna_catalog_number=CA252-R10n | ||
| Line 57: | Line 82: | ||
|rna_tube_id=116A6 | |rna_tube_id=116A6 | ||
|rna_weight_ug=25 | |rna_weight_ug=25 | ||
|rnaseq_library_id=SRhi10015.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=SRF:1.93854032219;GTF2A1,2:1.60852698921;HOX{A5,B5}:1.49998685187;PPARG:1.38399274778;TP53:1.20298452118;PAX8:1.18087853215;HIF1A:1.13309338288;NFE2L1:1.09936347606;CRX:1.05774264025;STAT5{A,B}:0.999682321495;TBX4,5:0.977400053823;ZNF148:0.904507243665;EN1,2:0.902529887525;GLI1..3:0.897989584202;HMGA1,2:0.872441888713;EBF1:0.866418035056;IKZF1:0.828642565748;HAND1,2:0.825588123557;ATF6:0.818399234007;TFAP2{A,C}:0.814497770909;TEAD1:0.809524196462;HES1:0.805478371644;MAFB:0.784568100943;GCM1,2:0.763846984663;PAX1,9:0.760141565499;POU1F1:0.739187226648;TFCP2:0.674140578206;TLX1..3_NFIC{dimer}:0.63086277881;ZNF238:0.624289628419;SOX17:0.618145055579;TBP:0.615296083681;HSF1,2:0.615091744487;POU3F1..4:0.595651827443;ADNP_IRX_SIX_ZHX:0.587307638101;TFAP4:0.571990483098;HMX1:0.568219137073;ALX4:0.553473659405;NR3C1:0.551023413042;NFE2L2:0.548326721086;NFATC1..3:0.545597831042;ONECUT1,2:0.54559245191;ZBTB6:0.539557100981;FOSL2:0.517443167742;NKX3-2:0.498825303736;NR5A1,2:0.482406404079;MYBL2:0.480138968557;KLF4:0.459381134806;BACH2:0.448841284904;GFI1B:0.448267667143;FOXL1:0.446716936241;XCPE1{core}:0.437259700972;UFEwm:0.404599081689;AR:0.361223026069;bHLH_family:0.359589046924;JUN:0.355440479737;ZIC1..3:0.350800452314;ESR1:0.342372324773;SOX{8,9,10}:0.337292083411;NKX2-2,8:0.330974121217;HLF:0.325306146384;FOS_FOS{B,L1}_JUN{B,D}:0.319308261725;FOX{I1,J2}:0.290982397487;TAL1_TCF{3,4,12}:0.285066389308;MEF2{A,B,C,D}:0.276220622254;RXR{A,B,G}:0.275176163726;REST:0.266613005523;GATA6:0.258560287425;ZNF423:0.243481388164;LEF1_TCF7_TCF7L1,2:0.220728161397;ZNF384:0.220201271268;LHX3,4:0.21721083053;GZF1:0.211979392615;SMAD1..7,9:0.200544749774;POU6F1:0.199492218815;YY1:0.198463494892;NANOG{mouse}:0.18516369117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.183452438356;TFAP2B:0.178165046124;RXRA_VDR{dimer}:0.172492950284;NFE2:0.150570940327;SOX2:0.124167547657;XBP1:0.117344096211;NR6A1:0.115468612813;EVI1:0.114224692665;PBX1:0.106008857449;HBP1_HMGB_SSRP1_UBTF:0.10477203842;ELK1,4_GABP{A,B1}:0.104737126991;GTF2I:0.0906649228281;NANOG:0.0830438057713;LMO2:0.0741231489732;MYOD1:0.0651548863146;NFKB1_REL_RELA:0.0580342189108;POU2F1..3:0.0484971086451;HNF1A:0.0447327861234;ALX1:0.0350685904103;NHLH1,2:0.0328265019641;MTE{core}:0.0240112495059;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00518669387384;PAX2:-0.0073656959996;CDC5L:-0.0221491327253;HIC1:-0.0248362573395;ETS1,2:-0.0584428213046;ZFP161:-0.0648934265973;PRDM1:-0.0668