FF:11322-117D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005337 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005337 | ||
|accession_numbers=CAGE;DRX008368;DRR009240;DRZ000665;DRZ002050;DRZ012015;DRZ013400 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037199;DRR041565;DRZ007207 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!1.98!94.11!MYF5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.60!38.63!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.51!84.86!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.48!107.26!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!1.46!73.36!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.40!26.92!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!1.38!23.22!HOXC10;;chr12:66218836..66218888,+!p1@HMGA2!1.32!181.85!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.26!FOXC2;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.67!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.64!HOXC10;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.53!HMGA2;;chr1:40105299..40105326,-!p1@HEYL!1.23!15.82!HEYL;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.79!TBX1;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.18!HMGA2;;chr7:27192185..27192209,-!p1@HOXA3!1.18!13.97!HOXA3;;chr11:17741111..17741124,+!p1@MYOD1!1.14!12.74!MYOD1;;chr12:66218923..66218934,+!p14@HMGA2!1.13!12.53!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.67!HMGA2;;chr17:48072574..48072597,-!p1@DLX3!1.12!12.12!DLX3;;chr7:27224795..27224840,-!p2@HOXA11!1.08!11.10!HOXA11;;chr6:34204921..34204939,+!p3@HMGA1!1.06!319.93!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.21!NFIX;;chr12:54332608..54332636,+!p1@HOXC13!1.04!10.07!HOXC13;;chr12:54366975..54367001,+!p1@HOXC11!1.04!9.86!HOXC11;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.36!PRRX1;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.53!NR2F1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.67!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.98!9.66!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.84!GLIS1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.97!8.42!HOXC5;;chr12:53614115..53614154,-!p1@RARG!0.95!43.36!RARG;;chr11:113930425..113930471,+!p1@ZBTB16!0.95!11.71!ZBTB16;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.04!PRRX1;;chr6:100912785..100912822,-!p1@SIM1!0.95!8.01!SIM1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.58!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.94!13.56!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.94!8.42!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!0.93!7.60!PAX9;;chr2:223163706..223163730,-!p1@PAX3!0.92!7.40!PAX3;;chr2:85981107..85981120,+!p3@ATOH8!0.91!7.19!ATOH8;;chr14:61116168..61116180,-!p2@SIX1!0.90!8.01!SIX1;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.99!SIX2;;chr12:54393880..54393962,+!p1@HOXC9!0.88!6.58!HOXC9;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.68!FOXQ1;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.37!TBX3;;chr11:65686732..65686756,+!p2@DRAP1!0.86!27.74!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.68!FOSL1;;chr12:54366949..54366973,+!p3@HOXC11!0.86!6.16!HOXC11;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.16!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.96!EBF3;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.96!KDM5D;;chr6:100912752..100912778,-!p2@SIM1!0.84!5.96!SIM1;;chr11:65687362..65687436,+!p3@DRAP1!0.83!28.15!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.83!19.31!AHRR;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.75!HMGA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.82!25.27!ZFHX4;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.55!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.60!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!0.81!30.00!CREB3L1;;chr3:21792585..21792625,-!p2@ZNF385D!0.81!6.16!ZNF385D;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.49!TBX3;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.34!RUNX1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.34!FOXC2;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.34!DLX2;;chr14:62162258..62162269,+!p2@HIF1A!0.79!54.66!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.78!28.56!HIF1A;;chr11:113930291..113930339,+!p2@ZBTB16!0.78!8.63!ZBTB16;;chr12:66218378..66218401,+!p6@HMGA2!0.78!8.01!