FF:12246-129H5: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Eosinophils, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12549
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	eosinophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-90-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005271

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12549		CAGE		DRX008077		DRR008949

Accession ID Hg19

Library id		BAM		CTSS
CNhs12549		DRZ000374		DRZ001759

Accession ID Hg38

Library id		BAM		CTSS
CNhs12549		DRZ011724		DRZ013109

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.223
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.599
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.513
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.42
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.688
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.651
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	1.144
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.956
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.552
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	1.385
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.23
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.309
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.529
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.399
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.936
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	1.07
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.757
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.653
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.887
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.742
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.889
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.198
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	1.265
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.022
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.942
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	1.102
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12549

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.64165e-12
MA0003.1	MA0003.1	0.125
MA0004.1	MA0004.1	0.931
MA0006.1	MA0006.1	0.507
MA0007.1	MA0007.1	0.896
MA0009.1	MA0009.1	0.0709
MA0014.1	MA0014.1	0.78
MA0017.1	MA0017.1	0.0892
MA0018.2	MA0018.2	1.36222e-4
MA0019.1	MA0019.1	0.624
MA0024.1	MA0024.1	0.00673
MA0025.1	MA0025.1	8.19943e-6
MA0027.1	MA0027.1	0.836
MA0028.1	MA0028.1	0.193
MA0029.1	MA0029.1	0.873
MA0030.1	MA0030.1	1.32762e-4
MA0031.1	MA0031.1	0.00387
MA0035.2	MA0035.2	0.967
MA0038.1	MA0038.1	0.133
MA0039.2	MA0039.2	0.947
MA0040.1	MA0040.1	0.00164
MA0041.1	MA0041.1	0.132
MA0042.1	MA0042.1	0.0209
MA0043.1	MA0043.1	2.42591e-13
MA0046.1	MA0046.1	0.31
MA0047.2	MA0047.2	0.018
MA0048.1	MA0048.1	0.656
MA0050.1	MA0050.1	0.00124
MA0051.1	MA0051.1	0.132
MA0052.1	MA0052.1	0.769
MA0055.1	MA0055.1	0.328
MA0057.1	MA0057.1	0.231
MA0058.1	MA0058.1	0.767
MA0059.1	MA0059.1	0.739
MA0060.1	MA0060.1	2.13981e-5
MA0061.1	MA0061.1	1.16745e-14
MA0062.2	MA0062.2	0.108
MA0065.2	MA0065.2	0.0135
MA0066.1	MA0066.1	0.00603
MA0067.1	MA0067.1	3.18318e-4
MA0068.1	MA0068.1	0.352
MA0069.1	MA0069.1	0.33
MA0070.1	MA0070.1	0.0173
MA0071.1	MA0071.1	0.264
MA0072.1	MA0072.1	0.793
MA0073.1	MA0073.1	0.151
MA0074.1	MA0074.1	0.189
MA0076.1	MA0076.1	0.279
MA0077.1	MA0077.1	0.303
MA0078.1	MA0078.1	0.46
MA0079.2	MA0079.2	0.666
MA0080.2	MA0080.2	2.19194e-15
MA0081.1	MA0081.1	6.25985e-5
MA0083.1	MA0083.1	0.1
MA0084.1	MA0084.1	0.929
MA0087.1	MA0087.1	0.618
MA0088.1	MA0088.1	0.259
MA0090.1	MA0090.1	0.349
MA0091.1	MA0091.1	0.937
MA0092.1	MA0092.1	0.682
MA0093.1	MA0093.1	0.975
MA0099.2	MA0099.2	5.91061e-15
MA0100.1	MA0100.1	0.949
MA0101.1	MA0101.1	6.90177e-15
MA0102.2	MA0102.2	9.89264e-12
MA0103.1	MA0103.1	0.934
MA0104.2	MA0104.2	0.823
MA0105.1	MA0105.1	2.43383e-15
MA0106.1	MA0106.1	0.483
MA0107.1	MA0107.1	3.8186e-19
MA0108.2	MA0108.2	0.226
MA0111.1	MA0111.1	0.726
MA0112.2	MA0112.2	9.82225e-4
MA0113.1	MA0113.1	0.793
MA0114.1	MA0114.1	0.278
MA0115.1	MA0115.1	0.443
MA0116.1	MA0116.1	7.08686e-4
MA0117.1	MA0117.1	0.0329
MA0119.1	MA0119.1	0.545
MA0122.1	MA0122.1	0.515
MA0124.1	MA0124.1	0.809
MA0125.1	MA0125.1	0.202
MA0131.1	MA0131.1	0.619
MA0135.1	MA0135.1	0.131
MA0136.1	MA0136.1	2.59506e-17
MA0137.2	MA0137.2	0.0689
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.905
MA0140.1	MA0140.1	0.567
MA0141.1	MA0141.1	0.0639
MA0142.1	MA0142.1	0.858
MA0143.1	MA0143.1	0.771
MA0144.1	MA0144.1	0.0375
MA0145.1	MA0145.1	0.239
MA0146.1	MA0146.1	0.14
MA0147.1	MA0147.1	0.655
MA0148.1	MA0148.1	0.114
MA0149.1	MA0149.1	0.641
MA0150.1	MA0150.1	5.76977e-13
MA0152.1	MA0152.1	0.231
MA0153.1	MA0153.1	0.124
MA0154.1	MA0154.1	2.46299e-4
MA0155.1	MA0155.1	0.496
MA0156.1	MA0156.1	1.04935e-10
MA0157.1	MA0157.1	0.0261
MA0159.1	MA0159.1	0.0247
MA0160.1	MA0160.1	0.0311
MA0162.1	MA0162.1	0.594
MA0163.1	MA0163.1	7.19641e-4
MA0164.1	MA0164.1	0.899
MA0258.1	MA0258.1	0.0187
MA0259.1	MA0259.1	0.418

