FF:11504-119G1: Difference between revisions

Latest revision as of 18:04, 4 June 2020

Name:	Hair Follicle Outer Root Sheath Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12339
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hair follicle
dev stage	NA
sex	NA
age	NA
cell type	hair follicle, outer root sheath cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC2425
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005176

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12339		CAGE		DRX008299		DRR009171

Accession ID Hg19

Library id		BAM		CTSS
CNhs12339		DRZ000596		DRZ001981

Accession ID Hg38

Library id		BAM		CTSS
CNhs12339		DRZ011946		DRZ013331

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.393
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.758
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.521
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0819
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.166
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.281
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.278
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.677
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.379
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.166
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.166
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0257
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.491
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.166
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.166
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.379
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0076
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.285
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.379
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.084
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12339

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.238
MA0003.1	MA0003.1	0.372
MA0004.1	MA0004.1	0.273
MA0006.1	MA0006.1	0.489
MA0007.1	MA0007.1	0.0451
MA0009.1	MA0009.1	0.384
MA0014.1	MA0014.1	0.794
MA0017.1	MA0017.1	0.813
MA0018.2	MA0018.2	0.0019
MA0019.1	MA0019.1	0.528
MA0024.1	MA0024.1	1.37605e-8
MA0025.1	MA0025.1	0.00141
MA0027.1	MA0027.1	0.568
MA0028.1	MA0028.1	0.846
MA0029.1	MA0029.1	0.89
MA0030.1	MA0030.1	0.698
MA0031.1	MA0031.1	0.454
MA0035.2	MA0035.2	0.00659
MA0038.1	MA0038.1	0.0116
MA0039.2	MA0039.2	0.0884
MA0040.1	MA0040.1	0.513
MA0041.1	MA0041.1	0.765
MA0042.1	MA0042.1	0.795
MA0043.1	MA0043.1	0.0119
MA0046.1	MA0046.1	0.264
MA0047.2	MA0047.2	0.997
MA0048.1	MA0048.1	0.0896
MA0050.1	MA0050.1	0.968
MA0051.1	MA0051.1	0.768
MA0052.1	MA0052.1	0.754
MA0055.1	MA0055.1	0.575
MA0057.1	MA0057.1	0.855
MA0058.1	MA0058.1	0.283
MA0059.1	MA0059.1	0.692
MA0060.1	MA0060.1	1.60152e-11
MA0061.1	MA0061.1	0.798
MA0062.2	MA0062.2	0.00237
MA0065.2	MA0065.2	0.553
MA0066.1	MA0066.1	0.394
MA0067.1	MA0067.1	0.0546
MA0068.1	MA0068.1	0.984
MA0069.1	MA0069.1	0.129
MA0070.1	MA0070.1	0.302
MA0071.1	MA0071.1	0.917
MA0072.1	MA0072.1	0.631
MA0073.1	MA0073.1	0.824
MA0074.1	MA0074.1	0.0464
MA0076.1	MA0076.1	0.4
MA0077.1	MA0077.1	0.103
MA0078.1	MA0078.1	0.374
MA0079.2	MA0079.2	0.109
MA0080.2	MA0080.2	2.41241e-7
MA0081.1	MA0081.1	0.049
MA0083.1	MA0083.1	1.04269e-4
MA0084.1	MA0084.1	0.017
MA0087.1	MA0087.1	0.197
MA0088.1	MA0088.1	0.369
MA0090.1	MA0090.1	0.00164
MA0091.1	MA0091.1	0.0959
MA0092.1	MA0092.1	0.0984
MA0093.1	MA0093.1	0.204
MA0099.2	MA0099.2	2.23728e-4
MA0100.1	MA0100.1	0.528
MA0101.1	MA0101.1	0.0848
MA0102.2	MA0102.2	0.885
MA0103.1	MA0103.1	1.63034e-4
MA0104.2	MA0104.2	0.396
MA0105.1	MA0105.1	0.0334
MA0106.1	MA0106.1	0.0854
MA0107.1	MA0107.1	0.094
MA0108.2	MA0108.2	0.109
MA0111.1	MA0111.1	0.855
MA0112.2	MA0112.2	0.00254
MA0113.1	MA0113.1	0.0058
MA0114.1	MA0114.1	0.308
MA0115.1	MA0115.1	0.0538
MA0116.1	MA0116.1	0.0605
MA0117.1	MA0117.1	0.845
MA0119.1	MA0119.1	0.00894
MA0122.1	MA0122.1	0.652
MA0124.1	MA0124.1	0.277
MA0125.1	MA0125.1	0.423
MA0131.1	MA0131.1	0.611
MA0135.1	MA0135.1	0.318
MA0136.1	MA0136.1	1.39435e-6
MA0137.2	MA0137.2	0.366
MA0138.2	MA0138.2	0.578
MA0139.1	MA0139.1	0.825
MA0140.1	MA0140.1	0.0824
MA0141.1	MA0141.1	0.989
MA0142.1	MA0142.1	0.704
MA0143.1	MA0143.1	0.128
MA0144.1	MA0144.1	0.043
MA0145.1	MA0145.1	0.365
MA0146.1	MA0146.1	0.168
MA0147.1	MA0147.1	0.426
MA0148.1	MA0148.1	0.839
MA0149.1	MA0149.1	0.465
MA0150.1	MA0150.1	0.00674
MA0152.1	MA0152.1	0.0804
MA0153.1	MA0153.1	0.74
MA0154.1	MA0154.1	0.122
MA0155.1	MA0155.1	0.677
MA0156.1	MA0156.1	4.17065e-6
MA0157.1	MA0157.1	0.0884
MA0159.1	MA0159.1	0.511
MA0160.1	MA0160.1	0.13
MA0162.1	MA0162.1	0.104
MA0163.1	MA0163.1	1.76246e-4
MA0164.1	MA0164.1	0.624
MA0258.1	MA0258.1	0.369
MA0259.1	MA0259.1	0.424

