FF:12237-129G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00006009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00006009 | ||
|accession_numbers=CAGE;DRX008539;DRR009411;DRZ000836;DRZ002221;DRZ012186;DRZ013571 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037012;DRR041378;DRZ007020 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:111314186..111314204,-!p1@ZBED2!2.68!475.48!ZBED2;;chr10:8096631..8096660,+!p1@GATA3!2.21!194.74!GATA3;;chr5:153857778..153857794,-!p1@HAND1!2.11!128.70!HAND1;;chr19:46801639..46801699,+!p1@HIF3A!1.95!88.16!HIF3A;;chr19:45971246..45971265,+!p1@FOSB!1.94!1511.23!FOSB;;chr6:19837592..19837621,+!p1@ID4!1.93!490.54!ID4;;chr2:19558373..19558392,-!p1@OSR1!1.90!207.03!OSR1;;chr20:39317868..39317884,-!p1@MAFB!1.85!781.11!MAFB;;chr4:188916918..188916942,+!p1@ZFP42!1.83!66.35!ZFP42;;chr3:111314230..111314241,-!p2@ZBED2!1.71!50.07!ZBED2;;chr17:7493405..7493419,-!p1@SOX15!1.68!47.00!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.67!50.99!IRF6;;chr1:38512457..38512474,-!p1@POU3F1!1.64!46.38!POU3F1;;chr12:52445218..52445237,+!p1@NR4A1!1.60!463.81!NR4A1;;chr9:110252035..110252057,-!p1@KLF4!1.58!565.79!KLF4;;chr10:8096772..8096787,+!p2@GATA3!1.58!43.62!GATA3;;chr1:212782094..212782109,+!p1@ATF3!1.55!899.37!ATF3;;chr11:65554528..65554546,+!p1@OVOL1!1.55!34.40!OVOL1;;chr8:102504651..102504683,+!p1@GRHL2!1.53!33.17!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.24!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.79!IRX2;;chr3:32023232..32023273,+!p1@ZNF860!1.48!41.16!ZNF860;;chr20:55204351..55204377,+!p1@TFAP2C!1.48!37.17!TFAP2C;;chr5:153857800..153857812,-!p2@HAND1!1.48!29.18!HAND1;;chr14:75745523..75745537,+!p1@FOS!1.46!3173.28!FOS;;chr1:2461692..2461710,-!p1@HES5!1.46!27.95!HES5;;chr2:238592039..238592054,+!p4@LRRFIP1!1.45!27.34!LRRFIP1;;chr6:85474299..85474324,-!p1@TBX18!1.44!46.38!TBX18;;chr13:73633131..73633149,+!p1@KLF5!1.40!246.04!KLF5;;chr9:110251836..110251887,-!p4@KLF4!1.39!30.72!KLF4;;chr1:201979743..201979762,+!p1@ELF3!1.36!21.81!ELF3;;chr6:85473156..85473210,-!p2@TBX18!1.33!24.88!TBX18;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr4:174450089..174450153,-!p2@HAND2!1.32!19.97!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.30!18.74!HAND2;;chr6:10419768..10419819,-!p6@TFAP2A!1.29!18.43!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.37!EPAS1;;chr13:45010939..45011033,-!p1@TSC22D1!1.26!1087.35!TSC22D1;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!27.64!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.25!19.66!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.59!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!1.23!15.97!MAFK;;chr8:102504690..102504704,+!p3@GRHL2!1.23!15.97!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.21!15.36!ZNF750;;chr11:65554563..65554576,+!p2@OVOL1!1.20!14.74!OVOL1;;chr17:38256799..38256815,-!p3@NR1D1!1.19!26.11!NR1D1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.18!123.17!PPP1R13L;;chrX:56258844..56258882,+!p1@KLF8!1.18!19.35!KLF8;;chrX:107018969..107019024,-!p6@TSC22D3!1.17!19.04!TSC22D3;;chr17:38256822..38256851,-!p1@NR1D1!1.16!105.36!NR1D1;;chr9:110250697..110250738,-!p2@KLF4!1.16!15.97!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!1.16!13.52!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.15!13.21!ELF3;;chr6:10419824..10419840,-!p9@TFAP2A!1.12!12.29!TFAP2A;;chr3:71630690..71630750,-!p11@FOXP1!1.11!19.97!FOXP1;;chr21:36260773..36260804,-!p7@RUNX1!1.11!15.97!RUNX1;;chr14:75746722..75746777,+!p2@FOS!1.11!15.36!FOS;;chr5:2751785..2751808,-!p2@IRX2!1.11!11.98!