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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005349
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005349
|accession_numbers=CAGE;DRX008476;DRR009348;DRZ000773;DRZ002158;DRZ012123;DRZ013508
|accession_numbers_RNASeq=sRNA-Seq;DRX037146;DRR041512;DRZ007154
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.61!69.60!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.45!48.41!TBX18;;chr6:134210243..134210257,+!p1@TCF21!1.44!26.58!TCF21;;chr12:81110684..81110700,+!p1@MYF5!1.36!22.15!MYF5;;chr16:86600426..86600441,+!p1@FOXC2!1.28!43.66!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.27!80.04!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.77!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.24!16.45!ZIC1;;chr14:61116183..61116208,-!p1@SIX1!1.23!60.11!SIX1;;chr1:40105299..40105326,-!p1@HEYL!1.22!15.50!HEYL;;chr5:158526917..158526932,-!p1@EBF1!1.21!37.33!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!12.97!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!1.11!114.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.10!61.06!HIF1A;;chr3:147139053..147139112,+!p5@ZIC1!1.06!10.44!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!1.05!10.12!ZIC1;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.94!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.34!EBF1;;chr15:80843484..80843499,+!p5@ARNT2!1.01!9.18!ARNT2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.19!CREB3L1;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.35!C11orf9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.86!GLIS1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.83!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.50!CREB3L1;;chr15:96869255..96869291,+!p6@NR2F2!0.92!13.60!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.91!31.32!ZFHX4;;chr15:96874145..96874166,+!p7@NR2F2!0.90!13.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.64!NR2F1;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.91!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!0.84!8.23!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.83!895.35!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.33!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.69!ALX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.69!RUNX1T1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.45!MLLT11;;chr7:137686763..137686784,-!p5@CREB3L2!0.82!10.12!CREB3L2;;chr4:81118647..81118666,+!p1@PRDM8!0.82!7.59!PRDM8;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.37!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.12!ZNF804A;;chr9:16870710..16870763,-!p1@BNC2!0.81!9.81!BNC2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!7.91!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!0.80!5.38!SIX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.78!21.51!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.78!5.69!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.06!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.78!5.06!FOXS1;;chr7:17338266..17338282,+!p1@AHR!0.77!57.58!AHR;;chr7:113726357..113726443,+!p1@FOXP2!0.77!8.86!FOXP2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.82!TBX2;;chr8:25902876..25902936,-!p1@EBF2!0.76!4.75!EBF2;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.18!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.73!4.43!EBF3;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.43!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.01!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.69!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.88!FOXD1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.96!PAWR;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.75!