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12339

Novel motif	Logo	P-value
1	1	0.695
10	10	0.059
100	100	0.62
101	101	0.723
102	102	0.0474
103	103	0.0941
104	104	0.404
105	105	0.35
106	106	0.119
107	107	0.202
108	108	0.31
109	109	0.237
11	11	0.893
110	110	0.404
111	111	0.777
112	112	0.363
113	113	0.164
114	114	0.0739
115	115	0.853
116	116	0.0337
117	117	0.202
118	118	0.927
119	119	0.79
12	12	0.337
120	120	0.199
121	121	0.448
122	122	0.00301
123	123	0.00275
124	124	0.617
125	125	0.988
126	126	0.699
127	127	0.841
128	128	0.112
129	129	0.37
13	13	0.994
130	130	0.853
131	131	0.86
132	132	0.23
133	133	0.897
134	134	0.581
135	135	0.848
136	136	0.396
137	137	0.109
138	138	0.972
139	139	0.514
14	14	0.377
140	140	0.426
141	141	0.508
142	142	0.859
143	143	0.882
144	144	0.226
145	145	0.324
146	146	0.969
147	147	0.259
148	148	0.395
149	149	0.0342
15	15	0.473
150	150	0.473
151	151	0.678
152	152	0.157
153	153	0.115
154	154	0.358
155	155	0.14
156	156	0.318
157	157	0.727
158	158	0.116
159	159	0.652
16	16	0.0358
160	160	0.122
161	161	0.538
162	162	0.357
163	163	0.396
164	164	0.0441
165	165	0.916
166	166	0.537
167	167	0.862
168	168	0.801
169	169	0.0363
17	17	0.492
18	18	0.343
19	19	0.0139
2	2	0.703
20	20	0.747
21	21	0.166
22	22	0.156
23	23	0.385
24	24	0.975
25	25	0.369
26	26	0.0165
27	27	0.551
28	28	0.238
29	29	0.0538
3	3	0.0454
30	30	0.796
31	31	0.947
32	32	8.45585e-8
33	33	0.272
34	34	0.438
35	35	0.522
36	36	0.66
37	37	0.0153
38	38	0.658
39	39	0.484
4	4	0.0376
40	40	0.477
41	41	0.564
42	42	0.663
43	43	0.474
44	44	0.734
45	45	0.49
46	46	0.0901
47	47	0.994
48	48	0.768
49	49	0.643
5	5	0.819
50	50	0.592
51	51	0.805
52	52	0.82
53	53	0.155
54	54	0.77
55	55	3.31546e-4
56	56	0.62
57	57	0.868
58	58	0.435
59	59	0.199
6	6	0.829
60	60	0.77
61	61	0.639
62	62	0.813
63	63	0.335
64	64	0.332
65	65	0.369
66	66	0.263
67	67	0.613
68	68	0.467
69	69	0.454
7	7	0.26
70	70	0.114
71	71	0.0742
72	72	0.872
73	73	0.0154
74	74	0.35
75	75	0.19
76	76	0.432
77	77	0.157
78	78	0.829
79	79	0.0464
8	8	0.238
80	80	0.139
81	81	0.939
82	82	0.651
83	83	0.525
84	84	0.111
85	85	0.0661
86	86	0.838
87	87	0.733
88	88	0.106
89	89	0.155
9	9	0.599
90	90	0.363
91	91	0.806
92	92	0.0373
93	93	0.146
94	94	0.458
95	95	0.126
96	96	0.951
97	97	0.991
98	98	0.58
99	99	0.00193

