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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004835
|accession_numbers=CAGE;DRX008215;DRR009087;DRZ000512;DRZ001897;DRZ011862;DRZ013247
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840,CL:0000784
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840,CL:0000784
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!3.37!2341.26!IRF8;;chr6:391743..391759,+!p1@IRF4!3.33!2127.57!IRF4;;chr19:50922187..50922204,+!p1@SPIB!2.53!339.61!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.31!201.52!PLEK;;chr2:100759010..100759035,-!p1@AFF3!2.01!101.84!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!2.00!293.58!BCL11A;;chr6:45390599..45390662,+!p11@RUNX2!1.95!104.22!RUNX2;;chr16:85936412..85936431,+!p2@IRF8!1.94!86.10!IRF8;;chr18:53257001..53257015,-!p5@TCF4!1.93!141.66!TCF4;;chr11:615942..615957,-!p1@IRF7!1.92!730.02!IRF7;;chr1:244214577..244214593,+!p1@ZNF238!1.92!82.52!ZNF238;;chr2:100759037..100759058,-!p2@AFF3!1.89!77.27!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!1.89!75.84!ZNF331;;chr6:45390300..45390335,+!p4@RUNX2!1.86!109.71!RUNX2;;chr7:50344251..50344288,+!p3@IKZF1!1.85!69.16!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.82!65.82!PLEK;;chr8:135614120..135614149,-!p5@ZFAT!1.81!63.68!ZFAT;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.08!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.37!IKZF1;;chr19:12721790..12721810,+!p2@ZNF791!1.69!126.64!ZNF791;;chr8:135613849..135613883,-!p7@ZFAT!1.69!47.94!ZFAT;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.84!NR4A3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.36!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.64!IKZF1;;chr18:53253297..53253322,-!p30@TCF4!1.64!42.93!TCF4;;chr1:244214655..244214666,+!p7@ZNF238!1.64!42.69!ZNF238;;chr2:60781201..60781258,-!p3@BCL11A!1.63!41.97!BCL11A;;chr6:45390269..45390298,+!p5@RUNX2!1.62!65.82!RUNX2;;chr5:142782823..142782854,-!p3@NR3C1!1.62!57.00!NR3C1;;chr8:135614084..135614119,-!p4@ZFAT!1.60!38.87!ZFAT;;chr18:53255839..53255854,-!p13@TCF4!1.58!43.64!TCF4;;chr15:31619140..31619152,+!p11@KLF13!1.51!31.24!KLF13;;chr2:145277640..145277771,-!p1@ZEB2!1.48!375.38!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.47!55.33!NFKBID;;chr2:60780753..60780800,-!p1@BCL11A!1.46!133.08!BCL11A;;chr18:52989565..52989623,-!p9@TCF4!1.46!35.30!TCF4;;chr12:111537227..111537239,+!p7@CUX2!1.45!27.19!CUX2;;chr1:244214611..244214624,+!p4@ZNF238!1.45!26.95!ZNF238;;chr13:72441315..72441454,-!p1@DACH1!1.44!52.71!DACH1;;chr5:88178983..88179012,-!p1@MEF2C!1.41!182.45!MEF2C;;chr2:157189180..157189290,-!p1@NR4A2!1.40!120.68!NR4A2;;chr1:92949331..92949377,-!p2@GFI1!1.40!23.85!GFI1;;chr5:142814241..142814278,-!p12@NR3C1!1.39!23.61!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.38!140.47!CSRNP1;;chr9:102584241..102584261,+!p4@NR4A3!1.38!35.54!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!1.37!22.66!NFKB2;;chr1:156470515..156470542,-!p2@MEF2D!1.36!111.38!MEF2D;;chr10:35484053..35484076,+!p1@CREM!1.36!53.66!CREM;;chr6:135502501..135502546,+!p1@MYB!1.35!25.52!MYB;;chr1:40367530..40367597,-!p1@MYCL1!1.33!36.97!MYCL1;;chr1:157108728..157108744,-!p5@ETV3!1.32!20.03!ETV3;;chr6:12009042..12009092,+!p6@HIVEP1!1.30!24.56!HIVEP1;;chr6:45390343..45390388,+!p10@RUNX2!1.29!24.80!RUNX2;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.65!