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!1.10!11.67!ZNF668;;chr8:102504979..102505010,+!p2@GRHL2!1.09!11.36!GRHL2;;chr2:16080659..16080685,+!p1@MYCN!1.08!11.06!MYCN;;chr6:12008986..12009016,+!p3@HIVEP1!1.05!32.25!HIVEP1;;chr17:48072574..48072597,-!p1@DLX3!1.05!10.14!DLX3;;chr1:209979411..209979433,-!p2@IRF6!1.05!10.14!IRF6;;chr2:214015343..214015366,-!p3@IKZF2!1.05!10.14!IKZF2;;chr7:1577111..1577132,+!p4@MAFK!1.03!11.06!MAFK;;chr1:23694556..23694584,-!p6@ZNF436!1.02!12.29!ZNF436;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.52!SOX11;;chr16:73082004..73082033,-!p5@ZFHX3!1.01!15.05!ZFHX3;;chr2:10091815..10091864,+!p1@GRHL1!1.00!11.98!GRHL1;;chr5:153857819..153857824,-!p3@HAND1!1.00!8.91!HAND1;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!55.90!CSRNP1;;chr17:7492684..7492778,-!p2@SOX15!0.99!19.04!SOX15;;chr14:75988771..75988826,+!p1@BATF!0.99!11.67!BATF;;chr19:21203481..21203504,+!p2@ZNF430!0.98!20.27!ZNF430;;chr19:45579725..45579743,-!p1@ZNF296!0.97!38.70!ZNF296;;chr8:57123815..57123867,-!p1@PLAG1!0.97!35.02!PLAG1;;chr15:60884706..60884743,-!p1@RORA!0.96!43.00!RORA;;chr9:110252074..110252079,-!p3@KLF4!0.96!13.52!KLF4;;chr19:22193731..22193751,-!p1@ZNF208!0.95!7.99!ZNF208;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.99!ZFY;;chr12:53625966..53626012,-!p2@RARG!0.94!21.19!RARG;;chr10:48355030..48355090,+!p1@ZNF488!0.94!10.14!ZNF488;;chr3:141087454..141087465,+!p19@ZBTB38!0.94!7.68!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.93!31.02!EGR1;;chr1:59249707..59249727,-!p1@JUN!0.92!323.44!JUN;;chr19:11925071..11925113,+!p1@ZNF440!0.92!55.29!ZNF440;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.92!7.37!ZNF676;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.76!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.89!6.76!IRF6;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.21!CENPT;;chr5:137801160..137801176,+!p1@EGR1!0.87!673.91!EGR1;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.45!OVOL2;;chr4:149363494..149363543,-!p1@NR3C2!0.87!6.45!NR3C2;;chr8:49833978..49833996,-!p1@SNAI2!0.85!132.39!SNAI2;;chr6:144329384..144329405,-!p1@PLAGL1!0.85!74.64!PLAGL1;;chr12:51157744..51157796,+!p2@ATF1!0.85!44.85!ATF1;;chr1:204042233..204042249,+!p1@SOX13!0.85!41.16!SOX13;;chr11:2292226..2292270,-!p1@ASCL2!0.85!6.14!ASCL2;;chr8:102504932..102504952,+!p4@GRHL2!0.85!6.14!GRHL2;;chr8:81787006..81787031,-!p2@ZNF704!0.85!6.14!ZNF704;;chr10:111985713..111985774,+!p2@MXI1!0.84!60.82!MXI1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.84!34.09!LRRFIP1;;chr19:12175535..12175554,+!p1@ZNF844!0.83!33.48!ZNF844;;chr19:17356189..17356221,-!p2@NR2F6!0.83!9.83!NR2F6;;chr18:6414884..6414942,-!p1@L3MBTL4!0.83!7.37!L3MBTL4;;chr5:3595961..3595975,+!p3@IRX1!0.83!5.84!IRX1;;chr5:137804405..137804444,+!p3@EGR1!0.82!6.76!EGR1;;chr9:2015335..2015370,+!p1@SMARCA2!0.81!71.57!SMARCA2;;chr1:59249732..59249749,-!p2@JUN!0.81!71.26!JUN;;chr13:41593425..41593480,-!p1@ELF1!0.81!37.17!ELF1;;chr6:12012536..12012554,+!p4@HIVEP1!0.81!13.82!HIVEP1;;chr9:102584159..102584174,+!p2@NR4A3!0.81!10.14!NR4A3;;chr12:10870927..10870966,-!p5@CSDA!0.81!5.53!CSDA;;chrX:107019163..107019179,-!p7@TSC22D3!0.80!6.14!TSC22D3;;chrX:106960285..106960299,-!p1@TSC22D3!0.79!150.82!TSC22D3;;chr8:49833948..49833973,-!p2@SNAI2!0.79!35.32!SNAI2;;chr3:170075103..170075114,+!p5@SKIL!0.79!7.06!SKIL;;chrX:56258885..56258896,+!p5@KLF8!0.79!5.22!KLF8;;chr19:45977993..45978005,+!p6@FOSB!0.79!5.22!FOSB;;chr10:8097321..8097348,+!p4@GATA3!0.79!5.22!GATA3;;chr14:75745247..75745251,+!p14@FOS!0.79!5.22!FOS;;chr5:3595977..3595999,+!p1@IRX1!0.79!5.22!IRX1;;chr16:30102849..30102865,-!p2@TBX6!0.79!5.22!TBX6;;chr19:21579908..21579949,+!p1@ZNF493!0.78!33.17!ZNF493;;chr19:11959532..11959593,+!p1@ZNF439!0.78!20.89!ZNF439;;chr3:71630980..71631110,-!p3@FOXP1!0.78!19.04!FOXP1;;chr3:71631382..71631413,-!p20@FOXP1!0.78!5.84!FOXP1;;chr1:59249688..59249703,-!p3@JUN!0.77!31.94!JUN;;chr11:113930291..113930339,+!p2@ZBTB16!0.77!8.29!ZBTB16;;chr19:46806868..46806883,+!p3@HIF3A!0.77!4.91!