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12339

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000075 human outer root sheath cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002559 (hair follicle cell)
0002561 (outer root sheath cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0005933 (hair root sheath)
0005942 (hair outer root sheath)
0002416 (integumental system)
0005932 (bulb of hair follicle)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000075 (human outer root sheath cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003102,UBERON:0007376,UBERON:0005085,UBERON:0001048,UBERON:0006598,UBERON:0005933,UBERON:0002532,UBERON:0005942,UBERON:0000924,UBERON:0002416,UBERON:0005932,UBERON:0006601,UBERON:0007383,UBERON:0005086
+|DRA_sample_Accession=CAGE@SAMD00005176
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000221,CL:0000220,CL:0000004,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
+|accession_numbers=CAGE;DRX008299;DRR009171;DRZ000596;DRZ001981;DRZ011946;DRZ013331
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000075
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!1.69!54.33!RUNX2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.27!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.59!43.19!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.58!61.30!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.54!58.51!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.19!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.48!520.09!FOSB;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.79!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.33!TCF21;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.05!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.36!32.04!NFIX;;chr8:93074803..93074845,-!p1@RUNX1T1!1.36!21.83!RUNX1T1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.36!21.83!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.01!EBF1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.97!KCNIP3;;chr2:119605214..119605230,-!p1@EN1!1.31!19.50!EN1;;chr5:137804484..137804498,+!p2@EGR1!1.27!70.12!EGR1;;chr5:92918919..92918942,+!p1@NR2F1!1.26!74.76!NR2F1;;chr3:157823517..157823562,-!p1@SHOX2!1.26!18.57!SHOX2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.18!TBX20;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.72!KCNIP3;;chr6:108977520..108977534,+!p7@FOXO3!1.23!15.79!FOXO3;;chr2:176994408..176994492,+!p1@HOXD8!1.21!15.32!HOXD8;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.08!TWIST2;;chr2:96012757..96012779,+!p8@KCNIP3!1.17!13.93!KCNIP3;;chr13:45151259..45151326,-!p2@TSC22D1!1.16!80.34!TSC22D1;;chr14:75746722..75746777,+!p2@FOS!1.15!16.72!FOS;;chr14:75745523..75745537,+!p1@FOS!1.13!1479.01!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.25!PRRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.12!12.07!HOXC8;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.69!SNAI2;;chr2:214015111..214015179,-!p1@IKZF2!1.10!20.90!IKZF2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.72!ZBTB16;;chr1:170632250..170632277,+!p7@PRRX1!1.10!11.61!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.08!11.14!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.07!27.40!TWIST1;;chr9:77112244..77112262,+!p1@RORB!1.07!12.07!RORB;;chr3:147127142..147127168,+!p1@ZIC1!1.07!10.68!ZIC1;;chr5:137801160..137801176,+!p1@EGR1!1.06!1036.47!EGR1;;chr14:61116183..61116208,-!p1@SIX1!1.06!39.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.61!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.02!10.22!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.22!PRRX1;;chr8:116673894..116673913,-!p12@TRPS1!1.01!9.29!TRPS1;;chr3:147127177..147127194,+!p2@ZIC1!1.01!9.29!ZIC1;;chr3:187463179..187463201,-!p2@BCL6!1.00!38.08!BCL6;;chr12:54394309..54394336,+!p2@HOXC9!0.99!8.82!HOXC9;;chr11:65687362..65687436,+!p3@DRAP1!0.98!40.40!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.58!CREB3L1;;chr5:92918894..92918912,+!p2@NR2F1!0.97!27.86!NR2F1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.36!RUNX1T1;;chr2:96012353..96012378,+!p4@KCNIP3!0.97!8.36!KCNIP3;;chrY:21906594..21906622,-!p1@KDM5D!0.97!8.36!KDM5D;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.75!OSR1;;chr2:231084820..231084836,-!p5@SP110!0.96!9.29!SP110;;chr2:119604456..119604501,-!p2@EN1!0.95!7.89!EN1;;chr12:54393880..54393962,+!p1@HOXC9!0.95!7.89!HOXC9;;chr10:63809013..63809041,+!p3@ARID5B!0.94!44.58!ARID5B;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.67!