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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005281
|accession_numbers=CAGE;DRX008559;DRR009431;DRZ000856;DRZ002241;DRZ012206;DRZ013591
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000274
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.47!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!78.16!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.20!14.89!BARX1;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.61!GATA6;;chr21:36260773..36260804,-!p7@RUNX1!1.15!17.55!RUNX1;;chr12:66218598..66218645,+!p2@HMGA2!1.13!57.16!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.96!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!1.02!20.20!C11orf9;;chr16:31076332..31076388,-!p3@ZNF668!1.01!9.30!ZNF668;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.61!HOXB2;;chr5:142780189..142780223,-!p6@NR3C1!0.95!7.98!NR3C1;;chr7:44143925..44143970,+!p1@AEBP1!0.94!179.71!AEBP1;;chr15:96874927..96874938,+!p8@NR2F2!0.94!17.01!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.71!HOXB6;;chr1:151032860..151032918,+!p1@MLLT11!0.93!92.51!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.93!15.68!BHLHE40;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.44!HAND2;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.44!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!0.91!19.67!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.18!MAFK;;chr18:19749541..19749557,+!p1@GATA6!0.90!22.60!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.96!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.64!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.71!BNC1;;chr10:64576105..64576133,-!p1@EGR2!0.87!13.56!EGR2;;chr9:96717678..96717689,-!p2@BARX1!0.87!6.38!BARX1;;chr7:26191809..26191890,+!p1@NFE2L3!0.86!32.96!NFE2L3;;chr17:46655704..46655718,-!p2@HOXB4!0.86!9.57!HOXB4;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.43!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.51!BHLHE41;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.11!RFX8;;chr17:46675420..46675465,-!p3@HOXB6!0.84!6.91!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.84!5.85!HOXC4;;chr8:72756063..72756125,-!p1@MSC!0.83!12.23!MSC;;chr15:96874145..96874166,+!p7@NR2F2!0.82!11.17!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.82!5.58!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.71!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.30!FOXD1;;chr7:27183263..27183284,-!p2@HOXA5!0.80!5.32!HOXA5;;chr8:55370487..55370503,+!p1@SOX17!0.80!5.32!SOX17;;chr17:46621279..46621297,-!p13@HOXB2!0.80!5.32!HOXB2;;chr7:44143997..44144008,+!p3@AEBP1!0.78!6.65!AEBP1;;chr17:46690839..46690884,-!p1@HOXB8!0.78!5.05!HOXB8;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.30!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.77!7.44!MSC;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.34!RUNX1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.79!HOXA5;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.13!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.27!DRAP1;;chr12:54447599..54447630,+!p3@HOXC4!0.75!5.85!HOXC4;;chr5:92918919..92918942,+!p1@NR2F1!0.74!22.33!NR2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.68!TWIST2;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.05!CREB3L1;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.65!HOXB7;;chr12:66218836..66218888,+!p1@HMGA2!0.72!44.13!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.72!18.87!EGR1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.79!PRRX1;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.25!HOXC9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.94!PPP1R13L;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.85!PRRX1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.58!HOXB2;;chr16:54320617..54320643,-!p3@IRX3!0.70!5.32!IRX3;;chr20:50179368..50179392,-!p2@NFATC2!0.70!5.32!NFATC2;;chr2:102091478..102091490,-!p3@RFX8!0.70!3.99!