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!0.77!4.91!IRX1;;chr7:101460882..101460923,+!p5@CUX1!0.77!4.91!CUX1;;chr17:70117153..70117174,+!p1@SOX9!0.76!53.75!SOX9;;chr19:12405606..12405629,-!p2@ZNF44!0.76!9.83!ZNF44;;chr13:73636516..73636532,+!p3@KLF5!0.76!5.53!KLF5;;chr6:144329500..144329526,-!p4@PLAGL1!0.75!11.67!PLAGL1;;chr10:77161650..77161661,-!p4@ZNF503!0.75!6.76!ZNF503;;chr17:46622440..46622477,-!p5@HOXB2!0.75!5.22!HOXB2;;chr14:75746781..75746799,+!p6@FOS!0.75!4.61!FOS;;chr7:63505799..63505904,+!p1@ZNF727!0.75!4.61!ZNF727;;chr2:169312725..169312810,+!p1@CERS6!0.74!122.86!CERS6;;chr15:60884747..60884774,-!p3@RORA!0.74!11.98!RORA;;chr5:139487608..139487663,+!p3@PURA!0.73!10.14!PURA;;chr19:45260775..45260838,+!p5@BCL3!0.73!5.84!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.73!5.22!EGR1;;chr21:40177845..40177863,+!p1@ETS2!0.72!287.50!ETS2;;chr2:28615716..28615733,+!p1@FOSL2!0.72!226.38!FOSL2;;chr4:26322419..26322479,+!p2@RBPJ!0.72!58.05!RBPJ;;chr3:128206762..128206781,-!p2@GATA2!0.72!29.49!GATA2;;chr19:21324863..21324874,+!p2@ZNF431!0.72!7.99!ZNF431;;chr2:19558327..19558334,-!p2@OSR1!0.72!4.30!OSR1;;chr1:23694532..23694549,-!p8@ZNF436!0.72!4.30!ZNF436;;chr19:12902289..12902307,+!p1@JUNB!0.71!1066.77!JUNB;;chr10:3824332..3824425,-!p4@KLF6!0.71!7.06!KLF6;;chr6:12009042..12009092,+!p6@HIVEP1!0.71!5.53!HIVEP1;;chr2:101436564..101436647,+!p1@NPAS2!0.70!92.76!NPAS2;;chr4:38665810..38665827,+!p1@KLF3!0.70!66.04!KLF3;;chr19:53193731..53193767,-!p1@ZNF83!0.70!40.55!ZNF83;;chr2:157189180..157189290,-!p1@NR4A2!0.70!23.65!NR4A2;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.70!12.59!ZNF525;;chr19:45977759..45977770,+!p10@FOSB!0.70!3.99!FOSB;;chr19:46800289..46800327,+!p2@HIF3A!0.70!3.99!HIF3A;;chr2:191906489..191906517,-!p6@STAT4!0.70!3.99!STAT4;;chr4:149365827..149365870,-!p5@NR3C2!0.70!3.99!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.70!3.99!KLF8;;chr19:22605136..22605154,-!p1@ZNF98!0.70!3.99!ZNF98;;chr18:45456930..45456967,-!p2@SMAD2!0.69!24.88!SMAD2;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.20!ZBTB38;;chr22:41777927..41777971,+!p1@TEF!0.68!36.24!TEF;;chr19:6110474..6110551,-!p1@RFX2!0.68!26.11!RFX2;;chr10:43134001..43134026,-!p1@ZNF33B!0.68!19.04!ZNF33B;;chr19:52391147..52391218,-!p1@ZNF577!0.68!13.21!ZNF577;;chr19:53636125..53636178,-!p1@ZNF415!0.68!11.98!ZNF415;;chr4:38665769..38665801,+!p2@KLF3!0.67!38.09!KLF3;;chr20:45142154..45142227,-!p1@ZNF334!0.67!7.99!ZNF334;;chr19:45974146..45974170,+!p7@FOSB!0.67!3.69!FOSB;;chr4:149363475..149363492,-!p2@NR3C2!0.67!3.69!NR3C2;;chr10:3824646..3824677,-!p9@KLF6!0.67!3.69!KLF6;;chr16:67198633..67198671,+!p1@HSF4!0.67!3.69!HSF4;;chr17:45928521..45928539,-!p1@SP6!0.67!3.69!SP6;;chr5:121465234..121465263,+!p1@ZNF474!0.67!3.69!ZNF474;;chr1:157108130..157108173,-!p1@ETV3!0.66!29.79!ETV3;;chr13:74708504..74708549,-!p1@KLF12!0.66!18.43!KLF12;;chr17:7382856..7382889,-!p3@ZBTB4!0.66!16.28!ZBTB4;;chr14:64970427..64970457,+!p3@ZBTB1!0.66!7.68!ZBTB1;;chr6:1201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SMARCAL1;;chr19:19516543..19516559,+!p6@GATAD2A!0.24!4.30!GATAD2A;;chr19:23870007..23870022,-!p2@ZNF675!0.24!4.30!ZNF675;;chr10:51565156..51565167,+!p5@NCOA4!0.24!4.30!NCOA4;;chr9:73029219..73029289,-!p2@KLF9!0.24!3.99!KLF9;;chr19:37341752..37341816,+!p1@ZNF345!0.24!3.99!ZNF345;;chr19:37958318..37958365,-!p2@ZNF569!0.24!3.38!ZNF569;;chr12:104531785..104531812,-!p3@NFYB!0.24!3.38!NFYB;;chr5:178450797..178450814,+!p1@ZNF879!0.24!3.38!ZNF879;;chr19:58071166..58071189,-!p2@ZNF550!0.24!3.07!ZNF550;;chr1:33004734..33004807,+!p2@ZBTB8A!0.24!2.15!ZBTB8A;;chr13:46543725..46543747,-!p2@ZC3H13!0.24!2.15!ZC3H13;;chr19:12476469..12476509,-!p2@ZNF442!0.24!1.84!ZNF442;;chr19:37997812..37997866,+!p1@ZNF793!0.24!1.84!ZNF793;;chr18:51751066..51751077,-!p6@MBD2!0.24!1.54!MBD2;;chr6:91006575..91006602,-!p2@BACH2!0.24!1.54!BACH2;;chr19:44037334..44037365,+!p2@ZNF