FF:10777-110G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005120 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005120 | ||
|accession_numbers=CAGE;DRX007793;DRR008665;DRZ000090;DRZ001475;DRZ011440;DRZ012825 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057139;DRR062898;DRZ007974 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0002127,CL:0000911,CL:0000814 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102504,FF:0101035,FF:0100741,FF:0100773,FF:0100739 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.99!95.94!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.92!82.72!TBX21;;chr8:67525443..67525459,-!p2@MYBL1!1.83!97.74!MYBL1;;chr3:27763807..27763822,-!p1@EOMES!1.77!57.72!EOMES;;chr1:25291475..25291511,-!p2@RUNX3!1.66!45.06!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.63!41.36!IRF4;;chr20:50159198..50159299,-!p1@NFATC2!1.54!48.08!NFATC2;;chr2:192015701..192015743,-!p1@STAT4!1.48!40.13!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.46!74.98!AKNA;;chr8:72756063..72756125,-!p1@MSC!1.44!52.79!MSC;;chr14:75988771..75988826,+!p1@BATF!1.43!34.41!BATF;;chr2:231090433..231090469,+!p1@SP140!1.43!25.89!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.41!45.73!RUNX3;;chr8:72756637..72756664,-!p3@MSC!1.35!24.32!MSC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.50!ZBED1;;chr1:158978768..158978800,+!p8@IFI16!1.28!18.16!IFI16;;chr7:137620650..137620677,-!p3@CREB3L2!1.27!17.71!CREB3L2;;chr8:67525473..67525518,-!p1@MYBL1!1.23!35.98!MYBL1;;chr7:50343634..50343717,+!p2@IKZF1!1.20!14.68!IKZF1;;chr20:42543441..42543497,+!p1@TOX2!1.18!63.22!TOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.90!HOXA9;;chr8:72756667..72756736,-!p2@MSC!1.16!21.07!MSC;;chr10:8096772..8096787,+!p2@GATA3!1.16!15.80!GATA3;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.56!PLEK;;chr1:23857698..23857733,-!p1@E2F2!1.14!23.65!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!1.10!11.66!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.09!11.32!ZBTB32;;chr8:60031619..60031676,-!p1@TOX!1.05!22.42!TOX;;chr8:72756023..72756055,-!p6@MSC!1.05!12.89!MSC;;chr17:46703212..46703238,-!p2@HOXB9!1.05!10.20!HOXB9;;chr7:137620684..137620711,-!p4@CREB3L2!1.04!9.86!CREB3L2;;chr16:68119324..68119364,+!p1@NFATC3!1.03!44.27!NFATC3;;chr14:75988831..75988847,+!p2@BATF!1.03!9.64!BATF;;chr15:60884706..60884743,-!p1@RORA!1.02!49.65!RORA;;chr15:74833584..74833626,+!p1@ARID3B!1.01!22.08!ARID3B;;chr2:231090344..231090361,-!p3@SP110!1.01!9.30!SP110;;chr3:18486354..18486377,-!p2@SATB1!1.00!11.32!SATB1;;chr17:46703687..46703740,-!p1@HOXB9!0.98!8.52!HOXB9;;chr7:50343895..50343936,+!p5@IKZF1!0.97!8.41!IKZF1;;chr8:72755987..72756002,-!p7@MSC!0.97!8.41!MSC;;chr7:50344251..50344288,+!p3@IKZF1!0.96!8.18!IKZF1;;chr17:46703942..46703964,-!p4@HOXB9!0.96!8.07!HOXB9;;chr20:56195525..56195556,-!p2@ZBP1!0.95!7.96!ZBP1;;chr2:231090471..231090504,+!p2@SP140!0.95!7.85!SP140;;chr19:19779619..19779670,+!p1@ZNF101!0.94!22.53!ZNF101;;chr8:67525524..67525543,-!p3@MYBL1!0.93!12.78!MYBL1;;chr5:176738887..176738934,-!p1@MXD3!0.92!51.00!MXD3;;chr7:50344289..50344323,+!p1@IKZF1!0.92!7.40!IKZF1;;chr1:212873267..212873332,-!p1@BATF3!0.91!9.75!BATF3;;chr1:25291620..25291635,-!p4@RUNX3!0.91!7.06!RUNX3;;chr1:158979686..158979745,+!p1@IFI16!0.90!240.76!IFI16;;chr20:32274179..32274213,-!p1@E2F1!0.90!48.31!E2F1;;chr13:41593425..41593480,-!p1@ELF1!0.89!45.62!ELF1;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.52!PRDM1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.29!ASH2L;;chr21:47278815..47278834,+!p6@PCBP3!0.87!6.39!PCBP3;;chr7:64838786..64838809,+!p2@ZNF92!0.86!37.32!ZNF92;;chr14:37131058..37131139,+!p1@PAX9!0.86!6.16!PAX9;;chr8:42698194..42698239,-!p2@THAP1!0.85!28.58!THAP1;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.43!BRCA1;;chr4:4291837..4291859,-!p2@LYAR!0.85!20.74!LYAR;;chr7:27190547..27190591,-!p1@HOXA6!0.85!6.05!HOXA6;;chr19:4153613..4153652,+!p1@CREB3L3!0.85!6.05!CREB3L3;;chr19:19729477..19729542,-!p1@PBX4!0.84!13.23!PBX4;;chr7:50348268..50348366,+!p4@IKZF1!0.84!5.94!IKZF1;;chr16:67063036..67063088,+!p1@CBFB!0.83!100.32!CBFB;;chr7:148581327..148581347,-!p2@EZH2!0.83!20.62!EZH2;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.17!GATA3;;chr3:27763613..27763618,-!p6@EOMES!0.83!5.83!EOMES;;chr17:61920280..61920343,-!p2@SMARCD2!0.82!58.84!SMARCD2;;chr20:48599506..48599526,+!p1@SNAI1!0.82!39.01!SNAI1;;chr16:68118689..68118733,+!p3@NFATC3!0.82!15.02!NFATC3;;chr20:31350184..31350200,+!p1@DNMT3B!0.82!12.33!DNMT3B;;chr10:8095593..8095625,+!p3@GATA3!0.82!6.61!GATA3;;chr7:99214559..99214601,+!p1@ZNF498!0.81!73.19!ZNF498;;chr20:42543506..42543549,+!p2@TOX2!0.81!13.79!TOX2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.49!