FF:11563-120D6: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Mast cell, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12566
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	76 years old adult
sex	female
age	76
cell type	mast cell
cell line	NA
company	NA
collaboration	Sven Guhl (Charite Germany)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	BsMC-Q
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005141

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12566		CAGE		DRX008331		DRR009203

Accession ID Hg19

Library id		BAM		CTSS
CNhs12566		DRZ000628		DRZ002013

Accession ID Hg38

Library id		BAM		CTSS
CNhs12566		DRZ011978		DRZ013363

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0421
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.131
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0366
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0.0704
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0366
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0366
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.0366
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0.184
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.11
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.207
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0499
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0127
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0721
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0811
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.101
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.408
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.561
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0366
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0496
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.328
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.102
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0436
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0374
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.178
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.397
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0.795
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12566

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.67082e-6
MA0003.1	MA0003.1	0.529
MA0004.1	MA0004.1	0.421
MA0006.1	MA0006.1	0.774
MA0007.1	MA0007.1	0.298
MA0009.1	MA0009.1	0.0817
MA0014.1	MA0014.1	0.841
MA0017.1	MA0017.1	0.163
MA0018.2	MA0018.2	0.106
MA0019.1	MA0019.1	0.691
MA0024.1	MA0024.1	0.247
MA0025.1	MA0025.1	0.267
MA0027.1	MA0027.1	0.83
MA0028.1	MA0028.1	2.42265e-6
MA0029.1	MA0029.1	7.05809e-4
MA0030.1	MA0030.1	0.927
MA0031.1	MA0031.1	0.552
MA0035.2	MA0035.2	1.90822e-15
MA0038.1	MA0038.1	6.30351e-4
MA0039.2	MA0039.2	0.849
MA0040.1	MA0040.1	0.45
MA0041.1	MA0041.1	0.375
MA0042.1	MA0042.1	0.186
MA0043.1	MA0043.1	0.00327
MA0046.1	MA0046.1	0.263
MA0047.2	MA0047.2	0.647