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.77!13.15!EBF1;;chr12:66218443..66218461,+!p8@HMGA2!0.77!6.37!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.77!4.93!EN1;;chr4:111544219..111544240,-!p1@PITX2!0.77!4.93!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr4:111558135..111558198,-!p2@PITX2!0.76!4.73!PITX2;;chr20:39946361..39946379,-!p2@ZHX3!0.75!14.79!ZHX3;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.82!TWIST2;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.81!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.74!4.52!ATOH8;;chr12:66218420..66218439,+!p12@HMGA2!0.74!4.52!HMGA2;;chr16:86601052..86601066,+!p4@FOXC2!0.74!4.52!FOXC2;;chr11:17741254..17741282,+!p2@MYOD1!0.73!4.32!MYOD1;;chr12:54380036..54380091,+!p4@HOXC10!0.73!4.32!HOXC10;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.41!ENO1;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.60!TCF12;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.14!TBX3;;chr16:86600458..86600461,+!p3@FOXC2!0.71!4.11!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.70!6.37!ENO1;;chr5:92918860..92918871,+!p10@NR2F1!0.70!4.52!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.88!SNAI2;;chr5:92918768..92918783,+!p8@NR2F1!0.69!3.90!NR2F1;;chr1:170633058..170633084,+!p5@PRRX1!0.69!3.90!PRRX1;;chr12:543326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IS3;;chr9:35732647..35732678,+!p2@CREB3!0.28!8.84!CREB3;;chr2:28616358..28616380,+!p3@FOSL2!0.28!8.22!FOSL2;;chr3:187463179..187463201,-!p2@BCL6!0.28!6.37!BCL6;;chr19:58220517..58220583,-!p1@ZNF154!0.28!4.73!ZNF154;;chr8:116681221..116681236,-!p3@TRPS1!0.28!4.32!TRPS1;;chr20:3388579..3388619,-!p3@C20orf194!0.28!3.29!C20orf194;;chr19:37407172..37407217,-!p2@ZNF829!0.28!2.26!ZNF829;;chrX:101975619..101975641,+!p2@BHLHB9!0.28!2.26!BHLHB9;;chr12:124457725..124457736,+!p2@ZNF664!0.28!2.26!ZNF664;;chr9:94186085..94186096,-!p3@NFIL3!0.28!2.05!NFIL3;;chr15:96874216..96874236,+!p13@NR2F2!0.28!1.85!NR2F2;;chr7:104752306..104752335,+!p4@MLL5!0.28!1.64!MLL5;;chr8:57123873..57123894,-!p2@PLAG1!0.28!1.64!PLAG1;;chr19:45260775..45260838,+!p5@BCL3!0.28!1.44!BCL3;;chr19:13106383..13106423,+!p8@NFIX!0.28!1.44!NFIX;;chr11:6947720..6947812,+!p1@ZNF215!0.28!1.44!ZNF215;;chr10:8096772..8096787,+!p2@GATA3!0.28!1.23!GATA3;;chr17:46622229..46622257,-!p6@HOXB2!0.28!1.23!HOXB2;;chr17:38474489..38474548,+!p1@RARA!0.27!52.81!RARA;;chr9:35732592..35732640,+!p1@CREB3!0.27!21.99!CREB3;;chr1:61548225..61548299,+!p1@NFIA!0.27!21.37!NFIA;;chr20:39317868..39317884,-!p1@MAFB!0.27!19.52!MAFB;;chr13:41635512..41635539,-!p2@ELF1!0.27!8.84!ELF1;;chr19:58446721..58446779,-!p1@ZNF418!0.27!3.90!ZNF418;;chr1:33938236..33938267,+!p1@ZSCAN20!0.27!3.49!ZSCAN20;;chr19:37329254..37329295,-!p1@ZNF790!0.27!3.49!ZNF790;;chr1:61547781..61547809,+!p5@NFIA!0.27!2.67!NFIA;;chr1:8939265..8939367,-!p5@ENO1!0.27!2.67!ENO1;;chr8:28243813..28243839,-!p4@ZNF395!0.27!2.26!ZNF395;;chr8:72756667..72756736,-!p2@MSC!0.27!1.85!MSC;;chr5:178322893..178322931,+!p1@ZFP2!0.27!1.64!ZFP2;;chr1:61547811..61547837,+!p7@NFIA!0.27!1.64!NFIA;;chr15:96875041..96875052,+!p17@NR2F2!0.27!1.64!NR2F2;;chr14:24020938..24020988,-!p1@ZFHX2!0.27!1.64!ZFHX2;;chr13:46549688..46549712,-!p5@ZC3H13!0.27!1.44!ZC3H13;;chr19:7584815..7584829,+!p2@ZNF358!0.27!1.44!ZNF358;;chr2:28616337..28616355,+!p2@FOSL2!0.26!28.97!FOSL2;;chr9:73028332..73028385,-!p3@KLF9!0.26!4.93!KLF9;;chr4:47916613..47916640,-!p3@NFXL1!0.26!4.11!NFXL1;;chr21:36259445..36259519,-!p4@RUNX1!0.26!3.90!RUNX1;;chr3:48282536..48282586,+!p2@ZNF589!0.26!3.70!ZNF589;;chr1:211433151..211433191,+!p5@RCOR3!0.26!2.67!RCOR3;;chr22:46546494..46546525,+!p2@PPARA!0.26!2.47!PPARA;;chr1:235383681..235383700,-!p2@ARID4B!0.26!2.05!ARID4B;;chr1:35656352..35656383,-!p7@SFPQ!0.26!2.05!SFPQ;;chr6:45390002..45390023,+!p6@RUNX2!0.26!2.05!RUNX2;;chr16:73082004..73082033,-!p5@ZFHX3!0.26!1.85!ZFHX3;;chr17:46655704..46655718,-!p2@HOXB4!0.26!1.64!HOXB4;;chr22:42269885..42269899,+!p4@SREBF2!0.26!1.64!SREBF2;;chr4:87967906..87967931,+!p15@AFF1!0.26!1.44!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.26!1.44!ZNF215;;chr19:49864746..49864780,-!p2@TEAD2!0.26!1.44!TEAD2;;chr1:8926369..8926385,-!p12@ENO1!0.26!1.44!ENO1;;chr8:128747661..128747703,+!p6@MYC!0.26!1.44!MYC;;chrX:107018969..107019024,-!p6@TSC22D3!0.26!1.44!TSC22D3;;chr12:80083544..80083558,-!p13@PAWR!0.26!1.23!