FF:10829-111D1: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	acute myeloid leukemia (FAB M3) cell line:HL60
Species:	Human (Homo sapiens)
Library ID:	CNhs13055
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	unknown
cell type	myeloid progenitor cell
cell line	HL60
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005556

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13055		CAGE		DRX007806		DRR008678

Accession ID Hg19

Library id		BAM		CTSS
CNhs13055		DRZ000103		DRZ001488

Accession ID Hg38

Library id		BAM		CTSS
CNhs13055		DRZ011453		DRZ012838

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.237
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.56
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0951
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.244
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.17
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	1.02
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0632
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.499
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.27
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.065
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.557
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.143
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0.0632
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.211
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13055

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0085
MA0003.1	MA0003.1	0.943
MA0004.1	MA0004.1	0.0106
MA0006.1	MA0006.1	0.152
MA0007.1	MA0007.1	0.927
MA0009.1	MA0009.1	0.279
MA0014.1	MA0014.1	0.676
MA0017.1	MA0017.1	0.0319
MA0018.2	MA0018.2	0.0178
MA0019.1	MA0019.1	0.109
MA0024.1	MA0024.1	0.0013
MA0025.1	MA0025.1	0.996
MA0027.1	MA0027.1	0.1
MA0028.1	MA0028.1	0.00102
MA0029.1	MA0029.1	0.396
MA0030.1	MA0030.1	0.0176
MA0031.1	MA0031.1	0.129
MA0035.2	MA0035.2	0.231
MA0038.1	MA0038.1	2.83812e-4
MA0039.2	MA0039.2	0.0997
MA0040.1	MA0040.1	0.21
MA0041.1	MA0041.1	0.247
MA0042.1	MA0042.1	0.482
MA0043.1	MA0043.1	0.95
MA0046.1	MA0046.1	0.0866
MA0047.2	MA0047.2	0.992
MA0048.1	MA0048.1	0.299
MA0050.1	MA0050.1	4.34603e-4
MA0051.1	MA0051.1	0.00239
MA0052.1	MA0052.1	3.28593e-4
MA0055.1	MA0055.1	0.112
MA0057.1	MA0057.1	0.694
MA0058.1	MA0058.1	0.00374
MA0059.1	MA0059.1	5.10875e-6
MA0060.1	MA0060.1	0.4
MA0061.1	MA0061.1	0.592
MA0062.2	MA0062.2	7.45034e-7
MA0065.2	MA0065.2	0.00716
MA0066.1	MA0066.1	0.156
MA0067.1	MA0067.1	0.549
MA0068.1	MA0068.1	0.00442
MA0069.1	MA0069.1	0.979
MA0070.1	MA0070.1	0.53
MA0071.1	MA0071.1	0.0232
MA0072.1	MA0072.1	0.647
MA0073.1	MA0073.1	0.782
MA0074.1	MA0074.1	0.921
MA0076.1	MA0076.1	1.33856e-4
MA0077.1	MA0077.1	0.419
MA0078.1	MA0078.1	0.861
MA0079.2	MA0079.2	0.075
MA0080.2	MA0080.2	8.04026e-8
MA0081.1	MA0081.1	0.00825
MA0083.1	MA0083.1	6.45001e-4
MA0084.1	MA0084.1	0.536
MA0087.1	MA0087.1	0.169
MA0088.1	MA0088.1	0.00302
MA0090.1	MA0090.1	4.2372e-4
MA0091.1	MA0091.1	0.445
MA0092.1	MA0092.1	0.419
MA0093.1	MA0093.1	0.00821
MA0099.2	MA0099.2	0.00444
MA0100.1	MA0100.1	0.0128
MA0101.1	MA0101.1	0.486
MA0102.2	MA0102.2	0.988
MA0103.1	MA0103.1	0.114
MA0104.2	MA0104.2	7.36815e-6
MA0105.1	MA0105.1	0.00404
MA0106.1	MA0106.1	0.349
MA0107.1	MA0107.1	0.11
MA0108.2	MA0108.2	4.73348e-14
MA0111.1	MA0111.1	0.34
MA0112.2	MA0112.2	0.0197
MA0113.1	MA0113.1	0.777
MA0114.1	MA0114.1	0.038
MA0115.1	MA0115.1	0.0191
MA0116.1	MA0116.1	1.02551e-5
MA0117.1	MA0117.1	0.742
MA0119.1	MA0119.1	0.34
MA0122.1	MA0122.1	0.323
MA0124.1	MA0124.1	0.876
MA0125.1	MA0125.1	0.522
MA0131.1	MA0131.1	0.528
MA0135.1	MA0135.1	0.15
MA0136.1	MA0136.1	6.9421e-12
MA0137.2	MA0137.2	0.0291
MA0138.2	MA0138.2	0.494
MA0139.1	MA0139.1	0.3
MA0140.1	MA0140.1	0.115
MA0141.1	MA0141.1	0.00936
MA0142.1	MA0142.1	0.0815
MA0143.1	MA0143.1	0.926
MA0144.1	MA0144.1	0.334
MA0145.1	MA0145.1	0.663
MA0146.1	MA0146.1	0.611
MA0147.1	MA0147.1	9.8639e-7
MA0148.1	MA0148.1	0.84
MA0149.1	MA0149.1	0.0818
MA0150.1	MA0150.1	0.827
MA0152.1	MA0152.1	0.298
MA0153.1	MA0153.1	0.0483
MA0154.1	MA0154.1	0.0271
MA0155.1	MA0155.1	0.868
MA0156.1	MA0156.1	1.0531e-7
MA0157.1	MA0157.1	0.521
MA0159.1	MA0159.1	0.0964
MA0160.1	MA0160.1	0.12
MA0162.1	MA0162.1	0.828
MA0163.1	MA0163.1	2.08836e-14
MA0164.1	MA0164.1	0.901
MA0258.1	MA0258.1	0.0516
MA0259.1	MA0259.1	0.0127

