FF:10053-101G8: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	blood, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11761
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	18-47 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9090107A
catalog number	Cat:636592
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005780

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11761		CAGE		DRX008623		DRR009495

Accession ID Hg19

Library id		BAM		CTSS
CNhs11761		DRZ000920		DRZ002305

Accession ID Hg38

Library id		BAM		CTSS
CNhs11761		DRZ012270		DRZ013655

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.315
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.343
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.024
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.493
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.531
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.232
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.531
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0521
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.763
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.638
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.763
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	1.042
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.192
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.913
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.531
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.526
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.374
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.531
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.518
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.318
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.583
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.531
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.851
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.531
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11761

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.92241e-7
MA0003.1	MA0003.1	0.0781
MA0004.1	MA0004.1	0.667
MA0006.1	MA0006.1	0.532
MA0007.1	MA0007.1	0.409
MA0009.1	MA0009.1	0.0991
MA0014.1	MA0014.1	0.675
MA0017.1	MA0017.1	0.0216
MA0018.2	MA0018.2	0.203
MA0019.1	MA0019.1	0.488
MA0024.1	MA0024.1	0.0198
MA0025.1	MA0025.1	0.296
MA0027.1	MA0027.1	0.653
MA0028.1	MA0028.1	0.0487
MA0029.1	MA0029.1	0.523
MA0030.1	MA0030.1	0.681
MA0031.1	MA0031.1	0.166
MA0035.2	MA0035.2	2.13604e-4
MA0038.1	MA0038.1	0.00155
MA0039.2	MA0039.2	0.871
MA0040.1	MA0040.1	0.869
MA0041.1	MA0041.1	0.938
MA0042.1	MA0042.1	0.753
MA0043.1	MA0043.1	0.327
MA0046.1	MA0046.1	0.447
MA0047.2	MA0047.2	0.628
MA0048.1	MA0048.1	0.246
MA0050.1	MA0050.1	9.86178e-7
MA0051.1	MA0051.1	0.0126
MA0052.1	MA0052.1	0.208
MA0055.1	MA0055.1	0.0609
MA0057.1	MA0057.1	0.71
MA0058.1	MA0058.1	0.532
MA0059.1	MA0059.1	0.973
MA0060.1	MA0060.1	1.06115e-4
MA0061.1	MA0061.1	0.0863
MA0062.2	MA0062.2	0.579
MA0065.2	MA0065.2	0.00577
MA0066.1	MA0066.1	0.0868
MA0067.1	MA0067.1	0.97
MA0068.1	MA0068.1	0.409
MA0069.1	MA0069.1	0.676
MA0070.1	MA0070.1	0.00767
MA0071.1	MA0071.1	0.243
MA0072.1	MA0072.1	0.735
MA0073.1	MA0073.1	0.305
MA0074.1	MA0074.1	0.389
MA0076.1	MA0076.1	0.0503
MA0077.1	MA0077.1	0.21
MA0078.1	MA0078.1	0.509
MA0079.2	MA0079.2	0.519
MA0080.2	MA0080.2	9.5595e-16
MA0081.1	MA0081.1	0.013
MA0083.1	MA0083.1	0.704
MA0084.1	MA0084.1	0.22
MA0087.1	MA0087.1	0.595
MA0088.1	MA0088.1	0.985
MA0090.1	MA0090.1	0.0605
MA0091.1	MA0091.1	0.159
MA0092.1	MA0092.1	0.485
MA0093.1	MA0093.1	0.49
MA0099.2	MA0099.2	0.395
MA0100.1	MA0100.1	0.508
MA0101.1	MA0101.1	0.987
MA0102.2	MA0102.2	0.00601
MA0103.1	MA0103.1	0.12
MA0104.2	MA0104.2	0.681
MA0105.1	MA0105.1	6.36607e-5
MA0106.1	MA0106.1	0.567
MA0107.1	MA0107.1	0.974
MA0108.2	MA0108.2	0.00795
MA0111.1	MA0111.1	0.287
MA0112.2	MA0112.2	0.00107
MA0113.1	MA0113.1	0.885
MA0114.1	MA0114.1	0.183
MA0115.1	MA0115.1	0.632
MA0116.1	MA0116.1	6.85802e-6
MA0117.1	MA0117.1	0.946
MA0119.1	MA0119.1	0.398
MA0122.1	MA0122.1	0.613
MA0124.1	MA0124.1	0.123
MA0125.1	MA0125.1	0.0965
MA0131.1	MA0131.1	0.217
MA0135.1	MA0135.1	0.683
MA0136.1	MA0136.1	7.77053e-12
MA0137.2	MA0137.2	0.126
MA0138.2	MA0138.2	0.329
MA0139.1	MA0139.1	0.344
MA0140.1	MA0140.1	1.40007e-12
MA0141.1	MA0141.1	0.295
MA0142.1	MA0142.1	0.582
MA0143.1	MA0143.1	0.739
MA0144.1	MA0144.1	0.85
MA0145.1	MA0145.1	0.0867
MA0146.1	MA0146.1	0.0314
MA0147.1	MA0147.1	0.818
MA0148.1	MA0148.1	0.885
MA0149.1	MA0149.1	0.268
MA0150.1	MA0150.1	0.0164
MA0152.1	MA0152.1	0.0686
MA0153.1	MA0153.1	0.101
MA0154.1	MA0154.1	0.00379
MA0155.1	MA0155.1	0.504
MA0156.1	MA0156.1	3.56996e-4
MA0157.1	MA0157.1	0.0902
MA0159.1	MA0159.1	0.0229
MA0160.1	MA0160.1	0.407
MA0162.1	MA0162.1	0.158
MA0163.1	MA0163.1	2.74592e-7
MA0164.1	MA0164.1	0.845
MA0258.1	MA0258.1	0.00535
MA0259.1	MA0259.1	0.422