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.27!17.65!ZBED1;;chr9:117150254..117150271,-!p1@AKNA!1.26!46.98!AKNA;;chr18:52989031..52989079,-!p2@TCF4!1.26!40.07!TCF4;;chr7:104654690..104654704,+!p2@MLL5!1.26!33.87!MLL5;;chr2:60778035..60778060,-!p4@BCL11A!1.26!20.51!BCL11A;;chr2:60780730..60780742,-!p5@BCL11A!1.25!16.69!BCL11A;;chr12:54778471..54778528,-!p1@ZNF385A!1.25!16.69!ZNF385A;;chr18:53255415..53255491,-!p1@TCF4!1.24!137.37!TCF4;;chr14:74226961..74227020,-!p1@C14orf43!1.23!102.55!C14orf43;;chr15:31619200..31619211,+!p12@KLF13!1.23!17.17!KLF13;;chr2:61108695..61108753,+!p1@REL!1.21!102.31!REL;;chr15:74833584..74833626,+!p1@ARID3B!1.21!34.82!ARID3B;;chr6:45390442..45390479,+!p8@RUNX2!1.21!22.90!RUNX2;;chr6:44233252..44233296,-!p1@NFKBIE!1.20!143.09!NFKBIE;;chr18:53254566..53254567,-!p8@TCF4!1.20!24.33!TCF4;;chr18:53253077..53253100,-!p46@TCF4!1.19!14.55!TCF4;;chr2:100758991..100759009,-!p3@AFF3!1.19!14.55!AFF3;;chr1:40367668..40367684,-!p2@MYCL1!1.19!14.55!MYCL1;;chr8:123793988..123794016,+!p1@ZHX2!1.18!25.04!ZHX2;;chr8:135613895..135613921,-!p8@ZFAT!1.18!14.31!ZFAT;;chrX:106960180..106960197,-!p2@TSC22D3!1.17!52.23!TSC22D3;;chr9:102584159..102584174,+!p2@NR4A3!1.17!25.04!NR4A3;;chr2:97202480..97202499,+!p1@ARID5A!1.16!134.99!ARID5A;;chr6:45390025..45390076,+!p2@RUNX2!1.16!32.20!RUNX2;;chr18:53253323..53253359,-!p19@TCF4!1.16!13.59!TCF4;;chr6:135502408..135502459,+!p2@MYB!1.15!15.26!MYB;;chr15:31619119..31619131,+!p14@KLF13!1.15!14.55!KLF13;;chr1:92950138..92950159,-!p4@GFI1!1.15!13.12!GFI1;;chr6:12008986..12009016,+!p3@HIVEP1!1.14!39.83!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.14!24.33!RUNX3;;chr7:104654718..104654741,+!p3@MLL5!1.14!18.84!MLL5;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.65!STAT4;;chr12:11802753..11802834,+!p2@ETV6!1.13!60.58!ETV6;;chrX:129244430..129244442,-!p5@ELF4!1.13!12.64!ELF4;;chr13:72441074..72441172,-!p2@DACH1!1.12!12.16!DACH1;;chr19:45971246..45971265,+!p1@FOSB!1.11!220.84!FOSB;;chr4:106068026..106068084,+!p1@TET2!1.11!107.80!TET2;;chr19:50432132..50432217,+!p2@ATF5!1.11!14.07!ATF5;;chr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|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!3.37!2341.26!IRF8;;chr6:391743..391759,+!p1@IRF4!3.33!2127.57!IRF4;;chr19:50922187..50922204,+!p1@SPIB!2.53!339.61!SPIB;;chr2:68592406..68592424,+!p1@PLEK!2.31!201.52!PLEK;;chr2:100759010..100759035,-!p1@AFF3!2.01!101.84!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!2.00!293.58!BCL11A;;chr6:45390599..45390662,+!p11@RUNX2!1.95!104.22!RUNX2;;chr16:85936412..85936431,+!p2@IRF8!1.94!86.10!IRF8;;chr18:53257001..53257015,-!p5@TCF4!1.93!141.66!TCF4;;chr11:615942..615957,-!p1@IRF7!1.92!730.02!IRF7;;chr1:244214577..244214593,+!p1@ZNF238!1.92!82.52!ZNF238;;chr2:100759037..100759058,-!p2@AFF3!1.89!77.27!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!1.89!75.84!ZNF331;;chr6:45390300..45390335,+!p4@RUNX2!1.86!109.71!RUNX2;;chr7:50344251..50344288,+!p3@IKZF1!1.85!69.16!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.82!65.82!PLEK;;chr8:135614120..135614149,-!p5@ZFAT!1.81!63.68!ZFAT;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.08!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.37!IKZF1;;chr19:12721790..12721810,+!p2@ZNF791!1.69!126.64!ZNF791;;chr8:135613849..135613883,-!p7@ZFAT!1.69!47.94!ZFAT;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.84!NR4A3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.36!