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13055

Novel motif	Logo	P-value
1	1	0.0139
10	10	0.00841
100	100	0.262
101	101	0.219
102	102	0.69
103	103	0.0643
104	104	0.902
105	105	0.387
106	106	0.921
107	107	0.497
108	108	0.912
109	109	0.0308
11	11	0.0644
110	110	0.229
111	111	0.00928
112	112	0.574
113	113	0.512
114	114	0.00895
115	115	0.826
116	116	0.229
117	117	0.0439
118	118	0.0488
119	119	0.692
12	12	0.94
120	120	0.0418
121	121	0.814
122	122	0.845
123	123	0.0192
124	124	0.181
125	125	0.0417
126	126	0.592
127	127	0.107
128	128	0.93
129	129	0.164
13	13	0.0437
130	130	0.987
131	131	0.424
132	132	0.97
133	133	0.219
134	134	0.873
135	135	0.758
136	136	0.357
137	137	0.423
138	138	0.548
139	139	0.00463
14	14	0.75
140	140	0.0169
141	141	0.0605
142	142	0.42
143	143	0.98
144	144	0.634
145	145	0.672
146	146	0.728
147	147	0.433
148	148	0.0104
149	149	0.402
15	15	0.0787
150	150	0.934
151	151	0.677
152	152	0.156
153	153	0.634
154	154	0.835
155	155	0.0181
156	156	0.766
157	157	0.711
158	158	0.815
159	159	0.507
16	16	0.475
160	160	0.289
161	161	0.0907
162	162	0.541
163	163	0.378
164	164	0.0248
165	165	0.663
166	166	0.275
167	167	0.021
168	168	0.908
169	169	0.396
17	17	0.716
18	18	0.286
19	19	0.719
2	2	0.669
20	20	0.449
21	21	0.122
22	22	0.877
23	23	0.299
24	24	0.184
25	25	0.182
26	26	0.052
27	27	0.526
28	28	0.904
29	29	0.0147
3	3	0.0784
30	30	0.0972
31	31	0.732
32	32	0.926
33	33	0.293
34	34	0.741
35	35	0.0819
36	36	0.0218
37	37	0.316
38	38	0.323
39	39	0.645
4	4	0.322
40	40	0.348
41	41	0.536
42	42	0.174
43	43	0.379
44	44	0.0461
45	45	0.51
46	46	0.0738
47	47	0.0317
48	48	0.0637
49	49	0.15
5	5	0.579
50	50	0.846
51	51	0.864
52	52	0.332
53	53	0.805
54	54	0.916
55	55	0.569
56	56	0.756
57	57	0.0478
58	58	0.227
59	59	0.521
6	6	0.501
60	60	0.699
61	61	0.176
62	62	0.0965
63	63	0.428
64	64	0.108
65	65	0.97
66	66	0.526
67	67	0.823
68	68	0.665
69	69	0.422
7	7	0.0978
70	70	0.179
71	71	0.0155
72	72	0.943
73	73	0.741
74	74	0.368
75	75	0.0102
76	76	0.318
77	77	0.69
78	78	0.0466
79	79	0.847
8	8	0.0475
80	80	0.437
81	81	0.181
82	82	0.418
83	83	0.436
84	84	0.378
85	85	0.94
86	86	0.44
87	87	0.645
88	88	0.644
89	89	0.473
9	9	0.941
90	90	0.0154
91	91	0.939
92	92	0.719
93	93	0.345
94	94	0.208
95	95	0.112
96	96	0.43
97	97	0.38
98	98	0.112
99	99	0.587