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11761

Novel motif	Logo	P-value
1	1	0.103
10	10	0.0726
100	100	0.92
101	101	0.256
102	102	0.707
103	103	0.103
104	104	0.953
105	105	0.0977
106	106	0.00204
107	107	0.18
108	108	0.946
109	109	0.128
11	11	0.0595
110	110	0.606
111	111	0.238
112	112	0.0968
113	113	0.174
114	114	0.0428
115	115	0.439
116	116	0.504
117	117	0.0839
118	118	0.705
119	119	0.255
12	12	0.619
120	120	0.657
121	121	0.498
122	122	0.514
123	123	0.0101
124	124	0.109
125	125	0.0235
126	126	0.359
127	127	0.17
128	128	0.025
129	129	0.582
13	13	0.61
130	130	0.334
131	131	0.969
132	132	0.647
133	133	0.328
134	134	0.857
135	135	0.458
136	136	0.79
137	137	0.101
138	138	0.0717
139	139	0.0131
14	14	0.335
140	140	0.0419
141	141	0.481
142	142	0.931
143	143	4.71449e-4
144	144	0.625
145	145	0.232
146	146	0.735
147	147	0.431
148	148	0.082
149	149	0.349
15	15	0.0735
150	150	0.567
151	151	0.19
152	152	0.0805
153	153	0.465
154	154	0.505
155	155	0.147
156	156	0.466
157	157	0.512
158	158	0.281
159	159	0.0502
16	16	0.278
160	160	0.266
161	161	0.301
162	162	0.886
163	163	0.0978
164	164	0.284
165	165	0.335
166	166	0.565
167	167	0.214
168	168	0.197
169	169	0.0177
17	17	0.254
18	18	0.113
19	19	0.212
2	2	0.365
20	20	0.656
21	21	0.596
22	22	0.292
23	23	0.0899
24	24	0.177
25	25	0.333
26	26	0.132
27	27	0.1
28	28	0.755
29	29	0.516
3	3	0.151
30	30	0.838
31	31	0.337
32	32	0.528
33	33	0.641
34	34	0.219
35	35	0.148
36	36	0.203
37	37	0.15
38	38	0.336
39	39	0.896
4	4	0.999
40	40	0.253
41	41	0.126
42	42	0.358
43	43	0.116
44	44	0.176
45	45	0.465
46	46	0.0862
47	47	0.188
48	48	0.239
49	49	0.0828
5	5	0.255
50	50	0.937
51	51	0.312
52	52	0.348
53	53	0.243
54	54	0.256
55	55	0.122
56	56	0.352
57	57	0.349
58	58	0.0837
59	59	0.0715
6	6	0.854
60	60	0.0424
61	61	0.314
62	62	0.0186
63	63	0.334
64	64	0.234
65	65	0.158
66	66	0.59
67	67	0.158
68	68	0.123
69	69	0.2
7	7	0.253
70	70	0.0668
71	71	0.126
72	72	0.385
73	73	0.225
74	74	0.478
75	75	0.0836
76	76	0.594
77	77	0.458
78	78	0.166
79	79	0.94
8	8	0.16
80	80	0.183
81	81	0.187
82	82	0.011
83	83	0.942
84	84	0.449
85	85	0.0181
86	86	0.13
87	87	0.486
88	88	0.994
89	89	0.422
9	9	0.424
90	90	0.0188
91	91	0.178
92	92	0.0268
93	93	0.704
94	94	0.197
95	95	0.495
96	96	0.0782
97	97	0.823
98	98	0.117
99	99	0.531

