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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005705
|accession_numbers=CAGE;DRX008189;DRR009061;DRZ000486;DRZ001871;DRZ011836;DRZ013221
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
|comment=Changed from previous label. TODO: full classification
|comment=Changed from previous label. TODO: full classification
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.22!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.12!GATA3;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.99!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.61!48.08!GATA3;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.94!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.54!IKZF1;;chr17:1959369..1959388,+!p2@HIC1!1.52!82.91!HIC1;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.60!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.45!27.36!SP140;;chr6:391743..391759,+!p1@IRF4!1.44!26.81!IRF4;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.82!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.70!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.42!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.11!AKNA;;chr8:60031619..60031676,-!p1@TOX!1.40!51.40!TOX;;chr1:92951607..92951661,-!p1@GFI1!1.40!24.32!GFI1;;chr5:133450365..133450444,+!p1@TCF7!1.37!98.66!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.73!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.33!26.81!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.32!86.50!NFATC3;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.34!KDM5D;;chr7:50348268..50348366,+!p4@IKZF1!1.29!18.52!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.28!17.96!ZBP1;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.75!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.54!BACH2;;chr14:99738138..99738163,-!p1@BCL11B!1.19!14.37!BCL11B;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.58!GATA3;;chr4:109087445..109087463,-!p1@LEF1!1.17!13.82!LEF1;;chr4:109089901..109089930,-!p3@LEF1!1.17!13.82!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.79!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.16!13.54!TCF7;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.36!PBX4;;chr20:56195525..56195556,-!p2@ZBP1!1.10!11.61!ZBP1;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.71!ELF1;;chr2:231090471..231090504,+!p2@SP140!0.99!8.84!SP140;;chr7:77428066..77428132,+!p2@PHTF2!0.97!55.27!PHTF2;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.29!JARID2;;chr17:45810594..45810608,+!p1@TBX21!0.95!8.01!TBX21;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.34!MXD3;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.74!ARID5A;;chr4:109090075..109090095,-!p2@LEF1!0.94!7.74!LEF1;;chr19:16435625..16435682,+!p1@KLF2!0.93!251.20!KLF2;;chr20:52226313..52226350,-!p3@ZNF217!0.93!7.46!ZNF217;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.26!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.71!SATB1;;chr1:25256756..25256774,-!p1@RUNX3!0.91!13.82!RUNX3;;chr17:46621146..46621180,-!p10@HOXB2!0.91!7.19!HOXB2;;chr3:71007344..71007348,-!p6@FOXP1!0.90!29.29!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.98!RUNX1;;chr2:214015343..214015366,-!p3@IKZF2!0.90!6.91!IKZF2;;chr3:18480217..18480239,-!p3@SATB1!0.90!6.91!SATB1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.10!DDB2;;chr5:131826457..131826514,-!p1@IRF1!0.88!274.14!IRF1;;chr16:79634595..79634620,-!p2@MAF!0.88!12.44!MAF;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.63!IKZF4;;chr1:92949331..92949377,-!p2@GFI1!0.87!6.36!GFI1;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.36!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.85!218.87!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.85!16.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.61!E2F2;;chr3:71542684..71542720,-!p18@FOXP1!0.85!6.08!FOXP1;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.08!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.85!6.08!TOX;;chr14:99738059..99738086,-!p2@BCL11B!0.85!6.08!BCL11B;;chrX:49121165..49121179,-!p1@FOXP3!0.85!6.08!FOXP3;;chrX:134477924..134477988,-!p1@ZNF75D!0.84!23.77!ZNF75D;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.22!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.83!73.79!FLI1;;chr16:79634624..79634642,-!p1@MAF!0.83!24.04!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.83!7.46!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.80!ZFY;;chr5:321810..321877,+!p1@AHRR!0.82!18.79!AHRR;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.48!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.82!7.74!HOXB2;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.63!SNAI3;;chr11:113930425..113930471,+!p1@ZBTB16!0.81!8.01!ZBTB16;;chr3:18487057..18487105,-!p4@SATB1!0.80!5.25!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.80!5.25!