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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|DRA_sample_Accession=CAGE@SAMD00004861
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000764,CL:0000839,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000765,CL:0002031,CL:0000037,CL:0000050,CL:0000566,CL:0000049,CL:0000038,CL:0000837,CL:0000558,CL:0000547,CL:0000549,CL:0000550,CL:0000552
|accession_numbers=CAGE;DRX008174;DRR009046;DRZ000471;DRZ001856;DRZ011821;DRZ013206
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000764,CL:0000548,CL:0000763,CL:0002371,CL:0000255,CL:0000558
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011169
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:12998003..12998021,-!p1@KLF1!2.74!549.28!KLF1;;chrX:48644984..48645005,+!p1@GATA1!2.60!401.30!GATA1;;chr9:135854091..135854159,+!p1@GFI1B!2.44!275.55!GFI1B;;chr12:54689532..54689551,-!p4@NFE2!2.31!201.83!NFE2;;chr12:54694653..54694672,-!p2@NFE2!2.19!154.77!NFE2;;chr9:20382446..20382493,-!p4@MLLT3!2.12!132.29!MLLT3;;chr10:51572339..51572376,+!p4@NCOA4!2.10!270.59!NCOA4;;chr10:51572408..51572454,+!p3@NCOA4!2.07!643.39!NCOA4;;chr1:47695003..47695042,-!p2@TAL1!2.03!106.40!TAL1;;chr12:54694758..54694805,-!p1@NFE2!2.01!120.78!NFE2;;chr12:54694807..54694832,-!p3@NFE2!2.01!100.39!NFE2;;chr11:16403882..16403908,-!p9@SOX6!1.99!95.69!SOX6;;chr2:239148671..239148686,-!p1@HES6!1.93!292.55!HES6;;chr19:13213511..13213545,-!p2@LYL1!1.91!87.06!LYL1;;chr1:23857698..23857733,-!p1@E2F2!1.90!141.18!E2F2;;chr12:54689552..54689574,-!p6@NFE2!1.78!59.87!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.68!47.32!GFI1B;;chrY:21906594..21906622,-!p1@KDM5D!1.67!45.49!KDM5D;;chrX:48644976..48644983,+!p2@GATA1!1.66!44.71!GATA1;;chr8:37963466..37963506,+!p3@ASH2L!1.62!50.72!ASH2L;;chr2:74229812..74229867,+!p1@TET3!1.60!93.86!TET3;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.69!PLEK;;chr11:16403910..16403933,-!p12@SOX6!1.57!35.82!SOX6;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.51!TAL1;;chr3:141747459..141747475,-!p1@TFDP2!1.50!245.75!TFDP2;;chr3:128212033..128212051,-!p1@GATA2!1.48!29.54!GATA2;;chr1:23857325..23857416,-!p2@E2F2!1.47!33.46!E2F2;;chr3:141747950..141748004,-!p7@TFDP2!1.41!24.84!TFDP2;;chr10:111967345..111967422,+!p1@MXI1!1.40!380.39!MXI1;;chr17:42299455..42299485,-!p12@UBTF!1.36!30.07!UBTF;;chr9:135854058..135854072,+!p3@GFI1B!1.36!21.96!GFI1B;;chrX:131623044..131623089,-!p1@MBNL3!1.31!78.69!MBNL3;;chr19:13213555..13213568,-!p5@LYL1!1.30!19.08!LYL1;;chr7:28220506..28220552,-!p3@JAZF1!1.30!18.82!JAZF1;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.51!MXD3;;chr7:50343634..50343717,+!p2@IKZF1!1.26!16.99!IKZF1;;chr12:54694686..54694697,-!p8@NFE2!1.24!16.21!