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.61!AEBP1;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.90!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!0.69!6.96!TCF12;;chr15:96874012..96874042,+!p2@NR2F2!0.68!38.91!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.64!MLLT11;;chr2:114036488..114036504,-!p1@PAX8!0.68!3.80!PAX8;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.80!PKNOX2;;chr12:66218923..66218934,+!p14@HMGA2!0.68!3.80!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.68!3.80!EBF1;;chr8:77593448..77593471,+!p2@ZFHX4!0.68!3.80!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.01!HMGA2;;chr15:96869222..96869251,+!p18@NR2F2!0.67!4.43!NR2F2;;chr21:30671690..30671762,+!p2@BACH1!0.66!13.60!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.73!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.65!5.38!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr12:85674018..85674039,+!p3@ALX1!0.65!3.48!ALX1;;chr3:147127489..147127503,+!p11@ZIC1!0.65!3.48!ZIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.64!24.99!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!0.64!10.44!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.18!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.20!ARID5B;;chr1:170633262..170633285,+!p3@PRRX1!0.63!3.80!PRRX1;;chr15:96873921..96873946,+!p1@NR2F2!0.62!106.62!NR2F2;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.59!SMARCD3;;chr17:59477275..59477286,+!p3@TBX2!0.62!4.43!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.62!3.16!NR2F2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.62!3.16!RUNX1T1;;chr2:5832508..5832524,+!p1@SOX11!0.62!3.16!SOX11;;chr5:321810..321877,+!p1@AHRR!0.61!11.39!AHRR;;chr15:96869292..96869320,+!p15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|expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.61!69.60!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.45!48.41!TBX18;;chr6:134210243..134210257,+!p1@TCF21!1.44!26.58!TCF21;;chr12:81110684..81110700,+!p1@MYF5!1.36!22.15!MYF5;;chr16:86600426..86600441,+!p1@FOXC2!1.28!43.66!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.27!80.04!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.77!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.24!16.45!ZIC1;;chr14:61116183..61116208,-!p1@SIX1!1.23!60.11!SIX1;;chr1:40105299..40105326,-!p1@HEYL!1.22!15.50!HEYL;;chr5:158526917..158526932,-!p1@EBF1!1.21!37.33!EBF1;;chr11:125034640..125034655,+!p1@PKNOX2!1.15!12.97!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!1.11!114.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.10!61.06!HIF1A;;chr3:147139053..147139112,+!p5@ZIC1!1.06!10.44!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!1.05!10.12!ZIC1;;chr22:19748231..19748317,+!p1@TBX1!1.03!9.81!TBX1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.94!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.34!EBF1;;chr15:80843484..80843499,+!p5@ARNT2!1.01!9.18!ARNT2;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.19!CREB3L1;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.35!C11orf9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.86!GLIS1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.83!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.50!CREB3L1;;chr15:96869255..96869291,+!p6@NR2F2!0.92!13.60!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.91!31.32!ZFHX4;;chr15:96874145..96874166,+!p7@NR2F2!0.90!13.60!NR2F2;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.64!NR2F1;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.91!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!0.84!8.23!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.83!895.35!HIF1A;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.33!