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11761

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010053 human blood - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000178,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005780
+|accession_numbers=CAGE;DRX008623;DRR009495;DRZ000920;DRZ002305;DRZ012270;DRZ013655
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!2.90!3096.52!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.55!356.83!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.40!251.46!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.30!196.38!NFE2;;chr7:28220354..28220441,-!p1@JAZF1!2.26!2605.58!JAZF1;;chr7:28220506..28220552,-!p3@JAZF1!2.17!148.48!JAZF1;;chr2:68592406..68592424,+!p1@PLEK!2.15!138.90!PLEK;;chr12:54694758..54694805,-!p1@NFE2!2.08!143.69!NFE2;;chrX:131622988..131623006,-!p8@MBNL3!2.03!105.37!MBNL3;;chr12:54694807..54694832,-!p3@NFE2!1.99!95.79!NFE2;;chrX:131622958..131622978,-!p3@MBNL3!1.98!117.35!MBNL3;;chr1:25256756..25256774,-!p1@RUNX3!1.97!170.03!RUNX3;;chr19:12998003..12998021,-!p1@KLF1!1.95!88.61!KLF1;;chr10:51585449..51585487,+!p6@NCOA4!1.95!88.61!NCOA4;;chrX:70315688..70315709,+!p1@FOXO4!1.94!193.98!FOXO4;;chr16:85932760..85932775,+!p1@IRF8!1.93!83.82!IRF8;;chr19:13213511..13213545,-!p2@LYL1!1.91!86.21!LYL1;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.63!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.80!62.27!ZNF385A;;chr10:51572339..51572376,+!p4@NCOA4!1.77!126.93!NCOA4;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.48!IKZF1;;chr1:23857325..23857416,-!p2@E2F2!1.74!62.27!E2F2;;chr17:45810594..45810608,+!p1@TBX21!1.71!50.29!TBX21;;chr7:50344289..50344323,+!p1@IKZF1!1.69!47.90!IKZF1;;chr10:51572408..51572454,+!p3@NCOA4!1.68!258.64!NCOA4;;chrX:106960180..106960197,-!p2@TSC22D3!1.67!167.64!TSC22D3;;chr11:47399947..47399961,-!p3@SPI1!1.67!45.50!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.67!45.50!SPI1;;chr1:47697965..47697991,-!p7@TAL1!1.67!45.50!TAL1;;chr19:16435625..16435682,+!p1@KLF2!1.65!1324.34!KLF2;;chr10:111985713..111985774,+!p2@MXI1!1.65!397.54!MXI1;;chr2:70142232..70142251,+!p1@MXD1!1.64!229.90!MXD1;;chr6:108881012..108881034,+!p3@FOXO3!1.58!129.32!FOXO3;;chr19:13213662..13213686,-!p1@LYL1!1.57!52.69!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.57!35.92!ZBP1;;chr11:111249993..111250006,-!p1@POU2AF1!1.54!33.53!POU2AF1;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.53!CEBPA;;chrX:106960221..106960236,-!p3@TSC22D3!1.49!81.42!TSC22D3;;chr5:133451294..133451310,+!p2@TCF7!1.47!28.74!TCF7;;chr6:391743..391759,+!p1@IRF4!1.47!28.74!IRF4;;chrX:106960285..106960299,-!p1@TSC22D3!1.44!680.13!TSC22D3;;chr6:91006518..91006570,-!p1@BACH2!1.44!59.87!BACH2;;chr10:111985777..111985788,+!p4@MXI1!1.44!26.34!MXI1;;chr4:109087445..109087463,-!p1@LEF1!1.44!26.34!LEF1;;chr1:47697881..47697910,-!p4@TAL1!1.44!26.34!TAL1;;chr10:111967345..111967422,+!p1@MXI1!1.42!397.54!MXI1;;chrX:106960249..106960260,-!p5@TSC22D3!1.41!38.32!