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.26!1.03!CREB3L1;;chr13:74707894..74707947,-!p6@KLF12!0.26!1.03!KLF12;;chr16:31454084..31454115,-!p1@ZNF843!0.26!1.03!ZNF843;;chr18:53068911..53068935,-!p4@TCF4!0.26!1.03!TCF4;;chr3:170076223..170076242,+!p6@SKIL!0.26!1.03!SKIL;;chr2:19558327..19558334,-!p2@OSR1!0.26!0.82!OSR1;;chr2:96012298..96012317,+!p6@KCNIP3!0.26!0.82!KCNIP3;;chr3:147110055..147110129,-!p1@ZIC4!0.26!0.82!ZIC4;;chr3:169381183..169381205,-!p4@MECOM!0.26!0.82!MECOM;;chr4:57522674..57522699,-!p5@HOPX!0.26!0.82!HOPX;;chr16:86612149..86612161,+!p2@FOXL1!0.26!0.82!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.26!0.82!HOXB2;;chr17:59477403..59477414,+!p4@TBX2!0.26!0.82!TBX2;;chr19:13135914..13135942,+!p19@NFIX!0.26!0.82!NFIX;;chr19:13135989..13136023,+!p18@NFIX!0.26!0.82!NFIX;;chr19:31840699..31840720,-!p7@TSHZ3!0.26!0.82!TSHZ3;;chr9:22447422..22447483,+!p1@DMRTA1!0.26!0.82!DMRTA1;;chrX:30327504..30327509,-!p1@NR0B1!0.26!0.82!NR0B1;;chr9:73029044..73029056,-!p10@KLF9!0.26!0.82!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.26!0.82!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.26!0.82!ZEB1;;chr10:3824206..3824226,-!p10@KLF6!0.26!0.82!KLF6;;chr11:113930355..113930366,+!p5@ZBTB16!0.26!0.82!ZBTB16;;chr11:128392265..128392267,-!p10@ETS1!0.26!0.82!ETS1;;chr11:65688877..65688891,+!p13@DRAP1!0.26!0.82!DRAP1;;chr12:53625846..53625861,-!p6@RARG!0.26!0.82!RARG;;chr12:54447637..54447659,+!p4@HOXC4!0.26!0.82!HOXC4;;chr12:66218413..66218418,+!p17@HMGA2!0.26!0.82!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.26!0.82!PAWR;;chr14:35872542..35872553,-!p10@NFKBIA!0.26!0.82!NFKBIA;;chr14:62214151..62214164,+!p11@HIF1A!0.26!0.82!HIF1A;;chr14:74256787..74256858,-!p6@C14orf43!0.26!0.82!C14orf43;;chr5:133477905..133477956,+!p5@TCF7!0.26!0.82!TCF7;;chr5:92920517..92920532,+!p15@NR2F1!0.26!0.82!NR2F1;;chr6:155635647..155635658,-!p2@TFB1M!0.26!0.82!TFB1M;;chr6:34210478..34210481,+!p8@HMGA1!0.26!0.82!HMGA1;;chr19:38714830..38714845,-!p5@DPF1!0.26!0.82!DPF1;;chr1:119530636..119530653,-!p2@TBX15!0.26!0.82!TBX15;;chr1:170632051..170632081,+!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| |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!1.98!94.11!MYF5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.60!38.63!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.51!84.86!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.48!107.26!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!1.46!73.36!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.40!26.92!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!1.38!23.22!HOXC10;;chr12:66218836..66218888,+!p1@HMGA2!1.32!181.85!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.26!FOXC2;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.67!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.64!HOXC10;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.53!HMGA2;;chr1:40105299..40105326,-!p1@HEYL!1.23!15.82!HEYL;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.79!TBX1;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.18!HMGA2;;chr7:27192185..27192209,-!p1@HOXA3!1.18!13.97!HOXA3;;chr11:17741111..17741124,+!p1@MYOD1!1.14!12.74!MYOD1;;chr12:66218923..66218934,+!p14@HMGA2!1.13!12.53!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.67!HMGA2;;chr17:48072574..48072597,-!p1@DLX3!1.12!12.12!DLX3;;chr7:27224795..27224840,-!p2@HOXA11!1.08!11.10!HOXA11;;chr6:34204921..34204939,+!p3@HMGA1!1.06!319.93!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.21!NFIX;;chr12:54332608..54332636,+!p1@HOXC13!1.04!10.07!HOXC13;;chr12:54366975..54367001,+!p1@HOXC11!1.04!9.86!HOXC11;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.36!PRRX1;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.53!NR2F1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.67!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.98!9.66!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.84!GLIS1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.97!8.42!HOXC5;;chr12:53614115..53614154,-!p1@RARG!0.95!43.36!RARG;;chr11:113930425..113930471,+!p1@ZBTB16!0.95!11.71!ZBTB16;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.04!PRRX1;;chr6:100912785..100912822,-!p1@SIM1!0.95!8.01!SIM1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.58!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.94!13.56!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.94!8.42!