663734111;NFIX:-0.068313752467;DBP:-0.0715682095767;TEF:-0.0788453438839;FOXA2:-0.0974121104444;PATZ1:-0.149155506301;RUNX1..3:-0.156092747923;TFDP1:-0.156489197982;MAZ:-0.169577160482;DMAP1_NCOR{1,2}_SMARC:-0.177157594917;NFIL3:-0.19636989589;NKX2-3_NKX2-5:-0.204617508786;ELF1,2,4:-0.216789199235;ZNF143:-0.227841306578;MZF1:-0.239894209474;HOXA9_MEIS1:-0.246652594468;AIRE:-0.25164130803;GFI1:-0.255378024483;SPZ1:-0.258533271435;CEBPA,B_DDIT3:-0.273712441588;FOX{F1,F2,J1}:-0.28011128433;ARID5B:-0.281238821467;PAX5:-0.28201636563;MYB:-0.283726458345;STAT2,4,6:-0.286120279732;ATF2:-0.292335075235;AHR_ARNT_ARNT2:-0.301028901733;RFX1:-0.306874164965;NRF1:-0.322450330019;ATF4:-0.322727396877;TOPORS:-0.326869144161;TGIF1:-0.333961463805;ESRRA:-0.358105477882;GATA4:-0.358632684451;NKX3-1:-0.37202255643;VSX1,2:-0.395054122375;SP1:-0.403489037347;NR1H4:-0.429793474258;OCT4_SOX2{dimer}:-0.441473510126;SPI1:-0.442906172394;SPIB:-0.443426829686;PITX1..3:-0.448505721111;PAX3,7:-0.448742213753;POU5F1:-0.450553145673;PRRX1,2:-0.455571616779;HOX{A6,A7,B6,B7}:-0.455707435494;EGR1..3:-0.461439490151;ZEB1:-0.46995017518;MED-1{core}:-0.471678399924;SNAI1..3:-0.477126648154;HNF4A_NR2F1,2:-0.477811649072;EP300:-0.484222768374;RREB1:-0.485181536637;FOX{D1,D2}:-0.489396027909;FOXM1:-0.49077733456;T:-0.505881437205;HOX{A4,D4}:-0.506922872991;PAX6:-0.59386563634;MTF1:-0.603895224035;MYFfamily:-0.609027320379;RORA:-0.613993303952;CUX2:-0.619749717514;CREB1:-0.636351006189;RFX2..5_RFXANK_RFXAP:-0.637119725375;TLX2:-0.654962188173;NFY{A,B,C}:-0.655453118637;IKZF2:-0.755593994436;E2F1..5:-0.761667507766;SREBF1,2:-0.779852854813;IRF1,2:-0.783930841194;ATF5_CREB3:-0.795137434073;FOXQ1:-0.83039320793;IRF7:-0.858547665372;NKX2-1,4:-0.86464602316;SOX5:-0.943893877504;PDX1:-0.969737847589;FOXD3:-1.00636937208;FOXN1:-1.02356328789;FOXP3:-1.0406487741;CDX1,2,4:-1.06803643322;ZBTB16:-1.09086714162;FOXO1,3,4:-1.13446184156;BPTF:-1.15584672793;PAX4:-1.16137663162;NKX6-1,2:-1.28762191196;FOXP1:-1.29062508861;BREu{core}:-1.31589833861;STAT1,3:-1.37931633909;RBPJ:-1.98286879955 | |top_motifs=SRF:1.93854032219;GTF2A1,2:1.60852698921;HOX{A5,B5}:1.49998685187;PPARG:1.38399274778;TP53:1.20298452118;PAX8:1.18087853215;HIF1A:1.13309338288;NFE2L1:1.09936347606;CRX:1.05774264025;STAT5{A,B}:0.999682321495;TBX4,5:0.977400053823;ZNF148:0.904507243665;EN1,2:0.902529887525;GLI1..3:0.897989584202;HMGA1,2:0.872441888713;EBF1:0.866418035056;IKZF1:0.828642565748;HAND1,2:0.825588123557;ATF6:0.818399234007;TFAP2{A,C}:0.814497770909;TEAD1:0.809524196462;HES1:0.805478371644;MAFB:0.784568100943;GCM1,2:0.763846984663;PAX1,9:0.760141565499;POU1F1:0.739187226648;TFCP2:0.674140578206;TLX1..3_NFIC{dimer}:0.63086277881;ZNF238:0.624289628419;SOX17:0.618145055579;TBP:0.615296083681;HSF1,2:0.615091744487;POU3F1..4:0.595651827443;ADNP_IRX_SIX_ZHX:0.587307638101;TFAP4:0.571990483098;HMX1:0.568219137073;ALX4:0.553473659405;NR3C1:0.551023413042;NFE2L2:0.548326721086;NFATC1..3:0.545597831042;ONECUT1,2:0.54559245191;ZBTB6:0.539557100981;FOSL2:0.517443167742;NKX3-2:0.498825303736;NR5A1,2:0.482406404079;MYBL2:0.480138968557;KLF4:0.459381134806;BACH2:0.448841284904;GFI1B:0.448267667143;FOXL1:0.446716936241;XCPE1{core}:0.437259700972;UFEwm:0.404599081689;AR:0.361223026069;bHLH_family:0.359589046924;JUN:0.355440479737;ZIC1..3:0.350800452314;ESR1:0.342372324773;SOX{8,9,10}:0.337292083411;NKX2-2,8:0.330974121217;HLF:0.325306146384;FOS_FOS{B,L1}_JUN{B,D}:0.319308261725;FOX{I1,J2}:0.290982397487;TAL1_TCF{3,4,12}:0.285066389308;MEF2{A,B,C,D}:0.276220622254;RXR{A,B,G}:0.275176163726;REST:0.266613005523;GATA6:0.258560287425;ZNF423:0.243481388164;LEF1_TCF7_TCF7L1,2:0.220728161397;ZNF384:0.220201271268;LHX3,4:0.21721083053;GZF1:0.211979392615;SMAD1..7,9:0.200544749774;POU6F1:0.199492218815;YY1:0.198463494892;NANOG{mouse}:0.18516369117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.183452438356;TFAP2B:0.178165046124;RXRA_VDR{dimer}:0.172492950284;NFE2:0.150570940327;SOX2:0.124167547657;XBP1:0.117344096211;NR6A1:0.115468612813;EVI1:0.114224692665;PBX1:0.106008857449;HBP1_HMGB_SSRP1_UBTF:0.10477203842;ELK1,4_GABP{A,B1}:0.104737126991;GTF2I:0.0906649228281;NANOG:0.0830438057713;LMO2:0.0741231489732;MYOD1:0.0651548863146;NFKB1_REL_RELA:0.0580342189108;POU2F1..3:0.0484971086451;HNF1A:0.0447327861234;ALX1:0.0350685904103;NHLH1,2:0.0328265019641;MTE{core}:0.0240112495059;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00518669387384;PAX2:-0.0073656959996;CDC5L:-0.0221491327253;HIC1:-0.0248362573395;ETS1,2:-0.0584428213046;ZFP161:-0.0648934265973;PRDM1:-0.0668663734111;NFIX:-0.068313752467;DBP:-0.0715682095767;TEF:-0.0788453438839;FOXA2:-0.0974121104444;PATZ1:-0.149155506301;RUNX1..3:-0.156092747923;TFDP1:-0.156489197982;MAZ:-0.169577160482;DMAP1_NCOR{1,2}_SMARC:-0.177157594917;NFIL3:-0.19636989589;NKX2-3_NKX2-5:-0.204617508786;ELF1,2,4:-0.216789199235;ZNF143:-0.227841306578;MZF1:-0.239894209474;HOXA9_MEIS1:-0.246652594468;AIRE:-0.25164130803;GFI1:-0.255378024483;SPZ1:-0.258533271435;CEBPA,B_DDIT3:-0.273712441588;FOX{F1,F2,J1}:-0.28011128433;ARID5B:-0.281238821467;PAX5:-0.28201636563;MYB:-0.283726458345;STAT2,4,6:-0.286120279732;ATF2:-0.292335075235;AHR_ARNT_ARNT2:-0.301028901733;RFX1:-0.306874164965;NRF1:-0.322450330019;ATF4:-0.322727396877;TOPORS:-0.326869144161;TGIF1:-0.333961463805;ESRRA:-0.358105477882;GATA4:-0.358632684451;NKX3-1:-0.37202255643;VSX1,2:-0.395054122375;SP1:-0.403489