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.64!IKZF1;;chr18:53253297..53253322,-!p30@TCF4!1.64!42.93!TCF4;;chr1:244214655..244214666,+!p7@ZNF238!1.64!42.69!ZNF238;;chr2:60781201..60781258,-!p3@BCL11A!1.63!41.97!BCL11A;;chr6:45390269..45390298,+!p5@RUNX2!1.62!65.82!RUNX2;;chr5:142782823..142782854,-!p3@NR3C1!1.62!57.00!NR3C1;;chr8:135614084..135614119,-!p4@ZFAT!1.60!38.87!ZFAT;;chr18:53255839..53255854,-!p13@TCF4!1.58!43.64!TCF4;;chr15:31619140..31619152,+!p11@KLF13!1.51!31.24!KLF13;;chr2:145277640..145277771,-!p1@ZEB2!1.48!375.38!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.47!55.33!NFKBID;;chr2:60780753..60780800,-!p1@BCL11A!1.46!133.08!BCL11A;;chr18:52989565..52989623,-!p9@TCF4!1.46!35.30!TCF4;;chr12:111537227..111537239,+!p7@CUX2!1.45!27.19!CUX2;;chr1:244214611..244214624,+!p4@ZNF238!1.45!26.95!ZNF238;;chr13:72441315..72441454,-!p1@DACH1!1.44!52.71!DACH1;;chr5:88178983..88179012,-!p1@MEF2C!1.41!182.45!MEF2C;;chr2:157189180..157189290,-!p1@NR4A2!1.40!120.68!NR4A2;;chr1:92949331..92949377,-!p2@GFI1!1.40!23.85!GFI1;;chr5:142814241..142814278,-!p12@NR3C1!1.39!23.61!NR3C1;;chr3:39195075..39195088,-!p1@CSRNP1!1.38!140.47!CSRNP1;;chr9:102584241..102584261,+!p4@NR4A3!1.38!35.54!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!1.37!22.66!NFKB2;;chr1:156470515..156470542,-!p2@MEF2D!1.36!111.38!MEF2D;;chr10:35484053..35484076,+!p1@CREM!1.36!53.66!CREM;;chr6:135502501..135502546,+!p1@MYB!1.35!25.52!MYB;;chr1:40367530..40367597,-!p1@MYCL1!1.33!36.97!MYCL1;;chr1:157108728..157108744,-!p5@ETV3!1.32!20.03!ETV3;;chr6:12009042..12009092,+!p6@HIVEP1!1.30!24.56!HIVEP1;;chr6:45390343..45390388,+!p10@RUNX2!1.29!24.80!RUNX2;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.65!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.27!17.65!ZBED1;;chr9:117150254..117150271,-!p1@AKNA!1.26!46.98!AKNA;;chr18:52989031..52989079,-!p2@TCF4!1.26!40.07!TCF4;;chr7:104654690..104654704,+!p2@MLL5!1.26!33.87!MLL5;;chr2:60778035..60778060,-!p4@BCL11A!1.26!20.51!BCL11A;;chr2:60780730..60780742,-!p5@BCL11A!1.25!16.69!BCL11A;;chr12:54778471..54778528,-!p1@ZNF385A!1.25!16.69!ZNF385A;;chr18:53255415..53255491,-!p1@TCF4!1.24!137.37!TCF4;;chr14:74226961..74227020,-!p1@C14orf43!1.23!102.55!C14orf43;;chr15:31619200..31619211,+!p12@KLF13!1.23!17.17!KLF13;;chr2:61108695..61108753,+!p1@REL!1.21!102.31!REL;;chr15:74833584..74833626,+!p1@ARID3B!1.21!34.82!ARID3B;;chr6:45390442..45390479,+!p8@RUNX2!1.21!22.90!RUNX2;;chr6:44233252..44233296,-!p1@NFKBIE!1.20!143.09!NFKBIE;;chr18:53254566..53254567,-!p8@TCF4!1.20!24.33!TCF4;;chr18:53253077..53253100,-!p46@TCF4!1.19!14.55!TCF4;;chr2:100758991..100759009,-!p3@AFF3!1.19!14.55!AFF3;;chr1:40367668..40367684,-!p2@MYCL1!1.19!14.55!MYCL1;;chr8:123793988..123794016,+!p1@ZHX2!1.18!25.04!ZHX2;;chr8:135613895..135613921,-!p8@ZFAT!1.18!14.31!ZFAT;;chrX:106960180..106960197,-!p2@TSC22D3!1.17!52.23!TSC22D3;;chr9:102584159..102584174,+!p2@NR4A3!1.17!25.04!NR4A3;;chr2:97202480..97202499,+!p1@ARID5A!1.16!134.99!ARID5A;;chr6:45390025..45390076,+!p2@RUNX2!1.16!32.20!RUNX2;;chr18:53253323..53253359,-!p19@TCF4!1.16!13.59!TCF4;;chr6:135502408..135502459,+!p2@MYB!1.15!15.26!MYB;;chr15:31619119..31619131,+!p14@KLF13!1.15!14.55!KLF13;;chr1:92950138..92950159,-!p4@GFI1!1.15!13.12!GFI1;;chr6:12008986..12009016,+!p3@HIVEP1!1.14!39.83!