FF:11504-119G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005176 | |||
|accession_numbers=CAGE;DRX008299;DRR009171;DRZ000596;DRZ001981;DRZ011946;DRZ013331 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!1.69!54.33!RUNX2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.27!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.59!43.19!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.58!61.30!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.54!58.51!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.19!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.48!520.09!FOSB;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.79!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.33!TCF21;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.05!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.36!32.04!NFIX;;chr8:93074803..93074845,-!p1@RUNX1T1!1.36!21.83!RUNX1T1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.36!21.83!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.01!EBF1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.97!KCNIP3;;chr2:119605214..119605230,-!p1@EN1!1.31!19.50!EN1;;chr5:137804484..137804498,+!p2@EGR1!1.27!70.12!EGR1;;chr5:92918919..92918942,+!p1@NR2F1!1.26!74.76!NR2F1;;chr3:157823517..157823562,-!p1@SHOX2!1.26!18.57!SHOX2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.18!TBX20;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.72!KCNIP3;;chr6:108977520..108977534,+!p7@FOXO3!1.23!15.79!FOXO3;;chr2:176994408..176994492,+!p1@HOXD8!1.21!15.32!HOXD8;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.08!TWIST2;;chr2:96012757..96012779,+!p8@KCNIP3!1.17!13.93!KCNIP3;;chr13:45151259..45151326,-!p2@TSC22D1!1.16!80.34!TSC22D1;;chr14:75746722..75746777,+!p2@FOS!1.15!16.72!FOS;;chr14:75745523..75745537,+!p1@FOS!1.13!1479.01!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.25!PRRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.12!12.07!HOXC8;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.69!SNAI2;;chr2:214015111..214015179,-!p1@IKZF2!1.10!20.90!IKZF2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.72!ZBTB16;;chr1:170632250..170632277,+!p7@PRRX1!1.10!11.61!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.08!11.14!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.07!27.40!TWIST1;;chr9:77112244..77112262,+!p1@RORB!1.07!12.07!RORB;;chr3:147127142..147127168,+!p1@ZIC1!1.07!10.68!ZIC1;;chr5:137801160..137801176,+!p1@EGR1!1.06!1036.47!EGR1;;chr14:61116183..61116208,-!p1@SIX1!1.06!39.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.61!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.02!10.22!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.22!PRRX1;;chr8:116673894..116673913,-!p12@TRPS1!1.01!9.29!TRPS1;;chr3:147127177..147127194,+!p2@ZIC1!1.01!9.29!ZIC1;;chr3:187463179..187463201,-!p2@BCL6!1.00!38.08!BCL6;;chr12:54394309..54394336,+!p2@HOXC9!0.99!8.82!HOXC9;;chr11:65687362..65687436,+!p3@DRAP1!0.98!40.40!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.58!CREB3L1;;chr5:92918894..92918912,+!p2@NR2F1!0.97!27.86!NR2F1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.36!RUNX1T1;;chr2:96012353..96012378,+!p4@KCNIP3!0.97!8.36!KCNIP3;;chrY:21906594..21906622,-!p1@KDM5D!0.97!8.36!KDM5D;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.75!OSR1;;chr2:231084820..231084836,-!p5@SP110!0.96!9.29!SP110;;chr2:119604456..119604501,-!p2@EN1!0.95!7.89!EN1;;chr12:54393880..54393962,+!p1@HOXC9!0.95!7.89!HOXC9;;chr10:63809013..63809041,+!p3@ARID5B!0.94!44.58!ARID5B;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.67!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.93!11.61!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.93!8.36!NR2F1;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.43!PAX3;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.43!PRRX1;;chrX:66763856..66763896,+!p1@AR!0.92!10.68!AR;;chr10:31607702..31607755,+!p3@ZEB1!0.91!8.36!ZEB1;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.29!EBF1;;chr3:147111231..147111281,+!p3@ZIC1!0.90!6.97!ZIC1;;chr3:147139053..147139112,+!p5@ZIC1!0.90!6.97!ZIC1;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.54!TBX18;;chr6:85473156..85473210,-!p2@TBX18!0.89!8.36!TBX18;;chr5:92920456..92920488,+!p9@NR2F1!0.89!7.89!