037347;NR1H4:-0.429793474258;OCT4_SOX2{dimer}:-0.441473510126;SPI1:-0.442906172394;SPIB:-0.443426829686;PITX1..3:-0.448505721111;PAX3,7:-0.448742213753;POU5F1:-0.450553145673;PRRX1,2:-0.455571616779;HOX{A6,A7,B6,B7}:-0.455707435494;EGR1..3:-0.461439490151;ZEB1:-0.46995017518;MED-1{core}:-0.471678399924;SNAI1..3:-0.477126648154;HNF4A_NR2F1,2:-0.477811649072;EP300:-0.484222768374;RREB1:-0.485181536637;FOX{D1,D2}:-0.489396027909;FOXM1:-0.49077733456;T:-0.505881437205;HOX{A4,D4}:-0.506922872991;PAX6:-0.59386563634;MTF1:-0.603895224035;MYFfamily:-0.609027320379;RORA:-0.613993303952;CUX2:-0.619749717514;CREB1:-0.636351006189;RFX2..5_RFXANK_RFXAP:-0.637119725375;TLX2:-0.654962188173;NFY{A,B,C}:-0.655453118637;IKZF2:-0.755593994436;E2F1..5:-0.761667507766;SREBF1,2:-0.779852854813;IRF1,2:-0.783930841194;ATF5_CREB3:-0.795137434073;FOXQ1:-0.83039320793;IRF7:-0.858547665372;NKX2-1,4:-0.86464602316;SOX5:-0.943893877504;PDX1:-0.969737847589;FOXD3:-1.00636937208;FOXN1:-1.02356328789;FOXP3:-1.0406487741;CDX1,2,4:-1.06803643322;ZBTB16:-1.09086714162;FOXO1,3,4:-1.13446184156;BPTF:-1.15584672793;PAX4:-1.16137663162;NKX6-1,2:-1.28762191196;FOXP1:-1.29062508861;BREu{core}:-1.31589833861;STAT1,3:-1.37931633909;RBPJ:-1.98286879955 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11212-116A6;search_select_hide=table117:FF:11212-116A6 | |||
}} | }} | ||
Latest revision as of 16:24, 3 June 2020
| Name: | Smooth Muscle Cells - Umbilical artery, donor0 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10839 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10839
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10839
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.435 |
| 10 | 10 | 0.542 |
| 100 | 100 | 0.961 |
| 101 | 101 | 0.573 |
| 102 | 102 | 0.995 |
| 103 | 103 | 0.215 |
| 104 | 104 | 0.423 |
| 105 | 105 | 0.865 |
| 106 | 106 | 0.0175 |
| 107 | 107 | 0.0334 |
| 108 | 108 | 0.497 |
| 109 | 109 | 0.0713 |
| 11 | 11 | 0.0677 |
| 110 | 110 | 0.366 |
| 111 | 111 | 0.518 |
| 112 | 112 | 0.575 |
| 113 | 113 | 0.178 |
| 114 | 114 | 0.0765 |
| 115 | 115 | 0.824 |
| 116 | 116 | 0.207 |
| 117 | 117 | 0.413 |
| 118 | 118 | 0.818 |
| 119 | 119 | 0.16 |
| 12 | 12 | 0.886 |
| 120 | 120 | 0.07 |
| 121 | 121 | 0.558 |
| 122 | 122 | 0.392 |
| 123 | 123 | 0.0972 |
| 124 | 124 | 0.688 |
| 125 | 125 | 0.745 |
| 126 | 126 | 0.915 |
| 127 | 127 | 0.885 |
| 128 | 128 | 0.146 |
| 129 | 129 | 0.706 |
| 13 | 13 | 0.837 |
| 130 | 130 | 0.89 |
| 131 | 131 | 0.134 |
| 132 | 132 | 0.788 |
| 133 | 133 | 0.715 |
| 134 | 134 | 0.0998 |
| 135 | 135 | 0.0615 |
| 136 | 136 | 0.892 |
| 137 | 137 | 0.705 |
| 138 | 138 | 0.449 |
| 139 | 139 | 0.194 |
| 14 | 14 | 0.673 |
| 140 | 140 | 0.618 |