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!0.93!7.60!PAX9;;chr2:223163706..223163730,-!p1@PAX3!0.92!7.40!PAX3;;chr2:85981107..85981120,+!p3@ATOH8!0.91!7.19!ATOH8;;chr14:61116168..61116180,-!p2@SIX1!0.90!8.01!SIX1;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.99!SIX2;;chr12:54393880..54393962,+!p1@HOXC9!0.88!6.58!HOXC9;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.68!FOXQ1;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.37!TBX3;;chr11:65686732..65686756,+!p2@DRAP1!0.86!27.74!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.68!FOSL1;;chr12:54366949..54366973,+!p3@HOXC11!0.86!6.16!HOXC11;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.16!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.96!EBF3;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.96!KDM5D;;chr6:100912752..100912778,-!p2@SIM1!0.84!5.96!SIM1;;chr11:65687362..65687436,+!p3@DRAP1!0.83!28.15!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.83!19.31!AHRR;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.75!HMGA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.82!25.27!ZFHX4;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.55!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.60!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!0.81!30.00!CREB3L1;;chr3:21792585..21792625,-!p2@ZNF385D!0.81!6.16!ZNF385D;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.49!TBX3;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.34!RUNX1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.34!FOXC2;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.34!DLX2;;chr14:62162258..62162269,+!p2@HIF1A!0.79!54.66!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.78!28.56!HIF1A;;chr11:113930291..113930339,+!p2@ZBTB16!0.78!8.63!ZBTB16;;chr12:66218378..66218401,+!p6@HMGA2!0.78!8.01!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.77!13.15!EBF1;;chr12:66218443..66218461,+!p8@HMGA2!0.77!6.37!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.77!4.93!EN1;;chr4:111544219..111544240,-!p1@PITX2!0.77!4.93!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr4:111558135..111558198,-!p2@PITX2!0.76!4.73!PITX2;;chr20:39946361..39946379,-!p2@ZHX3!0.75!14.79!ZHX3;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.82!TWIST2;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.81!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.74!4.52!ATOH8;;chr12:66218420..66218439,+!p12@HMGA2!0.74!4.52!HMGA2;;chr16:86601052..86601066,+!p4@FOXC2!0.74!4.52!FOXC2;;chr11:17741254..17741282,+!p2@MYOD1!0.73!4.32!MYOD1;;chr12:54380036..54380091,+!p4@HOXC10!0.73!4.32!HOXC10;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.41!ENO1;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.60!TCF12;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.14!TBX3;;chr16:86600458..86600461,+!p3@FOXC2!0.71!4.11!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.70!6.37!ENO1;;chr5:92918860..92918871,+!p10@NR2F1!0.70!4.52!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.88!SNAI2;;chr5:92918768..92918783,+!p8@NR2F1!0.69!3.90!NR2F1;;chr1:170633058..170633084,+!p5@PRRX1!0.69!3.90!PRRX1;;chr12:543326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IS3;;chr9:35732647..35732678,+!p2@CREB3!0.28!8.84!CREB3;;chr2:28616358..28616380,+!p3@FOSL2!0.28!8.22!FOSL2;;chr3:187463179..187463201,-!p2@BCL6!0.28!6.37!BCL6;;chr19:58220517..58220583,-!p1@ZNF154!0.28!4.73!ZNF154;;chr8:116681221..116681236,-!p3@TRPS1!0.28!4.32!TRPS1;;chr20:3388579..3388619,-!p3@C20orf194!0.28!3.29!C20orf194;;chr19:37407172..37407217,-!p2@ZNF829!0.28!2.26!ZNF829;;chrX:101975619..101975641,+!p2@BHLHB9!0.28!2.26!BHLHB9;;chr12:124457725..124457736,+!p2@ZNF664!0.28!2.26!ZNF664;;chr9:94186085..94186096,-!p3@NFIL3!0.28!2.05!NFIL3;;chr15:96874216..96874236,+!p13@NR2F2!0.28!1.85!NR2F2;;chr7:104752306..104752335,+!p4@MLL5!0.28!1.64!MLL5;;chr8:57123873..57123894,-!p2@PLAG1!0.28!1.64!PLAG1;;chr19:45260775..45260838,+!p5@BCL3!0.28!1.44!BCL3;;chr19:13106383..13106423,+!p8@NFIX!0.28!1.44!NFIX;;chr11:6947720..6947812,+!p1@ZNF215!0.28!1.44!ZNF215;;chr10:8096772..8096787,+!p2@GATA3!0.28!1.23!GATA3;;chr17:46622229..46622257,-!p6@HOXB2!0.28!1.23!HOXB2;;chr17:38474489..38474548,+!p1@RARA!0.27!52.81!RARA;;chr9:35732592..35732640,+!p1@CREB3!0.27!21.99!CREB3;;chr1:61548225..61548299,+!p1@NFIA!0.27!21.37!NFIA;;chr20:39317868..39317884,-!p1@MAFB!0.27!19.52!MAFB;;chr13:41635512..41635539,-!p2@ELF1!0.27!8.84!ELF1;;chr19:58446721..58446779,-!p1@ZNF418!0.27!3.90!ZNF418;;chr1:33938236..33938267,+!p1@ZSCAN20!0.27!3.49!ZSCAN20;;chr19:37329254..37329295,-!p1@ZNF790!0.27!3.49!ZNF790;;chr1:61547781..61