MA0048.1	MA0048.1	0.112
MA0050.1	MA0050.1	4.56198e-5
MA0051.1	MA0051.1	0.0526
MA0052.1	MA0052.1	0.0547
MA0055.1	MA0055.1	0.517
MA0057.1	MA0057.1	0.918
MA0058.1	MA0058.1	0.649
MA0059.1	MA0059.1	0.543
MA0060.1	MA0060.1	0.0299
MA0061.1	MA0061.1	0.55
MA0062.2	MA0062.2	4.4677e-19
MA0065.2	MA0065.2	0.439
MA0066.1	MA0066.1	0.459
MA0067.1	MA0067.1	0.0146
MA0068.1	MA0068.1	0.0298
MA0069.1	MA0069.1	0.872
MA0070.1	MA0070.1	0.0158
MA0071.1	MA0071.1	0.185
MA0072.1	MA0072.1	0.825
MA0073.1	MA0073.1	0.218
MA0074.1	MA0074.1	0.663
MA0076.1	MA0076.1	2.53207e-8
MA0077.1	MA0077.1	0.403
MA0078.1	MA0078.1	0.379
MA0079.2	MA0079.2	0.0482
MA0080.2	MA0080.2	2.29256e-12
MA0081.1	MA0081.1	4.44253e-4
MA0083.1	MA0083.1	7.845e-4
MA0084.1	MA0084.1	0.574
MA0087.1	MA0087.1	0.496
MA0088.1	MA0088.1	0.966
MA0090.1	MA0090.1	4.66919e-6
MA0091.1	MA0091.1	0.236
MA0092.1	MA0092.1	0.815
MA0093.1	MA0093.1	0.677
MA0099.2	MA0099.2	0.125
MA0100.1	MA0100.1	0.0379
MA0101.1	MA0101.1	0.674
MA0102.2	MA0102.2	0.47
MA0103.1	MA0103.1	0.705
MA0104.2	MA0104.2	0.51
MA0105.1	MA0105.1	0.15
MA0106.1	MA0106.1	0.263
MA0107.1	MA0107.1	0.235
MA0108.2	MA0108.2	9.72514e-12
MA0111.1	MA0111.1	0.211
MA0112.2	MA0112.2	0.229
MA0113.1	MA0113.1	0.933
MA0114.1	MA0114.1	0.262
MA0115.1	MA0115.1	0.00473
MA0116.1	MA0116.1	0.0451
MA0117.1	MA0117.1	0.733
MA0119.1	MA0119.1	0.138
MA0122.1	MA0122.1	0.439
MA0124.1	MA0124.1	0.302
MA0125.1	MA0125.1	0.77
MA0131.1	MA0131.1	0.404
MA0135.1	MA0135.1	0.616
MA0136.1	MA0136.1	3.78401e-13
MA0137.2	MA0137.2	0.527
MA0138.2	MA0138.2	0.903
MA0139.1	MA0139.1	0.0823
MA0140.1	MA0140.1	1.30986e-11
MA0141.1	MA0141.1	0.0575
MA0142.1	MA0142.1	0.904
MA0143.1	MA0143.1	0.795
MA0144.1	MA0144.1	0.59
MA0145.1	MA0145.1	0.566
MA0146.1	MA0146.1	0.0037
MA0147.1	MA0147.1	0.348
MA0148.1	MA0148.1	0.29
MA0149.1	MA0149.1	0.322
MA0150.1	MA0150.1	0.715
MA0152.1	MA0152.1	0.121
MA0153.1	MA0153.1	0.0762
MA0154.1	MA0154.1	0.227
MA0155.1	MA0155.1	0.905
MA0156.1	MA0156.1	3.34579e-13
MA0157.1	MA0157.1	0.596
MA0159.1	MA0159.1	0.013
MA0160.1	MA0160.1	0.00556
MA0162.1	MA0162.1	0.00112
MA0163.1	MA0163.1	0.00866
MA0164.1	MA0164.1	0.397
MA0258.1	MA0258.1	0.0675
MA0259.1	MA0259.1	0.404

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12566

Novel motif	Logo	P-value
1	1	0.714
10	10	0.0581
100	100	0.301
101	101	0.349
102	102	0.0725
103	103	0.11
104	104	0.806
105	105	0.789
106	106	0.611
107	107	0.488
108	108	0.0961
109	109	0.00516
11	11	0.287
110	110	0.599
111	111	0.231
112	112	0.0922
113	113	0.0782
114	114	0.0386
115	115	0.845
116	116	0.628
117	117	0.00309
118	118	0.285
119	119	0.895
12	12	0.583
120	120	0.768
121	121	0.214
122	122	0.401
123	123	0.182
124	124	0.848
125	125	0.611
126	126	0.458
127	127	0.345
128	128	0.769
129	129	0.304
13	13	0.775
130	130	0.255
131	131	0.62
132	132	0.705
133	133	0.835
134	134	0.285
135	135	0.0323
136	136	0.0672
137	137	0.0761
138	138	0.19
139	139	0.477
14	14	0.27
140	140	0.272
141	141	0.299
142	142	0.419
143	143	0.588
