FF:10409-106B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005883 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007859;DRR008731;DRZ000156;DRZ001541;DRZ011506;DRZ012891 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100732 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.61!403.54!GATA2;;chr6:135502501..135502546,+!p1@MYB!2.33!251.91!MYB;;chrX:48644984..48645005,+!p1@GATA1!2.22!165.93!GATA1;;chr12:54694758..54694805,-!p1@NFE2!2.12!156.71!NFE2;;chr6:135502408..135502459,+!p2@MYB!2.11!145.74!MYB;;chr9:20382446..20382493,-!p4@MLLT3!2.08!120.00!MLLT3;;chr19:12998003..12998021,-!p1@KLF1!2.07!117.61!KLF1;;chr9:135854091..135854159,+!p1@GFI1B!1.94!86.62!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.85!69.61!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.84!73.43!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.75!55.31!MYB;;chr21:39870339..39870443,-!p1@ERG!1.75!55.15!ERG;;chrY:21906594..21906622,-!p1@KDM5D!1.58!36.71!KDM5D;;chr3:128206762..128206781,-!p2@GATA2!1.57!217.74!GATA2;;chr6:29648890..29648944,-!p1@ZFP57!1.54!33.38!ZFP57;;chr21:36421535..36421610,-!p2@RUNX1!1.40!83.76!RUNX1;;chr7:115670804..115670825,-!p1@TFEC!1.36!21.93!TFEC;;chr12:54689532..54689551,-!p4@NFE2!1.35!21.14!NFE2;;chr5:88178983..88179012,-!p1@MEF2C!1.34!154.96!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.32!20.03!PLEK;;chr8:128748308..128748324,+!p2@MYC!1.27!470.77!MYC;;chr2:145277640..145277771,-!p1@ZEB2!1.27!229.66!ZEB2;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.32!TAL1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.17!SPI1;;chrX:48644976..48644983,+!p2@GATA1!1.26!17.01!GATA1;;chr11:120107344..120107351,+!p1@POU2F3!1.25!20.50!POU2F3;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.87!HHEX;;chr8:60031619..60031676,-!p1@TOX!1.23!34.49!TOX;;chr6:15246200..15246214,+!p2@JARID2!1.22!42.75!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.58!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.21!96.00!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.21!15.10!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!1.21!15.10!HOXA9;;chr12:54694653..54694672,-!p2@NFE2!1.18!14.30!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.16!13.35!GFI1B;;chr4:87857474..87857489,+!p7@AFF1!1.15!22.73!AFF1;;chr19:13213555..13213568,-!p5@LYL1!1.15!13.03!LYL1;;chr8:37963466..37963506,+!p3@ASH2L!1.14!15.89!ASH2L;;chr3:63953435..63953499,+!p1@ATXN7!1.14!12.87!ATXN7;;chr7:137620684..137620711,-!p4@CREB3L2!1.13!12.56!CREB3L2;;chr1:61548225..61548299,+!p1@NFIA!1.11!154.01!NFIA;;chr8:28748099..28748141,+!p2@HMBOX1!1.11!37.35!HMBOX1;;chr3:141747459..141747475,-!p1@TFDP2!1.10!97.11!TFDP2;;chr8:128747661..128747703,+!p6@MYC!1.10!15.73!MYC;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.03!HOXB2;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.44!SPI1;;chrY:2803415..2803468,+!p1@ZFY!1.08!10.97!ZFY;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.81!TAL1;;chr5:88180342..88180365,-!p10@MEF2C!1.07!10.65!MEF2C;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.49!IKZF1;;chr9:135854058..135854072,+!p3@GFI1B!1.05!10.17!GFI1B;;chr4:109089901..109089930,-!p3@LEF1!1.05!10.17!LEF1;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.18!HHEX;;chrX:48645010..48645015,+!p3@GATA1!1.04!10.01!GATA1;;chr15:67391010..67391046,+!p13@SMAD3!1.04!9.85!SMAD3;;chr17:40441354..40441410,+!p2@STAT5A!1.04!9.85!STAT5A;;chr5:88179017..88179046,-!p2@MEF2C!1.03!39.58!MEF2C;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.48!AFF1;;chr12:54689552..54689574,-!p6@NFE2!1.03!9.70!NFE2;;chr6:144329500..144329526,-!p4@PLAGL1!1.02!22.57!