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.69!ALX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.69!RUNX1T1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.45!MLLT11;;chr7:137686763..137686784,-!p5@CREB3L2!0.82!10.12!CREB3L2;;chr4:81118647..81118666,+!p1@PRDM8!0.82!7.59!PRDM8;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.37!HMGA2;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.12!ZNF804A;;chr9:16870710..16870763,-!p1@BNC2!0.81!9.81!BNC2;;chr12:66218212..66218244,+!p5@HMGA2!0.80!7.91!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!0.80!5.38!SIX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.78!21.51!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.78!5.69!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.78!5.06!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.78!5.06!FOXS1;;chr7:17338266..17338282,+!p1@AHR!0.77!57.58!AHR;;chr7:113726357..113726443,+!p1@FOXP2!0.77!8.86!FOXP2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.82!TBX2;;chr8:25902876..25902936,-!p1@EBF2!0.76!4.75!EBF2;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.18!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.73!4.43!EBF3;;chr1:170633058..170633084,+!p5@PRRX1!0.73!4.43!PRRX1;;chr15:96869114..96869160,+!p11@NR2F2!0.72!6.01!NR2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.69!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.88!FOXD1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.96!PAWR;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.75!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.61!AEBP1;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.90!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!0.69!6.96!TCF12;;chr15:96874012..96874042,+!p2@NR2F2!0.68!38.91!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.64!MLLT11;;chr2:114036488..114036504,-!p1@PAX8!0.68!3.80!PAX8;;chr11:125034605..125034636,+!p2@PKNOX2!0.68!3.80!PKNOX2;;chr12:66218923..66218934,+!p14@HMGA2!0.68!3.80!HMGA2;;chr5:158524625..158524669,-!p6@EBF1!0.68!3.80!EBF1;;chr8:77593448..77593471,+!p2@ZFHX4!0.68!3.80!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.01!HMGA2;;chr15:96869222..96869251,+!p18@NR2F2!0.67!4.43!NR2F2;;chr21:30671690..30671762,+!p2@BACH1!0.66!13.60!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.73!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.65!5.38!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr12:85674018..85674039,+!p3@ALX1!0.65!3.48!ALX1;;chr3:147127489..147127503,+!p11@ZIC1!0.65!3.48!ZIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.64!24.99!SNAI2;;chr7:19157248..19157268,-!p1@TWIST1!0.64!10.44!TWIST1;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.18!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.20!ARID5B;;chr1:170633262..170633285,+!p3@PRRX1!0.63!3.80!PRRX1;;chr15:96873921..96873946,+!p1@NR2F2!0.62!106.62!NR2F2;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.59!SMARCD3;;chr17:59477275..59477286,+!p3@TBX2!0.62!4.43!TBX2;;chr15:96869206..96869220,+!p21@NR2F2!0.62!3.16!NR2F2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.62!3.16!RUNX1T1;;chr2:5832508..5832524,+!p1@SOX11!0.62!3.16!SOX11;;chr5:321810..321877,+!p1@AHRR!0.61!11.39!AHRR;;chr15:96869292..96869320,+!p15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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor2.CNhs11900.11315-117D1.hg38.nobarcode.ctss.bed.gz
|id=FF:11315-117D1
|id=FF:11315-117D1
|is_a=EFO:0002091;;FF:0000170
|is_a=EFO:0002091;;FF:0000170
|is_obsolete=
|is_obsolete=
|library_id=CNhs11900
|library_id_phase_based=2:CNhs11900
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11315
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GAGTGG.11315
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11315