144	144	0.121
145	145	0.288
146	146	0.857
147	147	0.0671
148	148	0.542
149	149	0.398
15	15	0.129
150	150	0.184
151	151	0.44
152	152	0.673
153	153	0.115
154	154	0.785
155	155	0.0103
156	156	0.921
157	157	0.802
158	158	0.164
159	159	0.986
16	16	0.623
160	160	0.141
161	161	0.797
162	162	0.937
163	163	0.99
164	164	0.337
165	165	0.511
166	166	0.00982
167	167	0.588
168	168	0.46
169	169	0.881
17	17	0.919
18	18	0.405
19	19	0.789
2	2	0.383
20	20	0.572
21	21	0.0173
22	22	0.213
23	23	0.408
24	24	0.0821
25	25	0.32
26	26	0.481
27	27	0.395
28	28	0.199
29	29	0.154
3	3	0.649
30	30	0.137
31	31	0.803
32	32	0.0863
33	33	0.644
34	34	0.958
35	35	0.749
36	36	0.555
37	37	0.165
38	38	0.367
39	39	0.348
4	4	0.868
40	40	0.228
41	41	0.951
42	42	0.618
43	43	0.741
44	44	0.652
45	45	0.976
46	46	0.604
47	47	0.299
48	48	0.345
49	49	0.7
5	5	0.885
50	50	0.483
51	51	0.341
52	52	0.432
53	53	0.489
54	54	0.365
55	55	0.887
56	56	0.563
57	57	0.985
58	58	0.017
59	59	0.628
6	6	0.619
60	60	0.958
61	61	0.0999
62	62	0.047
63	63	0.605
64	64	0.724
65	65	0.939
66	66	0.276
67	67	0.743
68	68	0.339
69	69	0.693
7	7	0.577
70	70	0.729
71	71	0.335
72	72	0.0354
73	73	0.198
74	74	0.121
75	75	0.113
76	76	0.821
77	77	0.224
78	78	0.00907
79	79	0.806
8	8	0.972
80	80	0.707
81	81	0.68
82	82	0.582
83	83	0.839
84	84	0.923
85	85	0.711
86	86	0.193
87	87	0.0833
88	88	0.211
89	89	0.247
9	9	0.891
90	90	0.161
91	91	0.995
92	92	0.791
93	93	0.299
94	94	0.198
95	95	9.01286e-5
96	96	0.415
97	97	0.485
98	98	0.495
99	99	0.336

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12566

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005141
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000004,CL:0000134,CL:0000457,CL:0000738,CL:0000255,CL:0002191,CL:0002031,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000097,CL:0000837,CL:0000831,CL:0002028
+|accession_numbers=CAGE;DRX008331;DRR009203;DRZ000628;DRZ002013;DRZ011978;DRZ013363
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.21!1619.74!GATA2;;chr6:135502501..135502546,+!p1@MYB!1.95!104.51!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.93!83.82!GATA1;;chr12:54694758..54694805,-!p1@NFE2!1.88!89.81!NFE2;;chr14:75988831..75988847,+!p2@BATF!1.87!72.82!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.79!255.96!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.79!61.02!GFI1;;chr9:135854091..135854159,+!p1@GFI1B!1.79!60.05!GFI1B;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.23!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.74!53.97!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.73!56.79!LYL1;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.40!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.69!63.75!BATF;;chr2:68592406..68592424,+!p1@PLEK!1.67!45.34!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.66!44.55!IKZF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.63!41.91!CREB3L2;;chr1:158985493..158985535,+!p4@IFI16!1.55!52.21!IFI16;;chr6:135502408..135502459,+!p2@MYB!1.53!38.12!MYB;;chr21:36421535..36421610,-!p2@RUNX1!1.49!104.34!RUNX1;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.76!