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12549

Novel motif	Logo	P-value
1	1	0.162
10	10	0.0786
100	100	0.569
101	101	0.743
102	102	0.918
103	103	0.269
104	104	0.563
105	105	0.134
106	106	4.64773e-4
107	107	0.324
108	108	0.583
109	109	0.193
11	11	0.228
110	110	0.432
111	111	0.378
112	112	0.306
113	113	0.417
114	114	0.0239
115	115	0.199
116	116	0.917
117	117	0.0617
118	118	0.0966
119	119	0.291
12	12	0.423
120	120	0.606
121	121	0.996
122	122	0.666
123	123	0.374
124	124	0.69
125	125	0.183
126	126	0.123
127	127	0.497
128	128	0.0188
129	129	0.517
13	13	0.441
130	130	0.685
131	131	0.667
132	132	0.0999
133	133	0.755
134	134	0.485
135	135	0.187
136	136	0.72
137	137	0.00105
138	138	0.239
139	139	0.11
14	14	0.309
140	140	0.908
141	141	0.504
142	142	0.518
143	143	0.00668
144	144	0.964
145	145	0.796
146	146	0.679
147	147	0.535
148	148	0.121
149	149	0.531
15	15	0.0762
150	150	0.678
151	151	0.268
152	152	0.281
153	153	0.884
154	154	0.906
155	155	0.277
156	156	0.838
157	157	0.961
158	158	0.0124
159	159	0.303
16	16	0.47
160	160	0.769
161	161	0.778
162	162	0.0912
163	163	0.413
164	164	0.171
165	165	0.232
166	166	0.842
167	167	0.998
168	168	0.26
169	169	0.0483
17	17	0.2
18	18	0.122
19	19	0.46
2	2	0.766
20	20	0.606
21	21	0.929
22	22	0.224
23	23	0.00747
24	24	0.525
25	25	0.325
26	26	0.141
27	27	0.798
28	28	0.339
29	29	0.405
3	3	0.333
30	30	0.768
31	31	0.751
32	32	0.72
33	33	0.39
34	34	0.536
35	35	0.134
36	36	0.157
37	37	0.133
38	38	0.402
39	39	0.885
4	4	0.724
40	40	0.237
41	41	0.00493
42	42	0.632
43	43	0.0648
44	44	0.95
45	45	0.403
46	46	0.304
47	47	0.625
48	48	0.634
49	49	0.104
5	5	0.115
50	50	0.877
51	51	0.348
52	52	0.229
53	53	0.301
54	54	0.288
55	55	0.861
56	56	0.609
57	57	0.791
58	58	0.195
59	59	0.0629
6	6	0.729
60	60	0.0289
61	61	0.307
62	62	0.0709
63	63	0.485
64	64	0.491
65	65	0.152
66	66	0.322
67	67	0.574
68	68	0.463
69	69	0.589
7	7	0.218
70	70	0.172
71	71	0.0587
72	72	0.548
73	73	0.35
74	74	0.0561
75	75	0.294
76	76	0.218
77	77	0.489
78	78	0.286
79	79	0.993
8	8	0.976
80	80	0.0268
81	81	0.415
82	82	0.073
83	83	0.0525
84	84	0.587
85	85	0.0654
86	86	0.0358
87	87	0.432
88	88	0.614
89	89	0.148
9	9	0.221
90	90	0.111
91	91	0.445
92	92	0.312
93	93	0.0778
94	94	0.0392
95	95	0.378
96	96	0.344
97	97	0.902
98	98	0.124
99	99	0.0342