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!0.80!7.29!STAT4;;chr6:100061724..100061753,+!p1@PRDM13!0.80!5.38!PRDM13;;chr7:27196267..27196311,-!p1@HOXA7!0.80!5.38!HOXA7;;chr1:212873084..212873137,-!p2@BATF3!0.80!5.27!BATF3;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.18!MYBL2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.24!EZH2;;chr7:99156212..99156244,+!p3@ZNF655!0.79!21.63!ZNF655;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.83!ISL2;;chr3:27762020..27762023,-!p5@EOMES!0.79!5.16!EOMES;;chr1:92951607..92951661,-!p1@GFI1!0.79!5.16!GFI1;;chr17:7388010..7388017,-!p5@ZBTB4!0.78!8.85!ZBTB4;;chr8:72756267..72756296,-!p4@MSC!0.78!7.62!MSC;;chr15:67391010..67391046,+!p13@SMAD3!0.78!5.04!SMAD3;;chr8:102217679..102217719,-!p2@ZNF706!0.77!18.38!ZNF706;;chr1:158978830..158978851,+!p22@IFI16!0.77!4.93!IFI16;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.39!MYBL2;;chr3:71179699..71179744,-!p2@FOXP1!0.75!37.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;chr4:492909..492968,-!p2@ZNF721!0.14!4.82!ZNF721;;chr16:2059797..2059837,-!p1@ZNF598!0.14!4.37!ZNF598;;chr10:105110890..105110914,-!p2@PCGF6!0.14!3.70!PCGF6;;chr19:12721616..12721640,-!p2@ZNF490!0.14!3.47!ZNF490;;chr1:173837488..173837526,+!p1@ZBTB37!0.14!3.47!ZBTB37;;chr19:45252008..45252024,+!p2@BCL3!0.14!3.36!BCL3;;chr18:45457478..45457517,-!p6@SMAD2!0.14!2.80!SMAD2;;chr12:104532004..104532033,-!p4@NFYB!0.14!2.69!NFYB;;chr19:8942962..8942987,-!p1@ZNF558!0.14!2.58!ZNF558;;chr15:50647347..50647366,-!p3@GABPB1!0.14!2.35!GABPB1;;chr4:57774018..57774040,+!p3@REST!0.14!2.02!REST;;chr19:9879350..9879419,-!p2@ZNF846!0.14!1.79!ZNF846;;chr17:38219184..38219195,+!p3@THRA!0.14!1.68!THRA;;chr12:10875351..10875422,-!p4@CSDA!0.14!1.57!CSDA;;chr12:46123273..46123329,+!p3@ARID2!0.14!1.35!ARID2;;chr14:64970427..64970450,-!p5@ZBTB25!0.14!1.35!ZBTB25;;chr19:23941647..23941672,-!p2@ZNF681!0.14!1.23!ZNF681;;chr9:35732312..35732324,+!p4@CREB3!0.14!1.23!CREB3;;chr9:94186085..94186096,-!p3@NFIL3!0.14!1.23!NFIL3;;chr9:2015275..2015287,+!p8@SMARCA2!0.14!1.12!SMARCA2;;chr9:73028638..73028650,-!p7@KLF9!0.14!1.12!KLF9;;chr16:67596336..67596353,+!p4@CTCF!0.14!1.12!CTCF;;chr19:42788611..42788634,+!p2@CIC!0.14!1.12!CIC;;chr19:56152471..56152482,+!p6@ZNF580!0.14!1.12!ZNF580;;chr1:8926441..8926473,-!p10@ENO1!0.14!1.01!ENO1;;chr5:139494553..139494573,+!p6@PURA!0.14!0.90!PURA;;chr20:52210338..52210352,-!p4@ZNF217!0.14!0.67!ZNF217;;chr10:22292509..22292523,-!p4@DNAJC1!0.14!0.67!DNAJC1;;chr14:69262947..69262986,-!p3@ZFP36L1!0.14!0.67!ZFP36L1;;chr19:35759387..35759398,+!p6@USF2!0.14!0.67!USF2;;chr3:14989138..14989151,+!p6@NR2C2!0.14!0.56!NR2C2;;chr12:53845879..53845894,+!p1@PCBP2!0.13!853.86!PCBP2;;chr9:86595503..86595550,-!p2@HNRNPK!0.13!195.92!HNRPK;;chr22:41864662..41864708,-!p1@PHF5A!0.13!52.01!PHF5A;;chr14:105886150..105886224,+!p1@MTA1!0.13!41.36!MTA1;;chr3:183415558..183415649,+!p1@YEATS2!0.13!32.28!YEATS2;;chr19:39390587..39390646,+!p1@NFKBIB!0.13!18.72!NFKBIB;;chr16:29817665..29817719,+!p3@MAZ!0.13!18.05!MAZ;;chr12:132628963..132629027,+!p1@NOC4L!0.13!17.26!NOC4L;;chr19:9251081..9251110,+!p1@ZNF317!0.13!11.32!ZNF317;;chr6:109804412..109804458,-!p1@ZBTB24!0.13!10.09!ZBTB24;;chr7:149194756..149194839,-!p1@ZNF746!0.13!8.85!ZNF746;;chr14:89883509..89883587,-!p2@FOXN3!0.13!7.62!FOXN3;;chr10:104154246..104154347,+!p3@NFKB2!0.13!6.73!NFKB2;;chr19:58144529..58144579,+!p1@ZNF211!0.13!5.83!ZNF211;;chr3:187463179..187463201,-!p2@BCL6!0.13!4.26!BCL6;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.15!TCF3;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.69!ETV2;;chr1:8763463..8763499,-!p6@RERE!0.13!2.58!RERE;;chr19:52674853..52674892,-!p2@ZNF836!0.13!2.47!ZNF836;;chr8:86089369..86089408,+!p1@E2F5!0.13!2.47!E2F5;;chr6:41514005..41514026,+!p3@FOXP4!0.13!1.79!FOXP4;;chr5:178157700..178157734,-!p3@ZNF354A!0.13!1.68!ZNF354A;;chr6:151712732..151712763,-!p3@ZBTB2!0.13!1.68!ZBTB2;;chr8:124286670..124286702,-!p3@ZHX1!0.13!1.23!ZHX1;;chr10:22292675..22292686,-!p3@DNAJC1!0.13!1.23!DNAJC1;;chr19:4066890..4066903,-!p6@ZBTB7A!0.13!1.12!ZBTB7A;;chr12:10875768..10875808,-!p3@CSDA!0.13!1.01!CSDA;;chr11:47270477..47270494,+!p4@NR1H3!0.13!0.90!NR1H3;;chr5:142782823..142782854,-!p3@NR3C1!0.13!0.90!NR3C1;;chr6:45390343..45390388,+!p10@RUNX2!0.13!0.78!RUNX2;;chr8:128747757..128747800,+!p7@MYC!0.13!0.78!MYC;;chr11:57103283..57103290,-!p3@SSRP1!0.13!0.78!SSRP1;;chr12:49413577..49413581,-!p5@MLL2!0.13!0.78!MLL2;;chr14:58765305..58765324,+!p4@ARID4A!0.13!0.67!ARID4A;;chr3:129158696..129158703,-!p4@MBD4!0.13!0.67!MBD4;; | |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.99!95.94!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.92!82.72!TBX21;;chr8:67525443..67525459,-!p2@MYBL1!1.83!97.74!MYBL1;;chr3:27763807..27763822,-!p1@EOMES!1.77!57.72!EOMES;;chr1:25291475..25291511,-!p2@RUNX3!1.66!45.06!