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!0.80!5.25!IKZF3;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.25!CREB3L2;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.67!JARID2;;chr7:128577972..128578047,+!p1@IRF5!0.79!8.57!IRF5;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.97!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.78!4.97!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.78!4.97!HSF5;;chr3:71179699..71179744,-!p2@FOXP1!0.76!38.97!FOXP1;;chr14:64970670..64970712,-!p3@ZBTB25!0.76!11.05!ZBTB25;;chr4:109089996..109090012,-!p5@LEF1!0.76!4.70!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!0.76!4.70!BCL11B;;chr15:60884706..60884743,-!p1@RORA!0.74!25.70!RORA;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!34.82!STAT5A;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.92!ZBTB25;;chr2:148778973..148779035,+!p3@MBD5!0.73!12.44!MBD5;;chr3:27763807..27763822,-!p1@EOMES!0.73!4.42!EOMES;;chr10:8097321..8097348,+!p4@GATA3!0.73!4.42!GATA3;;chr9:20622444..20622468,-!p2@MLLT3!0.72!15.20!MLLT3;;chr19:19779619..19779670,+!p1@ZNF101!0.72!12.99!ZNF101;;chr8:71316428..71316459,-!p2@NCOA2!0.72!7.46!NCOA2;;chr2:231084659..231084721,-!p1@SP110!0.71!110.26!SP110;;chr4:109089290..109089320,-!p14@LEF1!0.71!4.15!LEF1;;chr5:133451347..133451358,+!p3@TCF7!0.71!4.15!TCF7;;chr1:158979686..158979745,+!p1@IFI16!0.70!151.16!IFI16;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.53!FOXN3;;chr9:20622478..20622525,-!p1@MLLT3!0.70!36.20!MLLT3;;chr13:41240717..41240735,-!p2@FOXO1!0.70!31.23!FOXO1;;chr10:104154246..104154347,+!p3@NFKB2!0.70!27.64!NFKB2;;chr4:185395633..185395651,-!p2@IRF2!0.70!6.91!IRF2;;chr4:57522166..57522260,-!p2@HOPX!0.70!4.70!HOPX;;chr10:35484804..35484902,+!p2@CREM!0.69!16.86!CREM;;chr7:21467802..21467840,+!p3@SP4!0.69!8.84!SP4;;chr20:32274150..32274166,-!p2@E2F1!0.69!7.74!E2F1;;chr3:18466660..18466676,-!p5@SATB1!0.69!4.70!SATB1;;chr6:152011654..152011682,+!p1@ESR1!0.69!3.87!ESR1;;chr14:75988831..75988847,+!p2@BATF!0.69!3.87!BATF;;chr12:56415287..56415300,+!p5@IKZF4!0.69!3.87!IKZF4;;chr19:52674696..52674758,-!p1@ZNF836!0.68!12.44!ZNF836;;chr9:20621927..20621996,-!p3@MLLT3!0.68!6.91!MLLT3;;chr19:12405606..12405629,-!p2@ZNF44!0.66!7.74!ZNF44;;chr12:432372..432377,-!p3@KDM5A!0.66!6.08!KDM5A;;chr1:3569072..3569093,+!p1@TP73!0.66!3.59!TP73;;chr6:91006503..91006517,-!p3@BACH2!0.66!3.59!BACH2;;chr2:242556900..242556916,-!p6@THAP4!0.66!3.59!THAP4;;chr4:57522598..57522664,-!p3@HOPX!0.66!3.59!HOPX;;chr13:41240737..41240787,-!p1@FOXO1!0.65!48.64!FOXO1;;chr12:53614115..53614154,-!p1@RARG!0.65!21.56!RARG;;chr4:185395590..185395627,-!p3@IRF2!0.65!4.42!IRF2;;chr2:208394817..208394834,+!p3@CREB1!0.64!15.48!CREB1;;chr16:68118689..68118733,+!p3@NFATC3!0.64!9.67!NFATC3;;chr10:35415951..35415975,+!p8@CREM!0.64!4.97!CREM;;chr4:185395191..185395226,-!p4@IRF2!0.64!4.97!IRF2;;chr11:19263160..19263176,-!p1@E2F8!0.64!4.15!E2F8;;chr6:106546786..106546802,+!p6@PRDM1!0.64!3.32!PRDM1;;chr2:214014959..214015006,-!p4@IKZF2!0.64!3.32!IKZF2;;chr4:109086281..109086319,-!p9@LEF1!0.64!3.32!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.64!3.32!HOPX;;chr1:149858461..149858479,+!p1@BOLA1!0.63!1529.04!BOLA1;;chr19:9546177..9546224,-!p1@ZNF266!0.63!27.08!ZNF266;;chr17:46622205..46622218,-!p3@HOXB2!0.63!3.87!HOXB2;;chr17:61920280..61920343,-!p2@SMARCD2!0.62!36.20!SMARCD2;;chr14:74226961..74227020,-!p1@C14orf43!0.62!24.87!C14orf43;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.75!ETS1;;chr4:103422499..103422632,+!p1@NFKB1!0.61!77.38!NFKB1;;chr11:67007548..67007610,+!p3@KDM2A!0.61!27.08!KDM2A;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.21!HIC1;;chr6:143266297..143266356,-!p1@HIVEP2!0.61!17.69!HIVEP2;;chr11:113930291..113930339,+!p2@ZBTB16!0.61!5.53!ZBTB16;;chr8:60031534..60031553,-!p8@TOX!0.61!3.04!TOX;;chr3:18465604..18465618,-!p9@SATB1!0.61!3.04!SATB1;;chr4:109088130..109088163,-!p13@LEF1!0.61!3.04!LEF1;;chr21:36421347..36421380,-!p8@RUNX1!0.61!3.04!RUNX1;;chr15:31619326..31619390,+!p2@KLF13!0.60!41.73!KLF13;;chr6:20402102..20402152,+!p1@E2F3!0.60!14.37!E2F3;;chr17:46621937..46621966,-!p2@HOXB2!0.60!9.40!HOXB2;;chr13:74708475..74708499,-!p5@KLF12!0.60!7.74!KLF12;;chr14:73360799..73360817,-!p1@DPF3!0.59!11.88!DPF3;;chr10:35416142..35416169,+!p3@CREM!0.59!8.84!CREM;;chr16:68119440..68119480,+!p4@NFATC3!0.59!5.25!NFATC3;;chr6:135502501..135502546,+!p1@MYB!0.59!3.59!MYB;;chr15:31619013..31619095,+!p1@KLF13!0.58!81.25!KLF13;;chr2:97202480..97202499,+!p1@ARID5A!0.58!35.10!ARID5A;;chr15:74833584..74833626,+!p1@ARID3B!0.58!7.46!ARID3B;;chr19:35455110..35455149,-!p1@ZNF792!0.58!6.08!ZNF792;;chr2:242556880..242556899,-!p5@THAP4!0.58!2.76!THAP4;;chr3:71542747..71542766,-!p34@FOXP1!0.58!2.76!FOXP1;;chr7:50344144..50344157,+!p6@IKZF1!0.58!2.76!IKZF1;;chrY:21906761..21906810,-!p2@KDM5D!0.58!2.76!KDM5D;;chr1:249132410..249132456,+!p1@ZNF672!0.57!24.87!ZNF672;;chr2:238600933..238600985,+!p3@LRRFIP1!0.57!17.96!LRRFIP1;;chr16:89787973..89788001,+!p3@ZNF276!0.57!5.80!ZNF276;;chr12:46123273..46123329,+!p3@ARID2!0.57!5.25!ARID2;;chr9:86593238..86593252,-!p3@HNRNPK!0.57!4.42!HNRPK;;chr3:187463179..187463201,-!p2@BCL6!0.56!12.99!BCL6;;chrX:101186981..101187030,-!p1@ZMAT1!0.56!10.22!ZMAT1;;chr14:65569101..65569119,-!p3@MAX!0.56!9.95!MAX;;chr16:8962544..8962584,-!p2@CARHSP1!0.56!6.91!CARHSP1;;chr1:211432887..211432903,+!p4@RCOR3!0.56!6.91!RCOR3;;chr7:99156393..99156433,+!p6@ZNF655!0.56!6.91!ZNF655;;chr20:44600199..44600219,-!p3@ZNF335!0.56!3.87!ZNF335;;chr6:31126291..31126399,+!p1@TCF19!0.55!30.12!TCF19;;chr16:71918033..71918101,-!p1@ZNF821!0.55!11.61!ZNF821;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:90544532..90544563,+!p1@ZNF710!0.55!5.80!ZNF710;;chr6:45390300..45390335,+!p4@RUNX2!0.55!4.42!RUNX2;;chr9:32550965..32551031,-!p4@TOPORS!0.55!4.42!TOPORS;;chr6:91006575..91006602,-!p2@BACH2!0.55!4.15!BACH2;;chr19:49140609..49140643,-!p1@DBP!0.54!17.41!DBP;;chr19:56111680..56111716,+!p1@ZNF524!0.54!11.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2.49!ZNF644;;chr1:211433151..211433191,+!p5@RCOR3!0.20!2.21!RCOR3;;chr19:45004584..45004601,-!p2@ZNF180!0.20!1.93!ZNF180;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.93!ZNF692;;chr9:128509635..128509658,+!p2@PBX3!0.20!1.93!PBX3;;chr8:123793959..123793977,+!p4@ZHX2!0.20!1.93!ZHX2;;chr3:150126440..150126455,+!p9@TSC22D2!0.20!1.38!TSC22D2;;chr3:71632743..71632756,-!p16@FOXP1!0.20!1.38!FOXP1;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.38!ZNF764;;chr6:15249097..15249115,+!p7@JARID2!0.20!1.11!JARID2;;chr6:157099387..157099403,+!p8@ARID1B!0.20!1.11!ARID1B;;chr7:27835758..27835772,+!p3@TAX1BP1!0.20!1.11!TAX1BP1;;chrX:129402754..129402766,-!p3@ZNF280C!0.20!1.11!ZNF280C;;chr17:38497662..38497713,+!p4@RARA!0.20!0.83!RARA;;chr19:19779686..19779697,+!p3@ZNF101!0.20!0.83!ZNF101;;chr19:24269971..24269980,+!p6@ZNF254!0.20!0.83!ZNF254;;chr10:35416125..35416138,+!p10@CREM!0.20!0.83!CREM;;chr7:127032296..127032317,-!p4@ZNF800!0.20!0.83!ZNF800;;chr2:70314601..70314622,+!p1@PCBP1!0.19!325.54!PCBP1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.14!PCBP4;;chr17:7590797..7590815,-!p1@TP53!0.19!60.24!TP53;;chr19:10305581..10305646,-!p1@DNMT1!0.19!48.36!DNMT1;;chr17:56065540..56065627,-!p1@VEZF1!0.19!43.11!VEZF1;;chr8:41909496..41909512,-!p1@KAT6A!0.19!41.73!KAT6A;;chr1:22778337..22778356,+!p1@ZBTB40!0.19!16.30!ZBTB40;;chr20:62601243..62601291,-!p1@ZNF512B!0.19!13.26!ZNF512B;;chr12:51566849..51566927,-!p1@TFCP2!0.19!11.33!TFCP2;;chr1:8877692..8877732,-!p1@RERE!0.19!10.78!RERE;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.19!10.22!ZNF319;;chr17:33288552..33288598,+!p1@ZNF830!0.19!10.22!ZNF830;;chr9:99540335..99540388,-!p1@ZNF510!0.19!9.67!ZNF510;;chr7:148936732..148936761,+!p1@ZNF212!0.19!9.12!ZNF212;;chr9:125667518..125667588,-!p1@RC3H2!0.19!8.57!RC3H2;;chr8:135725249..135725292,-!p1@ZFAT!0.19!8.29!ZFAT;;chr19:57831829..57831890,+!p1@ZNF543!0.19!8.01!ZNF543;;chr4:2263861..2263883,-!p2@MXD4!0.19!7.74!MXD4;;chr2:178257401..178257432,-!p4@NFE2L2!0.19!7.19!NFE2L2;;chr16:3285144..3285191,-!p1@ZNF200!0.19!6.08!ZNF200;;chr3:71179746..71179783,-!p7@FOXP1!0.19!3.87!FOXP1;;chr1:8585945..8586056,-!p3@RERE!0.19!3.87!RERE;;chr8:28748099..28748141,+!p2@HMBOX1!0.19!3.59!HMBOX1;;chr6:109804367..109804402,-!p2@ZBTB24!0.19!3.32!ZBTB24;;chr1:27022839..27022890,+!p3@ARID1A!0.19!3.32!ARID1A;;chr1:78444714..78444725,-!p3@FUBP1!0.19!3.04!FUBP1;;chr19:12721790..12721810,+!p2@ZNF791!0.19!3.04!ZNF791;;chr19:37862054..37862110,+!p1@ZNF527!0.19!3.04!ZNF527;;chr16:3185125..3185173,+!p1@ZNF213!0.19!2.76!ZNF213;;chr2:174830043..174830071,-!p6@SP3!0.19!2.21!SP3;;chr19:57752200..57752254,+!p3@ZNF805!0.19!1.93!ZNF805;;chr6:42419043..42419087,-!p2@TRERF1!0.19!1.93!TRERF1;;chr3:178789648..178789661,-!p4@ZMAT3!0.19!1.38!ZMAT3;;chr20:42143136..42143161,+!p3@L3MBTL1!0.19!1.38!L3MBTL;;chr12:8185346..8185360,+!p2@FOXJ2!0.19!1.38!FOXJ2;;chr7:21467746..21467758,+!p4@SP4!0.19!1.11!SP4;;chr9:99180662..99180690,-!p2@ZNF367!0.19!1.11!ZNF367;;chr19:18391652..18391669,-!p8@JUND!0.19!1.11!JUND;;chr1:158979680..158979683,+!p9@IFI16!0.19!1.11!IFI16;;chr1:45805735..45805743,+!p7@TOE1!0.19!0.83!TOE1;;chr11:130184623..130184634,-!p6@ZBTB44!0.19!0.83!ZBTB44;;chr13:41556186..41556208,-!p12@ELF1!0.19!0.83!ELF1;;chr10:104154415..104154434,+!p5@NFKB2!0.19!0.55!NFKB2;;chr10:135121763..135121783,+!p5@ZNF511!0.19!0.55!ZNF511;;chr10:35416172..35416184,+!p13@CREM!0.19!0.55!CREM;;chr11:128391908..128391913,-!p18@ETS1!0.19!0.55!ETS1;;chr11:128392258..128392264,-!p7@ETS1!0.19!0.55!ETS1;;chr12:103352277..103352324,+!p2@ASCL1!0.19!0.55!ASCL1;;chr12:48277143..48277154,-!p10@VDR!0.19!0.55!VDR;;chr12:69753583..69753598,+!p2@YEATS4!0.19!0.55!YEATS4;;chr12:72056897..72056908,+!p12@THAP2!0.19!0.55!THAP2;;chr12:95467222..95467233,-!p3@NR2C1!0.19!0.55!NR2C1;;chr13:41593392..41593403,-!p7@ELF1!0.19!0.55!ELF1;;
|expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.22!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.12!GATA3;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.99!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.61!48.08!GATA3;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.94!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.54!IKZF1;;chr17:1959369..1959388,+!p2@HIC1!1.52!82.91!HIC1;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.60!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.45!27.36!SP140;;chr6:391743..391759,+!p1@IRF4!1.44!26.81!IRF4;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.82!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.70!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.42!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.11!AKNA;;chr8:60031619..60031676,-!p1@TOX!1.40!51.40!TOX;;chr1:92951607..92951661,-!p1@GFI1!1.40!24.32!GFI1;;chr5:133450365..133450444,+!p1@TCF7!1.37!98.66!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.73!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.33!26.81!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.32!86.50!NFATC3;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.34!KDM5D;;chr7:50348268..50348366,+!p4@IKZF1!1.29!18.52!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.28!17.96!ZBP1;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.75!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.54!BACH2;;chr14:99738138..99738163,-!p1@BCL11B!1.19!14.37!BCL11B;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.58!GATA3;;chr4:109087445..109087463,-!p1@LEF1!1.17!13.82!LEF1;;chr4:109089901..109089930,-!p3@LEF1!1.17!13.82!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.79!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.16!13.54!TCF7;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.36!PBX4;;chr20:56195525..56195556,-!p2@ZBP1!1.10!11.61!ZBP1;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.71!ELF1;;chr2:231090471..231090504,+!p2@SP140!0.99!8.84!SP140;;chr7:77428066..77428132,+!p2@PHTF2!0.97!55.27!PHTF2;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.29!JARID2;;chr17:45810594..45810608,+!p1@TBX21!0.95!8.01!TBX21;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.34!MXD3;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.74!ARID5A;;chr4:109090075..109090095,-!p2@LEF1!0.94!7.74!LEF1;;chr19:16435625..16435682,+!p1@KLF2!0.93!251.20!KLF2;;chr20:52226313..52226350,-!p3@ZNF217!0.93!7.46!ZNF217;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.26!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.71!SATB1;;chr1:25256756..25256774,-!p1@RUNX3!0.91!13.82!RUNX3;;chr17:46621146..46621180,-!p10@HOXB2!0.91!7.19!HOXB2;;chr3:71007344..71007348,-!p6@FOXP1!0.90!29.29!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.98!RUNX1;;chr2:214015343..214015366,-!p3@IKZF2!0.90!6.91!IKZF2;;chr3:18480217..18480239,-!p3@SATB1!0.90!6.91!SATB1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.10!DDB2;;chr5:131826457..131826514,-!p1@IRF1!0.88!274.14!IRF1;;chr16:79634595..79634620,-!p2@MAF!0.88!12.44!MAF;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.63!IKZF4;;chr1:92949331..92949377,-!p2@GFI1!0.87!6.36!GFI1;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.36!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.85!218.87!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.85!16.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.61!E2F2;;chr3:71542684..71542720,-!p18@FOXP1!0.85!6.08!FOXP1;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.08!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.85!6.08!TOX;;chr14:99738059..99738086,-!p2@BCL11B!0.85!6.08!BCL11B;;chrX:49121165..49121179,-!p1@FOXP3!0.85!6.08!FOXP3;;chrX:134477924..134477988,-!p1@ZNF75D!0.84!23.77!ZNF75D;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.22!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.83!73.79!FLI1;;chr16:79634624..79634642,-!p1@MAF!0.83!24.04!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.83!7.46!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.80!ZFY;;chr5:321810..321877,+!p1@AHRR!0.82!18.79!AHRR;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.48!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.82!7.74!HOXB2;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.63!SNAI3;;chr11:113930425..113930471,+!p1@ZBTB16!0.81!8.01!ZBTB16;;chr3:18487057..18487105,-!p4@SATB1!0.80!5.25!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.80!5.25!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!0.80!5.25!IKZF3;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.25!CREB3L2;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.67!JARID2;;chr7:128577972..128578047,+!p1@IRF5!0.79!8.57!IRF5;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.97!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.78!4.97!