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.14!24.33!RUNX3;;chr7:104654718..104654741,+!p3@MLL5!1.14!18.84!MLL5;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.65!STAT4;;chr12:11802753..11802834,+!p2@ETV6!1.13!60.58!ETV6;;chrX:129244430..129244442,-!p5@ELF4!1.13!12.64!ELF4;;chr13:72441074..72441172,-!p2@DACH1!1.12!12.16!DACH1;;chr19:45971246..45971265,+!p1@FOSB!1.11!220.84!FOSB;;chr4:106068026..106068084,+!p1@TET2!1.11!107.80!TET2;;chr19:50432132..50432217,+!p2@ATF5!1.11!14.07!ATF5;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000784;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.ctss.bed.gz
|id=FF:11228-116C4
|id=FF:11228-116C4
|is_a=EFO:0002091;;FF:0000044;;FF:0000045
|is_a=EFO:0002091;;FF:0000044;;FF:0000045
|is_obsolete=
|is_obsolete=
|library_id=CNhs10857
|library_id_phase_based=2:CNhs10857
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11228
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11228
|name=Dendritic Cells - plasmacytoid, donor1
|name=Dendritic Cells - plasmacytoid, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10857,LSID702,release008,COMPLETED
|profile_hcage=CNhs10857,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 79:
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|sample_category=primary cells
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|sample_cell_line=
Line 81: Line 101:
|top_motifs=NANOG{mouse}:2.59293666462;AIRE:2.11649186387;DMAP1_NCOR{1,2}_SMARC:1.98223898767;CREB1:1.86680356647;SPI1:1.83806444278;NFKB1_REL_RELA:1.83101082671;ATF5_CREB3:1.7227099311;LMO2:1.65446974895;FOXD3:1.64999042637;PAX2:1.62271947354;RUNX1..3:1.61654226052;SPIB:1.52165480371;NFIL3:1.4321359863;TGIF1:1.38557910372;RFX2..5_RFXANK_RFXAP:1.36680007886;ELF1,2,4:1.35569803058;ETS1,2:1.32741005656;ATF4:1.31369779961;FOXN1:1.30185852288;PAX6:1.26052997707;EN1,2:1.18073867565;PAX3,7:1.0887795343;FOX{F1,F2,J1}:0.9941953554;NANOG:0.946786754164;FOXP1:0.934836570403;BREu{core}:0.893076492554;BPTF:0.887469108931;MYFfamily:0.833542923053;FOXQ1:0.815475296076;IRF1,2:0.787104938434;FOXL1:0.773870010768;NHLH1,2:0.746103898795;HMX1:0.735707261405;FOXP3:0.718978216789;RORA:0.712380032544;HIF1A:0.704020910943;TLX2:0.702293455124;CRX:0.692494711833;ZBTB16:0.673628163211;POU2F1..3:0.673382068177;MYB:0.64453026773;ATF6:0.630285616616;NKX6-1,2:0.599275008577;FOXO1,3,4:0.531027354386;MYOD1:0.527813038006;PDX1:0.460197521403;SREBF1,2:0.450776927804;HOXA9_MEIS1:0.439889121369;IRF7:0.425248040245;RXRA_VDR{dimer}:0.391444566259;BACH2:0.389598237525;OCT4_SOX2{dimer}:0.387404634733;FOS_FOS{B,L1}_JUN{B,D}:0.3870731574;FOXA2:0.376216028299;ZEB1:0.372997103145;HBP1_HMGB_SSRP1_UBTF:0.368837072146;ELK1,4_GABP{A,B1}:0.331487293754;FOX{D1,D2}:0.294614906206;HMGA1,2:0.278842588491;FOSL2:0.269129502797;NR6A1:0.243522590263;SMAD1..7,9:0.229218829213;CDX1,2,4:0.216474726908;NFE2:0.188971110413;IKZF2:0.188220844099;MAFB:0.172089250482;XBP1:0.151106551876;MEF2{A,B,C,D}:0.142590119228;PAX4:0.141118908807;T:0.118308317972;ATF2:0.116152146898;EP300:0.0953385921783;POU5F1:0.0948109145732;JUN:0.0919721877687;TFAP4:0.0656294285041;CEBPA,B_DDIT3:0.0503868739358;HLF:0.0474202310157;PITX1..3:0.0439912489928;ZNF148:0.0419512262487;ALX1:0.0279708131785;FOX{I1,J2}:0.00508496125042;NKX2-2,8:-0.000379986178322;CUX2:-0.0302221295155;SNAI1..3:-0.0510660492921;TOPORS:-0.0545255328624;SOX5:-0.0868325775202;ESR1:-0.0950718206986;EVI1:-0.0963205559694;EGR1..3:-0.100839