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.62!ZNF385A;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.35!ETV6;;chr4:109088940..109089037,-!p4@LEF1!1.01!9.22!LEF1;;chr6:20402102..20402152,+!p1@E2F3!1.00!38.14!E2F3;;chr11:47399947..47399961,-!p3@SPI1!1.00!9.06!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.99!107.60!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.99!13.19!LYL1;;chr17:38020392..38020477,-!p1@IKZF3!0.99!8.74!IKZF3;;chr6:28304275..28304282,-!p7@ZNF323!0.99!8.74!ZNF323;;chr1:92951607..92951661,-!p1@GFI1!0.98!8.58!GFI1;;chr11:47399996..47400014,-!p4@SPI1!0.97!8.42!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.42!IKZF1;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.26!HOXA9;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!13.19!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.95!34.33!ZNF521;;chr7:50348268..50348366,+!p4@IKZF1!0.95!7.95!IKZF1;;chr1:61547894..61547968,+!p2@NFIA!0.94!23.05!NFIA;;chr17:46622205..46622218,-!p3@HOXB2!0.94!8.90!HOXB2;;chr4:109089436..109089456,-!p22@LEF1!0.94!7.63!LEF1;;chr2:60780607..60780624,-!p2@BCL11A!0.93!24.00!BCL11A;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.28!NFATC2;;chr19:13213465..13213478,-!p7@LYL1!0.93!7.47!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.83!STAT5A;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!12.87!ZNF804A;;chr8:60031682..60031710,-!p2@TOX!0.91!11.76!TOX;;chr4:87857491..87857519,+!p10@AFF1!0.91!10.01!AFF1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.40!PLAGL1;;chr13:72441315..72441454,-!p1@DACH1!0.90!14.46!DACH1;;chr17:17726907..17726958,-!p2@SREBF1!0.89!43.55!SREBF1;;chr3:141747950..141748004,-!p7@TFDP2!0.89!6.83!TFDP2;;chr2:214013461..214013517,-!p6@IKZF2!0.89!6.68!IKZF2;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.95!E2F8;;chr4:109089095..109089144,-!p6@LEF1!0.88!6.52!LEF1;;chr15:60884706..60884743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F28!0.37!2.23!ZNF28;;chr1:27023752..27023799,+!p4@ARID1A!0.37!2.07!ARID1A;;chr4:144434814..144434932,+!p1@SMARCA5!0.36!103.94!SMARCA5;;chr13:20357063..20357105,-!p1@PSPC1!0.36!66.91!PSPC1;;chr14:64971461..64971542,+!p1@ZBTB1!0.36!41.64!ZBTB1;;chr1:91487553..91487612,-!p1@ZNF644!0.36!34.97!ZNF644;;chr1:67390665..67390698,+!p1@MIER1!0.36!28.45!MIER1;;chr10:124768300..124768334,-!p1@IKZF5!0.36!25.27!IKZF5;;chr14:64970494..64970578,-!p1@ZBTB25!0.36!20.50!ZBTB25;;chr19:58740266..58740297,+!p1@ZNF544!0.36!14.30!ZNF544;;chr11:123612319..123612395,-!p1@ZNF202!0.36!11.28!ZNF202;;chr19:44455368..44455396,+!p1@ZNF221!0.36!6.36!ZNF221;;chr6:28411241..28411284,-!p1@ZSCAN23!0.36!5.88!ZSCAN23;;chr19:36705617..36705644,+!p4@ZNF146!0.36!5.24!ZNF146;;chr19:37178482..37178520,+!p1@ZNF567!0.36!4.93!ZNF567;;chr1:226595648..226595659,-!p3@PARP1!0.36!2.70!PARP1;;chr11:6947647..6947698,+!p2@ZNF215!0.36!2.07!ZNF215;;chr12:11802909..11802920,+!p7@ETV6!0.36!2.07!ETV6;;chr19:58383174..58383178,-!p3@ZNF814!0.36!1.59!ZNF814;;chr19:50529307..50529323,+!p3@ZNF473!0.36!1.27!ZNF473;;chr1:47697859..47697869,-!p14@TAL1!0.36!1.27!TAL1;;chr20:52226313..52226350,-!p3@ZNF217!0.36!1.27!ZNF217;;chr12:11802957..11802964,+!p8@ETV6!0.36!1.27!ETV6;;chr13:46626764..46626775,-!p16@ZC3H13!0.36!1.27!ZC3H13;;chr17:40440359..40440386,+!p4@STAT5A!0.36!1.27!STAT5A;;chr17:7197911..7197964,-!p1@YBX2!0.36!1.27!YBX2;;chr19:13213954..13214021,-!p4@LYL1!0.36!1.27!LYL1;;chr5:88185175..88185197,-!p13@MEF2C!0.36!1.27!MEF2C;;chr7:63505799..63505904,+!p1@ZNF727!0.36!1.27!ZNF727;;chr2:178129619..178129633,-!p16@NFE2L2!0.36!1.27!NFE2L2;;chr2:242556880..242556899,-!p5@THAP4!0.36!1.27!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.36!1.27!THRB;;chr17:30677160..30677200,+!p1@ZNF207!0.35!294.67!ZNF207;;chr14:65569186..65569243,-!p1@MAX!0.35!121.27!MAX;;chr10:60145155..60145206,+!p1@TFAM!0.35!88.85!TFAM;;chr11:695006..695074,-!p1@DEAF1!0.35!31.15!DEAF1;;chr16:68119250..68119293,+!p2@NFATC3!0.35!15.42!NFATC3;;chr11:62368696..62368759,-!p4@MTA2!0.35!12.08!MTA2;;chr19:19516507..19516539,+!p7@GATAD2A!0.35!5.40!GATAD2A;;chr21:34144115..34144138,-!p2@GCFC1!0.35!5.24!GCFC1;;chr8:86089369..86089408,+!p1@E2F5!0.35!4.77!E2F5;;chr4:87928328..87928351,+!p6@AFF1!0.35!4.61!AFF1;;chr4:146402843..146402864,+!p3@SMAD1!0.35!3.34!SMAD1;;chr19:56879534..56879615,+!p3@ZNF542!0.35!2.38!ZNF542;;chr11:67007611..67007622,+!p6@KDM2A!0.35!1.91!KDM2A;;chr19:6424813..6424835,-!p1@KHSRP!0.34!122.70!KHSRP;;chr12:50479109..50479146,+!p2@SMARCD1!0.34!33.38!SMARCD1;;chr4:87856129..87856186,+!p1@AFF1!0.34!26.70!AFF1;;chr19:19496728..19496813,+!p2@GATAD2A!0.34!23.36!GATAD2A;;chr12:95467267..95467350,-!p1@NR2C1!0.34!22.89!NR2C1;;chr19:57946684..57946723,+!p1@ZNF749!0.34!21.14!ZNF749;;chr19:37064145..37064216,-!p1@ZNF529!0.34!16.37!ZNF529;;chr1:167190091..167190156,+!p1@POU2F1!0.34!15.26!POU2F1;;chr19:12721513..12721572,-!p1@ZNF490!0.34!7.63!ZNF490;;chr13:41635285..41635356,-!p3@ELF1!0.34!7.47!ELF1;;chr19:56915668..56915732,+!p1@ZNF583!0.34!6.68!ZNF583;;chr2:178128250..178128293,-!p6@NFE2L2!0.34!4.29!NFE2L2;;chr14:74253834..74253862,-!p5@C14orf43!0.34!4.13!C14orf43;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.54!CXXC1;;chr15:77713299..77713316,+!p3@HMG20A!0.34!2.38!HMG20A;;chr6:56954905..56954915,+!p4@ZNF451!0.34!2.38!ZNF451;;chr19:53496806..53496848,-!p2@ZNF702P!0.34!2.23!ZNF702P;;chr4:331619..331630,+!p2@ZNF141!0.34!2.23!ZNF141;;chr1:211432593..211432642,+!p6@RCOR3!0.34!2.07!RCOR3;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.91!MBNL3;;chr18:14132422..14132440,-!p1@ZNF519!0.34!1.91!ZNF519;;chr8:106330696..106330719,+!p2@ZFPM2!0.34!1.75!ZFPM2;;chr8:28747944..28747955,+!p5@HMBOX1!0.34!1.59!HMBOX1;;chr1:158985469..158985489,+!p7@IFI16!0.34!1.59!IFI16;;chr17:80477571..80477637,+!p1@FOXK2!0.33!58.65!FOXK2;;chr7:137686791..137686821,-!p1@CREB3L2!0.33!55.15!CREB3L2;;chr1:27022485..27022543,+!p1@ARID1A!0.33!27.02!ARID1A;;chr19:59031131..59031193,-!p1@ZBTB45!0.33!24.64!ZBTB45;;chr15:77713222..77713271,+!p1@HMG20A!0.33!22.89!HMG20A;;chr1:247095194..247095235,-!p1@AHCTF1!0.33!20.18!AHCTF1;;chr19:12273866..12273935,+!p1@ZNF136!0.33!16.69!ZNF136;;chr14:74253865..74253917,-!p2@C14orf43!0.33!11.60!C14orf43;;chr19:35225121..35225175,+!p1@ZNF181!0.33!10.33!ZNF181;;chr19:19496624..19496660,+!p3@GATAD2A!0.