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.78!4.97!HSF5;;chr3:71179699..71179744,-!p2@FOXP1!0.76!38.97!FOXP1;;chr14:64970670..64970712,-!p3@ZBTB25!0.76!11.05!ZBTB25;;chr4:109089996..109090012,-!p5@LEF1!0.76!4.70!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!0.76!4.70!BCL11B;;chr15:60884706..60884743,-!p1@RORA!0.74!25.70!RORA;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!34.82!STAT5A;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.92!ZBTB25;;chr2:148778973..148779035,+!p3@MBD5!0.73!12.44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2.49!ZNF644;;chr1:211433151..211433191,+!p5@RCOR3!0.20!2.21!RCOR3;;chr19:45004584..45004601,-!p2@ZNF180!0.20!1.93!ZNF180;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.93!ZNF692;;chr9:128509635..128509658,+!p2@PBX3!0.20!1.93!PBX3;;chr8:123793959..123793977,+!p4@ZHX2!0.20!1.93!ZHX2;;chr3:150126440..150126455,+!p9@TSC22D2!0.20!1.38!TSC22D2;;chr3:71632743..71632756,-!p16@FOXP1!0.20!1.38!FOXP1;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.38!ZNF764;;chr6:15249097..15249115,+!p7@JARID2!0.20!1.11!JARID2;;chr6:157099387..157099403,+!p8@ARID1B!0.20!1.11!ARID1B;;chr7:27835758..27835772,+!p3@TAX1BP1!0.20!1.11!TAX1BP1;;chrX:129402754..129402766,-!p3@ZNF280C!0.20!1.11!ZNF280C;;chr17:38497662..38497713,+!p4@RARA!0.20!0.83!RARA;;chr19:19779686..19779697,+!p3@ZNF101!0.20!0.83!ZNF101;;chr19:24269971..24269980,+!p6@ZNF254!0.20!0.83!ZNF254;;chr10:35416125..35416138,+!p10@CREM!0.20!0.83!CREM;;chr7:127032296..127032317,-!p4@ZNF800!0.20!0.83!ZNF800;;chr2:70314601..70314622,+!p1@PCBP1!0.19!325.54!PCBP1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.14!PCBP4;;chr17:7590797..7590815,-!p1@TP53!0.19!60.24!TP53;;chr19:10305581..10305646,-!p1@DNMT1!0.19!48.36!DNMT1;;chr17:56065540..56065627,-!p1@VEZF1!0.19!43.11!VEZF1;;chr8:41909496..41909512,-!p1@KAT6A!0.19!41.73!KAT6A;;chr1:22778337..22778356,+!p1@ZBTB40!0.19!16.30!ZBTB40;;chr20:62601243..62601291,-!p1@ZNF512B!0.19!13.26!ZNF512B;;chr12:51566849..51566927,-!p1@TFCP2!0.19!11.33!TFCP2;;chr1:8877692..8877732,-!p1@RERE!0.19!10.78!RERE;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.19!10.22!ZNF319;;chr17:33288552..33288598,+!p1@ZNF830!0.19!10.22!ZNF830;;chr9:99540335..99540388,-!p1@ZNF510!0.19!9.67!ZNF510;;chr7:148936732..148936761,+!p1@ZNF212!0.19!9.12!ZNF212;;chr9:125667518..125667588,-!p1@RC3H2!0.19!8.57!RC3H2;;chr8:135725249..135725292,-!p1@ZFAT!0.19!8.29!ZFAT;;chr19:57831829..57831890,+!p1@ZNF543!0.19!8.01!ZNF543;;chr4:2263861..2263883,-!p2@MXD4!0.19!7.74!MXD4;;chr2:178257401..178257432,-!p4@NFE2L2!0.19!7.19!NFE2L2;;chr16:3285144..3285191,-!p1@ZNF200!0.19!6.08!ZNF200;;chr3:71179746..71179783,-!p7@FOXP1!0.19!3.87!FOXP1;;chr1:8585945..8586056,-!p3@RERE!0.19!3.87!RERE;;chr8:28748099..28748141,+!p2@HMBOX1!0.19!3.59!HMBOX1;;chr6:109804367..109804402,-!p2@ZBTB24!0.19!3.32!ZBTB24;;chr1:27022839..27022890,+!p3@ARID1A!0.19!3.32!ARID1A;;chr1:78444714..78444725,-!p3@FUBP1!0.19!3.04!FUBP1;;chr19:12721790..12721810,+!p2@ZNF791!0.19!3.04!ZNF791;;chr19:37862054..37862110,+!p1@ZNF527!0.19!3.04!ZNF527;;chr16:3185125..3185173,+!p1@ZNF213!0.19!2.76!ZNF213;;chr2:174830043..174830071,-!p6@SP3!0.19!2.21!SP3;;chr19:57752200..57752254,+!p3@ZNF805!0.19!1.93!ZNF805;;chr6:42419043..42419087,-!p2@TRERF1!0.19!1.93!TRERF1;;chr3:178789648..178789661,-!p4@ZMAT3!0.19!1.38!ZMAT3;;chr20:42143136..42143161,+!p3@L3MBTL1!0.19!1.38!L3MBTL;;chr12:8185346..8185360,+!p2@FOXJ2!0.19!1.38!FOXJ2;;chr7:21467746..21467758,+!p4@SP4!0.19!1.11!SP4;;chr9:99180662..99180690,-!p2@ZNF367!0.19!1.11!ZNF367;;chr19:18391652..18391669,-!p8@JUND!0.19!1.11!JUND;;chr1:158979680..158979683,+!p9@IFI16!0.19!1.11!IFI16;;chr1:45805735..45805743,+!p7@TOE1!0.19!0.83!TOE1;;chr11:130184623..130184634,-!p6@ZBTB44!0.19!0.83!ZBTB44;;chr13:41556186..41556208,-!p12@ELF1!0.19!0.83!ELF1;;chr10:104154415..104154434,+!p5@NFKB2!0.19!0.55!NFKB2;;chr10:135121763..135121783,+!p5@ZNF511!0.19!0.55!ZNF511;;chr10:35416172..35416184,+!p13@CREM!0.19!0.55!CREM;;chr11:128391908..128391913,-!p18@ETS1!0.19!0.55!ETS1;;chr11:128392258..128392264,-!p7@ETS1!0.19!0.55!ETS1;;chr12:103352277..103352324,+!p2@ASCL1!0.19!0.55!ASCL1;;chr12:48277143..48277154,-!p10@VDR!0.19!0.55!VDR;;chr12:69753583..69753598,+!p2@YEATS4!0.19!0.55!YEATS4;;chr12:72056897..72056908,+!p12@THAP2!0.19!0.55!THAP2;;chr12:95467222..95467233,-!p3@NR2C1!0.19!0.55!NR2C1;;chr13:41593392..41593403,-!p7@ELF1!0.19!0.55!ELF1;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.ctss.bed.gz
|id=FF:11917-125G9
|id=FF:11917-125G9
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs13814
|library_id_phase_based=2:CNhs13814
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11917
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11917
|name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3
|name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3
|namespace=
|namespace=
Line 45: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