049806;CDC5L:-0.13044401703;ESRRA:-0.141865771721;GATA4:-0.147146399873;STAT5{A,B}:-0.160233214037;GATA6:-0.17822760586;TAL1_TCF{3,4,12}:-0.181424667771;RBPJ:-0.193390958645;TEF:-0.210379618961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.219281682176;HAND1,2:-0.24152114603;NR5A1,2:-0.242361637043;SOX2:-0.251875300332;ZNF238:-0.252192568255;NFATC1..3:-0.274747785422;TFAP2{A,C}:-0.291751012725;ALX4:-0.301291602195;STAT1,3:-0.331826560545;ZFP161:-0.335214474273;GLI1..3:-0.33677935804;SOX{8,9,10}:-0.336869393088;NFY{A,B,C}:-0.345972602063;HNF4A_NR2F1,2:-0.366085373516;PRRX1,2:-0.388600303451;POU1F1:-0.389586747843;DBP:-0.393039268641;ARID5B:-0.428493625059;YY1:-0.443471265477;HNF1A:-0.447448818961;PAX8:-0.463940143183;MED-1{core}:-0.472956295865;NFE2L2:-0.473675785623;STAT2,4,6:-0.500451410462;bHLH_family:-0.514406783646;NKX2-3_NKX2-5:-0.526622542207;POU3F1..4:-0.549566684004;LHX3,4:-0.550515834317;E2F1..5:-0.568200878953;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.590605796192;PPARG:-0.60554860216;NKX3-1:-0.613205631647;AR:-0.615564091535;SOX17:-0.623925925502;RXR{A,B,G}:-0.64235019668;AHR_ARNT_ARNT2:-0.644586975618;REST:-0.645444204811;MZF1:-0.654589809414;NRF1:-0.656641122792;HOX{A5,B5}:-0.679759693179;PATZ1:-0.709514308888;ZNF384:-0.724438031122;SRF:-0.728580187004;ZNF143:-0.745963844023;PRDM1:-0.772055924083;SP1:-0.773474472092;MTE{core}:-0.783108060107;HOX{A4,D4}:-0.784269499883;HSF1,2:-0.7988099112;HES1:-0.801240167424;TFCP2:-0.817628344983;POU6F1:-0.855447753886;HOX{A6,A7,B6,B7}:-0.871789313679;TBP:-0.875765372326;MAZ:-0.88191355337;RREB1:-0.911574219091;LEF1_TCF7_TCF7L1,2:-0.912562284868;ZBTB6:-0.917470090182;RFX1:-0.919876324234;MYBL2:-0.936983923983;NR1H4:-0.942338344283;NFE2L1:-0.961161158424;HIC1:-0.979751146507;SPZ1:-1.02400253658;NFIX:-1.03896718381;TFAP2B:-1.05859383371;MTF1:-1.09096982483;NKX3-2:-1.09586822691;GTF2A1,2:-1.09728135771;TP53:-1.11499253401;PAX5:-1.18595246675;NKX2-1,4:-1.19239194166;ONECUT1,2:-1.23469210373;NR3C1:-1.23902541769;GZF1:-1.24163043376;VSX1,2:-1.25415652664;ADNP_IRX_SIX_ZHX:-1.26287663915;GFI1:-1.29298612795;TEAD1:-1.42271706795;GCM1,2:-1.42323150152;ZNF423:-1.43454428518;UFEwm:-1.45931027949;TBX4,5:-1.48923312635;TFDP1:-1.49025316483;EBF1:-1.50109371565;GFI1B:-1.55699280433;XCPE1{core}:-1.56131407293;GTF2I:-1.56995988281;PBX1:-1.6319686754;ZIC1..3:-1.6482229389;IKZF1:-1.66426045745;FOXM1:-1.70335368566;KLF4:-1.96706258211;TLX1..3_NFIC{dimer}:-2.09613758378;PAX1,9:-2.39827189994
|top_motifs=NANOG{mouse}:2.59293666462;AIRE:2.11649186387;DMAP1_NCOR{1,2}_SMARC:1.98223898767;CREB1:1.86680356647;SPI1:1.83806444278;NFKB1_REL_RELA:1.83101082671;ATF5_CREB3:1.7227099311;LMO2:1.65446974895;FOXD3:1.64999042637;PAX2:1.62271947354;RUNX1..3:1.61654226052;SPIB:1.52165480371;NFIL3:1.4321359863;TGIF1:1.38557910372;RFX2..5_RFXANK_RFXAP:1.36680007886;ELF1,2,4:1.35569803058;ETS1,2:1.32741005656;ATF4:1.31369779961;FOXN1:1.30185852288;PAX6:1.26052997707;EN1,2:1.18073867565;PAX3,7:1.0887795343;FOX{F1,F2,J1}:0.9941953554;NANOG:0.946786754164;FOXP1:0.934836570403;BREu{core}:0.893076492554;BPTF:0.887469108931;MYFfamily:0.833542923053;FOXQ1:0.815475296076;IRF1,2:0.787104938434;FOXL1:0.773870010768;NHLH1,2:0.746103898795;HMX1:0.735707261405;FOXP3:0.718978216789;RORA:0.712380032544;HIF1A:0.704020910943;TLX2:0.702293455124;CRX:0.692494711833;ZBTB16:0.673628163211;POU2F1..3:0.673382068177;MYB:0.