547809,+!p5@NFIA!0.27!2.67!NFIA;;chr1:8939265..8939367,-!p5@ENO1!0.27!2.67!ENO1;;chr8:28243813..28243839,-!p4@ZNF395!0.27!2.26!ZNF395;;chr8:72756667..72756736,-!p2@MSC!0.27!1.85!MSC;;chr5:178322893..178322931,+!p1@ZFP2!0.27!1.64!ZFP2;;chr1:61547811..61547837,+!p7@NFIA!0.27!1.64!NFIA;;chr15:96875041..96875052,+!p17@NR2F2!0.27!1.64!NR2F2;;chr14:24020938..24020988,-!p1@ZFHX2!0.27!1.64!ZFHX2;;chr13:46549688..46549712,-!p5@ZC3H13!0.27!1.44!ZC3H13;;chr19:7584815..7584829,+!p2@ZNF358!0.27!1.44!ZNF358;;chr2:28616337..28616355,+!p2@FOSL2!0.26!28.97!FOSL2;;chr9:73028332..73028385,-!p3@KLF9!0.26!4.93!KLF9;;chr4:47916613..47916640,-!p3@NFXL1!0.26!4.11!NFXL1;;chr21:36259445..36259519,-!p4@RUNX1!0.26!3.90!RUNX1;;chr3:48282536..48282586,+!p2@ZNF589!0.26!3.70!ZNF589;;chr1:211433151..211433191,+!p5@RCOR3!0.26!2.67!RCOR3;;chr22:46546494..46546525,+!p2@PPARA!0.26!2.47!PPARA;;chr1:235383681..235383700,-!p2@ARID4B!0.26!2.05!ARID4B;;chr1:35656352..35656383,-!p7@SFPQ!0.26!2.05!SFPQ;;chr6:45390002..45390023,+!p6@RUNX2!0.26!2.05!RUNX2;;chr16:73082004..73082033,-!p5@ZFHX3!0.26!1.85!ZFHX3;;chr17:46655704..46655718,-!p2@HOXB4!0.26!1.64!HOXB4;;chr22:42269885..42269899,+!p4@SREBF2!0.26!1.64!SREBF2;;chr4:87967906..87967931,+!p15@AFF1!0.26!1.44!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.26!1.44!ZNF215;;chr19:49864746..49864780,-!p2@TEAD2!0.26!1.44!TEAD2;;chr1:8926369..8926385,-!p12@ENO1!0.26!1.44!ENO1;;chr8:128747661..128747703,+!p6@MYC!0.26!1.44!MYC;;chrX:107018969..107019024,-!p6@TSC22D3!0.26!1.44!TSC22D3;;chr12:80083544..80083558,-!p13@PAWR!0.26!1.23!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.26!1.03!CREB3L1;;chr13:74707894..74707947,-!p6@KLF12!0.26!1.03!KLF12;;chr16:31454084..31454115,-!p1@ZNF843!0.26!1.03!ZNF843;;chr18:53068911..53068935,-!p4@TCF4!0.26!1.03!TCF4;;chr3:170076223..170076242,+!p6@SKIL!0.26!1.03!SKIL;;chr2:19558327..19558334,-!p2@OSR1!0.26!0.82!OSR1;;chr2:96012298..96012317,+!p6@KCNIP3!0.26!0.82!KCNIP3;;chr3:147110055..147110129,-!p1@ZIC4!0.26!0.82!ZIC4;;chr3:169381183..169381205,-!p4@MECOM!0.26!0.82!MECOM;;chr4:57522674..57522699,-!p5@HOPX!0.26!0.82!HOPX;;chr16:86612149..86612161,+!p2@FOXL1!0.26!0.82!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.26!0.82!HOXB2;;chr17:59477403..59477414,+!p4@TBX2!0.26!0.82!TBX2;;chr19:13135914..13135942,+!p19@NFIX!0.26!0.82!NFIX;;chr19:13135989..13136023,+!p18@NFIX!0.26!0.82!NFIX;;chr19:31840699..31840720,-!p7@TSHZ3!0.26!0.82!TSHZ3;;chr9:22447422..22447483,+!p1@DMRTA1!0.26!0.82!DMRTA1;;chrX:30327504..30327509,-!p1@NR0B1!0.26!0.82!NR0B1;;chr9:73029044..73029056,-!p10@KLF9!0.26!0.82!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.26!0.82!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.26!0.82!ZEB1;;chr10:3824206..3824226,-!p10@KLF6!0.26!0.82!KLF6;;chr11:113930355..113930366,+!p5@ZBTB16!0.26!0.82!ZBTB16;;chr11:128392265..128392267,-!p10@ETS1!0.26!0.82!ETS1;;chr11:65688877..65688891,+!p13@DRAP1!0.26!0.82!DRAP1;;chr12:53625846..53625861,-!p6@RARG!0.26!0.82!RARG;;chr12:54447637..54447659,+!p4@HOXC4!0.26!0.82!HOXC4;;chr12:66218413..66218418,+!p17@HMGA2!0.26!0.82!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.26!0.82!PAWR;;chr14:35872542..35872553,-!p10@NFKBIA!0.26!0.82!NFKBIA;;chr14:62214151..62214164,+!p11@HIF1A!0.26!0.82!HIF1A;;chr14:74256787..74256858,-!p6@C14orf43!0.26!0.82!C14orf43;;chr5:133477905..133477956,+!p5@TCF7!0.26!0.82!TCF7;;chr5:92920517..92920532,+!p15@NR2F1!0.26!0.82!NR2F1;;chr6:155635647..155635658,-!p2@TFB1M!0.26!0.82!TFB1M;;chr6:34210478..34210481,+!p8@HMGA1!0.26!0.82!HMGA1;;chr19:38714830..38714845,-!p5@DPF1!0.26!0.82!DPF1;;chr1:119530636..119530653,-!p2@TBX15!0.26!0.82!TBX15;;chr1:170632051..170632081,+!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000515;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11322-117D8 | |id=FF:11322-117D8 | ||
|is_a=EFO:0002091;;FF:0000164 | |is_a=EFO:0002091;;FF:0000164 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11965 | |||
|library_id_phase_based=2:CNhs11965 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11322 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTTTCG.11322 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11322 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTTTCG.11322 | |||