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.89!HOXB6;;chr15:57511589..57511608,+!p4@TCF12!0.88!6.50!TCF12;;chr11:113930401..113930422,+!p3@ZBTB16!0.88!6.50!ZBTB16;;chr13:45150455..45150472,-!p8@TSC22D1!0.88!6.50!TSC22D1;;chr12:53614115..53614154,-!p1@RARG!0.87!36.22!RARG;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.90!IFI16;;chr3:141105705..141105770,+!p4@ZBTB38!0.87!7.89!ZBTB38;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.65!HOXB2;;chr10:31607811..31607837,+!p6@ZEB1!0.85!6.04!ZEB1;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.04!IRX2;;chr19:13136130..13136165,+!p6@NFIX!0.84!7.89!NFIX;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.40!NFATC4;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr5:92919100..92919135,+!p3@NR2F1!0.82!6.97!NR2F1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.57!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.82!5.57!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.57!NFIX;;chrX:66763815..66763854,+!p2@AR!0.81!7.43!AR;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.43!TEAD1;;chr9:73029219..73029289,-!p2@KLF9!0.80!17.18!KLF9;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.29!CREB3L1;;chr3:168865194..1688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| |expression_enrichment_score=chr6:45296048..45296082,+!p1@RUNX2!1.69!54.33!RUNX2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.27!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.59!43.19!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.58!61.30!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.54!58.51!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.19!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.48!520.09!FOSB;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.79!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.33!TCF21;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.05!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.36!32.04!NFIX;;chr8:93074803..93074845,-!p1@RUNX1T1!1.36!21.83!RUNX1T1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.36!21.83!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.01!EBF1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.97!KCNIP3;;chr2:119605214..119605230,-!p1@EN1!1.31!19.50!EN1;;chr5:137804484..137804498,+!p2@EGR1!1.27!70.12!EGR1;;chr5:92918919..92918942,+!p1@NR2F1!1.26!74.76!NR2F1;;chr3:157823517..157823562,-!p1@SHOX2!1.26!18.57!SHOX2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.18!TBX20;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.72!KCNIP3;;chr6:108977520..108977534,+!p7@FOXO3!1.23!15.79!FOXO3;;chr2:176994408..176994492,+!p1@HOXD8!1.21!15.32!HOXD8;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.08!TWIST2;;chr2:96012757..96012779,+!p8@KCNIP3!1.17!13.93!KCNIP3;;chr13:45151259..45151326,-!p2@TSC22D1!1.16!80.34!TSC22D1;;chr14:75746722..75746777,+!p2@FOS!1.15!16.72!FOS;;chr14:75745523..75745537,+!p1@FOS!1.13!1479.01!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.25!PRRX2;;chr12:54402745..54402788,+!p1@HOXC8!1.12!12.07!HOXC8;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.69!SNAI2;;chr2:214015111..214015179,-!p1@IKZF2!1.10!20.90!IKZF2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.72!ZBTB16;;chr1:170632250..170632277,+!p7@PRRX1!1.10!11.61!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.08!11.14!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.07!27.40!TWIST1;;chr9:77112244..77112262,+!p1@RORB!1.07!12.07!RORB;;chr3:147127142..147127168,+!p1@ZIC1!1.07!10.68!ZIC1;;chr5:137801160..137801176,+!p1@EGR1!1.06!1036.47!EGR1;;chr14:61116183..61116208,-!p1@SIX1!1.06!39.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.61!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.02!10.22!NR2F1;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.22!PRRX1;;chr8:116673894..116673913,-!p12@TRPS1!1.01!9.29!TRPS1;;chr3:147127177..147127194,+!p2@ZIC1!1.01!9.29!ZIC1;;chr3:187463179..187463201,-!p2@BCL6!1.00!38.08!BCL6;;chr12:54394309..54394336,+!p2@HOXC9!0.99!8.82!HOXC9;;chr11:65687362..65687436,+!p3@DRAP1!0.98!40.40!