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.23!19.35!MYB;;chr11:19262461..19262476,-!p5@E2F8!1.23!15.95!E2F8;;chrY:2803415..2803468,+!p1@ZFY!1.19!14.64!ZFY;;chrY:21906761..21906810,-!p2@KDM5D!1.18!14.12!KDM5D;;chr7:28220354..28220441,-!p1@JAZF1!1.17!213.07!JAZF1;;chr20:42295713..42295738,+!p2@MYBL2!1.17!80.26!MYBL2;;chr11:19263160..19263176,-!p1@E2F8!1.17!16.47!E2F8;;chr19:4067039..4067064,-!p3@ZBTB7A!1.16!39.22!ZBTB7A;;chr3:141748010..141748030,-!p8@TFDP2!1.16!13.59!TFDP2;;chr2:60780607..60780624,-!p2@BCL11A!1.15!40.26!BCL11A;;chr6:56954867..56954882,+!p2@ZNF451!1.15!38.17!ZNF451;;chr4:38665810..38665827,+!p1@KLF3!1.13!179.87!KLF3;;chr20:42295745..42295765,+!p1@MYBL2!1.12!198.95!MYBL2;;chrX:70316005..70316034,+!p2@FOXO4!1.12!21.96!FOXO4;;chr11:16627614..16627651,-!p4@SOX6!1.12!12.29!SOX6;;chr1:47696918..47696935,-!p6@TAL1!1.12!12.29!TAL1;;chr11:19262486..19262512,-!p4@E2F8!1.11!14.64!E2F8;;chr7:64363638..64363667,+!p1@ZNF273!1.10!58.82!ZNF273;;chr1:47697965..47697991,-!p7@TAL1!1.10!11.50!TAL1;;chr1:61548225..61548299,+!p1@NFIA!1.09!146.40!NFIA;;chr4:87928307..87928321,+!p8@AFF1!1.09!25.62!AFF1;;chr10:51565239..51565263,+!p2@NCOA4!1.08!255.68!NCOA4;;chr4:87928328..87928351,+!p6@AFF1!1.08!29.54!AFF1;;chr3:141747441..141747452,-!p4@TFDP2!1.08!15.42!TFDP2;;chr7:50343895..50343936,+!p5@IKZF1!1.08!10.98!IKZF1;;chrX:48645010..48645015,+!p3@GATA1!1.07!10.72!GATA1;;chr1:47697859..47697869,-!p14@TAL1!1.07!10.72!TAL1;;chrX:70315688..70315709,+!p1@FOXO4!1.06!24.57!FOXO4;;chrX:131622958..131622978,-!p3@MBNL3!1.04!12.55!MBNL3;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.67!TAL1;;chr7:50344144..50344157,+!p6@IKZF1!1.01!9.15!IKZF1;;chr4:38665769..38665801,+!p2@KLF3!1.00!83.66!KLF3;;chr1:47694935..47694944,-!p15@TAL1!1.00!8.89!TAL1;;chr13:114238997..114239077,+!p1@TFDP1!0.99!451.24!TFDP1;;chr16:67226019..67226127,+!p1@E2F4!0.99!117.12!E2F4;;chr14:55493763..55493824,-!p1@WDHD1!0.97!64.31!WDHD1;;chr2:60780753..60780800,-!p1@BCL11A!0.97!41.83!BCL11A;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.39!NFIA;;chrX:131623026..131623039,-!p5@MBNL3!0.96!8.10!MBNL3;;chr16:88519669..88519726,+!p1@ZFPM1!0.95!74.25!ZFPM1;;chr6:134274322..134274342,+!p3@TBPL1!0.95!25.62!TBPL1;;chr6:135502408..135502459,+!p2@MYB!0.95!9.15!MYB;;chr4:87928353..87928401,+!p4@AFF1!0.94!35.82!AFF1;;chr11:19263192..19263222,-!p2@E2F8!0.94!9.41!E2F8;;chr4:87928413..87928433,+!p3@AFF1!0.92!47.58!AFF1;;chr17:79881332..79881348,-!p3@MAFG!0.92!10.98!MAFG;;chr19:13213662..13213686,-!p1@LYL1!0.92!10.98!LYL1;;chr7:28220198..28220269,-!p2@JAZF1!0.91!67.19!JAZF1;;chr12:54691711..54691725,-!p7@NFE2!0.91!7.06!NFE2;;chr6:108882109..108882173,+!p2@FOXO3!0.90!39.22!FOXO3;;chr17:42298615..42298692,-!p2@UBTF!0.90!37.39!UBTF;;chr19:52074502..52074587,+!p1@ZNF175!0.90!26.14!ZNF175;;chr19:12203100..12203132,+!p1@ZNF788!0.89!14.12!ZNF788;;chr10:111985713..111985774,+!p2@MXI1!0.88!66.14!MXI1;;chr7:148581360..148581425,-!p1@EZH2!0.88!33.99!EZH2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.88!31.37!TAL1;;chr11:9482521..9482533,+!p2@ZNF14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|expression_enrichment_score=chr19:12998003..12998021,-!p1@KLF1!2.74!549.28!KLF1;;chrX:48644984..48645005,+!p1@GATA1!2.60!401.30!GATA1;;chr9:135854091..135854159,+!p1@GFI1B!2.44!275.55!GFI1B;;chr12:54689532..54689551,-!p4@NFE2!2.31!201.83!NFE2;;chr12:54694653..54694672,-!p2@NFE2!2.19!154.77!NFE2;;chr9:20382446..20382