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Line 58: Line 78:
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|sample_cell_line=
Line 79: Line 100:
|top_motifs=CDX1,2,4:3.11001094298;PAX4:2.24567056145;ZBTB16:2.06882886046;ELF1,2,4:1.99669613662;FOXP1:1.98069459248;IKZF2:1.97929463858;PAX3,7:1.83143189526;PITX1..3:1.81613952657;RUNX1..3:1.74351701807;NKX6-1,2:1.71357003498;TLX2:1.49197283798;POU1F1:1.43563262123;ETS1,2:1.39867365457;STAT1,3:1.2723543365;DMAP1_NCOR{1,2}_SMARC:1.27220492024;PDX1:1.15120933888;SPI1:1.14044712124;POU2F1..3:1.13756097294;TOPORS:1.07767323404;NKX3-1:1.02916555776;IRF1,2:1.01044144149;E2F1..5:0.992994841053;ELK1,4_GABP{A,B1}:0.979362537235;SPZ1:0.954752207834;PBX1:0.947806144289;NKX2-2,8:0.904170133495;RORA:0.87171974374;NKX2-1,4:0.845062640551;SPIB:0.838072080264;BREu{core}:0.742175412985;GATA6:0.710304527092;FOXO1,3,4:0.6554146712;YY1:0.646273417029;HOX{A6,A7,B6,B7}:0.630240929396;NANOG{mouse}:0.62289444935;TGIF1:0.605078344644;NFY{A,B,C}:0.562389491849;FOX{F1,F2,J1}:0.472325442893;ALX1:0.456495635592;BPTF:0.453554675956;AIRE:0.452055307798;FOX{I1,J2}:0.386005280518;LEF1_TCF7_TCF7L1,2:0.385954286243;FOX{D1,D2}:0.37008928713;FOXD3:0.336179469647;IRF7:0.328184768762;SOX5:0.3187559866;T:0.311811686534;RXRA_VDR{dimer}:0.25099675304;SNAI1..3:0.245135520067;OCT4_SOX2{dimer}:0.238137765252;CRX:0.198261457519;PAX6:0.193503691512;CREB1:0.180382742625;NFKB1_REL_RELA:0.180113713963;ZEB1:0.172584943493;MYOD1:0.136496045273;ATF5_CREB3:0.127950348461;MYB:0.109876270095;LMO2:0.0977499222588;STAT2,4,6:0.0890508075616;GFI1:0.0850977168369;POU3F1..4:0.0717969268294;NR5A1,2:0.061168449013;ATF6:0.0522310474888;FOXN1:0.0503205885551;NRF1:0.0453360708909;HAND1,2:0.0281572156595;PAX2:-0.00594804360111;FOXQ1:-0.0183270777757;HES1:-0.0445224668777;NR3C1:-0.0450826036895;FOXM1:-0.0595347419552;CUX2:-0.0622594499862;SREBF1,2:-0.0645757340713;HNF4A_NR2F1,2:-0.0859648393475;GCM1,2:-0.0893141070322;EVI1:-0.093912405077;ZNF143:-0.101732661089;AR:-0.109832898838;FOXA2:-0.126651266807;NFIL3:-0.159022292042;TFDP1:-0.223816588189;NFE2L1:-0.273335384181;DBP:-0.280221552958;ATF4:-0.290801805517;SOX{8,9,10}:-0.300820134186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.318233387138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324735705239;AHR_ARNT_ARNT2:-0.328573746415;ZNF384:-0.334037220631;RFX2..5_RFXANK_RFXAP:-0.338792877308;STAT5{A,B}:-0.340714180584;HNF1A:-0.345182732721;HBP1_HMGB_SSRP1_UBTF:-0.345607848979;PAX8:-0.384956617103;SMAD1..7,9:-0.40304937948;NR1H4:-0.416563242358;JUN:-0.41757495625;GLI1..3:-0.424581128536;POU5F1:-0.43275589882;MYFfamily:-0.451892699804;RREB1:-0.458738065895;PRRX1,2:-0.461405448761;ATF2:-0.463838265069;ARID5B:-0.475603194238;NR6A1:-0.506771949522;HMX1:-0.527818714065;TP53:-0.557682912279;REST:-0.558234104763;TAL1_TCF{3,4,12}:-0.560134624293;NKX2-3_NKX2-5:-0.574494811374;NFATC1..3:-0.578242320309;ZNF148:-0.593035825082;SOX2:-0.59610098444;UFEwm:-0.599478695326;BACH2:-0.613319196495;CEBPA,B_DDIT3:-0.643153631689;SRF:-0.651002431067;EP300:-0.65704282654;FOXP3:-0.673996940863;ESR1:-0.681760756077;VSX1,2:-0.706351507603;ADNP_IRX_SIX_ZHX:-0.713487483384;ZNF238:-0.726934043441;PAX5:-0.727612733488;FOXL1:-0.745307415688;FOS_FOS{B,L1}_JUN{B,D}:-0.749233947189;TFAP4:-0.749442710679;CDC5L:-0.755637137949;ONECUT1,2:-0.763760493053;PPARG:-0.799562167712;NFE2:-0.812871405998;XCPE1{core}:-0.839655247377;MEF2{A,B,C,D}:-0.846061799344;HOXA9_MEIS1:-0.890922201911;MYBL2:-0.906169067591;EBF1:-0.914248311307;MED-1{core}:-0.932500425547;LHX3,4:-0.944473796622;ZFP161:-0.952750079969;HLF:-0.953157039253;FOSL2:-0.955523451731;MZF1:-0.971246562293;ALX4:-0.971955540351;TFCP2:-0.985014973194;RFX1:-0.985416416266;ZBTB6:-1.01330889874;EGR1..3:-1.01816939362;NFE2L2:-1.0301299113;NHLH1,2:-1.07361048123;PRDM1:-1.08179661201;SOX17:-1.0867782265;KLF4:-1.11585844216;ZNF423:-1.11960788867;bHLH_family:-1.12129077196;HIF1A:-1.12774722243;NANOG:-1.16110799894;TFAP2B:-1.16859003666;HIC1:-1.17519523581;POU6F1:-1.18198448797;HMGA1,2:-1.22265270572;GFI1B:-1.23314234608;GATA4:-1.24098725675;RBPJ:-1.24467086628;MTE{core}:-1.34840712545;NFIX:-1.36142140949;HOX{A4,D4}:-1.39938057426;MTF1:-1.40348774571;TEF:-1.42335028749;PATZ1:-1.44398686591;MAZ:-1.45261036449;TBX4,5:-1.4626081507;TBP:-1.47651277618;GZF1:-1.48479481773;GTF2I:-1.48957880873;GTF2A1,2:-1.50924049376;ESRRA:-1.52819434933;HSF1,2:-1.54115646063;MAFB:-1.58442779884;TFAP2{A,C}:-1.58581815647;PAX1,9:-1.60029227199;TEAD1:-1.63079560987;HOX{A5,B5}:-1.65898643318;RXR{A,B,G}:-1.6650163034;EN1,2:-1.73255511564;XBP1:-1.74976470712;ZIC1..3:-1.80225854276;SP1:-1.84249074056;IKZF1:-1.84738015723;NKX3-2:-1.93512863669;TLX1..3_NFIC{dimer}:-2.00325198928