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GAGTGG.11315
|name=Smooth Muscle Cells - Brain Vascular, donor2
|name=Smooth Muscle Cells - Brain Vascular, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11900,LSID834,release010,COMPLETED
|profile_hcage=CNhs11900,LSID834,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_box=117
|rna_catalog_number=SC1105
|rna_catalog_number=SC1105
Line 59: Line 82:
|rna_tube_id=117D1
|rna_tube_id=117D1
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10009.GAGTGG
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 106:
|top_motifs=SRF:1.64616260801;NR3C1:1.57367511155;TAL1_TCF{3,4,12}:1.50736373324;HMGA1,2:1.4831589916;MYBL2:1.25676135161;ADNP_IRX_SIX_ZHX:1.21291405238;TEAD1:1.19226113344;AIRE:1.09851602589;NKX2-3_NKX2-5:1.00685141824;POU1F1:1.00471557097;TFAP4:1.00271117125;ALX4:1.00116186304;POU3F1..4:0.987507804935;HSF1,2:0.975523551859;ZNF384:0.954000557805;GFI1B:0.901931368625;EVI1:0.8682485752;GLI1..3:0.821942289249;HOX{A5,B5}:0.8066977564;IKZF1:0.794934115052;GZF1:0.785465994573;NFATC1..3:0.764434071597;SOX17:0.743254403738;GFI1:0.725725354954;ATF6:0.704124042173;LHX3,4:0.690282034534;SREBF1,2:0.678320367404;EBF1:0.650194878511;EN1,2:0.64173831225;PAX5:0.64040092758;TFCP2:0.579429572678;HOXA9_MEIS1:0.544262259054;PDX1:0.540568579615;TEF:0.537949286387;GTF2A1,2:0.526425107093;bHLH_family:0.518549985348;NKX2-1,4:0.510619274808;FOXL1:0.481766020666;MAZ:0.474589566787;ZIC1..3:0.455448695526;NFE2L1:0.438649328757;TLX1..3_NFIC{dimer}:0.433381300806;DBP:0.421510956273;POU5F1:0.419693613051;NKX2-2,8:0.410678877117;ARID5B:0.3839258045;NFY{A,B,C}:0.375500848484;ESRRA:0.35263111966;NHLH1,2:0.352619061943;AHR_ARNT_ARNT2:0.34803943669;FOXD3:0.346840994917;MZF1:0.340284501055;RXR{A,B,G}:0.331059211354;LEF1_TCF7_TCF7L1,2:0.323802701197;SP1:0.321934446189;NKX6-1,2:0.319594596325;STAT1,3:0.314439879769;ZNF143:0.314341118622;GTF2I:0.300509730469;NKX3-1:0.299090169373;HES1:0.272068048363;STAT5{A,B}:0.2668733279;NKX3-2:0.25645832571;GATA4:0.249577398111;NRF1:0.24902936025;TGIF1:0.235665735745;UFEwm:0.233590591676;MTE{core}:0.228229382758;CDC5L:0.224137668119;FOXA2:0.207109788295;SOX2:0.204320626546;TFDP1:0.201350403979;HNF1A:0.17789992932;NFE2L2:0.151604382317;E2F1..5:0.146519314413;KLF4:0.141773182069;ZBTB6:0.135885360512;HBP1_HMGB_SSRP1_UBTF:0.133291281685;MEF2{A,B,C,D}:0.133122373396;TBP:0.131246790243;HOX{A4,D4}:0.128217518315;TBX4,5:0.124411246793;MAFB:0.119291896421;TP53:0.114572077366;PAX3,7:0.0985738227399;HIC1:0.0921541880083;TFAP2{A,C}:0.0898055352045;IRF7:0.0866219248887;ELK1,4_GABP{A,B1}:0.0830241751038;NR6A1:0.0819448108975;FOSL2:0.0560974210356;ZNF238:0.0433912036727;PATZ1:0.0415986774784;HMX1:0.0399439482522;PRDM1:0.0345191682485;HNF4A_NR2F1,2:0.0262493403857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0256463611553;PAX8:0.0255373026732;ZFP161:0.0247909660841;ONECUT1,2:0.0174378858407;LMO2:0.00707829455479;PAX1,9:0.00546042899398;NFIX:0.00434125606079;MYB:-0.000470762004214;PAX6:-0.00854110855443;HLF:-0.0117672080065;IRF1,2:-0.0194234569984;PAX2:-0.0289613522857;BACH2:-0.0350603582822;ZNF423:-0.0366892667145;RUNX1..3:-0.046512603673;YY1:-0.0534132979149;FOXP1:-0.0635097698057;ZNF148:-0.0642912127941;ELF1,2,4:-0.0701078429188;XCPE1{core}:-0.0806003322273;XBP1:-0.0817583364477;JUN:-0.0848109417625;PRRX1,2:-0.0882406872335;ZBTB16:-0.106245989278;FOXM1:-0.10718634002;RFX1:-0.110132822785;ATF2:-0.119642218763;IKZF2:-0.129628951287;MYFfamily:-0.139813066062;FOS_FOS{B,L1}_JUN{B,D}:-0.143035491675;NANOG{mouse}:-0.155428306367;TFAP2B:-0.162455267082;CDX1,2,4:-0.16778541466;T:-0.18774187074;NFE2:-0.213673597716;CRX:-0.218048216335;GATA6:-0.229362405739;FOX{I1,J2}:-0.245302937362;SOX5:-0.251956435926;NANOG:-0.252545569628;GCM1,2:-0.255232416463;RBPJ:-0.260388996276;PPARG:-0.262440887934;SMAD1..7,9:-0.264892983293;STAT2,4,6:-0.274523875095;EGR1..3:-0.291855733567;SOX{8,9,10}:-0.292967088144;DMAP1_NCOR{1,2}_SMARC:-0.297195454835;MTF1:-0.305649404011;MED-1{core}:-0.313706650944;ALX1:-0.318484794877;RREB1:-0.327215710922;FOXP3:-0.328886472983;NR1H4:-0.335183152112;ETS1,2:-0.336146248603;HIF1A:-0.339728048865;REST:-0.342791621126;BPTF:-0.348017251924;AR:-0.355030124661;CREB1:-0.355932552582;TLX2:-0.369911449393;FOX{D1,D2}:-0.40680986213;NFKB1_REL_RELA:-0.422413203754;HAND1,2:-0.423306218523;OCT4_SOX2{dimer}:-0.428269466053;HOX{A6,A7,B6,B7}:-0.428882381078;PBX1:-0.43379033485;ESR1:-0.439593452273;FOXN1:-0.460826791043;CEBPA,B_DDIT3:-0.482130789846;SPZ1:-0.483049566737;PAX4:-0.487120172232;RXRA_VDR{dimer}:-0.494842875577;SNAI1..3:-0.503794888382;MYOD1:-0.510406661104;NR5A1,2:-0.516856074868;ATF5_CREB3:-0.525055321728;FOX{F1,F2,J1}:-0.539716822784;SPIB:-0.540258210343;EP300:-0.552317083903;SPI1:-0.553982728614;RORA:-0.555007688786;BREu{core}:-0.556860124094;RFX2..5_RFXANK_RFXAP:-0.562270413441;CUX2:-0.566536452775;POU2F1..3:-0.641396597372;ATF4:-0.650878372679;FOXO1,3,4:-0.680383724375;NFIL3:-0.68916263905;VSX1,2:-0.745195906519;TOPORS:-0.824338057453;PITX1..3:-0.855943502059;ZEB1:-0.874917037203;FOXQ1:-0.954416788883;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.977625254196;POU6F1:-1.27606216313
|top_motifs=SRF:1.64616260801;NR3C1:1.57367511155;TAL1_TCF{3,4,12}:1.50736373324;HMGA1,2:1.4831589916;MYBL2:1.25676135161;ADNP_IRX_SIX_ZHX:1.21291405238;TEAD1:1.19226113344;AIRE:1.09851602589;NKX2-3_NKX2-5:1.00685141824;POU1F1:1.00471557097;TFAP4:1.00271117125;ALX4:1.00116186304;POU3F1..4:0.987507804935;HSF1,2:0.975523551859;ZNF384:0.954000557805;GFI1B:0.901931368625;EVI1:0.8682485752;GLI1..3:0.821942289249;HOX{A5,B5}:0.8066977564;IKZF1:0.794934115052;GZF1:0.785465994573;NFATC1..3:0.764434071597;SOX17:0.743254403738;GFI1:0.725725354954;ATF6:0.704124042173;LHX3,4:0.690282034534;SREBF1,2:0.678320367404;EBF1:0.650194878511;EN1,2:0.64173831225;PAX5:0.64040092758;TFCP2:0.579429572678;HOXA9_MEIS1:0.544262259054;PDX1:0.540568579615;TEF:0.537949286387;GTF2A1,2:0.526425107093;bHLH_family:0.518549985348;NKX2-1,4:0.510619274808;FOXL1:0.481766020666;MAZ:0.474589566787;ZIC1..3:0.455448695526;NFE2L1:0.438649328757;TLX1..3_NFIC{dimer}:0.433381300806;DBP:0.421510956273;POU5F1:0.419693613051;NKX2-2,8:0.410678877117;ARID5B:0.3839258045;NFY{A,B,C}:0.375500848484;ESRRA:0.35263111966;NHLH1,2:0.352619061943;AHR_ARNT_ARNT2:0.34803943669;FOXD3:0.346840994917;MZF1:0.340284501055;RXR{A,B,G}:0.331059211354;LEF1_TCF7_TCF7L1,2:0.323802701197;SP1:0.321934446189;NKX6-1,2:0.319594596325;STAT1,3:0.314439879769;ZNF143:0.314341118622;GTF2I:0.300509730469;NKX3-1:0.299090169373;HES1:0.272068048363;STAT5{A,B}:0.2668733279;NKX3-2:0.25645832571;GATA4:0.249577398111;NRF1:0.24902936025;TGIF1:0.235665735745;UFEwm:0.233590591676;MTE{core}:0.228229382758;CDC5L:0.224137668119;FOXA2:0.207109788295;SOX2:0.204320626546;TFDP1:0.201350403979;HNF1A:0.17789992932;NFE2L2:0.151604382317;E2F1..5:0.146519314413;KLF4:0.141773182069;ZBTB6:0.135885360512;HBP1_HMGB_SSRP1_UBTF:0.133291281685;MEF2{A,B,C,D}:0.133122373396;TBP:0.131246790243;HOX{A4,D4}:0.128217518315;TBX4,5:0.124411246793;MAFB:0.119291896421;TP53:0.114572077366;PAX3,7:0.0985738227399;HIC1:0.0921541880083;TFAP2{A,C}:0.0898055352045;IRF7:0.0866219248887;ELK1,4_GABP{A,B1}:0.0830241751038;NR6A1:0.0819448108975;FOSL2:0.0560974210356;ZNF238:0.0433912036727;PATZ1:0.0415986774784;HMX1:0.0399439482522;PRDM1:0.0345191682485;HNF4A_NR2F1,2:0.0262493403857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0256463611553;PAX8:0.0255373026732;ZFP161:0.0247909660841;ONECUT1,2:0.0174378858407;LMO2:0.00707829455479;PAX1,9:0.