575!0.24!1.54!ZNF575;;chr19:52531585..52531596,-!p2@ZNF614!0.24!1.23!ZNF614;;chr1:164528297..164528309,+!p9@PBX1!0.24!1.23!PBX1;;chr12:51611888..51611917,-!p3@POU6F1!0.24!0.92!POU6F1;;chr16:69419724..69419735,-!p4@TERF2!0.24!0.92!TERF2;;chr19:20748620..20748630,-!p3@ZNF737!0.24!0.92!ZNF737;;chr4:106157017..106157029,+!p7@TET2!0.24!0.92!TET2;;chr15:35280439..35280503,-!p1@ZNF770!0.23!53.14!ZNF770;;chr11:118307179..118307223,+!p1@MLL!0.23!46.38!MLL;;chr19:36706024..36706049,+!p1@ZNF146!0.23!26.72!ZNF146;;chr18:47807845..47807918,-!p1@MBD1!0.23!26.42!MBD1;;chr3:141121164..141121249,+!p1@ZBTB38!0.23!25.80!ZBTB38;;chr19:57791806..57791875,+!p1@ZNF460!0.23!18.43!ZNF460;;chr19:57791328..57791377,+!p2@ZNF460!0.23!18.12!ZNF460;;chr9:73028814..73028895,-!p1@KLF9!0.23!14.74!KLF9;;chr17:36861496..36861586,+!p1@MLLT6!0.23!14.13!MLLT6;;chr19:37064145..37064216,-!p1@ZNF529!0.23!12.29!ZNF529;;chr16:1464688..1464728,-!p1@UNKL!0.23!9.83!UNKL;;chr19:21264991..21265026,+!p1@ZNF714!0.23!9.52!ZNF714;;chr13:27998831..27998851,+!p2@GTF3A!0.23!8.60!GTF3A;;chr21:27107259..27107299,+!p1@GABPA!0.23!8.29!GABPA;;chr6:108882109..108882173,+!p2@FOXO3!0.23!7.68!FOXO3;;chr6:157100031..157100112,+!p2@ARID1B!0.23!7.68!ARID1B;;chr19:59084647..59084721,-!p1@MZF1!0.23!6.76!MZF1;;chr19:12251144..12251181,-!p2@ZNF20!0.23!5.84!ZNF20;;chr5:178157651..178157689,-!p1@ZNF354A!0.23!5.53!ZNF354A;;chr7:148892581..148892604,+!p3@ZNF282!0.23!3.99!ZNF282;;chr5:139493727..139493766,+!p4@PURA!0.23!3.69!PURA;;chr19:52674853..52674892,-!p2@ZNF836!0.23!3.38!ZNF836;;chr14:35872962..35873025,-!p3@NFKBIA!0.23!3.07!NFKBIA;;chr15:74833584..74833626,+!p1@ARID3B!0.23!2.76!ARID3B;;chr12:80084862..80084884,-!p7@PAWR!0.23!2.46!PAWR;;chr1:249153114..249153175,-!p3@ZNF692!0.23!2.15!ZNF692;;chr1:26496459..26496470,+!p2@ZNF593!0.23!2.15!ZNF593;;chr20:25677399..25677433,-!p3@ZNF337!0.23!2.15!ZNF337;;chr19:58666441..58666478,-!p2@ZNF329!0.23!1.84!ZNF329;;chr6:12012249..12012266,+!p5@HIVEP1!0.23!1.84!HIVEP1;;chr9:4300016..4300039,-!p2@GLIS3!0.23!1.84!GLIS3;;chr19:44669280..44669294,+!p4@ZNF226,p4@ZNF234!0.23!1.54!ZNF226;;chr19:56111614..56111634,+!p3@ZNF524!0.23!1.54!ZNF524;;chr19:57078972..57079027,+!p2@ZNF470!0.23!1.54!ZNF470;;chr1:164528588..164528610,+!p8@PBX1!0.23!1.54!PBX1;;chr1:247095162..247095173,-!p3@AHCTF1!0.23!1.54!AHCTF1;;chr15:57025812..57025819,-!p4@ZNF280D!0.23!1.54!ZNF280D;;chr17:38256858..38256866,-!p6@NR1D1!0.23!1.23!NR1D1;;chr18:56531584..56531646,+!p4@ZNF532!0.23!1.23!ZNF532;;chr3:14988878..14988903,+!p7@NR2C2!0.23!1.23!NR2C2;;chr6:35227247..35227280,+!p3@ZNF76!0.23!1.23!ZNF76;;chr11:12696071..12696086,+!p3@TEAD1!0.23!1.23!TEAD1;;chr12:133613902..133613924,+!p4@ZNF84!0.23!1.23!ZNF84;;chr10:3824229..3824253,-!p7@KLF6!0.23!0.92!KLF6;;chr16:69727150..69727178,+!p7@NFAT5!0.23!0.92!NFAT5;;chr18:56530595..56530606,+!p11@ZNF532!0.23!0.92!ZNF532;;chr19:20844356..20844365,-!p3@ZNF626!0.23!0.92!ZNF626;;chr1:8938736..8938756,-!p1@ENO1!0.22!1646.38!ENO1;;chr9:33290491..33290564,+!p1@NFX1!0.22!54.98!NFX1;;chr13:46626847..46626899,-!p1@ZC3H13!0.22!46.38!ZC3H13;; | |expression_enrichment_score=chr3:111314186..111314204,-!p1@ZBED2!2.68!475.48!ZBED2;;chr10:8096631..8096660,+!p1@GATA3!2.21!194.74!GATA3;;chr5:153857778..153857794,-!p1@HAND1!2.11!128.70!HAND1;;chr19:46801639..46801699,+!p1@HIF3A!1.95!88.16!HIF3A;;chr19:45971246..45971265,+!p1@FOSB!1.94!1511.23!FOSB;;chr6:19837592..19837621,+!p1@ID4!1.93!490.54!ID4;;chr2:19558373..19558392,-!p1@OSR1!1.90!207.03!OSR1;;chr20:39317868..39317884,-!p1@MAFB!1.85!781.11!MAFB;;chr4:188916918..188916942,+!p1@ZFP42!1.83!66.35!ZFP42;;chr3:111314230..111314241,-!p2@ZBED2!1.71!50.07!ZBED2;;chr17:7493405..7493419,-!p1@SOX15!1.68!47.00!SOX15;;chr1:209979467..209979494,-!p1@IRF6!1.67!50.99!IRF6;;chr1:38512457..38512474,-!p1@POU3F1!1.64!46.38!POU3F1;;chr12:52445218..52445237,+!p1@NR4A1!1.60!463.81!NR4A1;;chr9:110252035..110252057,-!p1@KLF4!1.58!565.79!KLF4;;chr10:8096772..8096787,+!p2@GATA3!1.58!43.62!GATA3;;chr1:212782094..212782109,+!p1@ATF3!1.55!899.37!ATF3;;chr11:65554528..65554546,+!p1@OVOL1!1.55!34.40!OVOL1;;chr8:102504651..102504683,+!p1@GRHL2!1.53!33.17!