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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004808
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004808
|accession_numbers=CAGE;DRX008389;DRR009261;DRZ000686;DRZ002071;DRZ012036;DRZ013421
|accession_numbers_RNASeq=sRNA-Seq;DRX037238;DRR041604;DRZ007246
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000035,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000062,CL:0000375,CL:0000335
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.64!42.43!DLX5;;chr11:46299199..46299233,+!p1@CREB3L1!1.57!180.27!CREB3L1;;chrX:591524..591527,+!p1@SHOX!1.57!36.41!SHOX;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.37!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.52!36.41!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.30!ZBED1;;chr14:61116183..61116208,-!p1@SIX1!1.45!100.82!SIX1;;chr15:42749722..42749739,-!p2@ZFP106!1.45!48.15!ZFP106;;chr8:25902876..25902936,-!p1@EBF2!1.43!26.18!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.01!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.38!22.87!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.07!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.78!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.27!17.45!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.65!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.57!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!19.86!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.21!15.35!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!61.99!FOXD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.15!13.24!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.75!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!1.13!12.64!CREB3L1;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.04!HOXA7;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.19!FOXC2;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.44!DLX5;;chr1:119530636..119530653,-!p2@TBX15!1.07!10.83!TBX15;;chr7:27205136..27205164,-!p1@HOXA9!1.06!10.53!HOXA9;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.75!IRX5;;chr7:27213893..27213954,-!p1@HOXA10!1.04!9.93!HOXA10;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.53!PRRX1;;chr2:176973498..176973524,+!p1@HOXD10!1.00!9.03!HOXD10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.23!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.73!HOXA11;;chr15:67391010..67391046,+!p13@SMAD3!0.99!8.73!SMAD3;;chr1:8938709..8938720,-!p3@ENO1!0.98!425.84!ENO1;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.43!HOXD10;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.84!FOXD1;;chr10:28034739..28034756,-!p1@MKX!0.96!8.13!MKX;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.54!FOXC1;;chr1:119530706..119530736,-!p3@TBX15!0.95!7.82!TBX15;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.52!HOXA3;;chr10:64576105..64576133,-!p1@EGR2!0.92!15.35!EGR2;;chr7:44143978..44143989,+!p2@AEBP1!0.90!13.24!AEBP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.92!FOXC2;;chr20:39946361..39946379,-!p2@ZHX3!0.89!21.07!ZHX3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.89!7.22!GLIS1;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.62!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr2:176981526..176981543,+!p3@HOXD10!0.88!6.62!HOXD10;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.43!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.40!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.86!24.98!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.95!TWIST1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.32!SHOX2;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.39!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.72!HIF3A;;chr1:170632723..170632739,+!p8@PRRX1!0.83!5.72!PRRX1;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.52!EBF1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.42!HOXD8;;chr16:54320101..54320125,-!p4@IRX3!0.80!7.82!IRX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.47!ZFHX4;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.74!SMARCD3;;chr19:44037546..44037594,+!p1@ZNF575!0.79!11.14!ZNF575;;chr4:174451350..174451363,-!p3@HAND2!0.79!5.12!HAND2;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.12!BARX1;;chr16:54319010..54319041,-!p8@IRX3!0.79!5.12!IRX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.12!HOXC5;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.72!CREB3L1;;chr19:13106214..13106382,+!p1@NFIX!0.76!121.28!NFIX;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.82!HOXA11;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.82!RUNX1T1;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.09!TSC22D1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.73!