33!8.11!GATAD2A;;chr4:87928353..87928401,+!p4@AFF1!0.33!7.95!AFF1;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.33!7.79!ZNF222;;chr12:57504975..57505019,-!p2@STAT6!0.33!7.31!STAT6;;chr19:44439387..44439419,-!p2@ZNF45!0.33!6.52!ZNF45;;chr9:3525910..3525955,-!p4@RFX3!0.33!5.09!RFX3;;chr19:58446721..58446779,-!p1@ZNF418!0.33!4.61!ZNF418;;chr1:41174988..41175047,+!p4@NFYC!0.33!4.45!NFYC;;chr8:182424..182462,+!p1@ZNF596!0.33!4.29!ZNF596;;chr4:56412767..56412799,-!p3@CLOCK!0.33!3.66!CLOCK;;chr19:54024251..54024305,+!p4@ZNF331!0.33!2.38!ZNF331;;chr19:35455160..35455197,-!p2@ZNF792!0.33!2.23!ZNF792;;chr8:128750493..128750522,+!p10@MYC!0.33!2.07!MYC;;chr2:192015701..192015743,-!p1@STAT4!0.33!1.91!STAT4;;chr19:44764031..44764072,+!p1@ZNF233!0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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.61!403.54!GATA2;;chr6:135502501..135502546,+!p1@MYB!2.33!251.91!MYB;;chrX:48644984..48645005,+!p1@GATA1!2.22!165.93!GATA1;;chr12:54694758..54694805,-!p1@NFE2!2.12!156.71!NFE2;;chr6:135502408..135502459,+!p2@MYB!2.11!145.74!MYB;;chr9:20382446..20382493,-!p4@MLLT3!2.08!120.00!MLLT3;;chr19:12998003..12998021,-!p1@KLF1!2.07!117.61!KLF1;;chr9:135854091..135854159,+!p1@GFI1B!1.94!86.62!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.85!69.61!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.84!73.43!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.75!55.31!MYB;;chr21:39870339..39870443,-!p1@ERG!1.75!55.15!ERG;;chrY:21906594..21906622,-!p1@KDM5D!1.58!36.71!KDM5D;;chr3:128206762..128206781,-!p2@GATA2!1.57!217.74!GATA2;;chr6:29648890..29648944,-!p1@ZFP57!1.54!33.38!ZFP57;;chr21:36421535..36421610,-!p2@RUNX1!1.40!83.76!RUNX1;;chr7:115670804..115670825,-!p1@TFEC!1.36!21.93!TFEC;;chr12:54689532..54689551,-!p4@NFE2!1.35!21.14!NFE2;;chr5:88178983..88179012,-!p1@MEF2C!1.34!154.96!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.32!20.03!PLEK;;chr8:128748308..128748324,+!p2@MYC!1.27!470.77!MYC;;chr2:145277640..145277771,-!p1@ZEB2!1.27!229.66!ZEB2;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.32!TAL1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.17!SPI1;;chrX:48644976..48644983,+!p2@GATA1!1.26!17.01!GATA1;;chr11:120107344..120107351,+!p1@POU2F3!1.25!20.50!POU2F3;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.87!HHEX;;chr8:60031619..60031676,-!p1@TOX!1.23!34.49!TOX;;chr6:15246200..15246214,+!p2@JARID2!1.22!42.75!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.58!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.21!96.00!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.21!15.10!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!1.21!15.10!HOXA9;;chr12:54694653..54694672,-!p2@NFE2!1.18!14.30!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.16!13.35!GFI1B;;chr4:87857474..87857489,+!p7@AFF1!1.15!22.73!AFF1;;chr19:13213555..13213568,-!p5@LYL1!1.15!13.03!LYL1;;chr8:37963466..37963506,+!p3@ASH2L!1.14!15.89!ASH2L;;chr3:63953435..63953499,+!p1@ATXN7!1.14!12.87!ATXN7;;chr7:137620684..137620711,-!p4@CREB3L2!1.13!12.56!CREB3L2;;chr1:61548225..61548299,+!p1@NFIA!1.11!154.01!NFIA;;chr8:28748099..28748141,+!p2@HMBOX1!1.11!37.35!HMBOX1;;chr3:141747459..141747475,-!p1@TFDP2!1.10!97.11!TFDP2;;chr8:128747661..128747703,+!p6@MYC!1.10!15.73!MYC;