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12549

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000249 human eosinophil- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000771 (eosinophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000054 (human eosinophil sample)
0000249 (human eosinophil- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005271
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000094,CL:0000037,CL:0000566,CL:0000049,CL:0000771,CL:0000837
+|accession_numbers=CAGE;DRX008077;DRR008949;DRZ000374;DRZ001759;DRZ011724;DRZ013109
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000771
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000054,FF:0000249
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.84!6898.61!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.24!1752.77!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.71!2718.34!MXD1;;chr11:47400062..47400077,-!p2@SPI1!2.49!306.35!SPI1;;chr19:45252008..45252024,+!p2@BCL3!2.44!864.75!BCL3;;chr8:22550982..22550999,-!p1@EGR3!2.43!717.39!EGR3;;chr19:36391434..36391450,-!p1@NFKBID!2.39!461.46!NFKBID;;chr14:35873947..35873965,-!p1@NFKBIA!2.38!14095.81!NFKBIA;;chr10:35484053..35484076,+!p1@CREM!2.34!523.50!CREM;;chr3:101568349..101568365,+!p1@NFKBIZ!2.33!10311.08!NFKBIZ;;chr9:102584262..102584276,+!p1@NR4A3!2.27!395.54!NR4A3;;chr14:35872962..35873025,-!p3@NFKBIA!2.26!434.31!NFKBIA;;chr3:39195075..39195088,-!p1@CSRNP1!2.23!984.96!CSRNP1;;chr2:157189180..157189290,-!p1@NR4A2!2.21!791.07!NR4A2;;chr11:47399947..47399961,-!p3@SPI1!2.19!155.11!SPI1;;chr6:12011943..12012015,+!p2@HIVEP1!2.17!445.95!HIVEP1;;chr10:104155659..104155676,+!p4@NFKB2!2.16!178.38!NFKB2;;chr19:45971246..45971265,+!p1@FOSB!2.12!2256.88!FOSB;;chr6:44233252..44233296,-!p1@NFKBIE!2.12!1206.00!NFKBIE;;chr10:104155480..104155534,+!p2@NFKB2!2.12!791.07!NFKB2;;chr1:151030536..151030549,+!p8@MLLT11!2.12!131.85!MLLT11;;chr5:131826457..131826514,-!p1@IRF1!2.11!4626.22!IRF1;;chr3:39195037..39195069,-!p2@CSRNP1!2.11!748.42!CSRNP1;;chr7:50344289..50344323,+!p1@IKZF1!2.10!124.09!IKZF1;;chr16:31885093..31885165,+!p1@ZNF267!2.09!1752.77!ZNF267;;chr2:231090471..231090504,+!p2@SP140!2.08!120.21!SP140;;chr11:47400032..47400043,-!p5@SPI1!2.08!120.21!SPI1;;chr14:75745523..75745537,+!p1@FOS!2.07!12858.79!FOS;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!158.99!NFKBIZ;;chr5:142782823..142782854,-!p3@NR3C1!2.04!151.23!NR3C1;;chr10:104154415..104154434,+!p5@NFKB2!2.04!108.58!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!2.03!127.97!PLAGL1;;chr10:104154246..104154347,+!p3@NFKB2!2.02!604.94!NFKB2;;chr1:37940170..37940190,+!p1@ZC3H12A!2.00!1147.83!ZC3H12A;;chr17:38498594..38498661,+!p2@RARA!2.00!314.10!RARA;;chr8:123793988..123794016,+!p1@ZHX2!2.00!170.62!ZHX2;;chr9:102584241..102584261,+!p4@NR4A3!2.00!151.23!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.99!624.33!REL;;chr14:35872926..35872951,-!p4@NFKBIA!1.98!131.85!NFKBIA;;chr2:70142189..70142223,+!p2@MXD1!1.97!624.33!MXD1;;chr2:68592394..68592405,+!p2@PLEK!1.97!93.07!PLEK;;chr2:61108808..61108821,+!p3@REL!1.96!112.46!