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.05!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.74!6.02!IRX3;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.51!ZNF668;;chr2:176981546..176981557,+!p5@HOXD10!0.74!4.51!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.51!ZNF385D;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.51!HOPX;;chr6:108977520..108977534,+!p7@FOXO3!0.74!4.51!FOXO3;;chr7:27195867..27195893,-!p3@HOXA7!0.74!4.51!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.74!4.51!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.72!107.44!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.74!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.97!HMGA2;;chr16:54320158..54320200,-!p5@IRX3!0.72!6.32!IRX3;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!125.80!TSC22D3;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.32!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.71!4.82!SIX1;;chr7:150974206..150974255,-!p1@SMARCD3!0.70!28.59!SMARCD3;;chrX:1069602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|expression_enrichment_score=chr7:96654133..96654150,-!p1@DLX5!1.64!42.43!DLX5;;chr11:46299199..46299233,+!p1@CREB3L1!1.57!180.27!CREB3L1;;chrX:591524..591527,+!p1@SHOX!1.57!36.41!SHOX;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.37!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.52!36.41!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.30!ZBED1;;chr14:61116183..61116208,-!p1@SIX1!1.45!100.82!SIX1;;chr15:42749722..42749739,-!p2@ZFP106!1.45!48.15!ZFP106;;chr8:25902876..25902936,-!p1@EBF2!1.43!26.18!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.01!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.38!22.87!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.34!21.07!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.78!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.27!17.45!SIX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.65!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.57!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!19.86!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.21!15.35!PRRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!61.99!FOXD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.15!13.24!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.75!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!1.13!12.64!CREB3L1;;chr7:27196217..27196246,-!p2@HOXA7!1.12!12.04!HOXA7;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.19!FOXC2;;chr7:96654026..96654061,-!p2@DLX5!1.09!11.44!DLX5;;chr1:119530636..119530653,-!p2@TBX15!1.07!10.83!TBX15;;chr7:27205136..27205164,-!p1@HOXA9!1.06!10.53!HOXA9;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.75!IRX5;;chr7:27213893..27213954,-!p1@HOXA10!1.04!9.93!HOXA10;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.53!PRRX1;;chr2:176973498..176973524,+!p1@HOXD10!1.00!9.03!HOXD10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.23!RUNX2;;chr7:27224842..27224872,-!p1@HOXA11!0.99!8.73!HOXA11;;chr15:67391010..67391046,+!p13@SMAD3!0.99!8.73!SMAD3;;chr1:8938709..8938720,-!p3@ENO1!0.98!425.84!ENO1;;chr2:176981499..176981522,+!p2@HOXD10!0.97!8.43!HOXD10;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.84!FOXD1;;chr10:28034739..28034756,-!p1@MKX!0.96!8.13!MKX;;chr6:1610293..1610310,+!p1@FOXC1!0.95!13.54!FOXC1;;chr1:119530706..119530736,-!p3@TBX15!0.95!7.82!TBX15;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.52!HOXA3;;chr10:64576105..64576133,-!p1@EGR2!0.92!15.35!EGR2;;chr7:44143978..44143989,+!p2@AEBP1!0.90!13.24!AEBP1;;chr16:86600870..86600921,+!p2@FOXC2!0.90!6.92!FOXC2;;chr20:39946361..39946379,-!p2@ZHX3!0.89!21.07!ZHX3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.89!7.22!GLIS1;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.62!HOXA7;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr2:176981526..176981543,+!p3@HOXD10!0.88!6.62!HOXD10;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.43!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.40!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.86!24.98!