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.93!11.61!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.93!8.36!NR2F1;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.43!PAX3;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.43!PRRX1;;chrX:66763856..66763896,+!p1@AR!0.92!10.68!AR;;chr10:31607702..31607755,+!p3@ZEB1!0.91!8.36!ZEB1;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.29!EBF1;;chr3:147111231..147111281,+!p3@ZIC1!0.90!6.97!ZIC1;;chr3:147139053..147139112,+!p5@ZIC1!0.90!6.97!ZIC1;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.54!TBX18;;chr6:85473156..85473210,-!p2@TBX18!0.89!8.36!TBX18;;chr5:92920456..92920488,+!p9@NR2F1!0.89!7.89!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.89!HOXB6;;chr15:57511589..57511608,+!p4@TCF12!0.88!6.50!TCF12;;chr11:113930401..113930422,+!p3@ZBTB16!0.88!6.50!ZBTB16;;chr13:45150455..45150472,-!p8@TSC22D1!0.88!6.50!TSC22D1;;chr12:53614115..53614154,-!p1@RARG!0.87!36.22!RARG;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.90!IFI16;;chr3:141105705..141105770,+!p4@ZBTB38!0.87!7.89!ZBTB38;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.65!HOXB2;;chr10:31607811..31607837,+!p6@ZEB1!0.85!6.04!ZEB1;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.04!IRX2;;chr19:13136130..13136165,+!p6@NFIX!0.84!7.89!NFIX;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.40!NFATC4;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr5:92919100..92919135,+!p3@NR2F1!0.82!6.97!NR2F1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.57!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.82!5.57!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.57!NFIX;;chrX:66763815..66763854,+!p2@AR!0.81!7.43!AR;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.43!TEAD1;;chr9:73029219..73029289,-!p2@KLF9!0.80!17.18!KLF9;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.29!CREB3L1;;chr3:168865194..168865245,-!p3@MECOM!0.80!6.97!MECOM;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.79!ZMAT3;;chr12:66218598..66218645,+!p2@HMGA2!0.79!26.00!HMGA2;;chr12:57504975..57505019,-!p2@STAT6!0.79!22.75!STAT6;;chr11:113930291..113930339,+!p2@ZBTB16!0.79!8.82!ZBTB16;;chr11:44331576..44331650,-!p1@ALX4!0.79!5.11!ALX4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.11!HOXC5;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.11!FOXL2;;chr15:67391010..67391046,+!p13@SMAD3!0.79!5.11!SMAD3;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.72!TBX2;;chr19:13136241..13136258,+!p7@NFIX!0.78!6.97!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.75!119.81!NFIX;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.82!NFIX;;chr19:31840130..31840160,-!p2@TSHZ3!0.75!7.43!TSHZ3;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.43!OSR2;;chr20:55204351..55204377,+!p1@TFAP2C!0.75!6.04!TFAP2C;;chr5:92919068..92919082,+!p5@NR2F1!0.75!5.57!NR2F1;;chr2:95963120..95963136,+!p2@KCNIP3!0.75!4.64!KCNIP3;;chr3:147111505..147111529,+!p6@ZIC1!0.75!4.64!ZIC1;;chr3:181429741..181429767,+!p2@SOX2!0.75!4.64!SOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.64!CREB3L1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.64!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.64!ZFY;;chrX:106960285..106960299,-!p1@TSC22D3!0.74!134.20!TSC22D3;;chrX:106960180..106960197,-!p2@TSC22D3!0.74!19.04!TSC22D3;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.04!NFATC2;;chr6:108881012..108881034,+!p3@FOXO3!0.73!17.18!FOXO3;;chr12:48298765..48298783,-!p2@VDR!0.71!9.29!VDR;;chr2:28618532..28618610,+!p4@FOSL2!0.71!7.43!FOSL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.71!4.18!ZBTB38;;chr12:53625846..53625861,-!p6@RARG!0.71!4.18!RARG;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.18!ARNT2;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.18!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!0.70!588.35!CEBPD;;chr3:141087393..141087426,+!p3@ZBTB38!0.70!17.65!