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.03!HOXB2;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.44!SPI1;;chrY:2803415..2803468,+!p1@ZFY!1.08!10.97!ZFY;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.81!TAL1;;chr5:88180342..88180365,-!p10@MEF2C!1.07!10.65!MEF2C;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.49!IKZF1;;chr9:135854058..135854072,+!p3@GFI1B!1.05!10.17!GFI1B;;chr4:109089901..109089930,-!p3@LEF1!1.05!10.17!LEF1;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.18!HHEX;;chrX:48645010..48645015,+!p3@GATA1!1.04!10.01!GATA1;;chr15:67391010..67391046,+!p13@SMAD3!1.04!9.85!SMAD3;;chr17:40441354..40441410,+!p2@STAT5A!1.04!9.85!STAT5A;;chr5:88179017..88179046,-!p2@MEF2C!1.03!39.58!MEF2C;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.48!AFF1;;chr12:54689552..54689574,-!p6@NFE2!1.03!9.70!NFE2;;chr6:144329500..144329526,-!p4@PLAGL1!1.02!22.57!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.62!ZNF385A;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.35!ETV6;;chr4:109088940..109089037,-!p4@LEF1!1.01!9.22!LEF1;;chr6:20402102..20402152,+!p1@E2F3!1.00!38.14!E2F3;;chr11:47399947..47399961,-!p3@SPI1!1.00!9.06!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.99!107.60!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.99!13.19!LYL1;;chr17:38020392..38020477,-!p1@IKZF3!0.99!8.74!IKZF3;;chr6:28304275..28304282,-!p7@ZNF323!0.99!8.74!ZNF323;;chr1:92951607..92951661,-!p1@GFI1!0.98!8.58!GFI1;;chr11:47399996..47400014,-!p4@SPI1!0.97!8.42!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.42!IKZF1;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.26!HOXA9;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!13.19!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.95!34.33!ZNF521;;chr7:50348268..50348366,+!p4@IKZF1!0.95!7.95!IKZF1;;chr1:61547894..61547968,+!p2@NFIA!0.94!23.05!NFIA;;chr17:46622205..46622218,-!p3@HOXB2!0.94!8.90!HOXB2;;chr4:109089436..109089456,-!p22@LEF1!0.94!7.63!LEF1;;chr2:60780607..60780624,-!p2@BCL11A!0.93!24.00!BCL11A;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.28!NFATC2;;chr19:13213465..13213478,-!p7@LYL1!0.93!7.47!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.83!STAT5A;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!12.87!ZNF804A;;chr8:60031682..60031710,-!p2@TOX!0.91!11.76!TOX;;chr4:87857491..87857519,+!p10@AFF1!0.91!10.01!AFF1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.40!PLAGL1;;chr13:72441315..72441454,-!p1@DACH1!0.90!14.46!DACH1;;chr17:17726907..17726958,-!p2@SREBF1!0.89!43.55!SREBF1;;chr3:141747950..141748004,-!p7@TFDP2!0.89!6.83!TFDP2;;chr2:214013461..214013517,-!p6@IKZF2!0.89!6.68!IKZF2;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.95!E2F8;;chr4:109089095..109089144,-!p6@LEF1!0.88!6.52!LEF1;;chr15:60884706..60884743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F28!0.37!2.23!ZNF28;;chr1:27023752..27023799,+!p4@ARID1A!0.37!2.07!ARID1A;;chr4:144434814..144434932,+!p1@SMARCA5!0.36!103.94!SMARCA5;;chr13:20357063..20357105,-!p1@PSPC1!0.36!66.91!PSPC1;;chr14:64971461..64971542,+!p1@ZBTB1!0.36!41.64!ZBTB1;;chr1:91487553..91487612,-!p1@ZNF644!0.36!34.97!ZNF644;;chr1:67390665..67390698,+!p1@MIER1!0.36!28.45!MIER1;;chr10:124768300..124768334,-!p1@IKZF5!0.36!25.27!IKZF5;;chr14:64970494..64970578,-!p1@ZBTB25!0