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.95!TWIST1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.32!SHOX2;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.39!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.72!HIF3A;;chr1:170632723..170632739,+!p8@PRRX1!0.83!5.72!PRRX1;;chr1:158969752..158969780,+!p6@IFI16!0.81!9.93!IFI16;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.52!EBF1;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.42!HOXD8;;chr16:54320101..54320125,-!p4@IRX3!0.80!7.82!IRX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.47!ZFHX4;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.74!SMARCD3;;chr19:44037546..44037594,+!p1@ZNF575!0.79!11.14!ZNF575;;chr4:174451350..174451363,-!p3@HAND2!0.79!5.12!HAND2;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.12!BARX1;;chr16:54319010..54319041,-!p8@IRX3!0.79!5.12!IRX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.12!HOXC5;;chr11:46299186..46299195,+!p3@CREB3L1!0.78!5.72!CREB3L1;;chr19:13106214..13106382,+!p1@NFIX!0.76!121.28!NFIX;;chr7:27224795..27224840,-!p2@HOXA11!0.76!4.82!HOXA11;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.82!RUNX1T1;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.09!TSC22D1;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.73!NFIX;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.05!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.74!6.02!IRX3;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.51!ZNF668;;chr2:176981546..176981557,+!p5@HOXD10!0.74!4.51!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.74!4.51!ZNF385D;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.51!HOPX;;chr6:108977520..108977534,+!p7@FOXO3!0.74!4.51!FOXO3;;chr7:27195867..27195893,-!p3@HOXA7!0.74!4.51!HOXA7;;chr8:93074803..93074845,-!p1@RUNX1T1!0.74!4.51!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.72!107.44!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.74!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.97!HMGA2;;chr16:54320158..54320200,-!p5@IRX3!0.72!6.32!IRX3;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!125.80!TSC22D3;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.32!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.71!4.82!SIX1;;chr7:150974206..150974255,-!p1@SMARCD3!0.70!28.59!SMARCD3;;chrX:1069602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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000062
|ffid_belonging_in_development=CL:0000134,CL:0000335
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%2520-%2520differentiated%252c%2520donor1.CNhs11311.11276-116H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11276-116H7
|id=FF:11276-116H7
|is_a=EFO:0002091;;FF:0000127;;FF:0000128
|is_a=EFO:0002091;;FF:0000127;;FF:0000128
|is_obsolete=
|is_obsolete=
|library_id=CNhs11311
|library_id_phase_based=2:CNhs11311
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11276
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.ATGTCA.11276
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11276
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.ATGTCA.11276
|name=Osteoblast - differentiated, donor1
|name=Osteoblast - differentiated, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11311,LSID767,release008,COMPLETED
|profile_hcage=CNhs11311,LSID767,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA406D-R10f
|rna_catalog_number=CA406D-R10f
Line 58: Line 82:
|rna_tube_id=116H7
|rna_tube_id=116H7
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.ATGTCA
|sample_age=embryo 22week
|sample_age=embryo 22week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 80: Line 106:
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|top_motifs=TAL1_TCF{3,4,12}:1.79573057455;HES1:1.67144441149;ATF6:1.49829935806;NFATC1..3:1.42400256256;RXRA_VDR{dimer}:1.33463641501;MAFB:1.31035014329;ZNF238:1.25790846526;ZNF423:1.24263888073;HOX{A5,B5}:1.23229033243;HIF1A:1.22424207249;GZF1:1.21026701444;GLI1..3:1.17242993482;FOXL1:1.09644477638;GTF2A1,2:1.07616203431;ZNF148:1.03914509208;NR3C1:1.0085505276;NANOG{mouse}:1.00491124092;MYBL2:0.992286554003;ESR1:0.984857418737;HAND1,2:0.9822028549;TLX1..3_NFIC{dimer}:0.969732376377;IKZF1:0.961564346026;TFAP4:0.951100599804;TEAD1:0.947298940612;GCM1,2:0.905060188892;TFAP2{A,C}:0.901150902996;EBF1:0.876245629542;NFE2L1:0.870436603172;SRF:0.869159002994;STAT5{A,B}:0.85963984986;GTF2I:0.8475425191;EP300:0.839589799938