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13055

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005556
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007806;DRR008678;DRZ000103;DRZ001488;DRZ011453;DRZ012838
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.18!151.82!SPI1;;chr1:92949331..92949377,-!p2@GFI1!1.96!90.40!GFI1;;chr6:135502408..135502459,+!p2@MYB!1.84!79.12!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.83!67.06!PLEK;;chr7:50344289..50344323,+!p1@IKZF1!1.80!61.42!IKZF1;;chr5:134369905..134369972,-!p1@PITX1!1.78!89.46!PITX1;;chr6:135502501..135502546,+!p1@MYB!1.76!66.90!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.74!218.88!CEBPA;;chr8:128747661..128747703,+!p6@MYC!1.69!64.55!MYC;;chr10:135122868..135122893,+!p3@ZNF511!1.65!43.87!ZNF511;;chr5:134369879..134369898,-!p2@PITX1!1.58!36.82!PITX1;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.53!LYL1;;chr12:54694758..54694805,-!p1@NFE2!1.40!29.30!NFE2;;chr8:128748470..128748487,+!p1@MYC!1.39!2501.71!MYC;;chr10:135122906..135122921,+!p4@ZNF511!1.36!22.09!ZNF511;;chr11:47399996..47400014,-!p4@SPI1!1.36!22.09!SPI1;;chr1:92951607..92951661,-!p1@GFI1!1.35!21.62!GFI1;;chr15:96875657..96875760,+!p14@NR2F2!1.30!30.87!NR2F2;;chr8:128747757..128747800,+!p7@MYC!1.29!24.91!MYC;;chr14:23588242..23588262,-!p1@CEBPE!1.27!17.55!CEBPE;;chr11:47400062..47400077,-!p2@SPI1!1.26!17.08!SPI1;;chr19:13213704..13213726,-!p3@LYL1!1.22!20.53!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.21!15.35!SPI1;;chr7:137620650..137620677,-!p3@CREB3L2!1.21!15.35!CREB3L2;;chr12:54694807..54694832,-!p3@NFE2!1.21!15.20!NFE2;;chr19:13213954..13214021,-!p4@LYL1!1.21!15.04!LYL1;;chr15:57511609..57511651,+!p2@TCF12!1.20!24.91!TCF12;;chr11:47399947..47399961,-!p3@SPI1!1.19!14.57!SPI1;;chr20:50159198..50159299,-!p1@NFATC2!1.17!20.37!NFATC2;;chr7:115670804..115670825,-!p1@TFEC!1.16!13.32!TFEC;;chr8:128748308..128748324,+!p2@MYC!1.14!349.55!MYC;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.14!27.89!SOHLH2;;chr7:137620684..137620711,-!p4@CREB3L2!1.12!12.22!CREB3L2;;chr2:60780607..60780624,-!p2@BCL11A!1.11!36.82!BCL11A;;chr11:47400045..47400060,-!p6@SPI1!1.11!11.75!SPI1;;chr8:128750654..128750793,+!p3@MYC!1.10!46.53!MYC;;chr8:128747729..128747748,+!p14@MYC!1.10!11.59!MYC;;chr14:75988771..75988826,+!p1@BATF!1.05!13.63!BATF;;chr15:76629123..76629151,+!p1@ISL2!1.05!11.28!ISL2;;chr14:23588458..23588473,-!p2@CEBPE!1.05!10.34!CEBPE;;chr13:41593425..41593480,-!p1@ELF1!1.02!61.26!ELF1;;chr13:72441315..72441454,-!p1@DACH1!1.02!19.27!DACH1;;chr20:42295713..42295738,+!p2@MYBL2!1.00!53.74!MYBL2;;chr2:60781201..60781258,-!p3@BCL11A!1.00!8.93!BCL11A;;chr4:4291837..4291859,-!p2@LYAR!0.99!29.30!LYAR;;chr3:18486354..18486377,-!p2@SATB1!0.99!10.97!SATB1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.99!8.77!ZBED1;;chr10:31288398..31288455,-!p2@ZNF438!0.97!9.87!ZNF438;;chr4:4291861..4291913,-!p1@LYAR!0.96!192.87!LYAR;;chr2:60778035..60