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.99!HAND2;;chr5:142780237..142780261,-!p7@NR3C1!0.70!3.99!NR3C1;;chr12:54394309..54394336,+!p2@HOXC9!0.70!3.99!HOXC9;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.65!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.69!6.65!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.69!6.38!HOXB2;;chr15:96881221..96881240,+!p19@NR2F2!0.69!5.32!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.25!NR2F1;;chr12:77459306..77459365,-!p1@E2F7!0.67!53.70!E2F7;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.11!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.67!4.79!FOXF1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.66!10.10!TWIST1;;chr21:36260343..36260402,-!p6@RUNX1!0.66!6.11!RUNX1;;chr19:31840130..31840160,-!p2@TSHZ3!0.66!5.85!TSHZ3;;chr10:63809106..63809127,+!p1@ARID5B!0.65!55.03!ARID5B;;chr15:96874012..96874042,+!p2@NR2F2!0.65!36.69!NR2F2;;chr3:141087393..141087426,+!p3@ZBTB38!0.65!15.95!ZBTB38;;chr21:30671690..30671762,+!p2@BACH1!0.65!13.56!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.30!NR2F2;;chr17:46675558..46675577,-!p2@HOXB6!0.65!3.46!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.46!HOXC5;;chr12:80085120..80085156,-!p14@PAWR!0.65!3.46!PAWR;;chr19:45971246..45971265,+!p1@FOSB!0.64!73.90!FOSB;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.11!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.79!NR2F2;;chr19:42636586..42636607,-!p1@POU2F2!0.63!10.37!POU2F2;;chr1:1510328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|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.47!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.21!78.16!CREB3L1;;chr9:96717629..96717644,-!p1@BARX1!1.20!14.89!BARX1;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.61!GATA6;;chr21:36260773..36260804,-!p7@RUNX1!1.15!17.55!RUNX1;;chr12:66218598..66218645,+!p2@HMGA2!1.13!57.16!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.96!PRRX1;;chr11:61520075..61520136,+!p1@C11orf9!1.02!20.20!C11orf9;;chr16:31076332..31076388,-!p3@ZNF668!1.01!9.30!ZNF668;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.61!HOXB2;;chr5:142780189..142780223,-!p6@NR3C1!0.95!7.98!NR3C1;;chr7:44143925..44143970,+!p1@AEBP1!0.94!179.71!AEBP1;;chr15:96874927..96874938,+!p8@NR2F2!0.94!17.01!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.71!HOXB6;;chr1:151032860..151032918,+!p1@MLLT11!0.93!92.51!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.93!15.68!BHLHE40;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.44!HAND2;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.44!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!0.91!19.67!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.18!MAFK;;chr18:19749541..19749557,+!p1@GATA6!0.90!22.60!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.96!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.64!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.71!BNC1;;chr10:64576105..64576133,-!p1@EGR2!0.87!13.56!EGR2;;chr9:96717678..96717689,-!p2@BARX1!0.87!6.38!BARX1;;chr7:26191809..26191890,+!p1@NFE2L3!0.86!32.96!NFE2L3;;chr17:46655704..46655718,-!p2@HOXB4!0.86!9.57!HOXB4;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.43!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.51!BHLHE41;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.11!RFX8;;chr17:46675420..46675465,-!p3@HOXB6!0.84!6.91!