493,-!p4@MLLT3!2.12!132.29!MLLT3;;chr10:51572339..51572376,+!p4@NCOA4!2.10!270.59!NCOA4;;chr10:51572408..51572454,+!p3@NCOA4!2.07!643.39!NCOA4;;chr1:47695003..47695042,-!p2@TAL1!2.03!106.40!TAL1;;chr12:54694758..54694805,-!p1@NFE2!2.01!120.78!NFE2;;chr12:54694807..54694832,-!p3@NFE2!2.01!100.39!NFE2;;chr11:16403882..16403908,-!p9@SOX6!1.99!95.69!SOX6;;chr2:239148671..239148686,-!p1@HES6!1.93!292.55!HES6;;chr19:13213511..13213545,-!p2@LYL1!1.91!87.06!LYL1;;chr1:23857698..23857733,-!p1@E2F2!1.90!141.18!E2F2;;chr12:54689552..54689574,-!p6@NFE2!1.78!59.87!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.68!47.32!GFI1B;;chrY:21906594..21906622,-!p1@KDM5D!1.67!45.49!KDM5D;;chrX:48644976..48644983,+!p2@GATA1!1.66!44.71!GATA1;;chr8:37963466..37963506,+!p3@ASH2L!1.62!50.72!ASH2L;;chr2:74229812..74229867,+!p1@TET3!1.60!93.86!TET3;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.69!PLEK;;chr11:16403910..16403933,-!p12@SOX6!1.57!35.82!SOX6;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.51!TAL1;;chr3:141747459..141747475,-!p1@TFDP2!1.50!245.75!TFDP2;;chr3:128212033..128212051,-!p1@GATA2!1.48!29.54!GATA2;;chr1:23857325..23857416,-!p2@E2F2!1.47!33.46!E2F2;;chr3:141747950..141748004,-!p7@TFDP2!1.41!24.84!TFDP2;;chr10:111967345..111967422,+!p1@MXI1!1.40!380.39!MXI1;;chr17:42299455..42299485,-!p12@UBTF!1.36!30.07!UBTF;;chr9:135854058..135854072,+!p3@GFI1B!1.36!21.96!GFI1B;;chrX:131623044..131623089,-!p1@MBNL3!1.31!78.69!MBNL3;;chr19:13213555..13213568,-!p5@LYL1!1.30!19.08!LYL1;;chr7:28220506..28220552,-!p3@JAZF1!1.30!18.82!JAZF1;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.51!MXD3;;chr7:50343634..50343717,+!p2@IKZF1!1.26!16.99!IKZF1;;chr12:54694686..54694697,-!p8@NFE2!1.24!16.21!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.23!19.35!MYB;;chr11:19262461..19262476,-!p5@E2F8!1.23!15.95!E2F8;;chrY:2803415..2803468,+!p1@ZFY!1.19!14.64!ZFY;;chrY:21906761..21906810,-!p2@KDM5D!1.18!14.12!KDM5D;;chr7:28220354..28220441,-!p1@JAZF1!1.17!213.07!JAZF1;;chr20:42295713..42295738,+!p2@MYBL2!1.17!80.26!MYBL2;;chr11:19263160..19263176,-!p1@E2F8!1.17!16.47!E2F8;;chr19:4067039..4067064,-!p3@ZBTB7A!1.16!39.22!ZBTB7A;;chr3:141748010..141748030,-!p8@TFDP2!1.16!13.59!TFDP2;;chr2:60780607..60780624,-!p2@BCL11A!1.15!40.26!BCL11A;;chr6:56954867..56954882,+!p2@ZNF451!1.15!38.17!ZNF451;;chr4:38665810..38665827,+!p1@KLF3!1.13!179.87!KLF3;;chr20:42295745..42295765,+!p1@MYBL2!1.12!198.95!MYBL2;;chrX:70316005..70316034,+!p2@FOXO4!1.12!21.96!FOXO4;;chr11:16627614..16627651,-!p4@SOX6!1.12!12.29!SOX6;;chr1:47696918..47696935,-!p6@TAL1!1.12!12.29!TAL1;;chr11:19262486..19262512,-!p4@E2F8!1.11!14.64!E2F8;;chr7:64363638..64363667,+!p1@ZNF273!1.10!58.82!ZNF273;;chr1:47697965..47697991,-!p7@TAL1!1.10!11.50!TAL1;;chr1:61548225..61548299,+!p1@NFIA!1.09!146.40!NFIA;;chr4:87928307..87928321,+!p8@AFF1!1.09!25.62!AFF1;;chr10:51565239..51565263,+!p2@NCOA4!1.08!255.68!NCOA4;;chr4:87928328..87928351,+!p6@AFF1!1.08!29.54!AFF1;;chr3:141747441..141747452,-!p4@TFDP2!1.08!15.42!TFDP2;;chr7:50343895..50343936,+!p5@IKZF1!1.08!10.98!IKZF1;;chrX:48645010..48