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!1.40!23.95!SPIB;;chr7:115670804..115670825,-!p1@TFEC!1.40!23.95!TFEC;;chr3:27763807..27763822,-!p1@EOMES!1.40!23.95!EOMES;;chr7:128577972..128578047,+!p1@IRF5!1.38!35.92!IRF5;;chr12:10875658..10875708,-!p2@CSDA!1.37!50.29!CSDA;;chr6:144385698..144385742,-!p2@PLAGL1!1.36!26.34!PLAGL1;;chr5:133450365..133450444,+!p1@TCF7!1.35!95.79!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.35!57.48!AKNA;;chr20:50159198..50159299,-!p1@NFATC2!1.35!31.13!NFATC2;;chr2:68592394..68592405,+!p2@PLEK!1.35!21.55!PLEK;;chr11:47400032..47400043,-!p5@SPI1!1.35!21.55!SPI1;;chr12:54694738..54694749,-!p5@NFE2!1.35!21.55!NFE2;;chr19:13213634..13213645,-!p8@LYL1!1.35!21.55!LYL1;;chr12:10875831..10876025,-!p1@CSDA!1.34!1654.83!CSDA;;chr6:106546808..106546833,+!p3@PRDM1!1.34!26.34!PRDM1;;chrX:107018836..107018862,-!p8@TSC22D3!1.30!19.16!TSC22D3;;chr17:38020392..38020477,-!p1@IKZF3!1.30!19.16!IKZF3;;chr2:192015701..192015743,-!p1@STAT4!1.27!23.95!STAT4;;chr11:615570..615721,-!p2@IRF7!1.26!33.53!IRF7;;chr2:60780607..60780624,-!p2@BCL11A!1.25!50.29!BCL11A;;chr2:148778973..148779035,+!p3@MBD5!1.25!43.11!MBD5;;chr4:57522166..57522260,-!p2@HOPX!1.25!19.16!HOPX;;chr4:109090075..109090095,-!p2@LEF1!1.25!16.76!LEF1;;chr11:47400045..47400060,-!p6@SPI1!1.25!16.76!SPI1;;chr17:79881433..79881452,-!p6@MAFG!1.25!16.76!MAFG;;chr19:13213555..13213568,-!p5@LYL1!1.25!16.76!LYL1;;chr19:16435735..16435773,+!p4@KLF2!1.25!16.76!KLF2;;chrX:129244430..129244442,-!p5@ELF4!1.25!16.76!ELF4;;chrY:21906594..21906622,-!p1@KDM5D!1.25!16.76!KDM5D;;chr10:8096772..8096787,+!p2@GATA3!1.24!19.16!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.23!81.42!RORA;;chr3:71355163..71355209,-!p5@FOXP1!1.22!21.55!FOXP1;;chr2:60780753..60780800,-!p1@BCL11A!1.21!74.24!BCL11A;;chr3:18486354..18486377,-!p2@SATB1!1.21!19.16!SATB1;;chrX:48644984..48645005,+!p1@GATA1!1.19!14.37!GATA1;;chr7:28725715..28725727,+!p3@CREB5!1.18!16.76!CREB5;;chr2:43453734..43453751,-!p1@ZFP36L2!1.17!1446.48!ZFP36L2;;chr1:43148855..43148908,+!p4@YBX1!1.17!21.55!YBX1;;chr19:42636586..42636607,-!p1@POU2F2!1.15!35.92!POU2F2;;chr1:8484007..8484061,-!p13@RERE!1.15!16.76!RERE;;chrX:48901030..48901050,-!p4@TFE3!1.15!16.76!TFE3;;chr5:131826457..131826514,-!p1@IRF1!1.12!478.97!IRF1;;chr7:149470641..149470694,-!p1@ZNF467!1.12!55.08!ZNF467;;chr16:88752889..88752921,-!p1@SNAI3!1.12!14.37!SNAI3;;chr11:615942..615957,-!p1@IRF7!1.11!112.56!IRF7;;chr11:128392273..128392308,-!p2@ETS1!1.11!50.29!ETS1;;chr10:94449703..94449718,+!p1@HHEX!1.11!45.50!HHEX;;chr10:8096631..8096660,+!p1@GATA3!1.11!14.37!GATA3;;chr10:51585430..51585448,+!p7@NCOA4!1.11!11.97!NCOA4;;chr12:54689532..54689551,-!p4@NFE2!1.11!11.97!NFE2;;chr12:54689552..54689574,-!p6@NFE2!1.11!11.97!NFE2;;chr12:54694686..54694697,-!p8@NFE2!1.11!11.97!NFE2;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.97!IKZF1;;chr3:128212033..128212051,-!p1@GATA2!1.11!11.97!