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.84!5.85!HOXC4;;chr8:72756063..72756125,-!p1@MSC!0.83!12.23!MSC;;chr15:96874145..96874166,+!p7@NR2F2!0.82!11.17!NR2F2;;chr17:46621146..46621180,-!p10@HOXB2!0.82!5.58!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.71!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.30!FOXD1;;chr7:27183263..27183284,-!p2@HOXA5!0.80!5.32!HOXA5;;chr8:55370487..55370503,+!p1@SOX17!0.80!5.32!SOX17;;chr17:46621279..46621297,-!p13@HOXB2!0.80!5.32!HOXB2;;chr7:44143997..44144008,+!p3@AEBP1!0.78!6.65!AEBP1;;chr17:46690839..46690884,-!p1@HOXB8!0.78!5.05!HOXB8;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.30!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.77!7.44!MSC;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.34!RUNX1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.79!HOXA5;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.13!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.27!DRAP1;;chr12:54447599..54447630,+!p3@HOXC4!0.75!5.85!HOXC4;;chr5:92918919..92918942,+!p1@NR2F1!0.74!22.33!NR2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.68!TWIST2;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.05!CREB3L1;;chr17:46688334..46688385,-!p1@HOXB7!0.73!6.65!HOXB7;;chr12:66218836..66218888,+!p1@HMGA2!0.72!44.13!HMGA2;;chr5:137804484..137804498,+!p2@EGR1!0.72!18.87!EGR1;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.79!PRRX1;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.25!HOXC9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.94!PPP1R13L;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.85!PRRX1;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.58!HOXB2;;chr16:54320617..54320643,-!p3@IRX3!0.70!5.32!IRX3;;chr20:50179368..50179392,-!p2@NFATC2!0.70!5.32!NFATC2;;chr2:102091478..102091490,-!p3@RFX8!0.70!3.99!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.70!3.99!HAND2;;chr5:142780237..142780261,-!p7@NR3C1!0.70!3.99!NR3C1;;chr12:54394309..54394336,+!p2@HOXC9!0.70!3.99!HOXC9;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.65!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.69!6.65!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.69!6.38!HOXB2;;chr15:96881221..96881240,+!p19@NR2F2!0.69!5.32!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.25!NR2F1;;chr12:77459306..77459365,-!p1@E2F7!0.67!53.70!E2F7;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.11!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.67!4.79!FOXF1;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.72!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.66!10.10!TWIST1;;chr21:36260343..36260402,-!p6@RUNX1!0.66!6.11!RUNX1;;chr19:31840130..31840160,-!p2@TSHZ3!0.66!5.85!TSHZ3;;chr10:63809106..63809127,+!p1@ARID5B!0.65!55.03!ARID5B;;chr15:96874012..96874042,+!p2@NR2F2!0.65!36.69!NR2F2;;chr3:141087393..141087426,+!p3@ZBTB38!0.65!15.95!ZBTB38;;chr21:30671690..30671762,+!p2@BACH1!0.65!13.56!BACH1;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.30!NR2F2;;chr17:46675558..46675577,-!p2@HOXB6!0.65!3.46!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.46!HOXC5;;chr12:80085120..80085156,-!p14@PAWR!0.65!3.46!PAWR;;chr19:45971246..45971265,+!p1@FOSB!0.64!73.90!FOSB;;chr1:151032922..151032951,+!p2@MLLT11!0.64!6.11!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.58!HMGA2;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.79!NR2F2;;chr19:42636586..42636607,-!p1@POU2F2!0.63!10.37!POU2F2;;chr1:1510328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|ffid_belonging_in_development=CL:0000134
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Line 36: Line 41:
|fonse_treatment_closure=
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|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor1.CNhs12374.11758-123H3.hg38.nobarcode.ctss.bed.gz