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.24!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.79!IRX2;;chr3:32023232..32023273,+!p1@ZNF860!1.48!41.16!ZNF860;;chr20:55204351..55204377,+!p1@TFAP2C!1.48!37.17!TFAP2C;;chr5:153857800..153857812,-!p2@HAND1!1.48!29.18!HAND1;;chr14:75745523..75745537,+!p1@FOS!1.46!3173.28!FOS;;chr1:2461692..2461710,-!p1@HES5!1.46!27.95!HES5;;chr2:238592039..238592054,+!p4@LRRFIP1!1.45!27.34!LRRFIP1;;chr6:85474299..85474324,-!p1@TBX18!1.44!46.38!TBX18;;chr13:73633131..73633149,+!p1@KLF5!1.40!246.04!KLF5;;chr9:110251836..110251887,-!p4@KLF4!1.39!30.72!KLF4;;chr1:201979743..201979762,+!p1@ELF3!1.36!21.81!ELF3;;chr6:85473156..85473210,-!p2@TBX18!1.33!24.88!TBX18;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.58!PEG3;;chr4:174450089..174450153,-!p2@HAND2!1.32!19.97!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.30!18.74!HAND2;;chr6:10419768..10419819,-!p6@TFAP2A!1.29!18.43!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.37!EPAS1;;chr13:45010939..45011033,-!p1@TSC22D1!1.26!1087.35!TSC22D1;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!27.64!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.25!19.66!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.59!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!1.23!15.97!MAFK;;chr8:102504690..102504704,+!p3@GRHL2!1.23!15.97!GRHL2;;chr17:80797886..80797906,-!p1@ZNF750!1.21!15.36!ZNF750;;chr11:65554563..65554576,+!p2@OVOL1!1.20!14.74!OVOL1;;chr17:38256799..38256815,-!p3@NR1D1!1.19!26.11!NR1D1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.18!123.17!PPP1R13L;;chrX:56258844..56258882,+!p1@KLF8!1.18!19.35!KLF8;;chrX:107018969..107019024,-!p6@TSC22D3!1.17!19.04!TSC22D3;;chr17:38256822..38256851,-!p1@NR1D1!1.16!105.36!NR1D1;;chr9:110250697..110250738,-!p2@KLF4!1.16!15.97!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!1.16!13.52!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.15!13.21!ELF3;;chr6:10419824..10419840,-!p9@TFAP2A!1.12!12.29!TFAP2A;;chr3:71630690..71630750,-!p11@FOXP1!1.11!19.97!FOXP1;;chr21:36260773..36260804,-!p7@RUNX1!1.11!15.97!RUNX1;;chr14:75746722..75746777,+!p2@FOS!1.11!15.36!FOS;;chr5:2751785..2751808,-!p2@IRX2!1.11!11.98!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!1.10!11.67!ZNF668;;chr8:102504979..102505010,+!p2@GRHL2!1.09!11.36!GRHL2;;chr2:16080659..16080685,+!p1@MYCN!1.08!11.06!MYCN;;chr6:12008986..12009016,+!p3@HIVEP1!1.05!32.25!HIVEP1;;chr17:48072574..48072597,-!p1@DLX3!1.05!10.14!DLX3;;chr1:209979411..209979433,-!p2@IRF6!1.05!10.14!IRF6;;chr2:214015343..214015366,-!p3@IKZF2!1.05!10.14!IKZF2;;chr7:1577111..1577132,+!p4@MAFK!1.03!11.06!MAFK;;chr1:23694556..23694584,-!p6@ZNF436!1.02!12.29!ZNF436;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.52!SOX11;;chr16:73082004..73082033,-!p5@ZFHX3!1.01!15.05!ZFHX3;;chr2:10091815..10091864,+!p1@GRHL1!1.00!11.98!GRHL1;;chr5:153857819..153857824,-!p3@HAND1!1.00!8.91!HAND1;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!55.90!CSRNP1;;chr17:7492684..7492778,-!p2@SOX15!0.99!19.04!SOX15;;chr14:75988771..75988826,+!p1@BATF!0.99!11.67!BATF;;chr19:21203481..21203504,+!p2@ZNF430!0.98!20.27!ZNF430;;chr19:45579725..45579743,-!p1@ZNF296!0.97!38.70!ZNF296;;chr8:57123815..57123867,-!p1@PLAG1!0.97!35.02!PLAG1;;chr15:60884706..60884743,-!p1@RORA!0.96!43.00!RORA;;chr9:110252074..110252079,-!p3@KLF4!0.96!13.52!KLF4;;chr19:22193731..22193751,-!p1@ZNF208!0.95!7.99!ZNF208;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.99!ZFY;;chr12:53625966..53626012,-!p2@RARG!0.94!21.19!RARG;;chr10:48355030..48355090,+!p1@ZNF488!0.94!10.14!ZNF488;;chr3:141087454..141087465,+!p19@ZBTB38!0.94!7.68!