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!1.11!11.97!ATXN7;;chr3:71542651..71542683,-!p22@FOXP1!1.11!11.97!FOXP1;;chr17:79881409..79881423,-!p8@MAFG!1.11!11.97!MAFG;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.97!ZFY;;chr2:70142189..70142223,+!p2@MXD1!1.09!81.42!MXD1;;chr19:19779619..19779670,+!p1@ZNF101!1.08!31.13!ZNF101;;chr2:28618532..28618610,+!p4@FOSL2!1.08!19.16!FOSL2;;chr2:70167296..70167306,+!p3@MXD1!1.08!16.76!MXD1;;chr2:113057415..113057477,+!p3@ZC3H6!1.08!14.37!ZC3H6;;chr3:141820622..141820635,-!p5@TFDP2!1.07!19.16!TFDP2;;chr2:145277640..145277771,-!p1@ZEB2!1.05!138.90!ZEB2;;chr3:187463179..187463201,-!p2@BCL6!1.05!43.11!BCL6;;chr17:38497662..38497713,+!p4@RARA!1.05!11.97!RARA;;chr14:75745523..75745537,+!p1@FOS!1.04!1202.21!FOS;;chr11:128563948..128564003,+!p1@FLI1!1.03!117.35!FLI1;;chr2:97202480..97202499,+!p1@ARID5A!1.03!100.58!ARID5A;;chr4:38665769..38665801,+!p2@KLF3!1.02!86.21!KLF3;;chr6:91006575..91006602,-!p2@BACH2!1.02!14.37!BACH2;;chr9:117150303..117150312,-!p3@AKNA!1.02!11.97!AKNA;;chr6:106546731..106546755,+!p5@PRDM1!1.02!9.58!PRDM1;;chr6:108882175..108882186,+!p10@FOXO3!1.02!9.58!FOXO3;;chr7:137620650..137620677,-!p3@CREB3L2!1.02!9.58!CREB3L2;;chr2:231090433..231090469,+!p1@SP140!1.02!9.58!SP140;;chr2:231090471..231090504,+!p2@SP140!1.02!9.58!SP140;;chr2:68615063..68615089,+!p4@PLEK!1.02!9.58!PLEK;;chr4:57522598..57522664,-!p3@HOPX!1.02!9.58!HOPX;;chr19:54058073..54058088,+!p1@ZNF331!1.02!9.58!ZNF331;;chr1:25256439..25256476,-!p3@RUNX3!1.02!9.58!RUNX3;;chr1:26697243..26697258,-!p1@ZNF683!1.02!9.58!ZNF683;;chr20:56195525..56195556,-!p2@ZBP1!1.02!9.58!ZBP1;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.58!OLIG1;;chr17:17721569..17721574,-!p9@SREBF1!1.02!9.58!SREBF1;;chr17:38020516..38020544,-!p5@IKZF3!1.02!9.58!IKZF3;;chr12:124812308..124812313,-!p57@NCOR2!1.02!9.58!NCOR2;;chrX:131574281..131574293,-!p18@MBNL3!1.02!9.58!MBNL3;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.58!MLLT3;;chrX:129244840..129244881,-!p2@ELF4!1.01!35.92!ELF4;;chr11:130184753..130184824,-!p1@ZBTB44!1.00!124.53!ZBTB44;;chr16:79634624..79634642,-!p1@MAF!1.00!35.92!MAF;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.76!E2F2;;chr7:149470540..149470596,-!p2@ZNF467!1.00!11.97!ZNF467;;chr6:108880956..108881011,+!p1@FOXO3!0.99!59.87!FOXO3;;chr16:29817231..29817290,+!p10@MAZ!0.99!26.34!MAZ;;chr10:94449675..94449694,+!p2@HHEX!0.99!23.95!HHEX;;chr4:185395633..185395651,-!p2@IRF2!0.99!14.37!IRF2;;chr5:88178983..88179012,-!p1@MEF2C!0.98!67.06!MEF2C;;chr2:231084639..231084654,-!p2@SP110!0.98!14.37!SP110;;chr12:10865870..10865888,-!p6@CSDA!0.98!11.97!CSDA;;chr9:94186101..94186122,-!p1@NFIL3!0.97!119.74!NFIL3;;chrX:129244454..129244488,-!p1@ELF4!0.97!62.27!ELF4;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.32!SATB1;;chr4:38665703..38665713,+!p5@KLF3!0.97!16.76!KLF3;;chr6:108882364..108882391,+!p4@FOXO3!0.97!11.97!FOXO3;;chrX:107019163..107019179,-!p7@TSC22D3!0.97!9.58!