| 141 | 141 | 0.175 |
| 142 | 142 | 1 |
| 143 | 143 | 0.00109 |
| 144 | 144 | 0.863 |
| 145 | 145 | 0.362 |
| 146 | 146 | 0.217 |
| 147 | 147 | 0.345 |
| 148 | 148 | 0.571 |
| 149 | 149 | 0.215 |
| 15 | 15 | 0.324 |
| 150 | 150 | 0.11 |
| 151 | 151 | 0.689 |
| 152 | 152 | 0.0154 |
| 153 | 153 | 0.473 |
| 154 | 154 | 0.716 |
| 155 | 155 | 0.0953 |
| 156 | 156 | 0.852 |
| 157 | 157 | 0.403 |
| 158 | 158 | 0.124 |
| 159 | 159 | 0.457 |
| 16 | 16 | 0.119 |
| 160 | 160 | 0.1 |
| 161 | 161 | 0.742 |
| 162 | 162 | 0.323 |
| 163 | 163 | 0.564 |
| 164 | 164 | 0.231 |
| 165 | 165 | 0.425 |
| 166 | 166 | 0.822 |
| 167 | 167 | 0.704 |
| 168 | 168 | 0.327 |
| 169 | 169 | 0.0489 |
| 17 | 17 | 0.103 |
| 18 | 18 | 0.0713 |
| 19 | 19 | 0.0737 |
| 2 | 2 | 0.266 |
| 20 | 20 | 0.728 |
| 21 | 21 | 0.693 |
| 22 | 22 | 0.197 |
| 23 | 23 | 0.147 |
| 24 | 24 | 0.155 |
| 25 | 25 | 0.618 |
| 26 | 26 | 0.521 |
| 27 | 27 | 0.579 |
| 28 | 28 | 0.445 |
| 29 | 29 | 0.38 |
| 3 | 3 | 0.321 |
| 30 | 30 | 0.776 |
| 31 | 31 | 0.301 |
| 32 | 32 | 2.28569e-4 |
| 33 | 33 | 0.602 |
| 34 | 34 | 0.496 |
| 35 | 35 | 0.337 |
| 36 | 36 | 0.53 |
| 37 | 37 | 0.0308 |
| 38 | 38 | 0.796 |
| 39 | 39 | 0.376 |
| 4 | 4 | 0.389 |
| 40 | 40 | 0.134 |
| 41 | 41 | 0.3 |
| 42 | 42 | 0.616 |
| 43 | 43 | 0.324 |
| 44 | 44 | 0.539 |
| 45 | 45 | 0.332 |
| 46 | 46 | 0.148 |
| 47 | 47 | 0.241 |
| 48 | 48 | 0.308 |
| 49 | 49 | 0.413 |
| 5 | 5 | 0.482 |
| 50 | 50 | 0.473 |
| 51 | 51 | 0.937 |
| 52 | 52 | 0.51 |
| 53 | 53 | 0.354 |
| 54 | 54 | 0.612 |
| 55 | 55 | 0.531 |
| 56 | 56 | 0.333 |
| 57 | 57 | 0.416 |
| 58 | 58 | 0.816 |
| 59 | 59 | 0.0268 |
| 6 | 6 | 0.988 |
| 60 | 60 | 0.44 |
| 61 | 61 | 0.879 |
| 62 | 62 | 0.606 |
| 63 | 63 | 0.12 |
| 64 | 64 | 0.414 |
| 65 | 65 | 0.209 |
| 66 | 66 | 0.498 |
| 67 | 67 | 0.557 |
| 68 | 68 | 0.299 |
| 69 | 69 | 0.896 |
| 7 | 7 | 0.922 |
| 70 | 70 | 0.235 |
| 71 | 71 | 0.412 |
| 72 | 72 | 0.92 |
| 73 | 73 | 0.00746 |
| 74 | 74 | 0.929 |
| 75 | 75 | 0.328 |
| 76 | 76 | 0.986 |
| 77 | 77 | 0.0289 |
| 78 | 78 | 0.771 |
| 79 | 79 | 0.166 |
| 8 | 8 | 0.0458 |
| 80 | 80 | 0.357 |
| 81 | 81 | 0.443 |
| 82 | 82 | 0.265 |
| 83 | 83 | 0.581 |
| 84 | 84 | 0.648 |
| 85 | 85 | 0.157 |
| 86 | 86 | 0.454 |
| 87 | 87 | 0.0228 |
| 88 | 88 | 0.0794 |
| 89 | 89 | 0.0684 |
| 9 | 9 | 0.415 |
| 90 | 90 | 0.671 |
| 91 | 91 | 0.298 |
| 92 | 92 | 0.35 |
| 93 | 93 | 0.638 |
| 94 | 94 | 0.627 |
| 95 | 95 | 0.131 |
| 96 | 96 | 0.695 |
| 97 | 97 | 0.211 |
| 98 | 98 | 0.464 |
| 99 | 99 | 0.00826 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10839
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000176 human smooth muscle cell of umbilical artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