.36!20.50!ZBTB25;;chr19:58740266..58740297,+!p1@ZNF544!0.36!14.30!ZNF544;;chr11:123612319..123612395,-!p1@ZNF202!0.36!11.28!ZNF202;;chr19:44455368..44455396,+!p1@ZNF221!0.36!6.36!ZNF221;;chr6:28411241..28411284,-!p1@ZSCAN23!0.36!5.88!ZSCAN23;;chr19:36705617..36705644,+!p4@ZNF146!0.36!5.24!ZNF146;;chr19:37178482..37178520,+!p1@ZNF567!0.36!4.93!ZNF567;;chr1:226595648..226595659,-!p3@PARP1!0.36!2.70!PARP1;;chr11:6947647..6947698,+!p2@ZNF215!0.36!2.07!ZNF215;;chr12:11802909..11802920,+!p7@ETV6!0.36!2.07!ETV6;;chr19:58383174..58383178,-!p3@ZNF814!0.36!1.59!ZNF814;;chr19:50529307..50529323,+!p3@ZNF473!0.36!1.27!ZNF473;;chr1:47697859..47697869,-!p14@TAL1!0.36!1.27!TAL1;;chr20:52226313..52226350,-!p3@ZNF217!0.36!1.27!ZNF217;;chr12:11802957..11802964,+!p8@ETV6!0.36!1.27!ETV6;;chr13:46626764..46626775,-!p16@ZC3H13!0.36!1.27!ZC3H13;;chr17:40440359..40440386,+!p4@STAT5A!0.36!1.27!STAT5A;;chr17:7197911..7197964,-!p1@YBX2!0.36!1.27!YBX2;;chr19:13213954..13214021,-!p4@LYL1!0.36!1.27!LYL1;;chr5:88185175..88185197,-!p13@MEF2C!0.36!1.27!MEF2C;;chr7:63505799..63505904,+!p1@ZNF727!0.36!1.27!ZNF727;;chr2:178129619..178129633,-!p16@NFE2L2!0.36!1.27!NFE2L2;;chr2:242556880..242556899,-!p5@THAP4!0.36!1.27!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.36!1.27!THRB;;chr17:30677160..30677200,+!p1@ZNF207!0.35!294.67!ZNF207;;chr14:65569186..65569243,-!p1@MAX!0.35!121.27!MAX;;chr10:60145155..60145206,+!p1@TFAM!0.35!88.85!TFAM;;chr11:695006..695074,-!p1@DEAF1!0.35!31.15!DEAF1;;chr16:68119250..68119293,+!p2@NFATC3!0.35!15.42!NFATC3;;chr11:62368696..62368759,-!p4@MTA2!0.35!12.08!MTA2;;chr19:19516507..19516539,+!p7@GATAD2A!0.35!5.40!GATAD2A;;chr21:34144115..34144138,-!p2@GCFC1!0.35!5.24!GCFC1;;chr8:86089369..86089408,+!p1@E2F5!0.35!4.77!E2F5;;chr4:87928328..87928351,+!p6@AFF1!0.35!4.61!AFF1;;chr4:146402843..146402864,+!p3@SMAD1!0.35!3.34!SMAD1;;chr19:56879534..56879615,+!p3@ZNF542!0.35!2.38!ZNF542;;chr11:67007611..67007622,+!p6@KDM2A!0.35!1.91!KDM2A;;chr19:6424813..6424835,-!p1@KHSRP!0.34!122.70!KHSRP;;chr12:50479109..50479146,+!p2@SMARCD1!0.34!33.38!SMARCD1;;chr4:87856129..87856186,+!p1@AFF1!0.34!26.70!AFF1;;chr19:19496728..19496813,+!p2@GATAD2A!0.34!23.36!GATAD2A;;chr12:95467267..95467350,-!p1@NR2C1!0.34!22.89!NR2C1;;chr19:57946684..57946723,+!p1@ZNF749!0.34!21.14!ZNF749;;chr19:37064145..37064216,-!p1@ZNF529!0.34!16.37!ZNF529;;chr1:167190091..167190156,+!p1@POU2F1!0.34!15.26!POU2F1;;chr19:12721513..12721572,-!p1@ZNF490!0.34!7.63!ZNF490;;chr13:41635285..41635356,-!p3@ELF1!0.34!7.47!ELF1;;chr19:56915668..56915732,+!p1@ZNF583!0.34!6.68!ZNF583;;chr2:178128250..178128293,-!p6@NFE2L2!0.34!4.29!NFE2L2;;chr14:74253834..74253862,-!p5@C14orf43!0.34!4.13!C14orf43;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.54!CXXC1;;chr15:77713299..77713316,+!p3@HMG20A!0.34!2.38!HMG20A;;chr6:56954905..56954915,+!p4@ZNF451!0.34!2.38!ZNF451;;chr19:53496806..53496848,-!p2@ZNF702P!0.34!2.23!ZNF702P;;chr4:331619..331630,+!p2@ZNF141!0.34!2.23!ZNF141;;chr1:211432593..211432642,+!p6@RCOR3!0.34!2.07!RCOR3;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.91!MBNL3;;chr18:14132422..14132440,-!p1@ZNF519!0.34!1.91!ZNF519;;chr8:106330696..106330719,+!p2@ZFPM2!0.34!1.75!ZFPM2;;chr8:28747944..28747955,+!p5@HMBOX1!0.34!1.59!HMBOX1;;chr1:158985469..158985489,+!p7@IFI16!0.34!1.