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.63!41.36!IRF4;;chr20:50159198..50159299,-!p1@NFATC2!1.54!48.08!NFATC2;;chr2:192015701..192015743,-!p1@STAT4!1.48!40.13!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.46!74.98!AKNA;;chr8:72756063..72756125,-!p1@MSC!1.44!52.79!MSC;;chr14:75988771..75988826,+!p1@BATF!1.43!34.41!BATF;;chr2:231090433..231090469,+!p1@SP140!1.43!25.89!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.41!45.73!RUNX3;;chr8:72756637..72756664,-!p3@MSC!1.35!24.32!MSC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.50!ZBED1;;chr1:158978768..158978800,+!p8@IFI16!1.28!18.16!IFI16;;chr7:137620650..137620677,-!p3@CREB3L2!1.27!17.71!CREB3L2;;chr8:67525473..67525518,-!p1@MYBL1!1.23!35.98!MYBL1;;chr7:50343634..50343717,+!p2@IKZF1!1.20!14.68!IKZF1;;chr20:42543441..42543497,+!p1@TOX2!1.18!63.22!TOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.90!HOXA9;;chr8:72756667..72756736,-!p2@MSC!1.16!21.07!MSC;;chr10:8096772..8096787,+!p2@GATA3!1.16!15.80!GATA3;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.56!PLEK;;chr1:23857698..23857733,-!p1@E2F2!1.14!23.65!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!1.10!11.66!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.09!11.32!ZBTB32;;chr8:60031619..60031676,-!p1@TOX!1.05!22.42!TOX;;chr8:72756023..72756055,-!p6@MSC!1.05!12.89!MSC;;chr17:46703212..46703238,-!p2@HOXB9!1.05!10.20!HOXB9;;chr7:137620684..137620711,-!p4@CREB3L2!1.04!9.86!CREB3L2;;chr16:68119324..68119364,+!p1@NFATC3!1.03!44.27!NFATC3;;chr14:75988831..75988847,+!p2@BATF!1.03!9.64!BATF;;chr15:60884706..60884743,-!p1@RORA!1.02!49.65!RORA;;chr15:74833584..74833626,+!p1@ARID3B!1.01!22.08!ARID3B;;chr2:231090344..231090361,-!p3@SP110!1.01!9.30!SP110;;chr3:18486354..18486377,-!p2@SATB1!1.00!11.32!SATB1;;chr17:46703687..46703740,-!p1@HOXB9!0.98!8.52!HOXB9;;chr7:50343895..50343936,+!p5@IKZF1!0.97!8.41!IKZF1;;chr8:72755987..72756002,-!p7@MSC!0.97!8.41!MSC;;chr7:50344251..50344288,+!p3@IKZF1!0.96!8.18!IKZF1;;chr17:46703942..46703964,-!p4@HOXB9!0.96!8.07!HOXB9;;chr20:56195525..56195556,-!p2@ZBP1!0.95!7.96!ZBP1;;chr2:231090471..231090504,+!p2@SP140!0.95!7.85!SP140;;chr19:19779619..19779670,+!p1@ZNF101!0.94!22.53!ZNF101;;chr8:67525524..67525543,-!p3@MYBL1!0.93!12.78!MYBL1;;chr5:176738887..176738934,-!p1@MXD3!0.92!51.00!MXD3;;chr7:50344289..50344323,+!p1@IKZF1!0.92!7.40!IKZF1;;chr1:212873267..212873332,-!p1@BATF3!0.91!9.75!BATF3;;chr1:25291620..25291635,-!p4@RUNX3!0.91!7.06!RUNX3;;chr1:158979686..158979745,+!p1@IFI16!0.90!240.76!IFI16;;chr20:32274179..32274213,-!p1@E2F1!0.90!48.31!E2F1;;chr13:41593425..41593480,-!p1@ELF1!0.89!45.62!ELF1;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.52!PRDM1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.29!ASH2L;;chr21:47278815..47278834,+!p6@PCBP3!0.87!6.39!PCBP3;;chr7:64838786..64838809,+!p2@ZNF92!0.86!37.32!ZNF92;;chr14:37131058..37131139,+!p1@PAX9!0.86!6.16!PAX9;;chr8:42698194..42698239,-!p2@THAP1!0.85!28.58!THAP1;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.43!BRCA1;;chr4:4291837..4291859,-!p2@LYAR!0.85!20.74!LYAR;;chr7:27190547..27190591,-!p1@HOXA6!0.85!6.05!HOXA6;;chr19:4153613..4153652,+!p1@CREB3L3!0.85!6.05!CREB3L3;;chr19:19729477..19729542,-!p1@PBX4!0.84!13.23!PBX4;;chr7:50348268..50348366,+!p4@IKZF1!0.84!5.94!IKZF1;;chr16:67063036..67063088,+!p1@CBFB!0.83!100.32!CBFB;;chr7:148581327..148581347,-!p2@EZH2!0.83!20.62!EZH2;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.17!GATA3;;chr3:27763613..27763618,-!p6@EOMES!0.83!5.83!EOMES;;chr17:61920280..61920343,-!p2@SMARCD2!0.82!58.84!SMARCD2;;chr20:48599506..48599526,+!p1@SNAI1!0.82!39.01!SNAI1;;chr16:68118689..68118733,+!p3@NFATC3!0.82!15.02!NFATC3;;chr20:31350184..31350200,+!p1@DNMT3B!0.82!12.33!DNMT3B;;chr10:8095593..8095625,+!p3@GATA3!0.82!6.61!GATA3;;chr7:99214559..99214601,+!p1@ZNF498!0.81!73.19!ZNF498;;chr20:42543506..42543549,+!p2@TOX2!0.81!13.79!TOX2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.49!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!0.80!7.29!STAT4;;chr6:100061724..100061753,+!p1@PRDM13!0.80!5.38!PRDM13;;chr7:27196267..27196311,-!p1@HOXA7!0.80!5.38!HOXA7;;chr1:212873084..212873137,-!p2@BATF3!0.80!5.27!BATF3;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.18!MYBL2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.24!EZH2;;chr7:99156212..99156244,+!p3@ZNF655!0.79!21.63!ZNF655;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.83!ISL2;;chr3:27762020..27762023,-!p5@EOMES!0.79!5.16!EOMES;;chr1:92951607..92951661,-!p1@GFI1!0.79!5.16!GFI1;;chr17:7388010..7388017,-!p5@ZBTB4!0.78!8.85!ZBTB4;;chr8:72756267..72756296,-!p4@MSC!0.78!7.62!MSC;;chr15:67391010..67391046,+!p13@SMAD3!0.78!5.04!SMAD3;;chr8:102217679..102217719,-!p2@ZNF706!0.77!18.38!ZNF706;;chr1:158978830..158978851,+!p22@IFI16!0.77!4.93!IFI16;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