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.48!29.50!CREB3L2;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.71!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.41!150.30!GATA2;;chr19:13213662..13213686,-!p1@LYL1!1.38!33.81!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.97!RUNX3;;chr20:46130846..46130869,+!p5@NCOA3!1.33!22.01!NCOA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!19.81!ZBED1;;chr3:128205876..128205904,-!p4@GATA2!1.31!19.63!GATA2;;chr11:128563948..128564003,+!p1@FLI1!1.30!224.08!FLI1;;chr12:48276548..48276564,-!p3@VDR!1.30!19.02!VDR;;chr11:47400045..47400060,-!p6@SPI1!1.30!18.84!SPI1;;chr12:124968706..124968748,-!p18@NCOR2!1.29!18.67!NCOR2;;chr21:36421347..36421380,-!p8@RUNX1!1.28!18.05!RUNX1;;chr6:135502472..135502489,+!p3@MYB!1.27!17.43!MYB;;chr19:13213555..13213568,-!p5@LYL1!1.22!15.58!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.21!57.58!HHEX;;chr14:75988851..75988862,+!p3@BATF!1.21!15.32!BATF;;chr2:145277640..145277771,-!p1@ZEB2!1.20!193.53!ZEB2;;chr19:4067039..4067064,-!p3@ZBTB7A!1.19!41.82!ZBTB7A;;chr18:22932080..22932170,-!p1@ZNF521!1.18!59.78!ZNF521;;chr21:39870339..39870443,-!p1@ERG!1.18!14.26!ERG;;chr1:158985469..158985489,+!p7@IFI16!1.17!16.38!IFI16;;chr17:46621279..46621297,-!p13@HOXB2!1.17!13.82!HOXB2;;chr1:47695003..47695042,-!p2@TAL1!1.16!13.56!TAL1;;chr1:204042233..204042249,+!p1@SOX13!1.15!82.15!SOX13;;chr13:41593425..41593480,-!p1@ELF1!1.14!81.89!ELF1;;chr3:69788576..69788648,+!p1@MITF!1.14!68.24!MITF;;chr21:36421147..36421193,-!p10@RUNX1!1.14!12.77!RUNX1;;chr8:22550982..22550999,-!p1@EGR3!1.13!35.31!EGR3;;chr10:35484053..35484076,+!p1@CREM!1.11!29.67!CREM;;chr6:15401104..15401166,+!p5@JARID2!1.10!11.62!JARID2;;chr13:41635029..41635044,-!p4@ELF1!1.08!23.69!ELF1;;chr21:36421518..36421532,-!p11@RUNX1!1.08!10.92!RUNX1;;chr15:37390850..37390909,-!p3@MEIS2!1.07!21.40!MEIS2;;chr1:92949331..92949377,-!p2@GFI1!1.07!10.74!GFI1;;chr3:5021113..5021180,+!p1@BHLHE40!1.06!736.00!BHLHE40;;chr3:5022272..5022321,+!p7@BHLHE40!1.06!10.48!BHLHE40;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.36!NFE2L2;;chr11:47399996..47400014,-!p4@SPI1!1.04!10.04!SPI1;;chr1:164528410..164528428,+!p1@PBX1!1.03!73.26!PBX1;;chr16:79634624..79634642,-!p1@MAF!1.03!39.18!MAF;;chr3:128205801..128205819,-!p6@GATA2!1.03!9.60!GATA2;;chr7:17338266..17338282,+!p1@AHR!1.02!104.16!AHR;;chr16:68118689..68118733,+!p3@NFATC3!1.02!24.04!NFATC3;;chr2:192015701..192015743,-!p1@STAT4!1.02!13.12!STAT4;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.47!FOXP1;;chr16:88752889..88752921,-!p1@SNAI3!0.99!10.21!SNAI3;;chr16:88752861..88752884,-!p2@SNAI3!0.98!8.63!SNAI3;;chr11:47400062..47400077,-!p2@SPI1!0.98!8.45!SPI1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr8:60031