|top_motifs=CDX1,2,4:3.11001094298;PAX4:2.24567056145;ZBTB16:2.06882886046;ELF1,2,4:1.99669613662;FOXP1:1.98069459248;IKZF2:1.97929463858;PAX3,7:1.83143189526;PITX1..3:1.81613952657;RUNX1..3:1.74351701807;NKX6-1,2:1.71357003498;TLX2:1.49197283798;POU1F1:1.43563262123;ETS1,2:1.39867365457;STAT1,3:1.2723543365;DMAP1_NCOR{1,2}_SMARC:1.27220492024;PDX1:1.15120933888;SPI1:1.14044712124;POU2F1..3:1.13756097294;TOPORS:1.07767323404;NKX3-1:1.02916555776;IRF1,2:1.01044144149;E2F1..5:0.992994841053;ELK1,4_GABP{A,B1}:0.979362537235;SPZ1:0.954752207834;PBX1:0.947806144289;NKX2-2,8:0.904170133495;RORA:0.87171974374;NKX2-1,4:0.845062640551;SPIB:0.838072080264;BREu{core}:0.742175412985;GATA6:0.710304527092;FOXO1,3,4:0.6554146712;YY1:0.646273417029;HOX{A6,A7,B6,B7}:0.630240929396;NANOG{mouse}:0.62289444935;TGIF1:0.605078344644;NFY{A,B,C}:0.562389491849;FOX{F1,F2,J1}:0.472325442893;ALX1:0.456495635592;BPTF:0.453554675956;AIRE:0.452055307798;FOX{I1,J2}:0.386005280518;LEF1_TCF7_TCF7L1,2:0.385954286243;FOX{D1,D2}:0.37008928713;FOXD3:0.336179469647;IRF7:0.328184768762;SOX5:0.3187559866;T:0.311811686534;RXRA_VDR{dimer}:0.25099675304;SNAI1..3:0.245135520067;OCT4_SOX2{dimer}:0.238137765252;CRX:0.198261457519;PAX6:0.193503691512;CREB1:0.180382742625;NFKB1_REL_RELA:0.180113713963;ZEB1:0.172584943493;MYOD1:0.136496045273;ATF5_CREB3:0.127950348461;MYB:0.109876270095;LMO2:0.0977499222588;STAT2,4,6:0.0890508075616;GFI1:0.0850977168369;POU3F1..4:0.0717969268294;NR5A1,2:0.061168449013;ATF6:0.0522310474888;FOXN1:0.0503205885551;NRF1:0.0453360708909;HAND1,2:0.0281572156595;PAX2:-0.00594804360111;FOXQ1:-0.0183270777757;HES1:-0.0445224668777;NR3C1:-0.0450826036895;FOXM1:-0.0595347419552;CUX2:-0.0622594499862;SREBF1,2:-0.0645757340713;HNF4A_NR2F1,2:-0.0859648393475;GCM1,2:-0.0893141070322;EVI1:-0.093912405077;ZNF143:-0.101732661089;AR:-0.109832898838;FOXA2:-0.126651266807;NFIL3:-0.159022292042;TFDP1:-0.223816588189;NFE2L1:-0.273335384181;DBP:-0.280221552958;ATF4:-0.290801805517;SOX{8,9,10}:-0.300820134186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.318233387138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324735705239;AHR_ARNT_ARNT2:-0.328573746415;ZNF384:-0.334037220631;RFX2..5_RFXANK_RFXAP:-0.338792877308;STAT5{A,B}:-0.340714180584;HNF1A:-0.345182732721;HBP1_HMGB_SSRP1_UBTF:-0.345607848979;PAX8:-0.384956617103;SMAD1..7,9:-0.40304937948;NR1H4:-0.416563242358;JUN:-0.41757495625;GLI1..3:-0.424581128536;POU5F1:-0.43275589882;MYFfamily:-0.451892699804;RREB1:-0.458738065895;PRRX1,2:-0.461405448761;ATF2:-0.463838265069;ARID5B:-0.475603194238;NR6A1:-0.506771949522;HMX1:-0.527818714065;TP53:-0.557682912279;REST:-0.558234104763;TAL1_TCF{3,4,12}:-0.560134624293;NKX2-3_NKX2-5:-0.574494811374;NFATC1..3:-0.578242320309;ZNF148:-0.593035825082;SOX2:-0.59610098444;UFEwm:-0.599478695326;BACH2:-0.613319196495;CEBPA,B_DDIT3:-0.643153631689;SRF:-0.651002431067;EP300:-0.65704282654;FOXP3:-0.673996940863;ESR1:-0.681760756077;VSX1,2:-0.706351507603;ADNP_IRX_SIX_ZHX:-0.713487483384;ZNF238:-0.726934043441;PAX5:-0.727612733488;FOXL1:-0.745307415688;FOS_FOS{B,L1}_JUN{B,D}:-0.749233947189;TFAP4:-0.749442710679;CDC5L:-0.755637137949;ONECUT1,2:-0.763760493053;PPARG:-0.799562167712;NFE2:-0.812871405998;XCPE1{core}:-0.839655247377;MEF2{A,B,C,D}:-0.846061799344;HOXA9_MEIS1:-0.890922201911;MYBL2:-0.906169067591;EBF1:-0.914248311307;MED-1{core}:-0.932500425547;LHX3,4:-0.944473796622;ZFP161:-0.952750079969;HLF:-0.953157039253;FOSL2:-0.955523451731;MZF1:-0.971246562293;ALX4:-0.971955540351;TFCP2:-0.985014973194;RFX1:-0.985416416266;ZBTB6:-1.01330889874;EGR1..3:-1.01816939362;NFE2L2:-1.0301299113;NHLH1,2:-1.07361048123;PRDM1:-1.08179661201;SOX17:-1.0867782265;KLF4:-1.11585844216;ZNF423:-1.11960788867;bHLH_family:-1.12129077196;HIF1A:-1.12774722243;NANOG:-1.16110799894;TFAP2B:-1.16859003666;HIC1:-1.17519523581;POU6F1:-1.18198448797;HMGA1,2:-1.22265270572;GFI1B:-1.23314234608;GATA4:-1.24098725675;RBPJ:-1.24467086628;MTE{core}:-1.34840712545;NFIX:-1.36142140949;HOX{A4,D4}:-1.39938057426;MTF1:-1.40348774571;TEF:-1.42335028749;PATZ1:-1.44398686591;MAZ:-1.45261036449;TBX4,5:-1.4626081507;TBP:-1.47651277618;GZF1:-1.48479481773;GTF2I:-1.48957880873;GTF2A1,2:-1.50924049376;ESRRA:-1.52819434933;HSF1,2:-1.54115646063;MAFB:-1.58442779884;TFAP2{A,C}:-1.58581815647;PAX1,9:-1.60029227199;TEAD1:-1.63079560987;HOX{A5,B5}:-1.65898643318;RXR{A,B,G}:-1.6650163034;EN1,2:-1.73255511564;XBP1:-1.74976470712;ZIC1..3:-1.80225854276;SP1:-1.84249074056;IKZF1:-1.84738015723;NKX3-2:-1.93512863669;TLX1..3_NFIC{dimer}:-2.00325198928
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11917-125G9;search_select_hide=table117:FF:11917-125G9
}}
}}

Latest revision as of 18:29, 4 June 2020

Name:CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13814
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number61-62
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005705
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13814 CAGE DRX008189 DRR009061
Accession ID Hg19

Library idBAMCTSS
CNhs13814 DRZ000486 DRZ001871
Accession ID Hg38

Library idBAMCTSS