|id=FF:11758-123H3
|id=FF:11758-123H3
|is_a=EFO:0002091;;FF:0000274
|is_a=EFO:0002091;;FF:0000274
|is_obsolete=
|is_obsolete=
|library_id=CNhs12374
|library_id_phase_based=2:CNhs12374
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11758
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11758
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor1
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12374,LSID914,release011,COMPLETED
|profile_hcage=CNhs12374,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 59: Line 78:
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Line 80: Line 100:
|top_motifs=TAL1_TCF{3,4,12}:2.00565519604;HOX{A5,B5}:1.83875834371;HSF1,2:1.64559556243;EN1,2:1.55093963752;UFEwm:1.50798701702;POU3F1..4:1.46548781448;HMGA1,2:1.3685718148;XBP1:1.35714261215;PAX4:1.3541246862;ALX4:1.22460619518;GZF1:1.11258733382;ESR1:1.09855181263;PAX1,9:1.06846198172;EVI1:1.06817653403;SRF:1.05356107094;NFE2L1:1.03162975444;DBP:1.01991767651;AIRE:1.00869241818;NFATC1..3:0.986913235096;MYBL2:0.914453131977;TP53:0.889294096532;GLI1..3:0.845475382504;NKX3-2:0.842169622764;NKX3-1:0.834086412211;NFE2L2:0.822135782981;RXRA_VDR{dimer}:0.808583148319;ZIC1..3:0.808230666651;ATF6:0.805737835753;KLF4:0.76370444332;FOXM1:0.760337449707;ALX1:0.74192917903;TEAD1:0.740571507196;TBX4,5:0.730814982573;NR3C1:0.730462729214;GATA4:0.729126740906;HES1:0.724779330666;HOX{A4,D4}:0.720951197201;HIF1A:0.718519217479;NKX2-2,8:0.691003690864;CDC5L:0.665208851358;ZBTB16:0.648310405669;ARID5B:0.64722221565;ZNF238:0.641538765922;XCPE1{core}:0.618404884399;IKZF1:0.608154637617;TLX1..3_NFIC{dimer}:0.603373633083;ZNF384:0.553464653549;PRDM1:0.538258449729;POU6F1:0.497293053239;PAX6:0.496277016898;SOX17:0.488999476646;FOX{I1,J2}:0.488766572725;AR:0.482536415052;MAFB:0.479312881473;HLF:0.478459942127;ZBTB6:0.471539738138;EBF1:0.463331604301;TEF:0.45617988075;MTE{core}:0.446518867561;PPARG:0.437339148719;BACH2:0.414055415779;GTF2I:0.403731900871;RXR{A,B,G}:0.358755096934;GFI1B:0.358580216844;TFCP2:0.357519336141;NFIX:0.326590426187;GCM1,2:0.301165314026;FOS_FOS{B,L1}_JUN{B,D}:0.291229875626;TLX2:0.267303670322;CRX:0.265810119082;PAX8:0.257030565283;FOSL2:0.215976639613;HMX1:0.214094715824;TFAP4:0.198789370711;NKX2-1,4:0.184192836625;RUNX1..3:0.178049185639;STAT2,4,6:0.177904295051;ZNF148:0.163223394746;AHR_ARNT_ARNT2:0.162775181674;GTF2A1,2:0.158876763127;TFAP2B:0.140974437432;RFX1:0.131256169852;SMAD1..7,9:0.121961062612;MZF1:0.120667362846;NR6A1:0.115494185405;MAZ:0.0909118023183;HAND1,2:0.0838288915535;ELK1,4_GABP{A,B1}:0.0770358311008;LHX3,4:0.0721080283623;ONECUT1,2:0.0691381597542;FOXL1:0.067441165595;TBP:0.0635359655789;NFE2:0.058580710602;HOX{A6,A7,B6,B7}:0.0530027999219;HBP1_HMGB_SSRP1_UBTF:0.0469133309982;STAT5{A,B}:0.0467978972265;PAX2:-0.00383985554402;CDX1,2,4:-0.0136268375602;HNF1A:-0.0157924505856;NHLH1,2:-0.0181710572617;bHLH_family:-0.0228994140447;POU1F1:-0.0364777495088;HIC1:-0.0463017430628;OCT4_SOX2{dimer}:-0.0572260024069;IRF1,2:-0.0677894467304;SOX2:-0.0767032356777;NANOG{mouse}:-0.0814676968202;IRF7:-0.0823286687145;POU5F1:-0.109792406789;PAX5:-0.113190282936;ZFP161:-0.163761505599;LEF1_TCF7_TCF7L1,2:-0.166276207756;SP1:-0.170152817848;TFAP2{A,C}:-0.181745303544;NFIL3:-0.192181339992;DMAP1_NCOR{1,2}_SMARC:-0.204127294485;EGR1..3:-0.209944024559;ADNP_IRX_SIX_ZHX:-0.213270195414;MYFfamily:-0.218491703677;FOXP3:-0.233900579535;PATZ1:-0.251588145716;REST:-0.253785763014;FOXA2:-0.259487454988;JUN:-0.266969159196;ZNF423:-0.26890809019;PAX3,7:-0.269709965001;FOXD3:-0.274526400274;RREB1:-0.277294071173;FOXO1,3,4:-0.283587741513;SPZ1:-0.289169496578;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290954391382;CREB1:-0.296516529096;MYB:-0.302351