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.93!31.02!EGR1;;chr1:59249707..59249727,-!p1@JUN!0.92!323.44!JUN;;chr19:11925071..11925113,+!p1@ZNF440!0.92!55.29!ZNF440;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.92!7.37!ZNF676;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.76!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.89!6.76!IRF6;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.21!CENPT;;chr5:137801160..137801176,+!p1@EGR1!0.87!673.91!EGR1;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.45!OVOL2;;chr4:149363494..149363543,-!p1@NR3C2!0.87!6.45!NR3C2;;chr8:49833978..49833996,-!p1@SNAI2!0.85!132.39!SNAI2;;chr6:144329384..144329405,-!p1@PLAGL1!0.85!74.64!PLAGL1;;chr12:51157744..51157796,+!p2@ATF1!0.85!44.85!ATF1;;chr1:204042233..204042249,+!p1@SOX13!0.85!41.16!SOX13;;chr11:2292226..2292270,-!p1@ASCL2!0.85!6.14!ASCL2;;chr8:102504932..102504952,+!p4@GRHL2!0.85!6.14!GRHL2;;chr8:81787006..81787031,-!p2@ZNF704!0.85!6.14!ZNF704;;chr10:111985713..111985774,+!p2@MXI1!0.84!60.82!MXI1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.84!34.09!LRRFIP1;;chr19:12175535..12175554,+!p1@ZNF844!0.83!33.48!ZNF844;;chr19:17356189..17356221,-!p2@NR2F6!0.83!9.83!NR2F6;;chr18:6414884..6414942,-!p1@L3MBTL4!0.83!7.37!L3MBTL4;;chr5:3595961..3595975,+!p3@IRX1!0.83!5.84!IRX1;;chr5:137804405..137804444,+!p3@EGR1!0.82!6.76!EGR1;;chr9:2015335..2015370,+!p1@SMARCA2!0.81!71.57!SMARCA2;;chr1:59249732..59249749,-!p2@JUN!0.81!71.26!JUN;;chr13:41593425..41593480,-!p1@ELF1!0.81!37.17!ELF1;;chr6:12012536..12012554,+!p4@HIVEP1!0.81!13.82!HIVEP1;;chr9:102584159..102584174,+!p2@NR4A3!0.81!10.14!NR4A3;;chr12:10870927..10870966,-!p5@CSDA!0.81!5.53!CSDA;;chrX:107019163..107019179,-!p7@TSC22D3!0.80!6.14!TSC22D3;;chrX:106960285..106960299,-!p1@TSC22D3!0.79!150.82!TSC22D3;;chr8:49833948..49833973,-!p2@SNAI2!0.79!35.32!SNAI2;;chr3:170075103..170075114,+!p5@SKIL!0.79!7.06!SKIL;;chrX:56258885..56258896,+!p5@KLF8!0.79!5.22!KLF8;;chr19:45977993..45978005,+!p6@FOSB!0.79!5.22!FOSB;;chr10:8097321..8097348,+!p4@GATA3!0.79!5.22!GATA3;;chr14:75745247..75745251,+!p14@FOS!0.79!5.22!FOS;;chr5:3595977..3595999,+!p1@IRX1!0.79!5.22!IRX1;;chr16:30102849..30102865,-!p2@TBX6!0.79!5.22!TBX6;;chr19:21579908..21579949,+!p1@ZNF493!0.78!33.17!ZNF493;;chr19:11959532..11959593,+!p1@ZNF439!0.78!20.89!ZNF439;;chr3:71630980..71631110,-!p3@FOXP1!0.78!19.04!FOXP1;;chr3:71631382..71631413,-!p20@FOXP1!0.78!5.84!FOXP1;;chr1:59249688..59249703,-!p3@JUN!0.77!31.94!JUN;;chr11:113930291..113930339,+!p2@ZBTB16!0.77!8.29!ZBTB16;;chr19:46806868..46806883,+!p3@HIF3A!0.77!4.91!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!0.77!4.91!IRX1;;chr7:101460882..101460923,+!p5@CUX1!0.77!4.91!CUX1;;chr17:70117153..70117174,+!p1@SOX9!0.76!53.75!SOX9;;chr19:12405606..12405629,-!p2@ZNF44!0.76!9.83!ZNF44;;chr13:73636516..73636532,+!p3@KLF5!0.76!5.53!KLF5;;chr6:144329500..144329526,-!p4@PLAGL1!0.75!11.67!PLAGL1;;chr10:77161650..77161661,-!p4@ZNF503!0.75!6.76!ZNF503;;chr17:46622440..46622477,-!p5@HOXB2!0.75!5.22!HOXB2;;chr14:75746781..75746799,+!p6@FOS!0.75!4.61!FOS;;chr7:63505799..63505904,+!p1@ZNF727!0.75!4.61!ZNF727;;chr2:169312725..169312810,+!p1@CERS6!0.74!122.86!CERS6;;chr15:60884747..60884774,-!p3@RORA!0.74!11.98!RORA;;chr5:139487608..139487663,+!p3@PURA!0.73!10.14!PURA;;chr19:45260775..45260838,+!p5@BCL3!0.73!5.84!BCL3;;chr5:137804357..137804390,+!p4@EGR1!0.73!5.22!EGR1;;chr21:40177845..40177863,+!p1@ETS2!0.72!287.50!ETS2;;chr2:28615716..28615733,+!p1@FOSL2!0.72!226.38!FOSL2;;chr4:26322419..26322479,+!p2@RBPJ!0.72!58.05!RBPJ;;chr3:128206762..128206781,-!p2@GATA2!0.72!29.49!GATA2;;chr19:21324863..21324874,+!p2@ZNF431!0.72!7.99!ZNF431;;chr2:19558327..19558334,-!p2@OSR1!0.72!4.30!OSR1;;chr1:23694532..23694549,-!p8@ZNF436!0.