|name=Myoblast, donor2 | |name=Myoblast, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11965,LSID836,release011,COMPLETED | |profile_hcage=CNhs11965,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC3525 | |rna_catalog_number=SC3525 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=117D8 | |rna_tube_id=117D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTTTCG | |||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.79752764381;EVI1:1.60281327418;UFEwm:1.59232010503;NKX2-2,8:1.58204125151;ALX4:1.53731240859;FOXL1:1.52401380065;GZF1:1.47676653611;NKX3-1:1.18766749632;NR6A1:1.17292534758;AIRE:1.15680895362;HES1:1.14722308634;POU3F1..4:1.09176204567;T:1.06975224449;PAX1,9:1.04541572748;GATA4:1.01963273924;ZBTB16:0.922031036247;HOX{A4,D4}:0.891258944771;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.838943236422;EBF1:0.829856980168;ZNF238:0.829630401438;RXRA_VDR{dimer}:0.818854632636;TFCP2:0.789211936133;NR3C1:0.767601635243;KLF4:0.745675103315;TFAP4:0.724323225563;GFI1B:0.71948666495;TEAD1:0.717751962706;TLX1..3_NFIC{dimer}:0.695386796345;GTF2A1,2:0.684384751213;bHLH_family:0.653420740903;AR:0.622452983036;ESRRA:0.617618378581;ONECUT1,2:0.572717816761;ESR1:0.571824024854;SRF:0.568855792276;HMGA1,2:0.561723428242;ATF6:0.560830102536;EN1,2:0.559644220238;TBX4,5:0.559053790912;NANOG{mouse}:0.533120485612;IKZF1:0.520798491458;NFE2L1:0.49568684605;MAFB:0.486629786434;HMX1:0.484201857842;ARID5B:0.481269324467;TAL1_TCF{3,4,12}:0.47022078178;FOXD3:0.459551376609;GLI1..3:0.453675801355;HIF1A:0.449215264017;TOPORS:0.436693810399;YY1:0.413510210065;NKX2-1,4:0.408812363297;TFAP2{A,C}:0.389331938325;ZIC1..3:0.360311050122;MTF1:0.35609285074;ZNF384:0.344916030221;IKZF2:0.342598517126;MZF1:0.337690638325;MAZ:0.33337161282;LHX3,4:0.330562435412;HIC1:0.328045587251;NR1H4:0.324256600002;ZBTB6:0.322472294597;POU6F1:0.299763318043;FOXP1:0.275757607651;ELK1,4_GABP{A,B1}:0.271750088179;MYOD1:0.269619526721;SREBF1,2:0.268153295779;SMAD1..7,9:0.255945415219;NFATC1..3:0.242143991962;NRF1:0.236370428355;XCPE1{core}:0.227144355574;NHLH1,2:0.225344133707;SPZ1:0.222647262615;ZNF143:0.210429315602;XBP1:0.201188408879;GFI1:0.186883662126;PDX1:0.185554969138;RREB1:0.169680920914;TBP:0.155253969806;NKX6-1,2:0.153216536;REST:0.1516537524;EGR1..3:0.14318723442;MYBL2:0.142372310595;PAX5:0.138288806346;PATZ1:0.13418528526;HOX{A5,B5}:0.127058081733;GTF2I:0.12550845943;MED-1{core}:0.121274950849;HBP1_HMGB_SSRP1_UBTF:0.115021489409;ZNF423:0.110924220095;PRDM1:0.0880999120706;TP53:0.0847255994967;BACH2:0.0795304354162;PAX4:0.0722715263383;TFAP2B:0.0680185200583;FOXM1:0.0540632369719;MTE{core}:0.0411203635784;ZFP161:0.0309576250556;HNF1A:0.0247003917108;MYFfamily:0.0125185773475;LMO2:0.00458871368427;HSF1,2:-0.0107430825303;HOX{A6,A7,B6,B7}:-0.0218394058009;CDC5L:-0.0241992427063;NKX3-2:-0.029391517106;HAND1,2:-0.03189646725;HNF4A_NR2F1,2:-0.0485408912509;FOS_FOS{B,L1}_JUN{B,D}:-0.051930084228;NFIX:-0.0564031936839;STAT2,4,6:-0.0700333445159;NFE2L2:-0.0754861194807;PAX8:-0.0851465487191;DMAP1_NCOR{1,2}_SMARC:-0.0968002624348;SP1:-0.105552853778;HLF:-0.1121737895;STAT5{A,B}:-0.112196643447;PITX1..3:-0.121628875731;PPARG:-0.122472224251;E2F1..5:-0.136272974138;MEF2{A,B,C,D}:-0.141254822489;STAT1,3:-0.14648966098;TFDP1:-0.154121732783;POU1F1:-0.177740457729;SOX5:-0.194288816743;MYB:-0.20343982206;AHR_ARNT_ARNT2:-0.207859904857;FOXO1,3,4:-0.219519823546;CDX1,2,4:-0.230787088981;PAX3,7:-0.233001579135;TEF:-0.233500130032;CEBPA,B_DDIT3:-0.257922888242;LEF1_TCF7_TCF7L1,2:-0.271654423324;TLX2:-0.277872505581;SOX17:-0.279701477304;FOSL2:-0.280770611861;NFE2:-0.285622200268;IRF1,2:-0.299853668614;ALX1:-0.309329477384;FOXP3:-0.367737985791;ADNP_IRX_SIX_ZHX:-0.376172243352;NFKB1_REL_RELA:-0.387954264514;PAX6:-0.388308091027;BPTF:-0.399619212606;RUNX1..3:-0.405018466246;ZNF148:-0.422282042562;CREB1:-0.429216847163;PRRX1,2:-0.433788193708;RFX1:-0.434988237695;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.454107704763;SPI1:-0.465008929429;ELF1,2,4:-0.473928733456;NKX2-3_NKX2-5:-0.483218157946;TGIF1:-0.497388307806;NFY{A,B,C}:-0.515305565993;GCM1,2:-0.518707786078;DBP:-0.540114148038;RFX2..5_RFXANK_RFXAP:-0.542629869236;NR5A1,2:-0.547525297484;POU2F1..3:-0.54995339296;FOXQ1:-0.558743365102;PAX2:-0.584590499522;FOXN1:-0.589790687005;IRF7:-0.592887744622;BREu{core}:-0.597963124957;FOX{I1,J2}:-0.608830287324;ETS1,2:-0.609787692176;SPIB:-0.639170014988;FOXA2:-0.660096612771;FOX{D1,D2}:-0.691557747107;CRX:-0.695780818988;ATF4:-0.7012020837;ATF5_CREB3:-0.71346384402;SNAI1..3:-0.727007012538;SOX2:-0.809913127487;HOXA9_MEIS1:-0.82446550469;SOX{8,9,10}:-0.830517927491;ATF2:-0.871853995681;POU5F1:-0.895410736519;JUN:-0.929749313763;EP300:-0.941172474928;GATA6:-0.942196936968;VSX1,2:-0.942239994111;NFIL3:-0.959538528917;RBPJ:-0.960629713707;ZEB1:-1.01848395061;RORA:-1.0508248955;CUX2:-1.05676337897;NANOG:-1.27480735133;PBX1:-1.30298739436;OCT4_SOX2{dimer}:-1.31466183834;FOX{F1,F2,J1}:-1.80366916165 | |top_motifs=RXR{A,B,G}:1.79752764381;EVI1:1.60281327418;UFEwm:1.59232010503;NKX2-2,8:1.58204125151;ALX4:1.53731240859;FOXL1:1.52401380065;GZF1:1.47676653611;NKX3-1:1.18766749632;NR6A1:1.17292534758;AIRE:1.15680895362;HES1:1.14722308634;POU3F1..4:1.09176204567;T:1.06975224449;PAX1,9:1.04541572748;GATA4:1.01963273924;ZBTB16:0.922031036247;HOX{A4,D4}:0.891258944771;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.838943236422;EBF1:0.829856980168;ZNF238:0.829630401438;RXRA_VDR{dimer}:0.818854632636;TFCP2:0.789211936133;NR3C1:0.767601635243;KLF4:0.745675103315;TFAP4:0.724323225563;GFI1B:0.71948666495;TEAD1:0.717751962706;TLX1..3_NFIC{dimer}:0.695386796345;GTF2A1,2:0.684384751213;bHLH_family:0.653420740903;AR:0.622452983036;ESRRA:0.617618378581;ONECUT1,2:0.572717816761;ESR1:0.571824024854;SRF:0.568855792276;HMGA1,2:0.561723428242;ATF6:0.560830102536;EN1,2:0.559644220238;TBX4,5:0.559053790912;NANOG{mouse}:0.533120485612;IKZF1:0.520798491458;NFE2L1:0.49568684605;MAFB:0.486629786434;HMX1:0.484201857842;ARID5B:0.481269324467;TAL1_TCF{3,4,12}:0.47022078178;FOXD3:0.459551376609;GLI1..3:0.453675801355;HIF1A:0.449215264017;TOPORS:0.436693810399;YY1:0.413510210065;NKX2-1,4:0.408812363297;TFAP2{A,C}:0.389331938325;ZIC1..3:0.360311050122;MTF1:0.35609285074;ZNF384:0.344916030221;IKZF2:0.342598517126;MZF1:0.337690638325;MAZ:0.33337161282;LHX3,4:0.330562435412;HIC1:0.328045587251;NR1H4:0.324256600002;ZBTB6:0.322472294597;POU6F1:0.299763318043;FOXP1:0.275757607651;ELK1,4_GABP{A,B1}:0.271750088179;MYOD1:0.269619526721;SREBF1,2:0.268153295779;SMAD1..7,9:0.255945415219;NFATC1..3:0.242143991962;NRF1:0.236370428355;XCPE1{core}:0.227144355574;NHLH1,2:0.225344133707;SPZ1:0.222647262615;ZNF143:0.210429315602;XBP1:0.201188408879;GFI1:0.186883662126;PDX1:0.185554969138;RREB1:0.169680920914;TBP:0.155253969806;NKX6-1,2:0.153216536;REST:0.1516537524;EGR1..3:0.14318723442;MYBL2:0.142372310595;PAX5:0.138288806346;PATZ1:0.13418528526;HOX{A5,B5}:0.127058081733;GTF2I:0.12550845943;MED-1{core}:0.121274950849;HBP1_HMGB_SSRP1_UBTF:0.115021489409;ZNF423:0.110924220095;PRDM1:0.0880999120706;TP53:0.0847255994967;BACH2:0.0795304354162;PAX4:0.0722715263383;TFAP2B:0.0680185200583;FOXM1:0.0540632369719;MTE{core}:0.0411203635784;ZFP161:0.0309576250556;HNF1A:0.0247003917108;MYFfamily:0.0125185773475;LMO2:0.00458871368427;HSF1,2:-0.0107430825303;HOX{A6,A7,B6,B7}:-0.0218394058009;CDC5L:-0.0241992427063;NKX3-2:-0.029391517106;HAND1,2:-0.03189646725;HNF4A_NR2F1,2:-0.0485408912509;FOS_FOS{B,L1}_JUN{B,D}:-0.051930084228;NFIX:-0.0564031936839;STAT2,4,6:-0.0700333445159;NFE2L2:-0.0754861194807;PAX8:-0.0851465487191;DMAP1_NCOR{1,2}_SMARC:-0.0968002624348;SP1:-0.105552853778;HLF:-0.1121737895;STAT5{A,B}:-0.112196643447;PITX1..3:-0.121628875731;PPARG:-0.122472224251;E2F1..5:-0.136272974138;MEF2{A,B,C,D}:-0.141254822489;STAT1,3:-0.14648966098;TFDP1:-0.154121732783;POU1F1:-0.177740457729;SOX5:-0.194288816743;MYB:-0.20343982206;AHR_ARNT_ARNT2:-0.207859904857;FOXO1,3,4:-0.219519823546;CDX1,2,4:-0.230787088981;PAX3,7:-0.233001579135;TEF:-0.233500130032;CEBPA,B_DDIT3:-0.257922888242;LEF1_TCF7_TCF7L1,2:-0.271654423324;TLX2:-0.277872505581;SOX17:-0.279701477304;FOSL2:-0.280770611861;NFE2:-0.285622200268;IRF1,2:-0.299853668614;ALX1:-0.309329477384;FOXP3:-0.367737985791;ADNP_IRX_SIX_ZHX:-0.376172243352;NFKB1_REL_RELA:-0.387954264514;PAX6:-0.388308091027;BPTF:-0.399619212606;RUNX1..3:-0.405018466246;ZNF148:-0.422282042562;CREB1:-0.429216847163;PRRX1,2:-0.433788193708;RFX1:-0.434988237695;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.454107704763;SPI1:-0.465008929429;ELF1,2,4:-0.473928733456;NKX2-3_NKX2-5:-0.483218157946;TGIF1:-0.497388307806;NFY{A,B,C}:-0.515305565993;GCM1,2:-0.518707786078;DBP:-0.540114148038;RFX2..5_RFXANK_RFXAP:-0.542629869236;NR5A1,2:-0.547525297484;POU2F1..3:-0.54995339296;FOXQ1:-0.558743365102;PAX2:-0.584590499522;FOXN1:-0.589790687005;IRF7:-0.592887744622;BREu{core}:-0.597963124957;FOX{I1,J2}:-0.608830287324;ETS1,2:-0.609787692176;SPIB:-0.639170014988;FOXA2:-0.660096612771;FOX{D1,D2}:-0.691557747107;CRX:-0.695780818988;ATF4:-0.7012020837;ATF5_CREB3:-0.71346384402;SNAI1..3:-0.727007012538;SOX2:-0.809913127487;HOXA9_MEIS1:-0.82446550469;SOX{8,9,10}:-0.830517927491;ATF2:-0.871853995681;POU5F1:-0.895410736519;JUN:-0.929749313763;EP300:-0.941172474928;GATA6:-0.942196936968;VSX1,2:-0.942239994111;NFIL3:-0.959538528917;RBPJ:-0.960629713707;ZEB1:-1.01848395061;RORA:-1.0508248955;CUX2:-1.05676337897;NANOG:-1.27480735133;PBX1:-1.30298739436;OCT4_SOX2{dimer}:-1.31466183834;FOX{F1,F2,J1}:-1.80366916165 