.39!MYBL2;;chr3:71179699..71179744,-!p2@FOXP1!0.75!37.88!FOXP1;;chr1:158978805..158978820,+!p23@IFI16!0.75!4.60!IFI16;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.48!HOXA9;;chr8:48650697..48650708,-!p2@CEBPD!0.73!36.99!CEBPD;;chr2:148778973..148779035,+!p3@MBD5!0.72!11.88!MBD5;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.71!20.85!TAL1;;chr6:20402102..20402152,+!p1@E2F3!0.71!18.83!E2F3;;chr6:126102292..126102329,+!p3@NCOA7!0.71!14.91!NCOA7;;chr17:40440481..40440550,+!p1@STAT5A!0.70!32.62!STAT5A;;chr1:158985493..158985535,+!p4@IFI16!0.70!6.39!IFI16;;chr7:92076714..92076729,+!p2@GATAD1!0.70!5.16!GATAD1;;chr7:99156249..99156311,+!p1@ZNF655!0.69!100.99!ZNF655;;chr19:45579725..45579743,-!p1@ZNF296!0.69!19.95!ZNF296;;chr1:59249645..59249656,-!p4@JUN!0.69!10.76!JUN;;chr19:33865009..33865090,+!p3@CEBPG!0.69!5.38!CEBPG;;chr11:19263160..19263176,-!p1@E2F8!0.69!4.71!E2F8;;chr17:48045917..48045977,+!p1@DLX4!0.69!3.92!DLX4;;chr1:158978863..158978877,+!p26@IFI16!0.69!3.92!IFI16;;chr8:128748470..128748487,+!p1@MYC!0.68!486.67!MYC;;chr17:35767301..35767344,+!p2@TADA2A!0.68!10.09!TADA2A;;chr17:36861675..36861697,+!p3@MLLT6!0.68!9.75!MLLT6;;chr7:100076765..100076861,-!p1@TSC22D4!0.67!146.72!TSC22D4;;chr17:1958388..1958404,+!p1@HIC1!0.67!27.12!HIC1;;chr20:32274150..32274166,-!p2@E2F1!0.67!7.40!E2F1;;chr20:44600199..44600219,-!p3@ZNF335!0.67!5.16!ZNF335;;chr6:106546731..106546755,+!p5@PRDM1!0.67!3.70!PRDM1;;chr17:7590797..7590815,-!p1@TP53!0.66!180.12!TP53;;chr1:212782094..212782109,+!p1@ATF3!0.66!114.44!ATF3;;chr11:113930425..113930471,+!p1@ZBTB16!0.66!5.49!ZBTB16;;chr20:44600184..44600198,-!p6@ZNF335!0.66!4.26!ZNF335;;chr1:25256439..25256476,-!p3@RUNX3!0.66!3.59!RUNX3;;chr17:38020516..38020544,-!p5@IKZF3!0.66!3.59!IKZF3;;chr19:16435625..16435682,+!p1@KLF2!0.65!131.36!KLF2;;chr10:111967345..111967422,+!p1@MXI1!0.65!66.80!MXI1;;chr9:2015335..2015370,+!p1@SMARCA2!0.65!49.99!SMARCA2;;chr6:31126291..31126399,+!p1@TCF19!0.65!38.11!TCF19;;chr7:99070527..99070542,+!p2@ZNF789!0.65!8.41!ZNF789;;chr1:27023752..27023799,+!p4@ARID1A!0.65!4.82!ARID1A;;chr17:38020392..38020477,-!p1@IKZF3!0.65!3.47!IKZF3;;chr2:8822176..8822196,+!p1@ID2!0.64!557.74!ID2;;chr8:146228270..146228295,-!p1@ZNF252!0.64!21.74!ZNF252P;;chr2:238600933..238600985,+!p3@LRRFIP1!0.64!21.18!LRRFIP1;;chr19:20959098..20959117,+!p1@ZNF66P!0.64!15.92!ZNF66P;;chr6:10412392..10412409,-!p4@TFAP2A!0.64!3.92!TFAP2A;;chr5:131826457..131826514,-!p1@IRF1!0.63!153.33!IRF1;;chr8:41909496..41909512,-!p1@KAT6A!0.63!118.47!KAT6A;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.45!RUNX1;;chr1:212873200..212873230,-!p5@BATF3!0.63!3.25!BATF3;;chr6:100061760..100061774,+!p2@PRDM13!0.63!3.25!PRDM13;;chr2:97202480..97202499,+!p1@ARID5A!0.62!38.45!ARID5A;;chr3:48282587..48282603,+!p1@ZNF589!0.62!16.36!ZNF589;;chr19:24097706..24097731,+!p2@ZNF726!0.62!6.73!ZNF726;;chr8:102217817..102217936,-!p1@ZNF706!0.61!175.75!ZNF706;;chr17:17726907..17726958,-!p2@SREBF1!0.61!22.42!SREBF1;;chr17:46687959..46688007,-!p2@HOXB7!0.61!4.48!HOXB7;;chr16:29818160..29818188,+!p6@MAZ!0.60!16.59!MAZ;;chr14:73360799..73360817,-!p1@DPF3!0.60!12.22!DPF3;;chr3:5020939..5020952,+!p2@BHLHE40!0.60!10.98!BHLHE40;;chr16:3285119..3285133,-!p2@ZNF200!0.60!6.73!ZNF200;;chr1:44679370..44679422,+!p3@DMAP1!0.60!4.15!DMAP1;;chr4:57522166..57522260,-!p2@HOPX!0.60!3.59!HOPX;;chr6:135502408..135502459,+!p2@MYB!0.60!3.59!MYB;;chr2:214015343..214015366,-!p3@IKZF2!0.60!3.03!IKZF2;;chr1:92952473..92952489,-!p3@GFI1!0.60!3.03!GFI1;;chr21:36421347..36421380,-!p8@RUNX1!0.60!3.03!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.60!3.03!HSF5;;chr19:10305581..10305646,-!p1@DNMT1!0.59!122.73!DNMT1;;chr7:77428066..77428132,+!p2@PHTF2!0.59!22.64!PHTF2;;chr7:99070499..99070523,+!p1@ZNF789!0.59!18.49!ZNF789;;chr11:19262461..19262476,-!p5@E2F8!0.59!2.91!E2F8;;chr19:19496728..19496813,+!p2@GATAD2A!0.58!41.25!GATAD2A;;chr14:99738138..99738163,-!p1@BCL11B!0.58!2.80!BCL11B;;chr12:54447637..54447659,+!p4@HOXC4!0.58!2.80!HOXC4;;chr13:114238997..114239077,+!p1@TFDP1!0.57!169.58!TFDP1;;chr7:102985160..102985273,-!p1@DNAJC2!0.57!84.85!DNAJC2;;chr8:124286495..124286548,-!p1@ZHX1!0.57!32.62!ZHX1;;chr12:54447599..54447630,+!p3@HOXC4!0.57!3.47!HOXC4;;chr20:52226313..52226350,-!p3@ZNF217!0.57!2.69!ZNF217;;chr12:57914286..57914304,-!p1@DDIT3!0.56!120.72!DDIT3;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.95!FOXM1;;chr11:128392273..128392308,-!p2@ETS1!0.56!13.56!ETS1;;chr19:36391434..36391450,-!p1@NFKBID!0.56!5.83!NFKBID;;chr7:27135591..27135658,-!p1@HOXA1!0.56!5.72!HOXA1;;chr16:68119440..68119480,+!p4@NFATC3!0.56!4.82!NFATC3;;chr16:67063142..67063153,+!p4@CBFB!0.56!4.15!CBFB;;chr1:158985469..158985489,+!p7@IFI16!0.56!3.25!IFI16;;chr7:99156434..99156510,+!p2@ZNF655!0.55!19.28!ZNF655;;chr8:128747661..128747703,+!p6@MYC!0.55!3.70!MYC;;chr16:68119294..68119305,+!p6@NFATC3!0.55!3.70!NFATC3;;chr11:19262486..19262512,-!p4@E2F8!0.55!3.36!E2F8;;chr2:214013461..214013517,-!p6@IKZF2!0.55!2.58!IKZF2;;chr18:45456930..45456967,-!p2@SMAD2!0.54!17.04!SMAD2;;chr18:72922811..72922827,+!p1@TSHZ1!0.54!15.24!TSHZ1;;chr7:99156314..99156372,+!p4@ZNF655!0.54!9.