645015,+!p3@GATA1!1.07!10.72!GATA1;;chr1:47697859..47697869,-!p14@TAL1!1.07!10.72!TAL1;;chrX:70315688..70315709,+!p1@FOXO4!1.06!24.57!FOXO4;;chrX:131622958..131622978,-!p3@MBNL3!1.04!12.55!MBNL3;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.67!TAL1;;chr7:50344144..50344157,+!p6@IKZF1!1.01!9.15!IKZF1;;chr4:38665769..38665801,+!p2@KLF3!1.00!83.66!KLF3;;chr1:47694935..47694944,-!p15@TAL1!1.00!8.89!TAL1;;chr13:114238997..114239077,+!p1@TFDP1!0.99!451.24!TFDP1;;chr16:67226019..67226127,+!p1@E2F4!0.99!117.12!E2F4;;chr14:55493763..55493824,-!p1@WDHD1!0.97!64.31!WDHD1;;chr2:60780753..60780800,-!p1@BCL11A!0.97!41.83!BCL11A;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.39!NFIA;;chrX:131623026..131623039,-!p5@MBNL3!0.96!8.10!MBNL3;;chr16:88519669..88519726,+!p1@ZFPM1!0.95!74.25!ZFPM1;;chr6:134274322..134274342,+!p3@TBPL1!0.95!25.62!TBPL1;;chr6:135502408..135502459,+!p2@MYB!0.95!9.15!MYB;;chr4:87928353..87928401,+!p4@AFF1!0.94!35.82!AFF1;;chr11:19263192..19263222,-!p2@E2F8!0.94!9.41!E2F8;;chr4:87928413..87928433,+!p3@AFF1!0.92!47.58!AFF1;;chr17:79881332..79881348,-!p3@MAFG!0.92!10.98!MAFG;;chr19:13213662..13213686,-!p1@LYL1!0.92!10.98!LYL1;;chr7:28220198..28220269,-!p2@JAZF1!0.91!67.19!JAZF1;;chr12:54691711..54691725,-!p7@NFE2!0.91!7.06!NFE2;;chr6:108882109..108882173,+!p2@FOXO3!0.90!39.22!FOXO3;;chr17:42298615..42298692,-!p2@UBTF!0.90!37.39!UBTF;;chr19:52074502..52074587,+!p1@ZNF175!0.90!26.14!ZNF175;;chr19:12203100..12203132,+!p1@ZNF788!0.89!14.12!ZNF788;;chr10:111985713..111985774,+!p2@MXI1!0.88!66.14!MXI1;;chr7:148581360..148581425,-!p1@EZH2!0.88!33.99!EZH2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.88!31.37!TAL1;;chr11:9482521..9482533,+!p2@ZNF14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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg38.nobarcode.ctss.bed.gz
|id=FF:11932-125I6
|id=FF:11932-125I6
|is_a=EFO:0002091;;FF:0000002;;FF:0011169
|is_a=EFO:0002091;;FF:0000002;;FF:0011169
|is_obsolete=
|is_obsolete=
|library_id=CNhs13553
|library_id_phase_based=2:CNhs13553
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11932
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11932
|name=CD34 cells differentiated to erythrocyte lineage, biol_ rep2
|name=CD34 cells differentiated to erythrocyte lineage, biol_ rep2
|namespace=
|namespace=
Line 46: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
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Line 59: Line 79:
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Line 80: Line 101:
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|top_motifs=GATA6:7.52841187377;MYB:2.85365330352;STAT5{A,B}:2.67524331462;ALX1:2.53036696492;E2F1..5:2.50586940554;NFY{A,B,C}:2.15739637781;NR6A1:2.00383400359;PBX1:1.89608053785;CDX1,2,4:1.7954571555;YY1:1.7868625378;POU1F1:1.66431094221;FOX{I1,J2}:1.60575024438;OCT4_SOX2{dimer}:1.46546254166;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24571763544;POU2F1..3:1.23335021467;ELK1,4_GABP{A,B1}:1.19071790845;TLX2:1.08856745523;ZNF143:1.05693139774;HOXA9_MEIS1:0.99931725044;FOX{F1,F2,J1}:0.935