CNhs13814 DRZ011836 DRZ013221
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.106
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0837
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.285
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.106
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.106
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0874
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.281
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.734
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.142
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.106
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.151
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.106
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.756
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.876
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.603
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.351
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.377
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.5
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.377
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.106
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.323
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.246
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.191
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.974
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.867
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13814

Jaspar motifP-value
MA0002.24.95159e-6
MA0003.10.903
MA0004.10.862
MA0006.10.447
MA0007.10.874
MA0009.10.541
MA0014.10.687
MA0017.10.335
MA0018.20.596
MA0019.10.18
MA0024.10.0512
MA0025.10.129
MA0027.10.468
MA0028.11.49964e-4
MA0029.10.562
MA0030.10.274
MA0031.10.765
MA0035.20.21
MA0038.10.063
MA0039.20.603
MA0040.10.236
MA0041.10.197
MA0042.10.437
MA0043.10.107
MA0046.10.0454
MA0047.20.933
MA0048.10.675
MA0050.13.31302e-6
MA0051.10.0342
MA0052.10.0124
MA0055.10.518
MA0057.10.855
MA0058.10.964
MA0059.10.282
MA0060.10.987
MA0061.10.0583
MA0062.28.86034e-12
MA0065.20.0432
MA0066.10.488
MA0067.10.885
MA0068.10.916
MA0069.10.856
MA0070.10.509
MA0071.10.592
MA0072.10.928
MA0073.10.773
MA0074.10.777
MA0076.16.07993e-6
MA0077.10.0501
MA0078.10.737
MA0079.20.393
MA0080.21.20144e-10
MA0081.10.0484
MA0083.10.041
MA0084.10.667
MA0087.10.369
MA0088.10.0633
MA0090.16.2363e-4
MA0091.10.954
MA0092.10.635
MA0093.10.799
MA0099.25.22055e-6
MA0100.10.704
MA0101.10.817
MA0102.20.365
MA0103.10.0753
MA0104.20.19
MA0105.12.1504e-5
MA0106.10.902
MA0107.10.385
MA0108.21.09637e-10
MA0111.10.0663
MA0112.20.128
MA0113.10.849
MA0114.10.251
MA0115.10.608
MA0116.19.14898e-5
MA0117.10.858
MA0119.10.751
MA0122.10.829
MA0124.10.379
MA0125.10.343
MA0131.10.2
MA0135.10.029
MA0136.17.38462e-19
MA0137.20.711
MA0138.20.438
MA0139.10.0204
MA0140.10.334
MA0141.10.562
MA0142.10.207
MA0143.10.099
MA0144.10.944
MA0145.10.43
MA0146.10.0892
MA0147.10.157
MA0148.10.532
MA0149.10.0622
MA0150.10.161
MA0152.10.0192
MA0153.10.0937
MA0154.10.0369
MA0155.10.709
MA0156.11.36055e-14
MA0157.10.364
MA0159.10.47
MA0160.10.639
MA0162.10.729
MA0163.13.68479e-12
MA0164.10.826
MA0258.10.0358
MA0259.10.412



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13814

Novel motifP-value
10.0806
100.00508
1000.469
1010.0952
1020.473
1030.799
1040.589
1050.255
1060.41
1070.462
1080.846
1090.108
110.0398
1100.395
1110.27
1120.285
1130.318
1140.439
1150.27
1160.515
1170.00407
1180.357
1190.551
120.581
1200.782
1210.964
1220.669
1236.73911e-7
1240.334
1250.948
1260.463
1270.725
1280.751
1290.339
130.469
1300.659
1310.62
1320.61
1330.364
1340.668
1350.837
1360.721
1370.243
1380.317
1390.194
140.491
1400.019
1410.539
1420.701
1430.00451
1440.442
1450.135
1460.662
1470.216
1480.0613
1490.868
150.273
1500.603
1510.542
1520.339
1530.932
1540.496
1550.0623
1560.851
1570.19
1580.22
1590.505
160.729
1600.287
1610.168
1620.447
1630.287
1640.0628
1650.642
1660.78
1670.139
1680.628
1690.344
170.915
180.981
190.645
20.912
200.522
210.168
220.834
230.504
240.932
250.0669
260.0335
270.239
280.712
290.0148
30.0389
300.08
310.991
320.526
330.643
340.938
350.224
360.0188
370.297
380.544
390.36
40.968
400.289
410.74
420.0931
430.397
440.502
450.412
460.11
470.0163
480.0469
490.0982
50.795
501
510.716
520.347
530.117
540.794
550.595
560.4
570.177
580.0814
590.422
60.394
600.496
610.128
620.0538
630.357
640.154
650.787
660.672
670.515
680.958
690.986
70.238
700.111
710.0308
720.17
730.546
740.538
750.0125
760.195
770.41
780.0155
790.499
80.432
800.248
810.343
820.0926
830.407
840.0336
850.702
860.248
870.663
880.796
890.237
90.871
900.049
910.274
920.451
930.309
940.144
950.0121
960.176
970.239
980.402
990.367



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13814


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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