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.94!158.99!NR4A3;;chr2:70167296..70167306,+!p3@MXD1!1.94!127.97!MXD1;;chr7:28725715..28725727,+!p3@CREB5!1.94!100.82!CREB5;;chr11:47399996..47400014,-!p4@SPI1!1.94!85.31!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!1.93!201.65!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.93!112.46!THAP2;;chr4:83822199..83822239,+!p2@THAP9!1.93!100.82!THAP9;;chr5:176735063..176735088,-!p2@MXD3!1.92!81.43!MXD3;;chr19:45250948..45250998,+!p3@BCL3!1.91!193.89!BCL3;;chr19:12902289..12902307,+!p1@JUNB!1.88!15813.68!JUNB;;chr17:38497662..38497713,+!p4@RARA!1.88!85.31!RARA;;chr19:16435625..16435682,+!p1@KLF2!1.86!2167.69!KLF2;;chr7:64126535..64126559,+!p2@ZNF107!1.86!147.36!ZNF107;;chr17:40429090..40429125,-!p3@STAT5B!1.85!69.80!STAT5B;;chr4:83822246..83822277,+!p5@THAP9!1.85!69.80!THAP9;;chr11:47400045..47400060,-!p6@SPI1!1.85!69.80!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.84!376.15!NCOA4;;chr10:35416142..35416169,+!p3@CREM!1.82!166.75!CREM;;chr3:39195139..39195150,-!p3@CSRNP1!1.82!81.43!CSRNP1;;chr22:38597987..38598021,+!p2@MAFF!1.80!360.64!MAFF;;chr12:57914286..57914304,-!p1@DDIT3!1.79!2035.85!DDIT3;;chr3:187463179..187463201,-!p2@BCL6!1.79!240.42!BCL6;;chr7:28725740..28725778,+!p1@CREB5!1.77!488.60!CREB5;;chr1:156470515..156470542,-!p2@MEF2D!1.77!290.84!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!1.77!73.68!THAP2;;chr4:106068026..106068084,+!p1@TET2!1.76!480.85!TET2;;chr19:45251943..45252006,+!p1@BCL3!1.75!1376.62!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!1.75!135.72!PRDM1;;chr2:61108771..61108789,+!p4@REL!1.75!81.43!REL;;chr2:97202480..97202499,+!p1@ARID5A!1.74!511.87!ARID5A;;chr20:48807171..48807234,+!p4@CEBPB!1.74!116.33!CEBPB;;chr19:45251395..45251432,+!p8@BCL3!1.74!54.29!BCL3;;chr2:145275162..145275202,-!p2@ZEB2!1.71!279.20!ZEB2;;chr20:56195474..56195506,-!p1@ZBP1!1.71!50.41!ZBP1;;chr2:208394817..208394834,+!p3@CREB1!1.70!190.01!CREB1;;chr1:8484007..8484061,-!p13@RERE!1.70!62.04!RERE;;chr6:12012170..12012245,+!p1@HIVEP1!1.69!232.67!HIVEP1;;chr7:149470641..149470694,-!p1@ZNF467!1.69!205.52!ZNF467;;chr4:103422499..103422632,+!p1@NFKB1!1.68!922.92!NFKB1;;chr10:31288398..31288455,-!p2@ZNF438!1.68!54.29!ZNF438;;chr2:231090433..231090469,+!p1@SP140!1.68!46.53!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.68!46.53!IKZF1;;chr17:38497715..38497734,+!p8@RARA!1.68!46.53!RARA;;chr9:88969339..88969422,-!p2@ZCCHC6!1.67!341.25!ZCCHC6;;chr17:38498402..38498445,+!p3@RARA!1.67!158.99!RARA;;chr9:137217986..137218049,+!p3@RXRA!1.66!124.09!RXRA;;chr1:25256756..25256774,-!p1@RUNX3!1.66!81.43!RUNX3;;chr6:106534192..106534224,+!p1@PRDM1!1.65!120.21!PRDM1;;chr10:35484090..35484104,+!p6@CREM!1.64!42.66!CREM;;chr9:94173455..94173468,-!p4@NFIL3!1.64!42.66!NFIL3;;chr12:54694758..54694805,-!p1@NFE2!1.63!50.41!NFE2;;chr2:28615716..28615733,+!p1@FOSL2!1.62!1799.30!FOSL2;;chr9:117150254..117150271,-!p1@AKNA!1.62!108.58!AKNA;;chr20:48807351..48807384,+!p1