;MTE{core}:0.819232542602;NKX2-3_NKX2-5:0.786895243394;ZBTB6:0.781512810857;HOX{A6,A7,B6,B7}:0.772617407229;TP53:0.765919469926;GFI1B:0.758114670528;HIC1:0.747795572354;HMGA1,2:0.742441810448;NFIX:0.725526177223;EVI1:0.722524614912;DBP:0.721592785485;SMAD1..7,9:0.717084060535;MZF1:0.686768323787;PRDM1:0.683108681826;PATZ1:0.681150577175;PAX5:0.673883561891;NKX6-1,2:0.63865287564;XBP1:0.627798716639;TFAP2B:0.626084948997;MAZ:0.625043647794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.622264409939;bHLH_family:0.609059557813;SPZ1:0.587166465711;HMX1:0.557612555153;KLF4:0.543054411617;ADNP_IRX_SIX_ZHX:0.533999165492;MYFfamily:0.500302866362;NR5A1,2:0.484065639145;PAX1,9:0.479514761811;NR6A1:0.468611803059;HLF:0.459262895239;TBX4,5:0.458895336502;ZIC1..3:0.455792817707;LHX3,4:0.450723327812;YY1:0.444839946478;TFCP2:0.432144146529;FOX{I1,J2}:0.431786287253;FOX{F1,F2,J1}:0.430392908643;RREB1:0.42925062443;SREBF1,2:0.418191449389;NHLH1,2:0.380967963235;FOXO1,3,4:0.374839941218;MTF1:0.371941950563;PRRX1,2:0.358963920894;EGR1..3:0.347281733781;NKX3-2:0.338912294395;NFE2L2:0.337999371906;PAX8:0.323788855643;SOX17:0.323351276018;MED-1{core}:0.307705864215;EN1,2:0.287893806726;FOXA2:0.285562261064;UFEwm:0.266623005153;NR1H4:0.255283686561;TBP:0.240425370473;NKX3-1:0.223904798412;POU3F1..4:0.198477057307;NKX2-2,8:0.190501450001;LEF1_TCF7_TCF7L1,2:0.185019694656;ALX4:0.174094327225;DMAP1_NCOR{1,2}_SMARC:0.171804951527;REST:0.167240896292;RFX1:0.1556984057;STAT2,4,6:0.147546739753;MEF2{A,B,C,D}:0.137632995638;RXR{A,B,G}:0.125230582994;CEBPA,B_DDIT3:0.111251113972;HNF1A:0.0936849625056;AIRE:0.0914363803382;CRX:0.0899292627157;STAT1,3:0.0888233133067;SP1:0.0619250513685;BACH2:0.0437048747349;RUNX1..3:0.0422047687587;NFIL3:0.028750961115;GFI1:0.00529098461604;FOSL2:0.000369599021083;ONECUT1,2:0.000318809177304;PDX1:-0.000736334646654;GATA4:-0.0134585851528;XCPE1{core}:-0.0374785238677;FOS_FOS{B,L1}_JUN{B,D}:-0.0407134586512;ZNF143:-0.0481005255871;HBP1_HMGB_SSRP1_UBTF:-0.0514208607673;FOX{D1,D2}:-0.0821881052298;TGIF1:-0.0865439864441;ZFP161:-0.0980256264187;AHR_ARNT_ARNT2:-0.131211158337;POU6F1:-0.134964436793;NRF1:-0.148919627818;HSF1,2:-0.150456161729;ELK1,4_GABP{A,B1}:-0.151898860632;ARID5B:-0.183018108173;JUN:-0.189175041613;ATF2:-0.233722475133;AR:-0.234956782207;ESRRA:-0.250908623643;NFE2:-0.253758233649;TFDP1:-0.261870376672;NANOG:-0.267155113051;PAX4:-0.271726617637;HNF4A_NR2F1,2:-0.273056057684;ZNF384:-0.290332906151;NFKB1_REL_RELA:-0.31196539595;ATF4:-0.322831101988;CDC5L:-0.340871784083;HOX{A4,D4}:-0.361733474203;PBX1:-0.36730364719;IRF1,2:-0.372330151858;BPTF:-0.411425312228;BREu{core}:-0.443170497896;ETS1,2:-0.448298476949;POU5F1:-0.459102274278;MYB:-0.478701281582;PAX2:-0.48418681225;PPARG:-0.488108552313;TLX2:-0.499419744581;FOXM1:-0.516903345463;RORA:-0.525701812203;CUX2:-0.527764456561;SOX2:-0.528226489442;PAX6:-0.543645571846;GATA6:-0.544560370606;RFX2..5_RFXANK_RFXAP:-0.551357183282;MYOD1:-0.566955214303;PAX3,7:-0.584466994064;LMO2:-0.586500291178;SOX5:-0.601952391992;ELF1,2,4:-0.609775893919;OCT4_SOX2{dimer}:-0.615344717306;SPIB:-0.627986345665;SNAI1..3:-0.629356168336;TOPORS:-0.642050638316;TEF:-0.645503353859;SPI1:-0.678468082505;NKX2-1,4:-0.733903698743;ATF5_CREB3:-0.759556811341;ZEB1:-0.762570857103;FOXP3:-0.76405611304;T:-0.772912705369;VSX1,2:-0.78764463353;IRF7:-0.834281042992;SOX{8,9,10}:-0.834445204175;CREB1:-0.83948021224;FOXN1:-0.85242674398;NFY{A,B,C}:-0.87068877389;RBPJ:-0.873899346361;PITX1..3:-0.922284450623;POU2F1..3:-0.965768917171;ALX1:-0.971029557989;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0049632425;E2F1..5:-1.02634881625;CDX1,2,4:-1.18954640937;IKZF2:-1.26795979371;FOXP1:-1.30299167102;FOXD3:-1.32999670234;POU1F1:-1.34761033884;FOXQ1:-1.38228363451;ZBTB16:-1.45796951551;HOXA9_MEIS1:-1.47515609645
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11276-116H7;search_select_hide=table117:FF:11276-116H7
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Osteoblast - differentiated, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11311
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stage22 weeks old fetus
sexfemale
ageembryo 22week
cell typeosteocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1419
catalog numberCA406D-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004808
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11311 CAGE DRX008389 DRR009261
Accession ID Hg19