056694;EP300:-0.309336888349;ZNF143:-0.311162951425;MEF2{A,B,C,D}:-0.315041477147;GATA6:-0.322406778465;CEBPA,B_DDIT3:-0.343492953445;NFKB1_REL_RELA:-0.3439920728;YY1:-0.361587338966;NRF1:-0.36774059751;LMO2:-0.368954880714;TGIF1:-0.380115835632;PRRX1,2:-0.388213289251;TOPORS:-0.390832842291;TFDP1:-0.397693866151;ELF1,2,4:-0.417644062303;HNF4A_NR2F1,2:-0.424769859975;SPI1:-0.435109579659;GFI1:-0.457958879648;SREBF1,2:-0.468569528814;ETS1,2:-0.499480086;ESRRA:-0.5204203313;NR1H4:-0.522587419414;MED-1{core}:-0.53435109478;BPTF:-0.537296031052;FOXN1:-0.540142665397;FOX{D1,D2}:-0.56158061746;SNAI1..3:-0.567764822681;SOX5:-0.603054563689;SPIB:-0.625668123886;MTF1:-0.695351307218;ATF2:-0.697087596738;FOXP1:-0.747661962941;E2F1..5:-0.750891233139;PBX1:-0.783815101172;ZEB1:-0.789834332091;SOX{8,9,10}:-0.798280344204;T:-0.807512774405;ATF5_CREB3:-0.816421034621;CUX2:-0.834631756858;NR5A1,2:-0.85163319283;NKX6-1,2:-0.852765076993;STAT1,3:-0.866726255525;IKZF2:-0.876462531694;MYOD1:-0.906808309394;RORA:-0.944916482158;HOXA9_MEIS1:-0.985031025155;ATF4:-0.985117542287;FOXQ1:-1.00895348204;NFY{A,B,C}:-1.0467429841;RFX2..5_RFXANK_RFXAP:-1.04963007831;NANOG:-1.07766692315;VSX1,2:-1.08837141416;FOX{F1,F2,J1}:-1.08967239617;PITX1..3:-1.09132605901;PDX1:-1.18584674742;POU2F1..3:-1.21707647698;BREu{core}:-1.22953654175;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.33876084964;NKX2-3_NKX2-5:-1.35154340314;RBPJ:-1.41967256066
|top_motifs=TAL1_TCF{3,4,12}:2.00565519604;HOX{A5,B5}:1.83875834371;HSF1,2:1.64559556243;EN1,2:1.55093963752;UFEwm:1.50798701702;POU3F1..4:1.46548781448;HMGA1,2:1.3685718148;XBP1:1.35714261215;PAX4:1.3541246862;ALX4:1.22460619518;GZF1:1.11258733382;ESR1:1.09855181263;PAX1,9:1.06846198172;EVI1:1.06817653403;SRF:1.05356107094;NFE2L1:1.03162975444;DBP:1.01991767651;AIRE:1.00869241818;NFATC1..3:0.986913235096;MYBL2:0.914453131977;TP53:0.889294096532;GLI1..3:0.845475382504;NKX3-2:0.842169622764;NKX3-1:0.834086412211;NFE2L2:0.822135782981;RXRA_VDR{dimer}:0.808583148319;ZIC1..3:0.808230666651;ATF6:0.805737835753;KLF4:0.76370444332;FOXM1:0.760337449707;ALX1:0.74192917903;TEAD1:0.740571507196;TBX4,5:0.730814982573;NR3C1:0.730462729214;GATA4:0.729126740906;HES1:0.724779330666;HOX{A4,D4}:0.720951197201;HIF1A:0.718519217479;NKX2-2,8:0.691003690864;CDC5L:0.665208851358;ZBTB16:0.648310405669;ARID5B:0.64722221565;ZNF238:0.641538765922;XCPE1{core}:0.618404884399;IKZF1:0.608154637617;TLX1..3_NFIC{dimer}:0.603373633083;ZNF384:0.553464653549;PRDM1:0.538258449729;POU6F1:0.497293053239;PAX6:0.496277016898;SOX17:0.488999476646;FOX{I1,J2}:0.488766572725;AR:0.482536415052;MAFB:0.479312881473;HLF:0.478459942127;ZBTB6:0.471539738138;EBF1:0.463331604301;TEF:0.45617988075;MTE{core}:0.446518867561;PPARG:0.437339148719;BACH2:0.414055415779;GTF2I:0.403731900871;RXR{A,B,G}:0.358755096934;GFI1B:0.358580216844;TFCP2:0.357519336141;NFIX:0.326590426187;GCM1,2:0.301165314026;FOS_FOS{B,L1}_JUN{B,D}:0.291229875626;TLX2:0.267303670322;CRX:0.265810119082;PAX8:0.257030565283;FOSL2:0.215976639613;HMX1:0.214094715824;TFAP4:0.198789370711;NKX2-1,4:0.184192836625;RUNX1..3:0.178049185639;STAT2,4,6:0.177904295051;ZNF148:0.163223394746;AHR_ARNT_ARNT2:0.162775181674;GTF2A1,2:0.158876763127;TFAP2B:0.140974437432;RFX1:0.131256169852;SMAD1..7,9:0.121961062612;MZF1:0.120667362846;NR6A1:0.115494185405;MAZ:0.0909118023183;HAND1,2:0.0838288915535;ELK1,4_GABP{A,B1}:0.0770358311008;LHX3,4:0.0721080283623;ONECUT1,2:0.0691381597542;FOXL1:0.067441165595;TBP:0.0635359655789;NFE2:0.058580710602;HOX{A6,A7,B6,B7}:0.0530027999219;HBP1_HMGB_SSRP1_UBTF:0.0469133309982;STAT5{A,B}:0.0467978972265;PAX2:-0.00383985554402;CDX1,2,4:-0.0136268375602;HNF1A:-0.0157924505856;NHLH1,2:-0.0181710572617;bHLH_family:-0.0228994