619..60031676,-!p1@TOX!0.96!17.87!TOX;;chr16:79633894..79633954,-!p3@MAF!0.95!15.50!MAF;;chr3:128205779..128205797,-!p5@GATA2!0.94!7.66!GATA2;;chr2:145274900..145274934,-!p4@ZEB2!0.93!47.55!ZEB2;;chr1:158985457..158985468,+!p12@IFI16!0.93!7.57!IFI16;;chr11:47400032..47400043,-!p5@SPI1!0.93!7.48!SPI1;;chr3:5021026..5021035,+!p5@BHLHE40!0.92!9.25!BHLHE40;;chr2:178128199..178128245,-!p3@NFE2L2!0.91!39.89!NFE2L2;;chr17:46621311..46621332,-!p8@HOXB2!0.91!9.51!HOXB2;;chr1:205649747..205649751,-!p10@ELK4,p4@SLC45A3!0.91!7.04!ELK4;;chr3:5021191..5021202,+!p3@BHLHE40!0.90!19.19!BHLHE40;;chr16:68119294..68119305,+!p6@NFATC3!0.90!9.51!NFATC3;;chr3:5021268..5021282,+!p4@BHLHE40!0.89!14.26!BHLHE40;;chr3:141150883..141150961,+!p6@ZBTB38!0.89!6.78!ZBTB38;;chr1:92949505..92949543,-!p5@GFI1!0.89!6.78!GFI1;;chr2:8822176..8822196,+!p1@ID2!0.88!983.50!ID2;;chr7:27135591..27135658,-!p1@HOXA1!0.87!12.68!HOXA1;;chr13:41635067..41635100,-!p5@ELF1!0.86!12.33!ELF1;;chr1:44679370..44679422,+!p3@DMAP1!0.86!8.36!DMAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.51!HOXB2;;chr17:38465441..38465481,+!p6@RARA!0.84!7.48!RARA;;chrX:48644976..48644983,+!p2@GATA1!0.84!5.90!GATA1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.19!PBX1;;chr10:94449675..94449694,+!p2@HHEX!0.83!16.47!HHEX;;chr16:68119440..68119480,+!p4@NFATC3!0.83!9.95!NFATC3;;chr2:145271342..145271377,-!p5@ZEB2!0.83!5.81!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!0.82!11.62!DACH1;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.13!BNC2;;chr1:204042275..204042286,+!p4@SOX13!0.82!9.16!SOX13;;chr12:54694738..54694749,-!p5@NFE2!0.82!5.55!NFE2;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.77!HOXB2;;chr9:16870659..16870675,-!p2@BNC2!0.81!6.87!BNC2;;chr1:47697539..47697573,-!p3@TAL1!0.81!5.46!TAL1;;chr3:128207349..128207386,-!p3@GATA2!0.81!5.46!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.46!ATXN7;;chr7:77428066..77428132,+!p2@PHTF2!0.80!37.33!PHTF2;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.80!29.23!ZKSCAN3;;chr1:47696918..47696935,-!p6@TAL1!0.80!5.37!TAL1;;chr1:47697881..47697910,-!p4@TAL1!0.80!5.37!TAL1;;chr19:52074502..52074587,+!p1@ZNF175!0.79!20.34!ZNF175;;chr17:46655704..46655718,-!p2@HOXB4!0.79!7.92!HOXB4;;chr15:37390482..37390572,-!p7@MEIS2!0.79!7.31!MEIS2;;chr1:93812261..93812303,+!p2@DR1!0.79!6.43!DR1;;chr3:5022254..5022271,+!p12@BHLHE40!0.79!5.19!BHLHE40;;chrX:48645010..48645015,+!p3@GATA1!0.79!5.19!GATA1;;chr19:13213465..13213478,-!p7@LYL1!0.79!5.11!LYL1;;chr4:106068026..106068084,+!p1@TET2!0.78!49.84!TET2;;chr20:46130619..46130664,+!p1@NCOA3!0.77!146.51!NCOA3;;chr16:67063211..67063240,+!p2@CBFB!0.77!25.45!CBFB;;chr15:37392616..37392638,-!p2@MEIS2!0.76!16.29!MEIS2;;chr1:204042723..204042784,+!p3@SOX13!0.76!8.28!SOX13;;chr2:192015750..192015793,-!p2@STAT4!0.76!6.60!STAT4;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.46!HOXB2;;chr12:124968655..124968666,-!p48@NCOR2!0.76!4.75!NCOR2;;chr20:46130672..46130686,+!p2@NCOA3!0.75!22.54!NCOA3;;chr9:130954041..130954121,-!p2@CIZ1!0.75!22.10!CIZ1;;chr5:139487608..139487663,+!p3@PURA!0.75!10.57!PURA;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.75!8.19!ELK4;;chr7:127032114..127032163,-!p2@ZNF800!0.75!7.13!ZNF800;;chr11:47399947..47399961,-!p3@SPI1!0.75!4.67!SPI1;;chr19:13213634..13213645,-!p8@LYL1!0.75!4.67!