872344167;FOXN1:0.872393649834;SOX{8,9,10}:0.856581799237;PPARG:0.847981949256;ZBTB16:0.812292993939;POU3F1..4:0.804317584259;HAND1,2:0.79605438624;GFI1:0.758235542554;NFE2L2:0.711120655056;CUX2:0.707074798135;SREBF1,2:0.695911488678;HOX{A5,B5}:0.681891097955;TOPORS:0.641103623207;CREB1:0.626250311803;PITX1..3:0.580308503406;NR1H4:0.569892979644;NANOG:0.569757272213;NRF1:0.548559329077;NKX2-1,4:0.541990921084;BPTF:0.540787394829;FOX{D1,D2}:0.482738938183;CRX:0.472797557571;RFX2..5_RFXANK_RFXAP:0.443898979202;EVI1:0.425545423961;NFE2:0.41686508416;NR5A1,2:0.385211211442;TGIF1:0.358550613858;ATF5_CREB3:0.352852399701;RBPJ:0.340206146715;FOXP1:0.335814722753;FOXA2:0.317976580974;PAX8:0.286643501372;PAX2:0.279303395847;HBP1_HMGB_SSRP1_UBTF:0.236198450019;FOXP3:0.235118141626;TBP:0.174822835708;FOXQ1:0.172081690808;HMX1:0.162700009469;AR:0.158336409926;NKX3-2:0.150130285343;AIRE:0.143727860532;BREu{core}:0.136833960424;PAX3,7:0.132940309656;ZNF423:0.132332844983;NFIL3:0.109735197017;ZEB1:0.104582293142;IKZF2:0.0771201320963;PDX1:0.0704085202359;RORA:0.0666344182844;SNAI1..3:0.0561316893607;RUNX1..3:0.0278954255603;NKX3-1:-0.0266114995744;PAX6:-0.0625387013954;VSX1,2:-0.0664052607783;ATF4:-0.08356273055;HOX{A6,A7,B6,B7}:-0.0855239996422;ELF1,2,4:-0.0917741106234;NFE2L1:-0.105458607278;ZNF148:-0.115269551774;PAX4:-0.117110455542;PRRX1,2:-0.132067583886;HNF4A_NR2F1,2:-0.141276649988;MEF2{A,B,C,D}:-0.16192513566;ESRRA:-0.170878888845;LMO2:-0.173290179669;SPIB:-0.187832173152;TAL1_TCF{3,4,12}:-0.194491421315;NKX2-2,8:-0.196793867345;TFDP1:-0.205383161569;ARID5B:-0.232520596353;T:-0.247842555394;STAT2,4,6:-0.251967313358;HNF1A:-0.257921648611;TBX4,5:-0.262435811079;NANOG{mouse}:-0.271441449513;IRF1,2:-0.272715204174;LHX3,4:-0.281921314744;HES1:-0.299124024069;SPI1:-0.308082086391;ADNP_IRX_SIX_ZHX:-0.312321050347;MAFB:-0.314418818427;ZNF238:-0.314448734944;STAT1,3:-0.325817425544;SOX5:-0.343380414174;MYOD1:-0.349242262005;CDC5L:-0.351166100407;ATF2:-0.358854365924;NKX6-1,2:-0.365293824296;POU6F1:-0.386100248637;LEF1_TCF7_TCF7L1,2:-0.413010829477;CEBPA,B_DDIT3:-0.41715724818;FOXD3:-0.434669467767;FOXL1:-0.437626035572;FOXO1,3,4:-0.439762184839;TFAP4:-0.442383035439;NFKB1_REL_RELA:-0.452916622907;BACH2:-0.458103217061;IRF7:-0.471229382277;HLF:-0.47279323791;SMAD1..7,9:-0.488892720144;REST:-0.503342536236;RFX1:-0.507647504242;MYBL2:-0.517604666776;FOS_FOS{B,L1}_JUN{B,D}:-0.522254637369;RXRA_VDR{dimer}:-0.523893019572;NFIX:-0.5319363254;ALX4:-0.565766042197;ZNF384:-0.569324626368;DMAP1_NCOR{1,2}_SMARC:-0.571866348905;bHLH_family:-0.58990544786;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.591759088181;ETS1,2:-0.592044167119;TLX1..3_NFIC{dimer}:-0.607348812215;FOSL2:-0.612727744349;DBP:-0.62734857332;NKX2-3_NKX2-5:-0.63466743861;JUN:-0.634969909676;IKZF1:-0.674125851803;ZIC1..3:-0.699349850415;ZFP161:-0.704290938973;UFEwm:-0.724873085663;TP53:-0.73656981567;HOX{A4,D4}:-0.770011829482;ZBTB6:-0.779008895758;PAX1,9:-0.78941680301;MYFfamily:-0.805153759141;KLF4:-0.816144434497;MTF1:-0.842979800977;ONECUT1,2:-0.850363980886;AHR