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.70!17.65!ZNF503;;chr9:2015306..2015323,+!p3@SMARCA2!0.70!11.61!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!6.97!MEIS3;;chr1:59249707..59249727,-!p1@JUN!0.69!189.00!JUN;;chr7:44143925..44143970,+!p1@AEBP1!0.69!99.84!AEBP1;;chr9:2015335..2015370,+!p1@SMARCA2!0.69!53.87!SMARCA2;;chr5:72744594..72744609,-!p1@FOXD1!0.69!19.97!FOXD1;;chr8:77593474..77593612,+!p1@ZFHX4!0.69!18.57!ZFHX4;;chr20:39946361..39946379,-!p2@ZHX3!0.69!13.00!ZHX3;;chr13:45151403..45151433,-!p5@TSC22D1!0.69!9.29!TSC22D1;;chr5:43067636..43067674,+!p6@ZNF131!0.69!5.57!ZNF131;;chr5:137804130..137804156,+!p5@EGR1!0.69!4.18!EGR1;;chr19:12902289..12902307,+!p1@JUNB!0.68!1000.25!JUNB;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.05!ZNF503;;chr14:62162258..62162269,+!p2@HIF1A!0.68!41.79!HIF1A;;chr1:59249688..59249703,-!p3@JUN!0.68!26.00!JUN;;chr7:42276787..42276815,-!p1@GLI3!0.68!11.14!GLI3;;chr13:41240717..41240735,-!p2@FOXO1!0.67!28.79!FOXO1;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.29!ARID5B;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.61!EGR3;;chr1:221053049..221053075,+!p3@HLX!0.67!6.97!HLX;;chr1:170632137..170632172,+!p10@PRRX1!0.67!3.71!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.71!IRX2;;chr15:80842979..80842998,+!p20@ARNT2!0.67!3.71!ARNT2;;chr2:119605374..119605377,-!p7@EN1!0.67!3.71!EN1;;chr2:214014959..214015006,-!p4@IKZF2!0.67!3.71!IKZF2;;chr3:147111198..147111225,+!p4@ZIC1!0.67!3.71!ZIC1;;chr13:73633131..73633149,+!p1@KLF5!0.66!44.58!KLF5;;chr9:73028814..73028895,-!p1@KLF9!0.66!41.33!KLF9;;chr8:57123815..57123867,-!p1@PLAG1!0.66!16.72!PLAG1;;chr18:53068911..53068935,-!p4@TCF4!0.66!4.18!TCF4;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.36!ZNF503;;chr5:137804357..137804390,+!p4@EGR1!0.65!4.18!EGR1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.65!3.71!GLIS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.34!TAX1BP3;;chr20:39317868..39317884,-!p1@MAFB!0.64!47.37!MAFB;;chr12:66218255..66218304,+!p3@HMGA2!0.64!10.22!HMGA2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.89!SATB2;;chr3:168864315..168864339,-!p2@MECOM!0.64!6.04!MECOM;;chr15:42743341..42743377,-!p3@ZFP106!0.64!6.04!ZFP106;;chr5:137804405..137804444,+!p3@EGR1!0.64!4.18!EGR1;;chr17:40440481..40440550,+!p1@STAT5A!0.63!27.86!STAT5A;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.18!HOXC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.71!CREB3L1;;chr5:92918860..92918871,+!p10@NR2F1!0.63!3.71!NR2F1;;chr1:170632028..170632043,+!p20@PRRX1!0.63!3.25!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.25!ZNF668;;chr17:46675558..46675577,-!p2@HOXB6!0.63!3.25!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.25!RFX8;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.25!IKZF2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.25!FOXL2;;chr3:147110055..147110129,-!p1@ZIC4!0.63!3.25!ZIC4;;chr3:25470156..25470227,+!p2@RARB!0.63!3.25!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.63!3.25!ZBTB47;;chr15:83953397..83953425,-!p1@BNC1!0.62!3.71!BNC1;;chr12:48298785..48298828,-!p1@VDR!0.61!19.50!VDR;;chr12:104531854..104531893,-!p2@NFYB!0.61!13.00!NFYB;;chr3:187463220..187463232,-!p3@BCL6!0.61!10.68!BCL6;;chr5:34929947..34930005,+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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002561;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11504-119G1
 |is_a=EFO:0002091;;FF:0000075
 |is_obsolete=
+|library_id=CNhs12339
+|library_id_phase_based=2:CNhs12339
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11504
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11504
 |name=Hair Follicle Outer Root Sheath Cells, donor1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12339,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=119
 |rna_catalog_number=SC2425
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11504-119G1;search_select_hide=table117:FF:11504-119G1
 }}

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FF:11504-119G1: Difference between revisions

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Latest revision as of 18:04, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0