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.75!4.58!LYL1;;chr20:46130827..46130838,+!p8@NCOA3!0.75!4.58!NCOA3;;chr19:4067174..4067200,-!p9@ZBTB7A!0.74!5.55!ZBTB7A;;chr2:48541789..48541874,+!p1@FOXN2!0.73!110.94!FOXN2;;chr9:117150254..117150271,-!p1@AKNA!0.73!12.94!AKNA;;chr17:46675420..46675465,-!p3@HOXB6!0.73!5.19!HOXB6;;chr11:47237922..47237964,+!p4@DDB2!0.73!5.19!DDB2;;chr1:92952473..92952489,-!p3@GFI1!0.73!4.40!GFI1;;chr6:15246261..15246312,+!p1@JARID2!0.72!117.54!JARID2;;chr6:42419649..42419673,-!p3@TRERF1!0.72!7.84!TRERF1;;chr16:68119250..68119293,+!p2@NFATC3!0.71!36.45!NFATC3;;chr3:114866084..114866118,-!p2@ZBTB20!0.71!16.55!ZBTB20;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.18!PBX1;;chr16:3313791..3313834,+!p2@ZNF263!0.71!9.95!ZNF263;;chr19:38085768..38085821,+!p1@ZNF540!0.71!6.52!ZNF540;;chr3:5022174..5022207,+!p8@BHLHE40!0.71!5.02!BHLHE40;;chr1:158985553..158985574,+!p14@IFI16!0.71!4.14!IFI16;;chr7:17338239..17338262,+!p2@AHR!0.70!34.07!AHR;;chr19:36391434..36391450,-!p1@NFKBID!0.70!8.54!NFKBID;;chr19:4066890..4066903,-!p6@ZBTB7A!0.70!6.78!ZBTB7A;;chr16:68120508..68120520,+!p9@NFATC3!0.70!3.96!NFATC3;;chr18:77160282..77160343,+!p2@NFATC1!0.69!27.74!NFATC1;;chr17:46655730..46655791,-!p1@HOXB4!0.69!10.65!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.69!6.60!RARA;;chr16:88519669..88519726,+!p1@ZFPM1!0.68!39.18!ZFPM1;;chr2:145275162..145275202,-!p2@ZEB2!0.68!25.53!ZEB2;;chr16:79634595..79634620,-!p2@MAF!0.68!7.48!MAF;;chr2:231084659..231084721,-!p1@SP110!0.67!99.14!SP110;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.47!ZMAT1;;chr10:94449649..94449664,+!p3@HHEX!0.67!5.72!HHEX;;chr15:37392094..37392116,-!p6@MEIS2!0.67!4.75!MEIS2;;chr1:47691303..47691319,-!p5@TAL1!0.67!3.70!TAL1;;chr21:36260980..36261011,-!p1@RUNX1!0.66!120.80!RUNX1;;chr7:137686791..137686821,-!p1@CREB3L2!0.66!120.45!CREB3L2;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.13!NCOA4;;chr2:25564750..25564807,-!p1@DNMT3A!0.66!15.41!DNMT3A;;chr15:37391271..37391376,-!p5@MEIS2!0.66!7.22!MEIS2;;chr6:144385698..144385742,-!p2@PLAGL1!0.66!4.49!PLAGL1;;chr21:36421401..36421414,-!p16@RUNX1!0.66!3.61!RUNX1;;chr2:61108695..61108753,+!p1@REL!0.65!27.91!REL;;chr11:65687362..65687436,+!p3@DRAP1!0.65!18.23!DRAP1;;chr17:38474489..38474548,+!p1@RARA!0.64!126.26!RARA;;chr19:35759824..35759891,+!p1@USF2!0.64!123.36!USF2;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.48!NFATC1;;chr19:35455110..35455149,-!p1@ZNF792!0.64!7.22!ZNF792;;chr9:116638634..116638664,+!p2@ZNF618!0.64!7.13!ZNF618;;chr7:50