_ARNT_ARNT2:-0.878550295755;FOXM1:-0.924006187314;GLI1..3:-0.925601660231;NR3C1:-0.929020858288;EN1,2:-0.933778642143;SOX17:-0.958627920095;TEF:-0.959332336102;NHLH1,2:-0.962894940427;POU5F1:-1.01216971318;NFATC1..3:-1.04677228232;HSF1,2:-1.05246966914;GZF1:-1.06549794963;XBP1:-1.09944426964;MED-1{core}:-1.14394263149;RREB1:-1.14652498606;SPZ1:-1.14756457334;SRF:-1.17313671038;GTF2I:-1.22343363887;GTF2A1,2:-1.2345342447;TEAD1:-1.26129851462;MAZ:-1.26184104014;GCM1,2:-1.26548319312;SOX2:-1.37786449629;PAX5:-1.39193185549;GATA4:-1.47166304009;ESR1:-1.50838420457;PRDM1:-1.57012713867;MZF1:-1.58449761148;HMGA1,2:-1.59880224606;GFI1B:-1.62277445792;XCPE1{core}:-1.65032004581;TFCP2:-1.67236104405;ATF6:-1.6855900476;TFAP2B:-1.771262138;MTE{core}:-1.86872559263;EBF1:-1.91025083386;HIC1:-1.91067480883;EGR1..3:-1.92543209531;HIF1A:-2.02558207248;SP1:-2.15364471396;PATZ1:-2.17325247336;TFAP2{A,C}:-2.2190623739;RXR{A,B,G}:-2.22108911243;EP300:-2.26625787389
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11932-125I6;search_select_hide=table117:FF:11932-125I6
}}
}}

Latest revision as of 18:30, 4 June 2020

Name:CD34 cells differentiated to erythrocyte lineage, biol_ rep2
Species:Human (Homo sapiens)
Library ID:CNhs13553
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueBuffy coat
dev stageAdult
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationKim Summers
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004861
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13553 CAGE DRX008174 DRR009046
Accession ID Hg19

Library idBAMCTSS
CNhs13553 DRZ000471 DRZ001856
Accession ID Hg38

Library idBAMCTSS
CNhs13553 DRZ011821 DRZ013206
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.894
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.49
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.101
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.185
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.302
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0502
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0185
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.383
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.122
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.715
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0453
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.557
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.744
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen1.164
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.101
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13553

Jaspar motifP-value
MA0002.20.363
MA0003.10.656
MA0004.10.75
MA0006.10.87
MA0007.10.361
MA0009.10.376
MA0014.10.739
MA0017.10.194
MA0018.20.885
MA0019.10.854
MA0024.13.45536e-9
MA0025.10.748
MA0027.10.656
MA0028.10.0339
MA0029.10.0363
MA0030.10.937
MA0031.10.112
MA0035.21.43838e-38
MA0038.10.942
MA0039.20.961
MA0040.10.236
MA0041.10.482
MA0042.10.972
MA0043.10.463
MA0046.10.804
MA0047.20.512
MA0048.10.639
MA0050.10.977
MA0051.10.329
MA0052.10.0567
MA0055.10.116
MA0057.10.862