64453026773;ATF6:0.630285616616;NKX6-1,2:0.599275008577;FOXO1,3,4:0.531027354386;MYOD1:0.527813038006;PDX1:0.460197521403;SREBF1,2:0.450776927804;HOXA9_MEIS1:0.439889121369;IRF7:0.425248040245;RXRA_VDR{dimer}:0.391444566259;BACH2:0.389598237525;OCT4_SOX2{dimer}:0.387404634733;FOS_FOS{B,L1}_JUN{B,D}:0.3870731574;FOXA2:0.376216028299;ZEB1:0.372997103145;HBP1_HMGB_SSRP1_UBTF:0.368837072146;ELK1,4_GABP{A,B1}:0.331487293754;FOX{D1,D2}:0.294614906206;HMGA1,2:0.278842588491;FOSL2:0.269129502797;NR6A1:0.243522590263;SMAD1..7,9:0.229218829213;CDX1,2,4:0.216474726908;NFE2:0.188971110413;IKZF2:0.188220844099;MAFB:0.172089250482;XBP1:0.151106551876;MEF2{A,B,C,D}:0.142590119228;PAX4:0.141118908807;T:0.118308317972;ATF2:0.116152146898;EP300:0.0953385921783;POU5F1:0.0948109145732;JUN:0.0919721877687;TFAP4:0.0656294285041;CEBPA,B_DDIT3:0.0503868739358;HLF:0.0474202310157;PITX1..3:0.0439912489928;ZNF148:0.0419512262487;ALX1:0.0279708131785;FOX{I1,J2}:0.00508496125042;NKX2-2,8:-0.000379986178322;CUX2:-0.0302221295155;SNAI1..3:-0.0510660492921;TOPORS:-0.0545255328624;SOX5:-0.0868325775202;ESR1:-0.0950718206986;EVI1:-0.0963205559694;EGR1..3:-0.100839049806;CDC5L:-0.13044401703;ESRRA:-0.141865771721;GATA4:-0.147146399873;STAT5{A,B}:-0.160233214037;GATA6:-0.17822760586;TAL1_TCF{3,4,12}:-0.181424667771;RBPJ:-0.193390958645;TEF:-0.210379618961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.219281682176;HAND1,2:-0.24152114603;NR5A1,2:-0.242361637043;SOX2:-0.251875300332;ZNF238:-0.252192568255;NFATC1..3:-0.274747785422;TFAP2{A,C}:-0.291751012725;ALX4:-0.301291602195;STAT1,3:-0.331826560545;ZFP161:-0.335214474273;GLI1..3:-0.33677935804;SOX{8,9,10}:-0.336869393088;NFY{A,B,C}:-0.345972602063;HNF4A_NR2F1,2:-0.366085373516;PRRX1,2:-0.388600303451;POU1F1:-0.389586747843;DBP:-0.393039268641;ARID5B:-0.428493625059;YY1:-0.443471265477;HNF1A:-0.447448818961;PAX8:-0.463940143183;MED-1{core}:-0.472956295865;NFE2L2:-0.473675785623;STAT2,4,6:-0.500451410462;bHLH_family:-0.514406783646;NKX2-3_NKX2-5:-0.526622542207;POU3F1..4:-0.549566684004;LHX3,4:-0.550515834317;E2F1..5:-0.568200878953;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.590605796192;PPARG:-0.60554860216;NKX3-1:-0.613205631647;AR:-0.615564091535;SOX17:-0.623925925502;RXR{A,B,G}:-0.64235019668;AHR_ARNT_ARNT2:-0.644586975618;REST:-0.645444204811;MZF1:-0.654589809414;NRF1:-0.656641122792;HOX{A5,B5}:-0.679759693179;PATZ1:-0.709514308888;ZNF384:-0.724438031122;SRF:-0.728580187004;ZNF143:-0.745963844023;PRDM1:-0.772055924083;SP1:-0.773474472092;MTE{core}:-0.783108060107;HOX{A4,D4}:-0.784269499883;HSF1,2:-0.7988099112;HES1:-0.801240167424;TFCP2:-0.817628344983;POU6F1:-0.855447753886;HOX{A6,A7,B6,B7}:-0.871789313679;TBP:-0.875765372326;MAZ:-0.88191355337;RREB1:-0.911574219091;LEF1_TCF7_TCF7L1,2:-0.912562284868;ZBTB6:-0.917470090182;RFX1:-0.919876324234;MYBL2:-0.936983923983;NR1H4:-0.942338344283;NFE2L1:-0.961161158424;HIC1:-0.979751146507;SPZ1:-1.02400253658;NFIX:-1.03896718381;TFAP2B:-1.05859383371;MTF1:-1.09096982483;NKX3-2:-1.09586822691;GTF2A1,2:-1.09728135771;TP53:-1.11499253401;PAX5:-1.18595246675;NKX2-1,4:-1.19239194166;ONECUT1,2:-1.23469210373;NR3C1:-1.23902541769;GZF1:-1.24163043376;VSX1,2:-1.25415652664;ADNP_IRX_SIX_ZHX:-1.26287663915;GFI1:-1.29298612795;TEAD1:-1.42271706795;GCM1,2:-1.42323150152;ZNF423:-1.43454428518;UFEwm:-1.45931027949;TBX4,5:-1.48923312635;TFDP1:-1.49025316483;EBF1:-1.50109371565;GFI1B:-1.55699280433;XCPE1{core}:-1.56131407293;GTF2I:-1.56995988281;PBX1:-1.6319686754;ZIC1..3:-1.6482229389;IKZF1:-1.66426045745;FOXM1:-1.70335368566;KLF4:-1.96706258211;TLX1..3_NFIC{dimer}:-2.09613758378;PAX1,9:-2.39827189994