59!IFI16;;chr17:80477571..80477637,+!p1@FOXK2!0.33!58.65!FOXK2;;chr7:137686791..137686821,-!p1@CREB3L2!0.33!55.15!CREB3L2;;chr1:27022485..27022543,+!p1@ARID1A!0.33!27.02!ARID1A;;chr19:59031131..59031193,-!p1@ZBTB45!0.33!24.64!ZBTB45;;chr15:77713222..77713271,+!p1@HMG20A!0.33!22.89!HMG20A;;chr1:247095194..247095235,-!p1@AHCTF1!0.33!20.18!AHCTF1;;chr19:12273866..12273935,+!p1@ZNF136!0.33!16.69!ZNF136;;chr14:74253865..74253917,-!p2@C14orf43!0.33!11.60!C14orf43;;chr19:35225121..35225175,+!p1@ZNF181!0.33!10.33!ZNF181;;chr19:19496624..19496660,+!p3@GATAD2A!0.33!8.11!GATAD2A;;chr4:87928353..87928401,+!p4@AFF1!0.33!7.95!AFF1;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.33!7.79!ZNF222;;chr12:57504975..57505019,-!p2@STAT6!0.33!7.31!STAT6;;chr19:44439387..44439419,-!p2@ZNF45!0.33!6.52!ZNF45;;chr9:3525910..3525955,-!p4@RFX3!0.33!5.09!RFX3;;chr19:58446721..58446779,-!p1@ZNF418!0.33!4.61!ZNF418;;chr1:41174988..41175047,+!p4@NFYC!0.33!4.45!NFYC;;chr8:182424..182462,+!p1@ZNF596!0.33!4.29!ZNF596;;chr4:56412767..56412799,-!p3@CLOCK!0.33!3.66!CLOCK;;chr19:54024251..54024305,+!p4@ZNF331!0.33!2.38!ZNF331;;chr19:35455160..35455197,-!p2@ZNF792!0.33!2.23!ZNF792;;chr8:128750493..128750522,+!p10@MYC!0.33!2.07!MYC;;chr2:192015701..192015743,-!p1@STAT4!0.33!1.91!STAT4;;chr19:44764031..44764072,+!p1@ZNF233!0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| ||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10409-106B4 | |id=FF:10409-106B4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100732 | |is_a=EFO:0002091;;FF:0000210;;FF:0100732 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10727 | |||
|library_id_phase_based=2:CNhs10727 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10409 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10409 | |||
|name=chronic myelogenous leukemia cell line:KU812 | |name=chronic myelogenous leukemia cell line:KU812 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10727,LSID691,release008,COMPLETED | |profile_hcage=CNhs10727,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 78: | ||
|rna_weight_ug=59.6555 | |rna_weight_ug=59.6555 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0495 | |sample_cell_catalog=RCB0495 | ||
|sample_cell_line=KU812 | |sample_cell_line=KU812 | ||
| Line 80: | Line 100: | ||
|top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408 | |top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10409-106B4;search_select_hide=table117:FF:10409-106B4 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | chronic myelogenous leukemia cell line:KU812 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10727 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10727
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10727
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.165 |
| 10 | 10 | 0.0148 |
| 100 | 100 | 0.704 |
| 101 | 101 | 0.236 |
| 102 | 102 | 0.528 |
| 103 | 103 | 0.721 |
| 104 | 104 | 0.559 |
| 105 | 105 | 0.492 |
| 106 | 106 | 0.217 |
| 107 | 107 | 0.502 |
| 108 | 108 | 0.374 |
| 109 | 109 | 0.0433 |
| 11 | 11 | 0.155 |
| 110 | 110 | 0.157 |
| 111 | 111 | 0.0557 |
| 112 | 112 | 0.0705 |
| 113 | 113 | 0.694 |
| 114 | 114 | 0.49 |
| 115 | 115 | 0.0834 |
| 116 | 116 | 0.974 |
| 117 | 117 | 0.0672 |
| 118 | 118 | 0.961 |
| 119 | 119 | 0.307 |