Library idBAMCTSS
CNhs11311 DRZ000686 DRZ002071
Accession ID Hg38

Library idBAMCTSS
CNhs11311 DRZ012036 DRZ013421
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004808
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.ATGTCA sRNA-Seq DRX037238 DRR041604
Accession ID Hg19

Library idBAMCTSS
SRhi10014.ATGTCA DRZ007246


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.343
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00475
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.209
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.319
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.279
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.272
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0716
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.114
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.401
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.114
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00585
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.538
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.114
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.664
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.343
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.114
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.279
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.635
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.448
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11311

Jaspar motifP-value
MA0002.20.601
MA0003.10.141
MA0004.10.984
MA0006.10.345
MA0007.10.995
MA0009.10.0288
MA0014.10.177
MA0017.10.482
MA0018.22.91406e-6
MA0019.10.589
MA0024.11.5154e-5
MA0025.10.162
MA0027.10.734
MA0028.10.00389
MA0029.10.553
MA0030.10.444
MA0031.10.801
MA0035.20.257
MA0038.10.106
MA0039.20.0613
MA0040.10.186
MA0041.10.291
MA0042.10.313
MA0043.10.0157
MA0046.10.0394
MA0047.20.535
MA0048.10.422
MA0050.12.00231e-6
MA0051.10.13
MA0052.10.634
MA0055.10.547
MA0057.10.369
MA0058.10.913
MA0059.10.923
MA0060.11.79571e-4
MA0061.10.264
MA0062.22.94757e-7
MA0065.20.197
MA0066.10.931
MA0067.10.0188
MA0068.10.446
MA0069.10.464
MA0070.10.625
MA0071.10.895
MA0072.10.504
MA0073.10.984
MA0074.10.347
MA0076.10.00651
MA0077.10.217
MA0078.10.939
MA0079.20.508
MA0080.23.47402e-7
MA0081.10.0598
MA0083.11.60005e-4
MA0084.10.51
MA0087.10.593
MA0088.10.403
MA0090.11.6446e-4
MA0091.10.0152
MA0092.10.148
MA0093.10.987
MA0099.20.865
MA0100.10.277
MA0101.10.0549
MA0102.20.14
MA0103.10.0151
MA0104.20.241
MA0105.10.0941
MA0106.10.181
MA0107.10.265
MA0108.28.55082e-4
MA0111.10.16
MA0112.20.542
MA0113.10.0278
MA0114.10.302
MA0115.10.0161
MA0116.10.133
MA0117.10.259
MA0119.10.745
MA0122.10.813
MA0124.10.74
MA0125.10.282
MA0131.10.287
MA0135.10.605
MA0136.13.81886e-8
MA0137.20.433
MA0138.20.71
MA0139.10.955
MA0140.10.669
MA0141.10.983
MA0142.10.459
MA0143.10.676
MA0144.10.487
MA0145.10.512
MA0146.10.593
MA0147.10.187
MA0148.10.409
MA0149.10.741
MA0150.10.0621
MA0152.10.198
MA0153.10.0105
MA0154.10.316
MA0155.10.125
MA0156.11.70807e-6
MA0157.10.874
MA0159.10.328
MA0160.10.379
MA0162.10.245
MA0163.10.859
MA0164.10.562
MA0258.10.91
MA0259.10.651



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11311

Novel motifP-value
10.348
100.124
1000.384
1010.724
1020.145
1030.608
1040.548
1050.952
1060.756
1070.128
1080.925
1090.618
110.909
1100.99
1110.268
1120.459
1130.0372
1140.887
1150.731
1160.466
1170.101
1180.292
1190.275
120.442
1200.944
1210.824
1220.589
1231.17819e-4
1240.795
1250.823
1260.415
1270.73
1280.407
1290.9
130.072
1300.158
1310.113
1320.285
1330.47
1340.2
1350.34
1360.235
1370.111
1380.743
1390.503
140.417
1400.145
1410.014
1420.982
1430.525
1440.318
1450.659
1460.222
1470.356
1480.0902
1490.0927
150.452
1500.816
1510.762
1520.0329
1530.58
1540.747
1550.0158
1560.809
1570.768
1580.00287
1590.248
160.202
1600.264
1610.603
1620.236
1630.523
1640.681
1650.847
1660.0555
1670.312
1680.631
1690.14
170.665
180.239
190.024
20.236
200.107
210.61
220.304
230.532
240.915
250.216
260.666
270.714
280.083
290.837
30.985
300.0985
310.608
321.92039e-11
330.585
340.594
350.334
360.169
370.759
380.581
390.304
40.449
400.312
410.43
420.471
430.969
440.632
450.384
460.926
470.3
480.663
490.621
50.81
500.773
510.9
520.36
530.183
540.866
550.277
560.463
570.973
580.311
590.0667
60.313
600.562
610.687
620.345
630.723
640.633
650.839
660.648
670.566
680.229
690.529
70.253
700.354
710.385
720.647
730.0689
740.907
750.387
760.133
770.32
780.00342
790.0316
80.556
800.968
810.95
820.717
830.785
840.131
850.751
860.885
870.474
880.416
890.131
90.229
900.488
910.884
920.152
930.658
940.878
950.0819
960.434
970.425
980.941
990.00239



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11311


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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