00546042899398;NFIX:0.00434125606079;MYB:-0.000470762004214;PAX6:-0.00854110855443;HLF:-0.0117672080065;IRF1,2:-0.0194234569984;PAX2:-0.0289613522857;BACH2:-0.0350603582822;ZNF423:-0.0366892667145;RUNX1..3:-0.046512603673;YY1:-0.0534132979149;FOXP1:-0.0635097698057;ZNF148:-0.0642912127941;ELF1,2,4:-0.0701078429188;XCPE1{core}:-0.0806003322273;XBP1:-0.0817583364477;JUN:-0.0848109417625;PRRX1,2:-0.0882406872335;ZBTB16:-0.106245989278;FOXM1:-0.10718634002;RFX1:-0.110132822785;ATF2:-0.119642218763;IKZF2:-0.129628951287;MYFfamily:-0.139813066062;FOS_FOS{B,L1}_JUN{B,D}:-0.143035491675;NANOG{mouse}:-0.155428306367;TFAP2B:-0.162455267082;CDX1,2,4:-0.16778541466;T:-0.18774187074;NFE2:-0.213673597716;CRX:-0.218048216335;GATA6:-0.229362405739;FOX{I1,J2}:-0.245302937362;SOX5:-0.251956435926;NANOG:-0.252545569628;GCM1,2:-0.255232416463;RBPJ:-0.260388996276;PPARG:-0.262440887934;SMAD1..7,9:-0.264892983293;STAT2,4,6:-0.274523875095;EGR1..3:-0.291855733567;SOX{8,9,10}:-0.292967088144;DMAP1_NCOR{1,2}_SMARC:-0.297195454835;MTF1:-0.305649404011;MED-1{core}:-0.313706650944;ALX1:-0.318484794877;RREB1:-0.327215710922;FOXP3:-0.328886472983;NR1H4:-0.335183152112;ETS1,2:-0.336146248603;HIF1A:-0.339728048865;REST:-0.342791621126;BPTF:-0.348017251924;AR:-0.355030124661;CREB1:-0.355932552582;TLX2:-0.369911449393;FOX{D1,D2}:-0.40680986213;NFKB1_REL_RELA:-0.422413203754;HAND1,2:-0.423306218523;OCT4_SOX2{dimer}:-0.428269466053;HOX{A6,A7,B6,B7}:-0.428882381078;PBX1:-0.43379033485;ESR1:-0.439593452273;FOXN1:-0.460826791043;CEBPA,B_DDIT3:-0.482130789846;SPZ1:-0.483049566737;PAX4:-0.487120172232;RXRA_VDR{dimer}:-0.494842875577;SNAI1..3:-0.503794888382;MYOD1:-0.510406661104;NR5A1,2:-0.516856074868;ATF5_CREB3:-0.525055321728;FOX{F1,F2,J1}:-0.539716822784;SPIB:-0.540258210343;EP300:-0.552317083903;SPI1:-0.553982728614;RORA:-0.555007688786;BREu{core}:-0.556860124094;RFX2..5_RFXANK_RFXAP:-0.562270413441;CUX2:-0.566536452775;POU2F1..3:-0.641396597372;ATF4:-0.650878372679;FOXO1,3,4:-0.680383724375;NFIL3:-0.68916263905;VSX1,2:-0.745195906519;TOPORS:-0.824338057453;PITX1..3:-0.855943502059;ZEB1:-0.874917037203;FOXQ1:-0.954416788883;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.977625254196;POU6F1:-1.27606216313
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11315-117D1;search_select_hide=table117:FF:11315-117D1
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:Smooth Muscle Cells - Brain Vascular, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11900
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4731
catalog numberSC1105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005349
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11900 CAGE DRX008476 DRR009348
Accession ID Hg19

Library idBAMCTSS
CNhs11900 DRZ000773 DRZ002158
Accession ID Hg38

Library idBAMCTSS
CNhs11900 DRZ012123 DRZ013508
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005349
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GAGTGG sRNA-Seq DRX037146 DRR041512
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GAGTGG DRZ007154


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.214
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.211
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.213
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0161
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0763
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.287
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.173
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0886
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.154
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.119
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0869
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.005