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;chr4:492909..492968,-!p2@ZNF721!0.14!4.82!ZNF721;;chr16:2059797..2059837,-!p1@ZNF598!0.14!4.37!ZNF598;;chr10:105110890..105110914,-!p2@PCGF6!0.14!3.70!PCGF6;;chr19:12721616..12721640,-!p2@ZNF490!0.14!3.47!ZNF490;;chr1:173837488..173837526,+!p1@ZBTB37!0.14!3.47!ZBTB37;;chr19:45252008..45252024,+!p2@BCL3!0.14!3.36!BCL3;;chr18:45457478..45457517,-!p6@SMAD2!0.14!2.80!SMAD2;;chr12:104532004..104532033,-!p4@NFYB!0.14!2.69!NFYB;;chr19:8942962..8942987,-!p1@ZNF558!0.14!2.58!ZNF558;;chr15:50647347..50647366,-!p3@GABPB1!0.14!2.35!GABPB1;;chr4:57774018..57774040,+!p3@REST!0.14!2.02!REST;;chr19:9879350..9879419,-!p2@ZNF846!0.14!1.79!ZNF846;;chr17:38219184..38219195,+!p3@THRA!0.14!1.68!THRA;;chr12:10875351..10875422,-!p4@CSDA!0.14!1.57!CSDA;;chr12:46123273..46123329,+!p3@ARID2!0.14!1.35!ARID2;;chr14:64970427..64970450,-!p5@ZBTB25!0.14!1.35!ZBTB25;;chr19:23941647..23941672,-!p2@ZNF681!0.14!1.23!ZNF681;;chr9:35732312..35732324,+!p4@CREB3!0.14!1.23!CREB3;;chr9:94186085..94186096,-!p3@NFIL3!0.14!1.23!NFIL3;;chr9:2015275..2015287,+!p8@SMARCA2!0.14!1.12!SMARCA2;;chr9:73028638..73028650,-!p7@KLF9!0.14!1.12!KLF9;;chr16:67596336..67596353,+!p4@CTCF!0.14!1.12!CTCF;;chr19:42788611..42788634,+!p2@CIC!0.14!1.12!CIC;;chr19:56152471..56152482,+!p6@ZNF580!0.14!1.12!ZNF580;;chr1:8926441..8926473,-!p10@ENO1!0.14!1.01!ENO1;;chr5:139494553..139494573,+!p6@PURA!0.14!0.90!PURA;;chr20:52210338..52210352,-!p4@ZNF217!0.14!0.67!ZNF217;;chr10:22292509..22292523,-!p4@DNAJC1!0.14!0.67!DNAJC1;;chr14:69262947..69262986,-!p3@ZFP36L1!0.14!0.67!ZFP36L1;;chr19:35759387..35759398,+!p6@USF2!0.14!0.67!USF2;;chr3:14989138..14989151,+!p6@NR2C2!0.14!0.56!NR2C2;;chr12:53845879..53845894,+!p1@PCBP2!0.13!853.86!PCBP2;;chr9:86595503..86595550,-!p2@HNRNPK!0.13!195.92!HNRPK;;chr22:41864662..41864708,-!p1@PHF5A!0.13!52.01!PHF5A;;chr14:105886150..105886224,+!p1@MTA1!0.13!41.36!MTA1;;chr3:183415558..183415649,+!p1@YEATS2!0.13!32.28!YEATS2;;chr19:39390587..39390646,+!p1@NFKBIB!0.13!18.72!NFKBIB;;chr16:29817665..29817719,+!p3@MAZ!0.13!18.05!MAZ;;chr12:132628963..132629027,+!p1@NOC4L!0.13!17.26!NOC4L;;chr19:9251081..9251110,+!p1@ZNF317!0.13!11.32!ZNF317;;chr6:109804412..109804458,-!p1@ZBTB24!0.13!10.09!ZBTB24;;chr7:149194756..149194839,-!p1@ZNF746!0.13!8.85!ZNF746;;chr14:89883509..89883587,-!p2@FOXN3!0.13!7.62!FOXN3;;chr10:104154246..104154347,+!p3@NFKB2!0.13!6.73!NFKB2;;chr19:58144529..58144579,+!p1@ZNF211!0.13!5.83!ZNF211;;chr3:187463179..187463201,-!p2@BCL6!0.13!4.26!BCL6;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.15!TCF3;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.69!ETV2;;chr1:8763463..8763499,-!p6@RERE!0.13!2.58!RERE;;chr19:52674853..52674892,-!p2@ZNF836!0.13!2.47!ZNF836;;chr8:86089369..86089408,+!p1@E2F5!0.13!2.47!E2F5;;chr6:41514005..41514026,+!p3@FOXP4!0.13!1.79!FOXP4;;chr5:178157700..178157734,-!p3@ZNF354A!0.13!1.68!ZNF354A;;chr6:151712732..151712763,-!p3@ZBTB2!0.13!1.68!ZBTB2;;chr8:124286670..124286702,-!p3@ZHX1!0.13!1.23!ZHX1;;chr10:22292675..22292686,-!p3@DNAJC1!0.13!1.23!DNAJC1;;chr19:4066890..4066903,-!p6@ZBTB7A!0.13!1.12!ZBTB7A;;chr12:10875768..10875808,-!p3@CSDA!0.13!1.01!CSDA;;chr11:47270477..47270494,+!p4@NR1H3!0.13!0.90!NR1H3;;chr5:142782823..142782854,-!p3@NR3C1!0.13!0.90!NR3C1;;chr6:45390343..45390388,+!p10@RUNX2!0.13!0.78!RUNX2;;chr8:128747757..128747800,+!p7@MYC!0.13!0.78!MYC;;chr11:57103283..57103290,-!p3@SSRP1!0.13!0.78!SSRP1;;chr12:49413577..49413581,-!p5@MLL2!0.13!0.78!MLL2;;chr14:58765305..58765324,+!p4@ARID4A!0.13!0.67!ARID4A;;chr3:129158696..129158703,-!p4@MBD4!0.13!0.67!MBD4;; | ||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790,CL:0002425 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10777-110G3 | |id=FF:10777-110G3 | ||
|is_a=CL:0000814;;EFO:0002091;;FF:0000210;;FF:0102504 | |is_a=CL:0000814;;EFO:0002091;;FF:0000210;;FF:0102504 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11867 | |||
|library_id_phase_based=2:CNhs11867 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10777 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10777 | |||