MA0058.10.551
MA0059.10.315
MA0060.11.29255e-8
MA0061.10.857
MA0062.20.0251
MA0065.20.00862
MA0066.10.0871
MA0067.10.605
MA0068.10.023
MA0069.10.49
MA0070.10.516
MA0071.10.205
MA0072.10.882
MA0073.10.765
MA0074.10.679
MA0076.10.0052
MA0077.10.139
MA0078.10.203
MA0079.20.0699
MA0080.20.0411
MA0081.10.922
MA0083.10.00884
MA0084.10.693
MA0087.10.165
MA0088.10.0125
MA0090.10.14
MA0091.10.112
MA0092.10.493
MA0093.10.824
MA0099.20.204
MA0100.10.00793
MA0101.10.294
MA0102.20.0575
MA0103.10.346
MA0104.20.117
MA0105.10.00437
MA0106.10.527
MA0107.10.0452
MA0108.20.0237
MA0111.10.231
MA0112.20.00813
MA0113.10.742
MA0114.10.0949
MA0115.10.107
MA0116.12.79206e-6
MA0117.10.48
MA0119.10.0546
MA0122.10.47
MA0124.10.369
MA0125.10.398
MA0131.10.367
MA0135.10.0388
MA0136.10.947
MA0137.20.477
MA0138.20.565
MA0139.10.339
MA0140.12.72394e-84
MA0141.10.0388
MA0142.10.424
MA0143.10.28
MA0144.10.438
MA0145.10.905
MA0146.10.272
MA0147.10.1
MA0148.10.355
MA0149.10.0195
MA0150.10.0011
MA0152.10.863
MA0153.10.483
MA0154.10.0364
MA0155.10.512
MA0156.10.784
MA0157.10.152
MA0159.10.306
MA0160.10.0869
MA0162.10.643
MA0163.15.84113e-10
MA0164.10.6
MA0258.10.0392
MA0259.10.411



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13553

Novel motifP-value
10.0119
100.018
1000.286
1010.0563
1020.731
1030.28
1040.583
1050.492
1060.99
1070.194
1080.322
1090.025
110.039
1100.182
1110.271
1120.407
1130.837
1140.276
1150.0632
1160.408
1170.0361
1180.396
1190.841
120.235
1200.465
1210.696
1220.465
1230.0217
1240.354
1250.129
1260.906
1270.402
1280.768
1290.627
130.0335
1300.933
1310.787
1320.0923
1330.118
1340.721
1350.772
1360.366
1370.754
1380.957
1390.953
140.741
1400.468
1410.0767
1420.781
1430.172
1440.288
1450.808
1460.685
1470.106
1480.306
1490.933
150.0325
1500.933
1510.615
1520.133
1530.525
1540.468
1550.0616
1560.082
1570.322
1580.904
1590.0485
160.399
1600.62
1610.0913
1620.8
1630.0883
1640.296
1650.157
1660.932
1670.22
1680.822
1690.518
170.75
180.512
190.579
20.513
200.186
210.183
220.837
230.37
240.322
250.104
260.125
270.856
280.416
290.0124
30.19
300.101
310.899
320.255
330.184
340.572
350.22
360.0215
370.324
380.295
390.643
40.878
400.128
410.438
420.138
430.202
440.39
450.762
460.0877
470.0195
480.146
490.0459
50.257
500.606
510.88
520.662
530.457
540.865
550.869
560.621
570.0203
580.202
590.895
60.344
600.932
610.772
620.0604
630.737
640.276
650.726
660.0175
670.626
680.233
690.243
70.0627
700.818
710.0253
720.661
730.821
740.389
750.00759
760.527
770.999
780.0109
790.165
80.274
800.909
810.488
820.338
830.243
840.919
850.67
860.688
870.26
880.969
890.937
90.919
900.0232
910.685
920.823
930.185
940.3
950.0718
960.115
970.558
980.0549
990.107



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13553


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000764 (erythroid lineage cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000558 (reticulocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011169 (human reticulocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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