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0728
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.355
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.213
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.462
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.355
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.585
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11900

Jaspar motifP-value
MA0002.20.0772
MA0003.10.902
MA0004.10.716
MA0006.10.212
MA0007.10.572
MA0009.10.00508
MA0014.10.673
MA0017.10.213
MA0018.20.019
MA0019.10.911
MA0024.10.715
MA0025.10.00847
MA0027.10.299
MA0028.10.833
MA0029.10.272
MA0030.10.17
MA0031.10.019
MA0035.20.113
MA0038.10.00487
MA0039.20.39
MA0040.10.786
MA0041.10.988
MA0042.10.752
MA0043.13.78592e-4
MA0046.10.482
MA0047.20.182
MA0048.10.247
MA0050.10.132
MA0051.10.952
MA0052.10.0221
MA0055.10.501
MA0057.10.933
MA0058.10.964
MA0059.10.136
MA0060.10.0334
MA0061.12.5323e-6
MA0062.20.0141
MA0065.20.0163
MA0066.10.662
MA0067.10.00363
MA0068.10.384
MA0069.10.627
MA0070.10.768
MA0071.10.354
MA0072.10.4
MA0073.10.693
MA0074.10.234
MA0076.10.953
MA0077.10.786
MA0078.10.519
MA0079.20.419
MA0080.21.43177e-9
MA0081.10.0361
MA0083.11.61932e-9
MA0084.10.429
MA0087.10.456
MA0088.10.476
MA0090.15.82482e-7
MA0091.10.177
MA0092.10.616
MA0093.10.928
MA0099.20.13
MA0100.10.298
MA0101.11.55921e-4
MA0102.20.00193
MA0103.18.81785e-4
MA0104.20.0907
MA0105.12.98643e-5
MA0106.10.991
MA0107.11.89255e-5
MA0108.20.068
MA0111.10.365
MA0112.20.322
MA0113.10.814
MA0114.10.0807
MA0115.10.00766
MA0116.10.0179
MA0117.10.445
MA0119.10.366
MA0122.10.971
MA0124.10.161
MA0125.10.668
MA0131.10.919
MA0135.10.704
MA0136.19.01084e-9
MA0137.20.827
MA0138.20.239
MA0139.10.571
MA0140.10.918
MA0141.10.0123
MA0142.10.655
MA0143.10.878
MA0144.10.659
MA0145.10.627
MA0146.10.481
MA0147.10.045
MA0148.10.251
MA0149.10.436
MA0150.10.0284
MA0152.10.188
MA0153.10.0266
MA0154.10.0169
MA0155.10.784
MA0156.14.27567e-6
MA0157.10.275
MA0159.10.0906
MA0160.10.00165
MA0162.10.0852
MA0163.10.324
MA0164.10.425
MA0258.10.0133
MA0259.10.371



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11900

Novel motifP-value
10.069
100.216
1000.748
1010.874
1020.0375
1030.475
1040.909
1050.469
1060.0245
1070.291
1080.0642
1090.299
110.441
1100.698
1110.031
1120.167
1130.513
1140.321
1150.322
1160.476
1170.384
1180.294
1190.789
120.0539
1200.778
1210.543
1220.108
1232.80521e-4
1240.901
1250.421
1260.502
1270.0856
1280.373
1290.878
130.304
1300.095
1310.151
1320.752
1330.042
1340.28
1350.506
1360.63
1370.0361
1380.111
1390.0821
140.375
1400.0739
1410.0249
1420.969
1430.134
1440.964
1450.619
1460.145
1470.196
1480.13
1490.377
150.474
1500.375
1510.398
1520.432
1530.494
1540.393
1555.49405e-4
1560.319
1570.0304
1580.011
1590.292
160.784
1600.481
1610.619
1620.393
1630.497
1640.288
1650.433
1660.079
1670.636
1680.388
1690.483
170.532
180.397
190.678
20.538
200.28
210.186
220.713
230.922
240.344
250.605
260.593
270.605
280.48
290.771
30.646
300.21
310.82
327.50093e-5
330.418
340.911
350.0328
360.374
370.468
380.344
390.607
40.15
400.386
410.0633
420.468
430.246
440.386
450.866
460.299
470.374
480.449
490.0864
50.784
500.677
510.433
520.718
530.224
540.966
550.373
560.563
570.974
580.0298
590.376
60.833
600.0616
610.475
620.052
630.184
640.324
650.415
660.186
670.778
680.377
690.891
70.527
700.0106
710.355
720.63
730.963
740.895
750.0434
760.35
770.387
780.51
790.663
80.847
800.655
810.612
820.0188
830.591
840.438
850.147
860.65
870.758
880.663
890.617
90.713
900.761
910.82
920.684
930.587
940.301
950.16
960.37
970.161
980.00735
990.00146



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11900


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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