72!4.30!ZNF436;;chr19:12902289..12902307,+!p1@JUNB!0.71!1066.77!JUNB;;chr10:3824332..3824425,-!p4@KLF6!0.71!7.06!KLF6;;chr6:12009042..12009092,+!p6@HIVEP1!0.71!5.53!HIVEP1;;chr2:101436564..101436647,+!p1@NPAS2!0.70!92.76!NPAS2;;chr4:38665810..38665827,+!p1@KLF3!0.70!66.04!KLF3;;chr19:53193731..53193767,-!p1@ZNF83!0.70!40.55!ZNF83;;chr2:157189180..157189290,-!p1@NR4A2!0.70!23.65!NR4A2;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.70!12.59!ZNF525;;chr19:45977759..45977770,+!p10@FOSB!0.70!3.99!FOSB;;chr19:46800289..46800327,+!p2@HIF3A!0.70!3.99!HIF3A;;chr2:191906489..191906517,-!p6@STAT4!0.70!3.99!STAT4;;chr4:149365827..149365870,-!p5@NR3C2!0.70!3.99!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.70!3.99!KLF8;;chr19:22605136..22605154,-!p1@ZNF98!0.70!3.99!ZNF98;;chr18:45456930..45456967,-!p2@SMAD2!0.69!24.88!SMAD2;;chr3:141087393..141087426,+!p3@ZBTB38!0.69!17.20!ZBTB38;;chr22:41777927..41777971,+!p1@TEF!0.68!36.24!TEF;;chr19:6110474..6110551,-!p1@RFX2!0.68!26.11!RFX2;;chr10:43134001..43134026,-!p1@ZNF33B!0.68!19.04!ZNF33B;;chr19:52391147..52391218,-!p1@ZNF577!0.68!13.21!ZNF577;;chr19:53636125..53636178,-!p1@ZNF415!0.68!11.98!ZNF415;;chr4:38665769..38665801,+!p2@KLF3!0.67!38.09!KLF3;;chr20:45142154..45142227,-!p1@ZNF334!0.67!7.99!ZNF334;;chr19:45974146..45974170,+!p7@FOSB!0.67!3.69!FOSB;;chr4:149363475..149363492,-!p2@NR3C2!0.67!3.69!NR3C2;;chr10:3824646..3824677,-!p9@KLF6!0.67!3.69!KLF6;;chr16:67198633..67198671,+!p1@HSF4!0.67!3.69!HSF4;;chr17:45928521..45928539,-!p1@SP6!0.67!3.69!SP6;;chr5:121465234..121465263,+!p1@ZNF474!0.67!3.69!ZNF474;;chr1:157108130..157108173,-!p1@ETV3!0.66!29.79!ETV3;;chr13:74708504..74708549,-!p1@KLF12!0.66!18.43!KLF12;;chr17:7382856..7382889,-!p3@ZBTB4!0.66!16.28!ZBTB4;;chr14:64970427..64970457,+!p3@ZBTB1!0.66!7.68!ZBTB1;;chr6:1201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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor3.CNhs12379.12237-129G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12237-129G5 | |id=FF:12237-129G5 | ||
|is_a=EFO:0002091;;FF:0000010 | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12379 | |||
|library_id_phase_based=2:CNhs12379 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12237 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TTAGGC.12237 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12237 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TTAGGC.12237 | |||
|name=amniotic membrane cells, donor3 | |name=amniotic membrane cells, donor3 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12379,LSID914,release011,COMPLETED | |profile_hcage=CNhs12379,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.261755491193011,0.266907849156363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250792588382839,0,0,0,0,0,0.185678448206338,0,0,0.150679754695533,0,0,0,0,0,0,0,0,0,0.116328982947523,0,0,0.273468894662812,0.203617876205757,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.116328982947523,0.251048107070371,0,0,0.0189853557344258,0,0,0,0,0,0,0,0,0.116328982947523,0,0,0,0,0.116328982947523,0,0,0,0,0,0,0.0301879931583114,0,0,0,-0.134782397552868,0,0,0,0.0943150467553004,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.389302604782501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0776466402340275,0,0,0,0.237437408388686,0.333572857076134,0,0,0.0387196047776043,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 82: | ||
|rna_tube_id=129G5 | |rna_tube_id=129G5 | ||
|rna_weight_ug=16.46892 | |rna_weight_ug=16.46892 | ||
|rnaseq_library_id=SRhi10003.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355 | |top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12237-129G5;search_select_hide=table117:FF:12237-129G5 | |||
}} | }} | ||
Latest revision as of 18:36, 4 June 2020