343895..50343936,+!p5@IKZF1!0.64!3.35!IKZF1;;chr7:50344144..50344157,+!p6@IKZF1!0.64!3.35!IKZF1;;chr17:46655672..46655697,-!p3@HOXB4!0.64!3.35!HOXB4;;chr6:21593973..21593988,+!p1@SOX4!0.63!140.88!SOX4;;chr7:128577972..128578047,+!p1@IRF5!0.63!5.55!IRF5;;chr8:60031762..60031803,-!p3@TOX!0.63!5.02!TOX;;chr19:18391615..18391637,-!p5@JUND!0.63!4.49!JUND;;chr12:52431016..52431071,+!p4@NR4A1!0.63!3.96!NR4A1;;chr19:13213399..13213414,-!p6@LYL1!0.63!3.26!LYL1;;chr12:11802753..11802834,+!p2@ETV6!0.62!18.40!ETV6;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11563-120D6
 |is_a=EFO:0002091;;FF:0000210;;FF:0000261
 |is_obsolete=
+|library_id=CNhs12566
+|library_id_phase_based=2:CNhs12566
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11563
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11563
 |name=Mast cell, donor1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12566,LSID917,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=120
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=7.77336
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=GATA6:2.89139434134;ALX1:2.09814598283;CRX:1.75849089813;PPARG:1.50742726361;ELF1,2,4:1.37310393388;IKZF2:1.36591737711;SREBF1,2:1.35192251168;HOX{A5,B5}:1.21136575867;RUNX1..3:1.20986102934;SPI1:1.1107470929;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06942221837;RXR{A,B,G}:1.04151332169;EGR1..3:1.03754461523;SPIB:1.00405547019;SPZ1:0.907799753683;NFY{A,B,C}:0.87136885875;YY1:0.852057791645;MYB:0.829953978917;TGIF1:0.76386890687;FOX{I1,J2}:0.759906652816;ZBTB16:0.742597142756;ELK1,4_GABP{A,B1}:0.694245950598;ESRRA:0.683878351015;NR1H4:0.669803211093;HBP1_HMGB_SSRP1_UBTF:0.616277568657;DMAP1_NCOR{1,2}_SMARC:0.6116373501;TLX2:0.606536940039;PAX2:0.591274996607;PBX1:0.58663319161;FOXP3:0.565738716959;IRF1,2:0.546317740078;TFAP4:0.540168585096;PAX4:0.532512335574;ETS1,2:0.527607644293;DBP:0.513211729174;EN1,2:0.504270164018;ONECUT1,2:0.48801755154;NANOG{mouse}:0.467943946296;RXRA_VDR{dimer}:0.451913630051;XBP1:0.425018038942;SMAD1..7,9:0.423679457434;NHLH1,2:0.40565734192;E2F1..5:0.375170025251;RREB1:0.355235524227;ARID5B:0.333253413672;EVI1:0.33163547064;HNF4A_NR2F1,2:0.328256299851;BREu{core}:0.271858783674;ZNF238:0.261314116825;FOXD3:0.261189888877;STAT1,3:0.258249163493;NKX3-2:0.25236060384;FOX{F1,F2,J1}:0.225975247895;CUX2:0.217436024263;FOXA2:0.206122234401;LHX3,4:0.163099739066;PAX5:0.153893699547;NRF1:0.142428645477;TOPORS:0.132963609947;FOXM1:0.121844093663;FOXP1:0.11708549987;POU5F1:0.113076882798;HOXA9_MEIS1:0.106884241419;ZFP161:0.104712195435;AR:0.0940749296295;POU1F1:0.0858625464095;CDX1,2,4:0.0838202329118;GZF1:0.0833704592949;BPTF:0.0799222709532;EP300:0.0563412540359;PITX1..3:0.0243172470385;NKX6-1,2:0.0186160220271;ZNF148:0.015831021208;PAX6:0.0115855986695;SOX{8,9,10}:0.000892481494705;NKX2-2,8:0.000177475137577;IRF7:-0.0260475952832;PRRX1,2:-0.0312278470258;TFDP1:-0.0359519038879;MYFfamily