@CEBPB!1.61!3835.15!CEBPB;;chr7:106809470..106809481,+!p2@HBP1!1.60!54.29!HBP1;;chr19:45257891..45257908,+!p17@BCL3!1.60!38.78!BCL3;;chr4:140098339..140098392,-!p1@ELF2!1.59!298.59!ELF2;;chr2:28618532..28618610,+!p4@FOSL2!1.58!62.04!FOSL2;;chr9:94186101..94186122,-!p1@NFIL3!1.57!480.85!NFIL3;;chr12:48298785..48298828,-!p1@VDR!1.57!186.13!VDR;;chr20:48807456..48807475,+!p3@CEBPB!1.56!65.92!CEBPB;;chr2:231084639..231084654,-!p2@SP110!1.56!58.17!SP110;;chr2:208031943..208031978,-!p5@KLF7!1.56!46.53!KLF7;;chr12:8205566..8205581,+!p8@FOXJ2!1.56!34.90!FOXJ2;;chr7:99680193..99680204,-!p2@ZNF3!1.56!34.90!ZNF3;;chr14:75988831..75988847,+!p2@BATF!1.56!34.90!BATF;;chr22:38598057..38598071,+!p3@MAFF!1.54!77.56!MAFF;;chr19:47616992..47617011,-!p4@ZC3H4!1.54!69.80!ZC3H4;;chrX:106960180..106960197,-!p2@TSC22D3!1.53!120.21!TSC22D3;;chr2:157198916..157198978,-!p2@NR4A2!1.53!112.46!NR4A2;;chr7:44924939..44924993,-!p2@PURB!1.53!62.04!PURB;;chr9:102584159..102584174,+!p2@NR4A3!1.53!58.17!NR4A3;;chr9:127533519..127533573,-!p2@NR6A1!1.52!38.78!NR6A1;;chr1:38325227..38325246,-!p2@MTF1!1.51!42.66!MTF1;;chr12:72056749..72056767,+!p6@THAP2!1.51!34.90!THAP2;;chr11:47399920..47399931,-!p7@SPI1!1.51!31.02!SPI1;;chr17:40428334..40428345,-!p2@STAT5B!1.51!31.02!STAT5B;;chr6:15246799..15246810,+!p18@JARID2!1.51!31.02!JARID2;;chr2:61108878..61108891,+!p5@REL!1.51!31.02!REL;;chr16:3313791..3313834,+!p2@ZNF263!1.50!65.92!ZNF263;;chr2:70314240..70314256,+!p4@PCBP1!1.50!62.04!PCBP1;;chr21:40177892..40177903,+!p2@ETS2!1.49!116.33!ETS2;;chr1:154975110..154975149,+!p2@ZBTB7B!1.49!62.04!ZBTB7B;;chr7:104654690..104654704,+!p2@MLL5!1.49!58.17!MLL5;;chr2:145277640..145277771,-!p1@ZEB2!1.47!368.39!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.47!197.77!ELF4;;chr14:62162285..62162296,+!p3@HIF1A!1.47!143.48!HIF1A;;chr3:170075124..170075136,+!p4@SKIL!1.47!38.78!SKIL;;chr14:64970670..64970712,-!p3@ZBTB25!1.45!58.17!ZBTB25;;chr5:172483414..172483425,+!p3@C5orf41!1.45!27.14!CREBRF;;chrX:129244430..129244442,-!p5@ELF4!1.45!27.14!ELF4;;chr16:69600058..69600065,+!p9@NFAT5!1.45!27.14!NFAT5;;chr19:18392422..18392440,-!p1@JUND!1.44!3455.12!JUND;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.44!42.66!PCBP2;;chr14:64971288..64971316,-!p2@ZBTB25!1.43!77.56!ZBTB25;;chr9:88969287..88969297,-!p3@ZCCHC6!1.43!34.90!ZCCHC6;;chrX:106960285..106960299,-!p1@TSC22D3!1.42!643.72!TSC22D3;;chr21:30671235..30671253,+!p1@BACH1!1.41!302.47!BACH1;;chr7:104654718..104654741,+!p3@MLL5!1.40!34.90!MLL5;;chr14:62162258..62162269,+!p2@HIF1A!1.39!221.03!HIF1A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.39!213.28!