140447;POU1F1:-0.0364777495088;HIC1:-0.0463017430628;OCT4_SOX2{dimer}:-0.0572260024069;IRF1,2:-0.0677894467304;SOX2:-0.0767032356777;NANOG{mouse}:-0.0814676968202;IRF7:-0.0823286687145;POU5F1:-0.109792406789;PAX5:-0.113190282936;ZFP161:-0.163761505599;LEF1_TCF7_TCF7L1,2:-0.166276207756;SP1:-0.170152817848;TFAP2{A,C}:-0.181745303544;NFIL3:-0.192181339992;DMAP1_NCOR{1,2}_SMARC:-0.204127294485;EGR1..3:-0.209944024559;ADNP_IRX_SIX_ZHX:-0.213270195414;MYFfamily:-0.218491703677;FOXP3:-0.233900579535;PATZ1:-0.251588145716;REST:-0.253785763014;FOXA2:-0.259487454988;JUN:-0.266969159196;ZNF423:-0.26890809019;PAX3,7:-0.269709965001;FOXD3:-0.274526400274;RREB1:-0.277294071173;FOXO1,3,4:-0.283587741513;SPZ1:-0.289169496578;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290954391382;CREB1:-0.296516529096;MYB:-0.302351056694;EP300:-0.309336888349;ZNF143:-0.311162951425;MEF2{A,B,C,D}:-0.315041477147;GATA6:-0.322406778465;CEBPA,B_DDIT3:-0.343492953445;NFKB1_REL_RELA:-0.3439920728;YY1:-0.361587338966;NRF1:-0.36774059751;LMO2:-0.368954880714;TGIF1:-0.380115835632;PRRX1,2:-0.388213289251;TOPORS:-0.390832842291;TFDP1:-0.397693866151;ELF1,2,4:-0.417644062303;HNF4A_NR2F1,2:-0.424769859975;SPI1:-0.435109579659;GFI1:-0.457958879648;SREBF1,2:-0.468569528814;ETS1,2:-0.499480086;ESRRA:-0.5204203313;NR1H4:-0.522587419414;MED-1{core}:-0.53435109478;BPTF:-0.537296031052;FOXN1:-0.540142665397;FOX{D1,D2}:-0.56158061746;SNAI1..3:-0.567764822681;SOX5:-0.603054563689;SPIB:-0.625668123886;MTF1:-0.695351307218;ATF2:-0.697087596738;FOXP1:-0.747661962941;E2F1..5:-0.750891233139;PBX1:-0.783815101172;ZEB1:-0.789834332091;SOX{8,9,10}:-0.798280344204;T:-0.807512774405;ATF5_CREB3:-0.816421034621;CUX2:-0.834631756858;NR5A1,2:-0.85163319283;NKX6-1,2:-0.852765076993;STAT1,3:-0.866726255525;IKZF2:-0.876462531694;MYOD1:-0.906808309394;RORA:-0.944916482158;HOXA9_MEIS1:-0.985031025155;ATF4:-0.985117542287;FOXQ1:-1.00895348204;NFY{A,B,C}:-1.0467429841;RFX2..5_RFXANK_RFXAP:-1.04963007831;NANOG:-1.07766692315;VSX1,2:-1.08837141416;FOX{F1,F2,J1}:-1.08967239617;PITX1..3:-1.09132605901;PDX1:-1.18584674742;POU2F1..3:-1.21707647698;BREu{core}:-1.22953654175;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.33876084964;NKX2-3_NKX2-5:-1.35154340314;RBPJ:-1.41967256066
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11758-123H3;search_select_hide=table117:FF:11758-123H3
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer metastasis, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12374
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005281
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12374 CAGE DRX008559 DRR009431
Accession ID Hg19

Library idBAMCTSS
CNhs12374 DRZ000856 DRZ002241
Accession ID Hg38

Library idBAMCTSS
CNhs12374 DRZ012206 DRZ013591
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0579
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.151
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.367
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.112
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.562
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0574
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.184
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.395
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00244
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.185
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.185
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0278
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.293
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.255
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.102
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.457