| 12 | 12 | 0.933 |
| 120 | 120 | 0.676 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.911 |
| 123 | 123 | 0.655 |
| 124 | 124 | 0.0181 |
| 125 | 125 | 0.567 |
| 126 | 126 | 0.32 |
| 127 | 127 | 0.494 |
| 128 | 128 | 0.25 |
| 129 | 129 | 0.865 |
| 13 | 13 | 0.00505 |
| 130 | 130 | 0.00929 |
| 131 | 131 | 0.423 |
| 132 | 132 | 0.407 |
| 133 | 133 | 0.18 |
| 134 | 134 | 0.841 |
| 135 | 135 | 0.514 |
| 136 | 136 | 0.0478 |
| 137 | 137 | 0.694 |
| 138 | 138 | 0.626 |
| 139 | 139 | 0.537 |
| 14 | 14 | 0.298 |
| 140 | 140 | 0.828 |
| 141 | 141 | 0.308 |
| 142 | 142 | 0.458 |
| 143 | 143 | 0.208 |
| 144 | 144 | 0.609 |
| 145 | 145 | 0.537 |
| 146 | 146 | 0.358 |
| 147 | 147 | 0.101 |
| 148 | 148 | 0.848 |
| 149 | 149 | 0.141 |
| 15 | 15 | 0.484 |
| 150 | 150 | 0.978 |
| 151 | 151 | 0.524 |
| 152 | 152 | 0.0466 |
| 153 | 153 | 0.847 |
| 154 | 154 | 0.989 |
| 155 | 155 | 0.0894 |
| 156 | 156 | 0.64 |
| 157 | 157 | 0.741 |
| 158 | 158 | 0.88 |
| 159 | 159 | 0.364 |
| 16 | 16 | 0.312 |
| 160 | 160 | 0.343 |
| 161 | 161 | 0.403 |
| 162 | 162 | 0.907 |
| 163 | 163 | 0.238 |
| 164 | 164 | 0.12 |
| 165 | 165 | 0.797 |
| 166 | 166 | 0.336 |
| 167 | 167 | 0.433 |
| 168 | 168 | 0.779 |
| 169 | 169 | 0.674 |
| 17 | 17 | 0.741 |
| 18 | 18 | 0.269 |
| 19 | 19 | 0.801 |
| 2 | 2 | 0.225 |
| 20 | 20 | 0.164 |
| 21 | 21 | 0.927 |
| 22 | 22 | 0.845 |
| 23 | 23 | 0.0146 |
| 24 | 24 | 0.554 |
| 25 | 25 | 0.185 |
| 26 | 26 | 0.504 |
| 27 | 27 | 0.499 |
| 28 | 28 | 0.492 |
| 29 | 29 | 0.0438 |
| 3 | 3 | 0.303 |
| 30 | 30 | 0.0201 |
| 31 | 31 | 0.175 |
| 32 | 32 | 0.0119 |
| 33 | 33 | 0.116 |
| 34 | 34 | 0.607 |
| 35 | 35 | 0.632 |
| 36 | 36 | 0.0225 |
| 37 | 37 | 0.479 |
| 38 | 38 | 0.863 |
| 39 | 39 | 0.489 |
| 4 | 4 | 0.0214 |
| 40 | 40 | 0.182 |
| 41 | 41 | 0.899 |
| 42 | 42 | 0.373 |
| 43 | 43 | 0.481 |
| 44 | 44 | 0.575 |
| 45 | 45 | 0.74 |
| 46 | 46 | 0.553 |
| 47 | 47 | 0.0966 |
| 48 | 48 | 0.191 |
| 49 | 49 | 0.084 |
| 5 | 5 | 0.57 |
| 50 | 50 | 0.998 |
| 51 | 51 | 0.638 |
| 52 | 52 | 0.265 |
| 53 | 53 | 0.164 |
| 54 | 54 | 0.586 |
| 55 | 55 | 0.351 |
| 56 | 56 | 0.98 |
| 57 | 57 | 0.487 |
| 58 | 58 | 0.169 |
| 59 | 59 | 0.878 |
| 6 | 6 | 0.959 |
| 60 | 60 | 0.753 |
| 61 | 61 | 0.342 |
| 62 | 62 | 0.29 |
| 63 | 63 | 0.981 |
| 64 | 64 | 0.427 |
| 65 | 65 | 0.328 |
| 66 | 66 | 2.6691e-9 |
| 67 | 67 | 0.802 |
| 68 | 68 | 0.257 |
| 69 | 69 | 0.866 |
| 7 | 7 | 0.0267 |
| 70 | 70 | 0.383 |
| 71 | 71 | 0.0707 |
| 72 | 72 | 0.865 |
| 73 | 73 | 0.453 |
| 74 | 74 | 0.542 |
| 75 | 75 | 0.0456 |
| 76 | 76 | 0.235 |
| 77 | 77 | 0.187 |
| 78 | 78 | 0.0323 |
| 79 | 79 | 0.0851 |
| 8 | 8 | 0.89 |
| 80 | 80 | 0.435 |
| 81 | 81 | 0.943 |
| 82 | 82 | 0.819 |
| 83 | 83 | 0.401 |
| 84 | 84 | 0.893 |
| 85 | 85 | 0.183 |
| 86 | 86 | 0.987 |
| 87 | 87 | 0.199 |
| 88 | 88 | 0.503 |
| 89 | 89 | 0.391 |
| 9 | 9 | 0.873 |
| 90 | 90 | 0.304 |
| 91 | 91 | 0.12 |
| 92 | 92 | 0.261 |
| 93 | 93 | 0.89 |
| 94 | 94 | 0.568 |
| 95 | 95 | 0.0322 |
| 96 | 96 | 0.941 |
| 97 | 97 | 0.341 |
| 98 | 98 | 0.322 |
| 99 | 99 | 0.471 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10727
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100732 KU-812 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100732 (KU-812 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