778060,-!p4@BCL11A!0.96!9.71!BCL11A;;chr1:25256756..25256774,-!p1@RUNX3!0.95!15.04!RUNX3;;chr8:128747709..128747723,+!p20@MYC!0.95!7.83!MYC;;chr16:29819403..29819442,+!p5@MAZ!0.92!62.36!MAZ;;chr16:29819446..29819471,+!p9@MAZ!0.92!22.56!MAZ;;chr7:50343634..50343717,+!p2@IKZF1!0.91!7.21!IKZF1;;chr17:41623692..41623715,-!p1@ETV4!0.90!30.87!ETV4;;chr16:29819558..29819572,+!p28@MAZ!0.90!6.89!MAZ;;chr20:42295745..42295765,+!p1@MYBL2!0.89!116.26!MYBL2;;chr5:138609782..138609826,+!p5@MATR3!0.89!46.53!MATR3;;chr8:128750555..128750609,+!p5@MYC!0.89!14.10!MYC;;chr12:11802547..11802560,+!p5@ETV6!0.89!9.40!ETV6;;chr14:23588816..23588836,-!p4@CEBPE!0.88!6.58!CEBPE;;chr10:94449703..94449718,+!p1@HHEX!0.86!25.54!HHEX;;chr2:68592394..68592405,+!p2@PLEK!0.86!6.27!PLEK;;chr11:128563948..128564003,+!p1@FLI1!0.85!77.87!FLI1;;chr21:34442439..34442455,+!p1@OLIG1!0.85!6.11!OLIG1;;chr1:92949505..92949543,-!p5@GFI1!0.84!5.95!GFI1;;chr15:76629097..76629120,+!p2@ISL2!0.82!6.27!ISL2;;chr1:92952473..92952489,-!p3@GFI1!0.82!5.64!GFI1;;chr19:22817119..22817145,+!p1@ZNF492!0.81!9.56!ZNF492;;chr11:32457103..32457123,-!p3@WT1!0.81!5.48!WT1;;chr7:50344251..50344288,+!p3@IKZF1!0.81!5.48!IKZF1;;chr19:50432453..50432468,+!p1@ATF5!0.80!321.19!ATF5;;chr6:135513595..135513617,+!p4@MYB!0.80!5.33!MYB;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.73!HHEX;;chr1:35657108..35657135,-!p5@SFPQ!0.79!10.34!SFPQ;;chr17:42295897..42295953,-!p10@UBTF!0.79!7.05!UBTF;;chr10:31288370..31288393,-!p3@ZNF438!0.79!5.17!ZNF438;;chr5:134369973..134369984,-!p3@PITX1!0.79!5.17!PITX1;;chr6:135502472..135502489,+!p3@MYB!0.79!5.17!MYB;;chr12:54778471..54778528,-!p1@ZNF385A!0.78!5.01!ZNF385A;;chr8:128750493..128750522,+!p10@MYC!0.77!7.36!MYC;;chr17:42295777..42295816,-!p7@UBTF!0.76!5.95!UBTF;;chr8:128752850..128752874,+!p12@MYC!0.76!5.80!MYC;;chr15:57511589..57511608,+!p4@TCF12!0.76!4.70!TCF12;;chr8:128752734..128752763,+!p13@MYC!0.75!5.64!MYC;;chr6:20402102..20402152,+!p1@E2F3!0.73!19.58!E2F3;;chr1:35656508..35656584,-!p2@SFPQ!0.73!15.35!SFPQ;;chr13:72440772..72440847,-!p5@DACH1!0.73!4.39!DACH1;;chr13:114238997..114239077,+!p1@TFDP1!0.72!241.29!TFDP1;;chr1:35656397..35656455,-!p3@SFPQ!0.72!10.81!SFPQ;;chr8:128752771..128752843,+!p9@MYC!0.72!6.42!MYC;;chr21:34398234..34398250,+!p1@OLIG2!0.72!4.23!OLIG2;;chr6:34204642..34204664,+!p2@HMGA1!0.71!626.41!HMGA1;;chr2:239148671..239148686,-!p1@HES6!0.71!16.76!HES6;;chr1:43148855..43148908,+!p4@YBX1!0.71!6.89!YBX1;;chr2:200320768..200320800,-!p4@SATB2!0.71!4.07!SATB2;;chr12:54694653..54694672,-!p2@NFE2!0.71!4.07!NFE2;;chr2:60780753..60780800,-!p1@BCL11A!0.69!21.62!BCL11A;;chr11:19262421..19262455,-!p3@E2F8!0.69!3.92!E2F8;;chr13:27998831..27998851,+!p2@GTF3A!0.68!25.70!GTF3A;;chr8:128750983..128751021,+!p11@MYC!0.68!5.64!MYC;;chr7:50348268..50348366,+!p4@IKZF1!0.68!3.76!IKZF1;;chr2:169312350..169312362,+!p4@CERS6!0.68!3.76!CERS6;;chr16:29817789..29817838,+!p2@MAZ!0.67!57.03!MAZ;;chr17:41277372..41277418,-!p1@BRCA1!0.67!15.04!BRCA1;;chrX:147582130..147582147,+!p3@AFF2!0.66!3.60!AFF2;;chr6:135516877..135516900,+!p5@MYB!0.66!3.60!MYB;;chr11:19262461..19262476,-!p5@E2F8!0.66!3.60!E2F8;;chr12:54691711..54691725,-!p7@NFE2!0.66!3.60!NFE2;;chr13:79177703..79177729,-!p2@POU4F1!0.66!3.60!POU4F1;;chr12:7079780..7079791,-!p2@PHB2!0.65!21.00!PHB2;;chr11:32456842..32456852,-!p10@WT1!0.65!3.45!WT1;;chr11:32457075..32457095,-!p1@WT1!0.65!3.45!WT1;;chr13:72440901..72440968,-!p4@DACH1!0.65!3.45!DACH1;;chr3:141747459..141747475,-!p1@TFDP2!0.64!32.59!TFDP2;;chr1:43148792..43148849,+!p2@YBX1!0.64!14.57!YBX1;;chr19:49140572..49140594,-!p2@DBP!0.64!5.80!DBP;;chr17:41622925..41622976,-!p3@ETV4!0.64!5.33!ETV4;;chr6:144385698..144385742,-!p2@PLAGL1!0.64!4.23!PLAGL1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.63!5.80!PCBP2;;chr7:27224842..27224872,-!p1@HOXA11!0.63!3.29!HOXA11;;chr8:145669791..145669834,-!p1@TONSL!0.62!10.50!TONSL;;chr13:27998720..27998826,+!p1@GTF3A!0.61!350.81!GTF3A;;chr1:226595726..226595737,-!p2@PARP1!0.61!8.46!PARP1;;chr4:26321361..26321377,+!p6@RBPJ!0.61!4.07!RBPJ;;chr16:29817841..29817865,+!p1@MAZ!0.60!77.24!MAZ;;chr11:62369108..62369183,-!p3@MTA2!0.60!46.22!MTA2;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.95!WDHD1;;chr6:135516978..135516993,+!p7@MYB!0.60!2.98!MYB;;chr16:4322832..4322907,-!p1@TFAP4!0.59!26.64!TFAP4;;chr19:45579725..45579743,-!p1@ZNF296!0.59!15.51!ZNF296;;chr8:128749984..128750033,+!p4@MYC!0.59!12.22!MYC;;chr1:45805872..45805900,+!p2@TOE1!0.59!7.99!TOE1;;chr17:41622765..41622821,-!p2@ETV4!0.59!4.86!ETV4;;chr1:43148716..43148756,+!p6@YBX1!0.59!3.76!YBX1;;chr7:148581360..148581425,-!p1@EZH2!0.58!16.61!EZH2;;chr21:36421535..36421610,-!p2@RUNX1!0.58!11.91!RUNX1;;chr11:130184470..130184533,-!p2@ZBTB44!0.58!8.93!ZBTB44;;chr17:41623075..41623101,-!p9@ETV4!0.58!3.45!ETV4;;chr19:13213511..13213545,-!p2@LYL1!0.58!3.13!LYL1;;chr7:102985160..102985273,-!p1@DNAJC2!0.57!84.92!DNAJC2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.86!ETV4;;chr13:37393351..37393423,+!p1@RFXAP!0.56!24.29!RFXAP;;chr12:54694738..54694749,-!p5@NFE2!0.56!2.66!NFE2;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.66!DACH1;;chr2:172949484..172949522,+!p1@DLX1!0.56!2.66!DLX1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.55!49.67!MIS18BP1;;chr2:145277640..145277771,-!p1@ZEB2!0.55!43.09!ZEB2;;chr19:58400372..58400411,-!p1@ZNF814!0.55!16.45!ZNF814;;chr13:46543725..46543747,-!p2@ZC3H13!0.55!5.48!ZC3H13;;chr16:29818160..29818188,+!p6@MAZ!0.54!14.26!MAZ;;chr7:148581327..148581347,-!p2@EZH2!0.54!10.18!EZH2;;chr22:50247528..50247568,+!p2@ZBED4!0.54!7.05!ZBED4;;chr1:35657082..35657099,-!p8@SFPQ!0.54!4.23!SFPQ;;chr13:72440434..72440479,-!p6@DACH1!0.54!2.51!DACH1;;chr16:29819579..29819591,+!p32@MAZ!0.54!2.51!MAZ;;chr1:26496382..26496457,+!p1@ZNF593!0.53!184.73!ZNF593;;chr19:37096139..37096170,-!p2@ZNF529!0.53!7.99!ZNF529;;chr11:47399920..47399931,-!p7@SPI1!0.53!2.35!SPI1;;chr20:32274179..32274213,-!p1@E2F1!0.52!19.43!E2F1;;chr19:926001..926046,+!p1@ARID3A!0.52!10.03!ARID3A;;chr1:43148625..43148710,+!p3@YBX1!0.52!4.70!YBX1;;chr13:46543859..46543881,-!p10@ZC3H13!0.52!3.13!ZC3H13;;chr12:7079807..7079848,-!p1@PHB2!0.51!526.44!PHB2;;chr10:111967345..111967422,+!p1@MXI1!0.51!47.32!MXI1;;chr11:65686952..65686975,+!p5@DRAP1!0.51!15.82!DRAP1;;chr1:23857698..23857733,-!p1@E2F2!0.51!4.70!E2F2;;chr1:35656352..35656383,-!p7@SFPQ!0.51!4.39!