:-0.0547215248494;TFCP2:-0.0573635732698;ZNF143:-0.0602945470002;TFAP2{A,C}:-0.0613461650931;ZNF384:-0.0672785472024;NR6A1:-0.0930824519532;FOSL2:-0.11008684023;NFKB1_REL_RELA:-0.116002326418;GATA4:-0.125568777152;ATF4:-0.126649440703;RFX2..5_RFXANK_RFXAP:-0.167212434397;GLI1..3:-0.167248563308;CREB1:-0.169942618568;HAND1,2:-0.173096471171;NFE2L1:-0.19874122994;POU2F1..3:-0.201469669398;T:-0.205085068581;ATF5_CREB3:-0.224401079776;NFE2:-0.225122877136;OCT4_SOX2{dimer}:-0.225123704483;FOXO1,3,4:-0.226092264969;REST:-0.229709099066;NR5A1,2:-0.23354403588;FOXN1:-0.250254123855;TFAP2B:-0.25279531898;XCPE1{core}:-0.256258359501;NKX3-1:-0.26971847839;MTF1:-0.277394699943;RORA:-0.286394730523;NFE2L2:-0.297018385059;bHLH_family:-0.298091072425;NKX2-3_NKX2-5:-0.303505164391;HMGA1,2:-0.313274747024;FOXQ1:-0.3210814771;NR3C1:-0.330723205623;PAX8:-0.333201578112;FOS_FOS{B,L1}_JUN{B,D}:-0.3400207786;PRDM1:-0.348426376828;MAFB:-0.378546462712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381086898325;NFATC1..3:-0.382413923199;PAX3,7:-0.382633723251;MEF2{A,B,C,D}:-0.386642100476;ZIC1..3:-0.387332503468;AIRE:-0.390366694354;SOX17:-0.394208800968;POU6F1:-0.409492673396;BACH2:-0.415763000634;FOX{D1,D2}:-0.418311991908;HOX{A6,A7,B6,B7}:-0.419149675299;HLF:-0.438645470435;STAT5{A,B}:-0.470029213497;ADNP_IRX_SIX_ZHX:-0.491704674677;ZBTB6:-0.492011984793;ZEB1:-0.492737029581;ESR1:-0.493336435321;ATF2:-0.497160920144;MAZ:-0.505152240589;HIC1:-0.505298207235;SOX5:-0.512613180958;GTF2I:-0.529838036878;HMX1:-0.546382939297;SNAI1..3:-0.551387932203;HNF1A:-0.553899669959;EBF1:-0.55588368351;SP1:-0.620030183782;PAX1,9:-0.647833912032;PATZ1:-0.665346961302;TEF:-0.670641885835;MYOD1:-0.675067048849;UFEwm:-0.727390200016;IKZF1:-0.735750128002;GFI1:-0.747360295112;HOX{A4,D4}:-0.767556721095;ZNF423:-0.794673756655;MED-1{core}:-0.802128565219;TP53:-0.877704382732;MZF1:-0.877828990235;NANOG:-0.909518035545;AHR_ARNT_ARNT2:-0.921521745785;SOX2:-0.930715148521;TAL1_TCF{3,4,12}:-0.933382269349;VSX1,2:-0.95065208478;STAT2,4,6:-0.974171837413;HES1:-0.978716346114;RBPJ:-0.987156692897;MTE{core}:-1.00768585798;NFIL3:-1.01314814917;TEAD1:-1.05293205723;HIF1A:-1.0539124518;SRF:-1.05677725999;KLF4:-1.06891322534;RFX1:-1.11045093528;CEBPA,B_DDIT3:-1.12779192214;LEF1_TCF7_TCF7L1,2:-1.17949947234;NFIX:-1.18597275432;GTF2A1,2:-1.19826850843;TLX1..3_NFIC{dimer}:-1.26853384205;JUN:-1.27438967998;LMO2:-1.28913802348;HSF1,2:-1.33903157862;ATF6:-1.37445833356;MYBL2:-1.39554694041;ALX4:-1.39746085608;POU3F1..4:-1.42416908171;GCM1,2:-1.448750051;NKX2-1,4:-1.48788470718;TBP:-1.49364403937;CDC5L:-1.61366577441;TBX4,5:-1.62789104293;GFI1B:-1.79798372753;FOXL1:-1.8517421146;PDX1:-2.04904107229
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11563-120D6;search_select_hide=table117:FF:11563-120D6
 }}

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FF:11563-120D6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0