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.58!CREB3L1;;chr5:92918894..92918912,+!p2@NR2F1!0.97!27.86!NR2F1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.36!RUNX1T1;;chr2:96012353..96012378,+!p4@KCNIP3!0.97!8.36!KCNIP3;;chrY:21906594..21906622,-!p1@KDM5D!0.97!8.36!KDM5D;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.75!OSR1;;chr2:231084820..231084836,-!p5@SP110!0.96!9.29!SP110;;chr2:119604456..119604501,-!p2@EN1!0.95!7.89!EN1;;chr12:54393880..54393962,+!p1@HOXC9!0.95!7.89!HOXC9;;chr10:63809013..63809041,+!p3@ARID5B!0.94!44.58!ARID5B;;chr8:49833978..49833996,-!p1@SNAI2!0.93!160.67!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.93!11.61!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.93!8.36!NR2F1;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.43!PAX3;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.43!PRRX1;;chrX:66763856..66763896,+!p1@AR!0.92!10.68!AR;;chr10:31607702..31607755,+!p3@ZEB1!0.91!8.36!ZEB1;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.29!EBF1;;chr3:147111231..147111281,+!p3@ZIC1!0.90!6.97!ZIC1;;chr3:147139053..147139112,+!p5@ZIC1!0.90!6.97!ZIC1;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.54!TBX18;;chr6:85473156..85473210,-!p2@TBX18!0.89!8.36!TBX18;;chr5:92920456..92920488,+!p9@NR2F1!0.89!7.89!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.89!HOXB6;;chr15:57511589..57511608,+!p4@TCF12!0.88!6.50!TCF12;;chr11:113930401..113930422,+!p3@ZBTB16!0.88!6.50!ZBTB16;;chr13:45150455..45150472,-!p8@TSC22D1!0.88!6.50!TSC22D1;;chr12:53614115..53614154,-!p1@RARG!0.87!36.22!RARG;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.90!IFI16;;chr3:141105705..141105770,+!p4@ZBTB38!0.87!7.89!ZBTB38;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.65!HOXB2;;chr10:31607811..31607837,+!p6@ZEB1!0.85!6.04!ZEB1;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.04!IRX2;;chr19:13136130..13136165,+!p6@NFIX!0.84!7.89!NFIX;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.40!NFATC4;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr5:92919100..92919135,+!p3@NR2F1!0.82!6.97!NR2F1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.57!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.82!5.57!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.57!NFIX;;chrX:66763815..66763854,+!p2@AR!0.81!7.43!AR;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.43!TEAD1;;chr9:73029219..73029289,-!p2@KLF9!0.80!17.18!KLF9;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.29!CREB3L1;;chr3:168865194..168865245,-!p3@MECOM!0.80!6.97!MECOM;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.79!ZMAT3;;chr12:66218598..66218645,+!p2@HMGA2!0.79!26.00!HMGA2;;chr12:57504975..57505019,-!p2@STAT6!0.79!22.75!STAT6;;chr11:113930291..113930339,+!p2@ZBTB16!0.79!8.82!ZBTB16;;chr11:44331576..44331650,-!p1@ALX4!0.79!5.11!ALX4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.11!HOXC5;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.11!FOXL2;;chr15:67391010..67391046,+!p13@SMAD3!0.79!5.11!SMAD3;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.72!TBX2;;chr19:13136241..13136258,+!p7@NFIX!0.78!6.97!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.75!119.81!NFIX;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.82!NFIX;;chr19:31840130..31840160,-!p2@TSHZ3!0.75!7.43!TSHZ3;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.43!OSR2;;chr20:55204351..55204377,+!p1@TFAP2C!0.75!6.04!TFAP2C;;chr5:92919068..92919082,+!p5@NR2F1!0.75!5.57!NR2F1;;chr2:95963120..95963136,+!p2@KCNIP3!0.75!4.64!KCNIP3;;chr3:147111505..147111529,+!p6@ZIC1!0.75!4.64!ZIC1;;chr3:181429741..181429767,+!p2@SOX2!0.75!4.64!SOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.64!CREB3L1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.64!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.64!ZFY;;chrX:106960285..106960299,-!p1@TSC22D3!0.74!134.20!TSC22D3;;chrX:106960180..106960197,-!p2@TSC22D3!0.74!19.04!TSC22D3;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.04!NFATC2;;chr6:108881012..108881034,+!p3@FOXO3!0.73!17.18!FOXO3;;chr12:48298765..48298783,-!p2@VDR!0.71!9.29!VDR;;chr2:28618532..28618610,+!p4@FOSL2!0.71!7.43!FOSL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.71!4.18!ZBTB38;;chr12:53625846..53625861,-!p6@RARG!0.71!4.18!RARG;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.18!ARNT2;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.18!