| Name: | amniotic membrane cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12379 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12379
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12379
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.482 |
| 10 | 10 | 0.43 |
| 100 | 100 | 0.496 |
| 101 | 101 | 0.52 |
| 102 | 102 | 0.628 |
| 103 | 103 | 0.0904 |
| 104 | 104 | 0.548 |
| 105 | 105 | 0.358 |
| 106 | 106 | 0.999 |
| 107 | 107 | 0.781 |
| 108 | 108 | 0.129 |
| 109 | 109 | 0.00101 |
| 11 | 11 | 0.779 |
| 110 | 110 | 0.19 |
| 111 | 111 | 0.422 |
| 112 | 112 | 0.989 |
| 113 | 113 | 5.26573e-4 |
| 114 | 114 | 0.496 |
| 115 | 115 | 0.909 |
| 116 | 116 | 0.0955 |
| 117 | 117 | 0.0149 |
| 118 | 118 | 0.00199 |
| 119 | 119 | 0.784 |
| 12 | 12 | 0.872 |
| 120 | 120 | 0.183 |
| 121 | 121 | 0.291 |
| 122 | 122 | 0.788 |
| 123 | 123 | 0.046 |
| 124 | 124 | 0.0398 |
| 125 | 125 | 0.973 |
| 126 | 126 | 0.683 |
| 127 | 127 | 0.934 |
| 128 | 128 | 0.402 |
| 129 | 129 | 0.317 |
| 13 | 13 | 0.41 |
| 130 | 130 | 0.112 |
| 131 | 131 | 0.0188 |
| 132 | 132 | 0.26 |
| 133 | 133 | 0.0123 |
| 134 | 134 | 0.0413 |
| 135 | 135 | 0.504 |
| 136 | 136 | 0.0132 |
| 137 | 137 | 0.217 |
| 138 | 138 | 0.871 |
| 139 | 139 | 0.405 |
| 14 | 14 | 0.933 |
| 140 | 140 | 0.177 |
| 141 | 141 | 0.653 |
| 142 | 142 | 0.783 |
| 143 | 143 | 0.254 |
| 144 | 144 | 0.615 |
| 145 | 145 | 0.569 |
| 146 | 146 | 0.202 |
| 147 | 147 | 0.984 |
| 148 | 148 | 0.43 |
| 149 | 149 | 0.382 |
| 15 | 15 | 0.789 |
| 150 | 150 | 0.766 |
| 151 | 151 | 0.108 |
| 152 | 152 | 0.0976 |
| 153 | 153 | 0.961 |
| 154 | 154 | 0.589 |
| 155 | 155 | 0.0167 |
| 156 | 156 | 0.204 |
| 157 | 157 | 0.564 |
| 158 | 158 | 0.17 |
| 159 | 159 | 0.858 |
| 16 | 16 | 0.0773 |
| 160 | 160 | 0.155 |
| 161 | 161 | 0.462 |
| 162 | 162 | 0.806 |
| 163 | 163 | 0.0819 |
| 164 | 164 | 0.124 |
| 165 | 165 | 0.345 |
| 166 | 166 | 0.79 |
| 167 | 167 | 0.894 |
| 168 | 168 | 0.617 |
| 169 | 169 | 0.02 |
| 17 | 17 | 0.423 |
| 18 | 18 | 0.809 |
| 19 | 19 | 0.678 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.215 |
| 21 | 21 | 0.244 |
| 22 | 22 | 0.0921 |
| 23 | 23 | 0.169 |
| 24 | 24 | 0.722 |
| 25 | 25 | 0.388 |
| 26 | 26 | 0.982 |
| 27 | 27 | 0.698 |
| 28 | 28 | 0.783 |
| 29 | 29 | 0.0817 |
| 3 | 3 | 0.262 |
| 30 | 30 | 0.252 |
| 31 | 31 | 0.928 |
| 32 | 32 | 0.906 |
| 33 | 33 | 0.526 |
| 34 | 34 | 0.0469 |
| 35 | 35 | 0.0468 |
| 36 | 36 | 0.0624 |
| 37 | 37 | 0.538 |
| 38 | 38 | 0.273 |
| 39 | 39 | 0.365 |
| 4 | 4 | 0.689 |
| 40 | 40 | 0.497 |
| 41 | 41 | 0.932 |
| 42 | 42 | 0.7 |
| 43 | 43 | 0.275 |
| 44 | 44 | 0.969 |
| 45 | 45 | 0.27 |
| 46 | 46 | 0.68 |
| 47 | 47 | 0.689 |
| 48 | 48 | 0.887 |
| 49 | 49 | 0.555 |
| 5 | 5 | 0.992 |
| 50 | 50 | 0.725 |
| 51 | 51 | 0.491 |
| 52 | 52 | 0.552 |
| 53 | 53 | 0.292 |
| 54 | 54 | 0.985 |
| 55 | 55 | 0.571 |
| 56 | 56 | 0.3 |
| 57 | 57 | 0.864 |
| 58 | 58 | 0.929 |
| 59 | 59 | 0.559 |
| 6 | 6 | 0.509 |
| 60 | 60 | 0.878 |
| 61 | 61 | 0.57 |
| 62 | 62 | 0.994 |
| 63 | 63 | 0.567 |
| 64 | 64 | 0.518 |
| 65 | 65 | 0.87 |
| 66 | 66 | 0.561 |
| 67 | 67 | 0.823 |
| 68 | 68 | 0.944 |
| 69 | 69 | 0.0667 |
| 7 | 7 | 0.588 |
| 70 | 70 | 0.0536 |
| 71 | 71 | 0.888 |
| 72 | 72 | 0.216 |
| 73 | 73 | 0.0813 |
| 74 | 74 | 0.131 |
| 75 | 75 | 0.042 |
| 76 | 76 | 0.406 |
| 77 | 77 | 0.212 |
| 78 | 78 | 0.523 |
| 79 | 79 | 0.8 |
| 8 | 8 | 0.572 |
| 80 | 80 | 0.497 |
| 81 | 81 | 0.771 |
| 82 | 82 | 0.979 |
| 83 | 83 | 0.978 |
| 84 | 84 | 0.31 |
| 85 | 85 | 0.0861 |
| 86 | 86 | 0.536 |
| 87 | 87 | 0.547 |
| 88 | 88 | 0.702 |
| 89 | 89 | 0.0865 |
| 9 | 9 | 0.945 |
| 90 | 90 | 0.583 |
| 91 | 91 | 0.302 |
| 92 | 92 | 0.966 |
| 93 | 93 | 0.528 |
| 94 | 94 | 0.879 |
| 95 | 95 | 0.464 |
| 96 | 96 | 0.425 |
| 97 | 97 | 0.143 |
| 98 | 98 | 0.387 |
| 99 | 99 | 0.641 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12379
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