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.50!125.81!TFAM;;chr10:94449649..94449664,+!p3@HHEX!0.50!3.60!HHEX;;chr11:32456894..32456906,-!p8@WT1!0.50!2.19!WT1;;chr6:135516909..135516925,+!p6@MYB!0.50!2.19!MYB;;chr2:200322259..200322280,-!p5@SATB2!0.50!2.19!SATB2;;chr2:60778062..60778075,-!p6@BCL11A!0.50!2.19!BCL11A;;chr19:58331088..58331106,+!p1@ZNF587!0.49!39.48!ZNF587;;chr10:45496346..45496409,+!p1@ZNF22!0.49!39.17!ZNF22;;chr12:2986275..2986363,-!p1@FOXM1!0.49!27.73!FOXM1;;chr1:246729483..246729538,-!p2@TFB2M!0.49!26.32!TFB2M;;chr22:20748434..20748455,+!p1@ZNF74!0.49!8.15!ZNF74;;chr9:137217986..137218049,+!p3@RXRA!0.49!7.36!RXRA;;chr7:27135591..27135658,-!p1@HOXA1!0.49!4.70!HOXA1;;chr17:79881332..79881348,-!p3@MAFG!0.49!3.45!MAFG;;chr10:51565239..51565263,+!p2@NCOA4!0.48!64.08!NCOA4;;chr18:47814032..47814079,-!p1@CXXC1!0.48!50.61!CXXC1;;chr9:117160738..117160782,-!p2@AKNA!0.48!10.65!AKNA;;chr18:3449527..3449582,+!p6@TGIF1!0.48!4.54!TGIF1;;chr1:226595648..226595659,-!p3@PARP1!0.48!3.92!PARP1;;chr1:45805907..45805918,+!p5@TOE1!0.48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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M3%2529%2520cell%2520line%253aHL60.CNhs13055.10829-111D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M3%2529%2520cell%2520line%253aHL60.CNhs13055.10829-111D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M3%2529%2520cell%2520line%253aHL60.CNhs13055.10829-111D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M3%2529%2520cell%2520line%253aHL60.CNhs13055.10829-111D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M3%2529%2520cell%2520line%253aHL60.CNhs13055.10829-111D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10829-111D1
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
+|library_id=CNhs13055
+|library_id_phase_based=2:CNhs13055
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10829
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10829
 |name=acute myeloid leukemia (FAB M3) cell line:HL60
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13055,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=127.989
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB0041
 |sample_cell_line=HL60
@@ Line 80: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10829-111D1;search_select_hide=table117:FF:10829-111D1
 }}

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FF:10829-111D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:07, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0