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.594
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.594
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.013
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.649
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0607
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.94
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12374

Jaspar motifP-value
MA0002.20.613
MA0003.10.675
MA0004.10.0856
MA0006.10.162
MA0007.10.647
MA0009.10.362
MA0014.10.946
MA0017.10.62
MA0018.22.80736e-6
MA0019.10.477
MA0024.11.47861e-6
MA0025.10.00452
MA0027.10.369
MA0028.10.304
MA0029.10.435
MA0030.10.00862
MA0031.10.0421
MA0035.20.0741
MA0038.10.00466
MA0039.20.0826
MA0040.10.593
MA0041.10.846
MA0042.10.754
MA0043.14.66775e-6
MA0046.10.0863
MA0047.20.528
MA0048.10.107
MA0050.10.0268
MA0051.10.28
MA0052.10.0261
MA0055.10.366
MA0057.10.0923
MA0058.10.0346
MA0059.10.842
MA0060.11.19159e-11
MA0061.10.793
MA0062.22.80341e-4
MA0065.20.168
MA0066.10.307
MA0067.10.0104
MA0068.10.0653
MA0069.10.346
MA0070.10.46
MA0071.10.719
MA0072.10.567
MA0073.10.831
MA0074.10.403
MA0076.10.134
MA0077.10.229
MA0078.10.706
MA0079.20.347
MA0080.22.74906e-7
MA0081.10.0116
MA0083.10.00182
MA0084.10.978
MA0087.10.681
MA0088.10.86
MA0090.10.00462
MA0091.10.226
MA0092.10.217
MA0093.10.14
MA0099.26.69172e-5
MA0100.10.478
MA0101.10.19
MA0102.20.0125
MA0103.10.0568
MA0104.20.0318
MA0105.10.204
MA0106.10.023
MA0107.10.431
MA0108.20.468
MA0111.10.382
MA0112.20.0121
MA0113.10.466
MA0114.10.3
MA0115.10.118
MA0116.10.303
MA0117.10.931
MA0119.10.029
MA0122.10.317
MA0124.10.106
MA0125.10.0197
MA0131.10.305
MA0135.10.0894
MA0136.11.81859e-7
MA0137.20.594
MA0138.20.989
MA0139.10.283
MA0140.10.4
MA0141.10.65
MA0142.10.207
MA0143.10.945
MA0144.10.68
MA0145.10.48
MA0146.10.555
MA0147.10.184
MA0148.10.849
MA0149.10.4
MA0150.10.329
MA0152.10.0967
MA0153.10.624
MA0154.10.338
MA0155.10.273
MA0156.18.40111e-4
MA0157.10.256
MA0159.10.961
MA0160.10.149
MA0162.10.0821
MA0163.10.0237
MA0164.10.666
MA0258.10.412
MA0259.10.55



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12374

Novel motifP-value
10.421
100.712
1000.527
1010.761
1020.494
1030.206
1040.972
1050.281
1060.0697
1070.0294
1080.288
1090.384
110.238
1100.103
1110.8
1120.33
1130.0211
1140.0865
1150.134
1160.11
1170.509
1180.852
1190.472
120.285
1200.15
1210.749
1220.0936
1230.00198
1240.674
1250.655
1260.811
1270.296
1280.0737
1290.852
130.959
1300.386
1310.135
1320.398
1330.45
1340.343
1350.947
1360.623
1370.607
1380.763
1390.278
140.203
1400.657
1410.263
1420.612
1430.0874
1440.541
1450.485
1460.814
1470.0605
1480.534
1490.174
150.486
1500.134
1510.767
1520.0547
1530.367
1540.977
1550.0279
1560.511
1570.572
1580.0407
1590.159
160.0211
1600.494
1610.49
1620.572
1630.231
1640.0823
1650.88
1660.0646
1670.864
1680.683
1690.121
170.168
180.092
190.0629
20.649
200.586
210.469
220.357
230.0208
240.952
250.256
260.455
270.467
280.404
290.0935
30.299
300.629
310.561
325.50552e-10
330.76
340.85
350.441
360.0496
370.026
380.614
390.21
40.792
400.339
410.88
420.872
430.203
440.197
450.907
460.182
470.754
480.542
490.994
50.555
500.831
510.974
520.927
530.0596
540.811
550.112
560.928
570.914
580.519
590.178
60.536
600.701
610.689
620.576
630.424
640.73
650.439
660.29
670.293
680.995
690.47
70.226
700.171
710.383
720.906
730.0215
740.0991
750.362
760.593
770.0673
780.688
790.00473
80.0627
800.935
810.543
820.419
830.877
840.67
850.0947
860.948
870.282
880.883
890.0271
90.469
900.433
910.514
920.0386
930.995
940.385
950.225
960.803
970.204
980.0591
990.00312



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12374


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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