|name=NK T cell leukemia cell line:KHYG-1 | |name=NK T cell leukemia cell line:KHYG-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11867,LSID830,release010,COMPLETED | |profile_hcage=CNhs11867,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.091221887071275,0,-0.15147264853279,0.110190650958854,0,0,0,0,0,0,0,0,0,0,0.087841834467317,0.087841834467317,0,0.0982169068092335,0,0,0,0.467798715041903,0,0.365255128301845,0,0,0.313170678316877,0,0,0,0,0,0,0.5898150725222,0,0,0,0.326510248395875,0,-0.101978799732354,0.0461380391803668,0,0,0,0,0,0,0,0.215610963656898,0,0,0,0.193243100027323,0,-0.0265750786789271,0,0.181001967227439,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.0461380391803668,0,0,0,0,0.087841834467317,0,0,0,0,0,0,0,0,0,0,-0.573645284778267,0,0,0,0.124916099577694,-0.107693034193637,0,0,0.0439209172336585,0,0.0278541324230177,0.0798819110090393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0153108798036163,0,0,0,-0.085688401222906,-0.336533486525035,0.0461380391803668,0,0.160870697824097,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 58: | Line 79: | ||
|rna_tube_id=110G3 | |rna_tube_id=110G3 | ||
|rna_weight_ug=36.16623 | |rna_weight_ug=36.16623 | ||
|rnaseq_library_id=RDhi10082 | |||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0156 | |sample_cell_catalog=jcrb0156 | ||
|sample_cell_line=KHYG-1 | |sample_cell_line=KHYG-1 | ||
Line 80: | Line 103: | ||
|top_motifs=E2F1..5:1.76777210865;RORA:1.71667065527;MYB:1.67925638785;ELF1,2,4:1.52264803499;POU2F1..3:1.5048475823;NFY{A,B,C}:1.44544116374;ZNF148:1.44201998678;TLX2:1.36271898727;RUNX1..3:1.35029789309;PAX3,7:1.30463456862;IKZF2:1.27881306772;ZBTB16:1.27071386673;PBX1:1.17758145375;TOPORS:1.10497393103;AIRE:1.0869710463;ELK1,4_GABP{A,B1}:1.07974960046;NRF1:1.04780225981;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03928311077;PAX4:0.99288572269;PITX1..3:0.926268558028;CRX:0.916302344948;NFIX:0.863974676518;FOXP1:0.812408929552;DMAP1_NCOR{1,2}_SMARC:0.804415247314;NKX3-1:0.795684187808;BREu{core}:0.743963576001;SPI1:0.726249676427;TFDP1:0.708549064608;CDX1,2,4:0.661852129635;YY1:0.653742889195;T:0.60863521867;ETS1,2:0.604800358987;POU1F1:0.581541107031;HOX{A6,A7,B6,B7}:0.555120327073;CEBPA,B_DDIT3:0.515990584977;ALX1:0.513985751059;IRF1,2:0.512827403099;NKX6-1,2:0.506163471355;GATA6:0.484451613514;NR5A1,2:0.483383239855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.457666555624;CUX2:0.437477048961;PAX6:0.35999722093;FOXP3:0.349232586971;MYOD1:0.343550527396;RXRA_VDR{dimer}:0.332306892689;ZNF143:0.315700988088;FOXA2:0.315393591681;HAND1,2:0.312874636701;IRF7:0.308639177064;NKX2-1,4:0.299338233675;FOX{I1,J2}:0.273971545079;SPIB:0.271590715986;ATF5_CREB3:0.268739943242;POU5F1:0.253119763866;CREB1:0.245029120874;PDX1:0.226892615017;STAT5{A,B}:0.214065021138;ZNF384:0.190097633059;HES1:0.163415252327;SOX{8,9,10}:0.157782116699;PPARG:0.132625750553;AHR_ARNT_ARNT2:0.123512965994;GFI1:0.105247640705;FOX{F1,F2,J1}:0.104251331704;OCT4_SOX2{dimer}:0.095256521696;STAT2,4,6:0.0854827379472;PRRX1,2:0.0689537000116;HBP1_HMGB_SSRP1_UBTF:0.0618869445425;ATF4:0.0568752771604;FOXQ1:0.0431621261433;NKX2-2,8:0.0429996100203;BPTF:0.0225723638506;FOXM1:-0.0169758247179;GCM1,2:-0.0193596897061;ZEB1:-0.0295464053194;LEF1_TCF7_TCF7L1,2:-0.0318254363442;FOXD3:-0.0436495377788;EN1,2:-0.0452963727733;EVI1:-0.0507428103488;RFX2..5_RFXANK_RFXAP:-0.0602418385823;bHLH_family:-0.0936831310096;HMGA1,2:-0.105927922023;TGIF1:-0.114900256079;SREBF1,2:-0.140776024559;NFKB1_REL_RELA:-0.157182383054;HNF4A_NR2F1,2:-0.185206679101;MYFfamily:-0.191108905259;NR1H4:-0.197550010232;VSX1,2:-0.19920416453;SNAI1..3:-0.202086268033;HNF1A:-0.209826809001;PAX8:-0.211177766635;PAX2:-0.231134482537;ARID5B:-0.258100628241;UFEwm:-0.324899509621;ZNF238:-0.334735650245;AR:-0.344424927981;NFE2:-0.366280817917;ADNP_IRX_SIX_ZHX:-0.404244266806;FOS_FOS{B,L1}_JUN{B,D}:-0.412634514365;NANOG{mouse}:-0.421378904322;DBP:-0.425614176806;NR6A1:-0.428798440972;ESR1:-0.457772938187;LHX3,4:-0.462732098127;FOSL2:-0.474844431367;NKX2-3_NKX2-5:-0.478161916454;HLF:-0.482891912567;CDC5L:-0.50923897283;SOX5:-0.538192550493;BACH2:-0.557480435046;ATF2:-0.559247927119;NANOG:-0.560423774001;ESRRA:-0.571092543636;MTF1:-0.585294304709;GATA4:-0.607598628611;HSF1,2:-0.608005460617;FOX{D1,D2}:-0.642289118763;HOX{A5,B5}:-0.647497244668;HMX1:-0.65557181828;SRF:-0.661798295186;LMO2:-0.664076188081;TEF:-0.672897059564;RREB1:-0.675173624759;NFE2L1:-0.702093848004;EP300:-0.706530972568;TBP:-0.706771392246;NFE2L2:-0.708190452422;GTF2A1,2:-0.718353702603;POU3F1..4:-0.720070013738;HOXA9_MEIS1:-0.724545225321;FOXO1,3,4:-0.734572419829;SOX2:-0.752515421606;TFAP4:-0.753174163721;NKX3-2:-0.759761391712;ZIC1..3:-0.781162644362;MEF2{A,B,C,D}:-0.790726133668;ZNF423:-0.81741900629;NR3C1:-0.836955763645;REST:-0.838053095289;ALX4:-0.852661721973;ZFP161:-0.853738676917;TAL1_TCF{3,4,12}:-0.897585239728;TFCP2:-0.897820832872;ONECUT1,2:-0.901901275848;HOX{A4,D4}:-0.909347525686;GLI1..3:-0.920080178532;XCPE1{core}:-0.933749107542;NFIL3:-0.938020755189;FOXN1:-0.943412349558;SPZ1:-0.954326586539;ATF6:-0.972404708231;TBX4,5:-0.977199374521;JUN:-