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11322-117D8;search_select_hide=table117:FF:11322-117D8 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Myoblast, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11965 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11965
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11965
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.699 |
| 10 | 10 | 0.0319 |
| 100 | 100 | 0.914 |
| 101 | 101 | 0.651 |
| 102 | 102 | 0.965 |
| 103 | 103 | 0.514 |
| 104 | 104 | 0.596 |
| 105 | 105 | 0.011 |
| 106 | 106 | 0.219 |
| 107 | 107 | 0.161 |
| 108 | 108 | 0.51 |
| 109 | 109 | 0.788 |
| 11 | 11 | 0.968 |
| 110 | 110 | 0.304 |
| 111 | 111 | 0.715 |
| 112 | 112 | 0.273 |
| 113 | 113 | 0.919 |
| 114 | 114 | 0.535 |
| 115 | 115 | 0.0693 |
| 116 | 116 | 0.0692 |
| 117 | 117 | 0.125 |
| 118 | 118 | 0.459 |
| 119 | 119 | 0.665 |
| 12 | 12 | 0.616 |
| 120 | 120 | 0.0785 |
| 121 | 121 | 0.809 |
| 122 | 122 | 0.0029 |
| 123 | 123 | 0.118 |
| 124 | 124 | 0.0327 |
| 125 | 125 | 0.97 |
| 126 | 126 | 0.96 |
| 127 | 127 | 0.8 |
| 128 | 128 | 0.956 |
| 129 | 129 | 0.383 |
| 13 | 13 | 0.834 |
| 130 | 130 | 0.81 |
| 131 | 131 | 0.627 |
| 132 | 132 | 0.532 |
| 133 | 133 | 0.817 |
| 134 | 134 | 0.831 |
| 135 | 135 | 0.613 |
| 136 | 136 | 0.0851 |
| 137 | 137 | 0.106 |
| 138 | 138 | 0.308 |
| 139 | 139 | 0.673 |
| 14 | 14 | 0.197 |
| 140 | 140 | 0.146 |
| 141 | 141 | 0.113 |
| 142 | 142 | 0.905 |
| 143 | 143 | 0.707 |
| 144 | 144 | 0.587 |
| 145 | 145 | 0.324 |
| 146 | 146 | 0.368 |
| 147 | 147 | 0.207 |
| 148 | 148 | 0.69 |
| 149 | 149 | 0.243 |
| 15 | 15 | 0.556 |
| 150 | 150 | 0.842 |
| 151 | 151 | 0.784 |
| 152 | 152 | 0.232 |
| 153 | 153 | 0.573 |
| 154 | 154 | 0.779 |
| 155 | 155 | 0.0449 |
| 156 | 156 | 0.41 |
| 157 | 157 | 0.289 |
| 158 | 158 | 0.00345 |
| 159 | 159 | 0.378 |
| 16 | 16 | 0.0576 |
| 160 | 160 | 0.683 |
| 161 | 161 | 0.482 |
| 162 | 162 | 0.185 |
| 163 | 163 | 0.962 |
| 164 | 164 | 0.44 |
| 165 | 165 | 0.413 |
| 166 | 166 | 0.193 |
| 167 | 167 | 0.983 |
| 168 | 168 | 0.859 |
| 169 | 169 | 0.17 |
| 17 | 17 | 0.749 |
| 18 | 18 | 0.995 |
| 19 | 19 | 0.024 |
| 2 | 2 | 0.844 |
| 20 | 20 | 0.86 |
| 21 | 21 | 0.0342 |
| 22 | 22 | 0.34 |
| 23 | 23 | 0.847 |
| 24 | 24 | 0.532 |
| 25 | 25 | 0.273 |
| 26 | 26 | 0.7 |
| 27 | 27 | 0.888 |
| 28 | 28 | 0.283 |
| 29 | 29 | 0.51 |
| 3 | 3 | 0.527 |
| 30 | 30 | 0.533 |
| 31 | 31 | 0.753 |
| 32 | 32 | 2.65898e-8 |
| 33 | 33 | 0.96 |
| 34 | 34 | 0.279 |
| 35 | 35 | 0.957 |
| 36 | 36 | 0.0185 |
| 37 | 37 | 0.072 |
| 38 | 38 | 0.557 |
| 39 | 39 | 0.219 |
| 4 | 4 | 0.0427 |
| 40 | 40 | 0.0326 |
| 41 | 41 | 0.157 |
| 42 | 42 | 0.316 |
| 43 | 43 | 0.713 |
| 44 | 44 | 0.205 |
| 45 | 45 | 0.463 |
| 46 | 46 | 0.57 |
| 47 | 47 | 0.491 |
| 48 | 48 | 0.705 |
| 49 | 49 | 0.281 |
| 5 | 5 | 0.496 |
| 50 | 50 | 0.428 |
| 51 | 51 | 0.751 |
| 52 | 52 | 0.324 |
| 53 | 53 | 0.0631 |
| 54 | 54 | 0.984 |
| 55 | 55 | 0.122 |
| 56 | 56 | 0.905 |
| 57 | 57 | 0.929 |
| 58 | 58 | 0.227 |
| 59 | 59 | 0.285 |
| 6 | 6 | 0.265 |
| 60 | 60 | 0.128 |
| 61 | 61 | 0.428 |
| 62 | 62 | 0.687 |
| 63 | 63 | 0.189 |
| 64 | 64 | 0.296 |
| 65 | 65 | 0.961 |
| 66 | 66 | 0.203 |
| 67 | 67 | 0.924 |
| 68 | 68 | 0.307 |
| 69 | 69 | 0.721 |
| 7 | 7 | 0.305 |
| 70 | 70 | 0.518 |
| 71 | 71 | 0.411 |
| 72 | 72 | 0.259 |
| 73 | 73 | 0.00846 |
| 74 | 74 | 0.214 |
| 75 | 75 | 0.504 |
| 76 | 76 | 0.412 |
| 77 | 77 | 0.0835 |
| 78 | 78 | 0.907 |
| 79 | 79 | 0.0733 |
| 8 | 8 | 0.249 |
| 80 | 80 | 0.0145 |
| 81 | 81 | 0.645 |
| 82 | 82 | 0.832 |
| 83 | 83 | 0.585 |
| 84 | 84 | 0.643 |
| 85 | 85 | 0.513 |
| 86 | 86 | 0.243 |
| 87 | 87 | 0.0756 |
| 88 | 88 | 0.961 |
| 89 | 89 | 0.871 |
| 9 | 9 | 0.936 |
| 90 | 90 | 0.482 |
| 91 | 91 | 0.601 |
| 92 | 92 | 0.675 |
| 93 | 93 | 0.671 |
| 94 | 94 | 0.985 |
| 95 | 95 | 0.942 |
| 96 | 96 | 0.447 |
| 97 | 97 | 0.965 |
| 98 | 98 | 0.166 |
| 99 | 99 | 0.00574 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11965
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