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!0.95!43.11!NR4A2;;chr3:71007886..71007887,-!p8@FOXP1!0.95!26.34!FOXP1;;chr8:67525443..67525459,-!p2@MYBL1!0.95!11.97!MYBL1;;chr16:79634595..79634620,-!p2@MAF!0.94!14.37!MAF;;chr11:128392085..128392232,-!p1@ETS1!0.93!261.04!ETS1;;chr14:64970670..64970712,-!p3@ZBTB25!0.93!16.76!ZBTB25;;chr8:60031619..60031676,-!p1@TOX!0.93!16.76!TOX;;chr9:32550965..32551031,-!p4@TOPORS!0.93!11.97!TOPORS;;chr6:36355513..36355578,-!p2@ETV7!0.93!9.58!ETV7;;chr4:38665810..38665827,+!p1@KLF3!0.92!110.16!KLF3;;chr9:73028332..73028385,-!p3@KLF9!0.92!26.34!KLF9;;chr16:3313791..3313834,+!p2@ZNF263!0.92!16.76!ZNF263;;chr20:48807456..48807475,+!p3@CEBPB!0.92!14.37!CEBPB;;chr1:164528297..164528309,+!p9@PBX1!0.92!9.58!PBX1;;chr14:75746722..75746777,+!p2@FOS!0.92!9.58!FOS;;chr21:36421535..36421610,-!p2@RUNX1!0.91!26.34!RUNX1;;chr16:68119440..68119480,+!p4@NFATC3!0.91!11.97!NFATC3;;chr14:75746340..75746368,+!p3@FOS!0.91!7.18!FOS;;chr14:99737850..99737852,-!p3@BCL11B!0.91!7.18!BCL11B;;chr14:99738138..99738163,-!p1@BCL11B!0.91!7.18!BCL11B;;chr15:31619140..31619152,+!p11@KLF13!0.91!7.18!KLF13;;chr17:37934365..37934387,-!p2@IKZF3!0.91!7.18!IKZF3;;chr17:45810816..45810838,+!p2@TBX21!0.91!7.18!TBX21;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.18!LYL1;;chr1:212873084..212873137,-!p2@BATF3!0.91!7.18!BATF3;;chr1:23857128..23857141,-!p6@E2F2!0.91!7.18!E2F2;;chr1:26697189..26697205,-!p2@ZNF683!0.91!7.18!ZNF683;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.18!TAL1;;chr21:36421147..36421193,-!p10@RUNX1!0.91!7.18!RUNX1;;chr2:100759010..100759035,-!p1@AFF3!0.91!7.18!AFF3;;chr2:100759037..100759058,-!p2@AFF3!0.91!7.18!AFF3;;chr2:60781201..60781258,-!p3@BCL11A!0.91!7.18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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/blood%252c%2520adult%252c%2520pool1.CNhs11761.10053-101G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/blood%252c%2520adult%252c%2520pool1.CNhs11761.10053-101G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/blood%252c%2520adult%252c%2520pool1.CNhs11761.10053-101G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/blood%252c%2520adult%252c%2520pool1.CNhs11761.10053-101G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/blood%252c%2520adult%252c%2520pool1.CNhs11761.10053-101G8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10053-101G8
 |is_a=EFO:0002091;;FF:0010053
 |is_obsolete=
+|library_id=CNhs11761
+|library_id_phase_based=2:CNhs11761
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10053
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10053
 |name=blood, adult, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11761,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636592
@@ Line 59: / Line 78: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10053-101G8;search_select_hide=table117:FF:10053-101G8
 }}

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FF:10053-101G8: Difference between revisions

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Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0