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!1.39!170.62!CREBRF;;chr1:67395855..67395872,+!p5@MIER1!1.39!34.90!MIER1;;chr20:48807430..48807439,+!p8@CEBPB!1.39!34.90!CEBPB;;chr14:75988771..75988826,+!p1@BATF!1.39!31.02!BATF;;chr14:69261310..69261326,-!p5@ZFP36L1!1.39!31.02!ZFP36L1;;chr11:65430535..65430549,-!p4@RELA!1.39!27.14!RELA;;chr10:104155680..104155687,+!p6@NFKB2!1.39!23.27!NFKB2;;chr12:54694653..54694672,-!p2@NFE2!1.39!23.27!NFE2;;chr12:57917037..57917052,+!p9@MBD6!1.39!23.27!MBD6;;chr2:43454125..43454146,-!p2@ZFP36L2!1.39!23.27!ZFP36L2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.39!23.27!NFKBIZ;;chr4:103423079..103423112,+!p4@NFKB1!1.39!23.27!NFKB1;;chr6:15246741..15246765,+!p9@JARID2!1.39!23.27!JARID2;;chr8:123794038..123794056,+!p5@ZHX2!1.39!23.27!ZHX2;;chr14:75746340..75746368,+!p3@FOS!1.39!23.27!FOS;;chr2:192015701..192015743,-!p1@STAT4!1.38!31.02!STAT4;;chr2:208031542..208031595,-!p2@KLF7!1.37!155.11!KLF7;;chr17:40440481..40440550,+!p1@STAT5A!1.37!155.11!STAT5A;;chr19:45504688..45504782,+!p1@RELB!1.37!131.85!RELB;;chr6:12012249..12012266,+!p5@HIVEP1!1.37!38.78!HIVEP1;;chr4:185395191..185395226,-!p4@IRF2!1.37!31.02!IRF2;;chr17:36861675..36861697,+!p3@MLLT6!1.36!50.41!MLLT6;;chr6:143266297..143266356,-!p1@HIVEP2!1.35!100.82!HIVEP2;;chr3:5020939..5020952,+!p2@BHLHE40!1.35!65.92!BHLHE40;;chr1:156470494..156470505,-!p3@MEF2D!1.35!31.02!MEF2D;;chr14:75746722..75746777,+!p2@FOS!1.35!27.14!FOS;;chr6:44355499..44355514,+!p3@CDC5L!1.35!23.27!CDC5L;;chr17:40428359..40428462,-!p1@STAT5B!1.34!255.93!STAT5B;;chr10:51572339..51572376,+!p4@NCOA4!1.34!46.53!NCOA4;;chr8:71316428..71316459,-!p2@NCOA2!1.34!34.90!NCOA2;;chr14:62162224..62162254,+!p1@HIF1A!1.33!2838.55!HIF1A;;chr8:103667935..103667960,-!p1@KLF10!1.33!876.38!KLF10;;chr2:231084659..231084721,-!p1@SP110!1.33!457.58!SP110;;chr3:63898321..63898396,+!p3@ATXN7!1.33!46.53!ATXN7;;chr14:35872494..35872511,-!p5@NFKBIA!1.33!27.14!NFKBIA;;chr8:71316021..71316068,-!p1@NCOA2!1.32!178.38!NCOA2;;chr4:38665769..38665801,+!p2@KLF3!1.32!174.50!KLF3;;chr9:94186131..94186174,-!p2@NFIL3!1.32!158.99!NFIL3;;chr13:41593425..41593480,-!p1@ELF1!1.32!124.09!ELF1;;chr9:3525727..3525828,-!p2@RFX3!1.32!50.41!RFX3;;chr3:170075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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor3.CNhs12549.12246-129H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor3.CNhs12549.12246-129H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor3.CNhs12549.12246-129H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor3.CNhs12549.12246-129H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor3.CNhs12549.12246-129H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:12246-129H5
 |is_a=EFO:0002091;;FF:0000249
 |is_obsolete=
+|library_id=CNhs12549
+|library_id_phase_based=2:CNhs12549
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12246
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12246
 |name=Eosinophils, donor3
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12549,LSID920,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=3H100-90-5
@@ Line 59: / Line 79: @@
 |rna_weight_ug=1.06224
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12246-129H5;search_select_hide=table117:FF:12246-129H5
 }}

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FF:12246-129H5: Difference between revisions

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Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0