0.990136989193;GFI1B:-1.03233202885;STAT1,3:-1.04647028807;RFX1:-1.04731276019;MYBL2:-1.04868745603;KLF4:-1.09588343993;TFAP2B:-1.0985613453;RBPJ:-1.10214652179;SMAD1..7,9:-1.11038896146;POU6F1:-1.13031277339;ZBTB6:-1.13972575748;TP53:-1.1399995865;NFATC1..3:-1.14559814778;SOX17:-1.19615078229;PAX5:-1.2398237084;MAZ:-1.26187382852;PRDM1:-1.262209479;MED-1{core}:-1.26366726691;IKZF1:-1.27125795485;HIC1:-1.28820772686;GZF1:-1.29591699583;EGR1..3:-1.29952580069;NHLH1,2:-1.33019487243;MAFB:-1.34351200923;MTE{core}:-1.38915268445;SP1:-1.41436556028;HIF1A:-1.42896108429;FOXL1:-1.44943769059;GTF2I:-1.46613481382;TEAD1:-1.52943100821;PATZ1:-1.53987172471;PAX1,9:-1.58367022619;RXR{A,B,G}:-1.64503140642;XBP1:-1.7618663683;EBF1:-1.89164429775;TLX1..3_NFIC{dimer}:-1.90190987077;TFAP2{A,C}:-1.91104246983;MZF1:-1.96937369993 | |top_motifs=E2F1..5:1.76777210865;RORA:1.71667065527;MYB:1.67925638785;ELF1,2,4:1.52264803499;POU2F1..3:1.5048475823;NFY{A,B,C}:1.44544116374;ZNF148:1.44201998678;TLX2:1.36271898727;RUNX1..3:1.35029789309;PAX3,7:1.30463456862;IKZF2:1.27881306772;ZBTB16:1.27071386673;PBX1:1.17758145375;TOPORS:1.10497393103;AIRE:1.0869710463;ELK1,4_GABP{A,B1}:1.07974960046;NRF1:1.04780225981;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03928311077;PAX4:0.99288572269;PITX1..3:0.926268558028;CRX:0.916302344948;NFIX:0.863974676518;FOXP1:0.812408929552;DMAP1_NCOR{1,2}_SMARC:0.804415247314;NKX3-1:0.795684187808;BREu{core}:0.743963576001;SPI1:0.726249676427;TFDP1:0.708549064608;CDX1,2,4:0.661852129635;YY1:0.653742889195;T:0.60863521867;ETS1,2:0.604800358987;POU1F1:0.581541107031;HOX{A6,A7,B6,B7}:0.555120327073;CEBPA,B_DDIT3:0.515990584977;ALX1:0.513985751059;IRF1,2:0.512827403099;NKX6-1,2:0.506163471355;GATA6:0.484451613514;NR5A1,2:0.483383239855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.457666555624;CUX2:0.437477048961;PAX6:0.35999722093;FOXP3:0.349232586971;MYOD1:0.343550527396;RXRA_VDR{dimer}:0.332306892689;ZNF143:0.315700988088;FOXA2:0.315393591681;HAND1,2:0.312874636701;IRF7:0.308639177064;NKX2-1,4:0.299338233675;FOX{I1,J2}:0.273971545079;SPIB:0.271590715986;ATF5_CREB3:0.268739943242;POU5F1:0.253119763866;CREB1:0.245029120874;PDX1:0.226892615017;STAT5{A,B}:0.214065021138;ZNF384:0.190097633059;HES1:0.163415252327;SOX{8,9,10}:0.157782116699;PPARG:0.132625750553;AHR_ARNT_ARNT2:0.123512965994;GFI1:0.105247640705;FOX{F1,F2,J1}:0.104251331704;OCT4_SOX2{dimer}:0.095256521696;STAT2,4,6:0.0854827379472;PRRX1,2:0.0689537000116;HBP1_HMGB_SSRP1_UBTF:0.0618869445425;ATF4:0.0568752771604;FOXQ1:0.0431621261433;NKX2-2,8:0.0429996100203;BPTF:0.0225723638506;FOXM1:-0.0169758247179;GCM1,2:-0.0193596897061;ZEB1:-0.0295464053194;LEF1_TCF7_TCF7L1,2:-0.0318254363442;FOXD3:-0.0436495377788;EN1,2:-0.0452963727733;EVI1:-0.0507428103488;RFX2..5_RFXANK_RFXAP:-0.0602418385823;bHLH_family:-0.0936831310096;HMGA1,2:-0.105927922023;TGIF1:-0.114900256079;SREBF1,2:-0.140776024559;NFKB1_REL_RELA:-0.157182383054;HNF4A_NR2F1,2:-0.185206679101;MYFfamily:-0.191108905259;NR1H4:-0.197550010232;VSX1,2:-0.19920416453;SNAI1..3:-0.202086268033;HNF1A:-0.209826809001;PAX8:-0.211177766635;PAX2:-0.231134482537;ARID5B:-0.258100628241;UFEwm:-0.324899509621;ZNF238:-0.334735650245;AR:-0.344424927981;NFE2:-0.366280817917;ADNP_IRX_SIX_ZHX:-0.404244266806;FOS_FOS{B,L1}_JUN{B,D}:-0.412634514365;NANOG{mouse}:-0.421378904322;DBP:-0.425614176806;NR6A1:-0.428798440972;ESR1:-0.457772938187;LHX3,4:-0.462732098127;FOSL2:-0.474844431367;NKX2-3_NKX2-5:-0.478161916454;HLF:-0.482891912567;CDC5L:-0.50923897283;SOX5:-0.538192550493;BACH2:-0.557480435046;ATF2:-0.559247927119;NANOG:-0.560423774001;ESRRA:-0.571092543636;MTF1:-0.585294304709;GATA4:-0.607598628611;HSF1,2:-0.608005460617;FOX{D1,D2}:-0.642289118763;HOX{A5,B5}:-0.647497244668;HMX1:-0.65557181828;SRF:-0.661798295186;LMO2:-0.664076188081;TEF:-0.672897059564;RREB1:-0.675173624759;NFE2L1:-0.702093848004;EP300:-0.706530972568;TBP:-0.706771392246;NFE2L2:-0.708190452422;GTF2A1,2:-0.718353702603;POU3F1..4:-0.720070013738;HOXA9_MEIS1:-0.724545225321;FOXO1,3,4:-0.734572419829;SOX2:-0.752515421606;TFAP4:-0.753174163721;NKX3-2:-0.759761391712;ZIC1..3:-0.781162644362;MEF2{A,B,C,D}:-0.790726133668;ZNF423:-0.81741900629;NR3C1:-0.836955763645;REST:-0.838053095289;ALX4:-0.852661721973;ZFP161:-0.853738676917;TAL1_TCF{3,4,12}:-0.897585239728;TFCP2:-0.897820832872;ONECUT1,2:-0.901901275848;HOX{A4,D4}:-0.909347525686;GLI1..3:-0.920080178532;XCPE1{core}:-0.933749107542;NFIL3:-0.938020755189;FOXN1:-0.943412349558;SPZ1:-0.954326586539;ATF6:-0.972404708231;TBX4,5:-0.977199374521;JUN:-0.990136989193;GFI1B:-1.03233202885;STAT1,3:-1.04647028807;RFX1:-1.04731276019;MYBL2:-1.04868745603;KLF4:-1.09588343993;TFAP2B:-1.0985613453;RBPJ:-1.10214652179;SMAD1..7,9:-1.11038896146;POU6F1:-1.13031277339;ZBTB6:-1.13972575748;TP53:-1.1399995865;NFATC1..3:-1.14559814778;SOX17:-1.19615078229;PAX5:-1.2398237084;MAZ:-1.26187382852;PRDM1:-1.262209479;MED-1{core}:-1.26366726691;IKZF1:-1.27125795485;HIC1:-1.28820772686;GZF1:-1.29591699583;EGR1..3:-1.29952580069;NHLH1,2:-1.33019487243;MAFB:-1.34351200923;MTE{core}:-1.38915268445;SP1:-1.41436556028;HIF1A:-1.42896108429;FOXL1:-1.44943769059;GTF2I:-1.46613481382;TEAD1:-1.52943100821;PATZ1:-1.53987172471;PAX1,9:-1.58367022619;RXR{A,B,G}:-1.64503140642;XBP1:-1.7618663683;EBF1:-1.89164429775;TLX1..3_NFIC{dimer}:-1.90190987077;TFAP2{A,C}:-1.91104246983;MZF1:-1.96937369993 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10777-110G3;search_select_hide=table117:FF:10777-110G3 | |||