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11228-116C4;search_select_hide=table117:FF:11228-116C4
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Dendritic Cells - plasmacytoid, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10857
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage22 years old adult
sexfemale
age22
cell typedendritic cell, plasmacytoid
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberPDC737
catalog number3H100-72-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004835
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10857 CAGE DRX008215 DRR009087
Accession ID Hg19

Library idBAMCTSS
CNhs10857 DRZ000512 DRZ001897
Accession ID Hg38

Library idBAMCTSS
CNhs10857 DRZ011862 DRZ013247
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.288
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.234
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.251
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0929
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.262
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.169
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.387
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0929
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.353
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.587
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0929
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0929
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.234
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0929
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.247
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.528
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.251
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.193
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.386
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0929
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0374
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0929
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0221
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.234
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.614
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.362
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0929
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.169
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.197
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0929
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.169
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature1.139
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0929
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.485
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.0929
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.169
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0929
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10857

Jaspar motifP-value
MA0002.22.87346e-8
MA0003.10.933
MA0004.10.332
MA0006.10.575
MA0007.10.73
MA0009.10.109
MA0014.10.794
MA0017.10.887
MA0018.20.00319
MA0019.10.542
MA0024.10.077
MA0025.10.0798
MA0027.10.433
MA0028.10.257
MA0029.10.706
MA0030.10.441
MA0031.10.191
MA0035.20.523
MA0038.10.148
MA0039.20.575
MA0040.10.948
MA0041.10.293
MA0042.10.793
MA0043.14.07063e-4
MA0046.10.142
MA0047.20.624
MA0048.10.00561
MA0050.11.65798e-4
MA0051.10.0244
MA0052.10.182
MA0055.13.39387e-4
MA0057.10.278
MA0058.10.205
MA0059.10.437
MA0060.10.0433
MA0061.15.27558e-14
MA0062.27.95191e-8
MA0065.20.398
MA0066.10.376
MA0067.17.84337e-4
MA0068.10.133
MA0069.10.804
MA0070.10.0356
MA0071.10.663
MA0072.10.502
MA0073.10.349
MA0074.10.621
MA0076.10.043
MA0077.10.315
MA0078.10.939
MA0079.20.977
MA0080.22.53396e-13
MA0081.11.4981e-5
MA0083.10.216
MA0084.10.736
MA0087.10.748
MA0088.10.985
MA0090.19.6346e-4
MA0091.10.0817
MA0092.10.933
MA0093.10.404
MA0099.21.02178e-6
MA0100.10.884
MA0101.11.44128e-14
MA0102.22.27259e-4
MA0103.10.095
MA0104.20.0791
MA0105.13.9674e-10
MA0106.10.075
MA0107.15.67079e-16
MA0108.22.0596e-4
MA0111.10.227
MA0112.20.265
MA0113.10.978
MA0114.10.618
MA0115.10.0719
MA0116.10.00318
MA0117.10.0806
MA0119.10.828
MA0122.10.806
MA0124.10.9
MA0125.10.231
MA0131.10.676
MA0135.10.19
MA0136.11.09579e-14
MA0137.20.491
MA0138.20.404
MA0139.10.735
MA0140.10.643
MA0141.10.838
MA0142.10.823
MA0143.10.941
MA0144.10.976
MA0145.10.26
MA0146.10.252
MA0147.10.109
MA0148.10.338
MA0149.10.707
MA0150.16.14971e-5
MA0152.10.0775
MA0153.13.87981e-4
MA0154.10.00836
MA0155.10.466
MA0156.11.42717e-11
MA0157.10.239
MA0159.10.396
MA0160.10.875
MA0162.10.56
MA0163.11.89354e-4
MA0164.10.665
MA0258.10.141
MA0259.10.484



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10857

Novel motifP-value
10.322
100.0136
1000.954
1010.493
1020.557
1030.228
1040.366
1050.342
1060.00918
1070.778
1080.17
1090.191
110.278
1100.697
1110.135
1120.763
1130.582
1140.121
1150.505
1160.877
1170.00627
1180.239
1190.173
120.414
1200.892
1210.423
1220.186
1230.00319
1240.207
1250.0627
1260.483
1270.603
1280.13
1290.956
130.066
1300.949
1310.969
1320.0561
1330.341
1340.455
1350.916
1360.547
1370.00166
1380.642
1390.0381
140.192
1400.996
1410.421
1420.348
1430.011
1440.817
1450.754
1460.776
1470.148
1480.024
1490.499
150.0723
1500.586
1510.274
1520.994
1530.454
1540.458
1550.0703
1560.921
1570.745
1580.163
1590.231
160.738
1600.681
1610.744
1620.647
1630.672
1640.233
1650.215
1660.331
1670.177
1680.734
1690.951
170.915
180.636
190.381
20.491
200.911
210.847
220.999
230.468
240.371
250.198
260.349
270.548
280.408
290.0202
30.133
300.141
310.736
320.042
330.206
340.966
350.0475
360.128
370.095
380.528
390.722
40.421
400.674
410.05
420.0813
430.104
440.978
450.533
460.379
470.551
480.687
490.105
50.476
500.753
510.382
520.586
530.32
540.83
550.604
560.513
570.586
580.0526
590.888
60.563
600.19
610.0739
620.0277
630.65
640.463
650.671
660.419
670.291
680.367
690.718
70.175
700.0282
710.0631
720.229
730.553
740.252
750.0773
760.324
770.719
780.0362
790.937
80.753
800.121
810.315
820.242
830.284
840.033
850.221
860.0643
870.121
880.45
890.473
90.692
900.0691
910.842
920.526
930.508
940.0937
950.153
960.923
970.936
980.228
996.13711e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10857


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
0000784 (plasmacytoid dendritic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
0000045 (human plasmacytoid dendritic cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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