}} | }} |
Latest revision as of 15:03, 3 June 2020
Name: | NK T cell leukemia cell line:KHYG-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11867 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11867
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11867
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0626 |
10 | 10 | 0.00474 |
100 | 100 | 0.299 |
101 | 101 | 0.0264 |
102 | 102 | 0.46 |
103 | 103 | 0.477 |
104 | 104 | 0.581 |
105 | 105 | 0.888 |
106 | 106 | 0.4 |
107 | 107 | 0.324 |
108 | 108 | 0.992 |
109 | 109 | 0.0463 |
11 | 11 | 0.041 |
110 | 110 | 0.307 |
111 | 111 | 0.126 |
112 | 112 | 0.479 |
113 | 113 | 0.466 |
114 | 114 | 0.314 |
115 | 115 | 0.489 |
116 | 116 | 0.809 |
117 | 117 | 0.0176 |
118 | 118 | 0.597 |
119 | 119 | 0.505 |
12 | 12 | 0.875 |
120 | 120 | 0.958 |
121 | 121 | 0.976 |
122 | 122 | 0.666 |
123 | 123 | 2.6626e-4 |
124 | 124 | 0.0067 |
125 | 125 | 0.644 |
126 | 126 | 0.484 |
127 | 127 | 0.295 |
128 | 128 | 0.478 |
129 | 129 | 0.625 |
13 | 13 | 0.162 |
130 | 130 | 0.286 |
131 | 131 | 0.491 |
132 | 132 | 0.913 |
133 | 133 | 0.608 |
134 | 134 | 0.776 |
135 | 135 | 0.7 |
136 | 136 | 0.116 |
137 | 137 | 0.584 |
138 | 138 | 0.324 |
139 | 139 | 0.501 |
14 | 14 | 0.756 |
140 | 140 | 0.534 |
141 | 141 | 0.526 |
142 | 142 | 0.665 |
143 | 143 | 3.44943e-4 |
144 | 144 | 0.661 |
145 | 145 | 0.589 |
146 | 146 | 0.944 |
147 | 147 | 0.194 |
148 | 148 | 0.23 |
149 | 149 | 0.193 |
15 | 15 | 0.281 |
150 | 150 | 0.23 |
151 | 151 | 0.983 |
152 | 152 | 0.0492 |
153 | 153 | 0.57 |
154 | 154 | 0.87 |
155 | 155 | 0.0771 |
156 | 156 | 0.84 |
157 | 157 | 0.63 |
158 | 158 | 0.958 |
159 | 159 | 0.404 |
16 | 16 | 0.541 |
160 | 160 | 0.812 |
161 | 161 | 0.232 |
162 | 162 | 0.863 |
163 | 163 | 0.462 |
164 | 164 | 0.76 |
165 | 165 | 0.754 |
166 | 166 | 0.441 |
167 | 167 | 0.0362 |
168 | 168 | 0.642 |
169 | 169 | 0.856 |
17 | 17 | 0.621 |
18 | 18 | 0.315 |
19 | 19 | 0.677 |
2 | 2 | 0.545 |
20 | 20 | 0.405 |
21 | 21 | 0.265 |
22 | 22 | 0.619 |
23 | 23 | 0.663 |
24 | 24 | 0.582 |
25 | 25 | 0.0551 |
26 | 26 | 0.121 |
27 | 27 | 0.576 |
28 | 28 | 0.431 |
29 | 29 | 0.0261 |
3 | 3 | 0.134 |
30 | 30 | 0.135 |
31 | 31 | 0.797 |
32 | 32 | 0.363 |
33 | 33 | 0.418 |
34 | 34 | 0.691 |
35 | 35 | 0.305 |
36 | 36 | 0.0348 |
37 | 37 | 0.371 |
38 | 38 | 0.569 |
39 | 39 | 0.669 |
4 | 4 | 0.0126 |
40 | 40 | 0.0825 |
41 | 41 | 0.467 |
42 | 42 | 0.146 |
43 | 43 | 0.326 |
44 | 44 | 0.317 |
45 | 45 | 0.477 |
46 | 46 | 0.197 |
47 | 47 | 0.0369 |
48 | 48 | 0.135 |
49 | 49 | 0.0105 |
5 | 5 | 0.826 |
50 | 50 | 0.677 |
51 | 51 | 0.931 |
52 | 52 | 0.0664 |
53 | 53 | 0.201 |
54 | 54 | 0.997 |
55 | 55 | 0.522 |
56 | 56 | 0.677 |
57 | 57 | 0.199 |
58 | 58 | 0.102 |
59 | 59 | 0.889 |
6 | 6 | 0.826 |
60 | 60 | 0.923 |
61 | 61 | 0.1 |
62 | 62 | 0.0909 |
63 | 63 | 0.644 |
64 | 64 | 0.121 |
65 | 65 | 0.783 |
66 | 66 | 3.55465e-7 |
67 | 67 | 0.623 |
68 | 68 | 0.643 |
69 | 69 | 0.735 |
7 | 7 | 0.105 |
70 | 70 | 0.324 |
71 | 71 | 0.0387 |
72 | 72 | 0.549 |
73 | 73 | 0.921 |
74 | 74 | 0.817 |
75 | 75 | 0.00855 |
76 | 76 | 0.518 |
77 | 77 | 0.214 |
78 | 78 | 0.305 |
79 | 79 | 0.265 |
8 | 8 | 0.381 |
80 | 80 | 0.862 |
81 | 81 | 0.41 |
82 | 82 | 0.83 |
83 | 83 | 0.7 |
84 | 84 | 0.523 |
85 | 85 | 0.174 |
86 | 86 | 0.279 |
87 | 87 | 0.176 |
88 | 88 | 0.996 |
89 | 89 | 0.185 |
9 | 9 | 0.772 |
90 | 90 | 0.177 |
91 | 91 | 0.346 |
92 | 92 | 0.495 |
93 | 93 | 0.627 |
94 | 94 | 0.358 |
95 | 95 | 0.0164 |
96 | 96 | 0.415 |
97 | 97 | 0.0967 |
98 | 98 | 0.321 |
99 | 99 | 0.384 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11867
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000814 mature NK T cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102504 T-lymphoblastic leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0002127 (innate effector T cell)
0000911 (effector T cell)
0000814 (mature NK T cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102504 (T-lymphoblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100773 (lymphoblastoid cell line sample)
0100739 (lymphoblastic leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)