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!0.70!588.35!CEBPD;;chr3:141087393..141087426,+!p3@ZBTB38!0.70!17.65!ZBTB38;;chr10:77161533..77161546,-!p2@ZNF503!0.70!17.65!ZNF503;;chr9:2015306..2015323,+!p3@SMARCA2!0.70!11.61!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!6.97!MEIS3;;chr1:59249707..59249727,-!p1@JUN!0.69!189.00!JUN;;chr7:44143925..44143970,+!p1@AEBP1!0.69!99.84!AEBP1;;chr9:2015335..2015370,+!p1@SMARCA2!0.69!53.87!SMARCA2;;chr5:72744594..72744609,-!p1@FOXD1!0.69!19.97!FOXD1;;chr8:77593474..77593612,+!p1@ZFHX4!0.69!18.57!ZFHX4;;chr20:39946361..39946379,-!p2@ZHX3!0.69!13.00!ZHX3;;chr13:45151403..45151433,-!p5@TSC22D1!0.69!9.29!TSC22D1;;chr5:43067636..43067674,+!p6@ZNF131!0.69!5.57!ZNF131;;chr5:137804130..137804156,+!p5@EGR1!0.69!4.18!EGR1;;chr19:12902289..12902307,+!p1@JUNB!0.68!1000.25!JUNB;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.05!ZNF503;;chr14:62162258..62162269,+!p2@HIF1A!0.68!41.79!HIF1A;;chr1:59249688..59249703,-!p3@JUN!0.68!26.00!JUN;;chr7:42276787..42276815,-!p1@GLI3!0.68!11.14!GLI3;;chr13:41240717..41240735,-!p2@FOXO1!0.67!28.79!FOXO1;;chr10:63853436..63853442,+!p4@ARID5B!0.67!22.29!ARID5B;;chr8:22550982..22550999,-!p1@EGR3!0.67!11.61!EGR3;;chr1:221053049..221053075,+!p3@HLX!0.67!6.97!HLX;;chr1:170632137..170632172,+!p10@PRRX1!0.67!3.71!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.71!IRX2;;chr15:80842979..80842998,+!p20@ARNT2!0.67!3.71!ARNT2;;chr2:119605374..119605377,-!p7@EN1!0.67!3.71!EN1;;chr2:214014959..214015006,-!p4@IKZF2!0.67!3.71!IKZF2;;chr3:147111198..147111225,+!p4@ZIC1!0.67!3.71!ZIC1;;chr13:73633131..73633149,+!p1@KLF5!0.66!44.58!KLF5;;chr9:73028814..73028895,-!p1@KLF9!0.66!41.33!KLF9;;chr8:57123815..57123867,-!p1@PLAG1!0.66!16.72!PLAG1;;chr18:53068911..53068935,-!p4@TCF4!0.66!4.18!TCF4;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.36!ZNF503;;chr5:137804357..137804390,+!p4@EGR1!0.65!4.18!EGR1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.65!3.71!GLIS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!282.34!TAX1BP3;;chr20:39317868..39317884,-!p1@MAFB!0.64!47.37!MAFB;;chr12:66218255..66218304,+!p3@HMGA2!0.64!10.22!HMGA2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.89!SATB2;;chr3:168864315..168864339,-!p2@MECOM!0.64!6.04!MECOM;;chr15:42743341..42743377,-!p3@ZFP106!0.64!6.04!ZFP106;;chr5:137804405..137804444,+!p3@EGR1!0.64!4.18!EGR1;;chr17:40440481..40440550,+!p1@STAT5A!0.63!27.86!STAT5A;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.18!HOXC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.71!CREB3L1;;chr5:92918860..92918871,+!p10@NR2F1!0.63!3.71!NR2F1;;chr1:170632028..170632043,+!p20@PRRX1!0.63!3.25!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.25!ZNF668;;chr17:46675558..46675577,-!p2@HOXB6!0.63!3.25!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.25!RFX8;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.25!IKZF2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.25!FOXL2;;chr3:147110055..147110129,-!p1@ZIC4!0.63!3.25!ZIC4;;chr3:25470156..25470227,+!p2@RARB!0.63!3.25!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.63!3.25!ZBTB47;;chr15:83953397..83953425,-!p1@BNC1!0.62!3.71!BNC1;;chr12:48298785..48298828,-!p1@VDR!0.61!19.50!VDR;;chr12:104531854..104531893,-!p2@NFYB!0.61!13.00!NFYB;;chr3:187463220..187463232,-!p3@BCL6!0.61!10.68!BCL6;;chr5:34929947..34930005,+!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AT5!0.23!1.39!NFAT5;;chr19:12175504..12175519,+!p2@ZNF844!0.23!1.39!ZNF844;;chr10:76585303..76585354,+!p4@KAT6B!0.23!1.39!KAT6B;;chr12:124827609..124827643,-!p9@NCOR2!0.23!1.39!NCOR2;;chr14:62193465..62193490,+!p7@HIF1A!0.23!1.39!HIF1A;;chr14:64971404..64971415,+!p7@ZBTB1!0.23!1.39!ZBTB1;;chr8:57123873..57123894,-!p2@PLAG1!0.23!1.39!PLAG1;;chr5:124080203..124080258,-!p5@ZNF608!0.23!0.93!ZNF608;;chr7:44143738..44143760,+!p4@AEBP1!0.23!0.93!AEBP1;;chr8:72756637..72756664,-!p3@MSC!0.23!0.93!MSC;;chr12:80083689..80083706,-!p16@PAWR!0.23!0.93!PAWR;;chr15:35280863..35280908,-!p3@ZNF770!0.23!0.93!ZNF770;;chr15:37392687..37392698,-!p14@MEIS2!0.23!0.93!MEIS2;;chr17:17726892..17726903,-!p6@SREBF1!0.23!0.93!SREBF1;;chr7:28220354..28220441,-!p1@JAZF1!0.22!22.75!JAZF1;;chr15:31619326..31619390,+!p2@KLF13!0.22!16.72!KLF13;;chr16:1464688..1464728,-!p1@UNKL!0.22!9.75!UNKL;;chr19:52901094..52901134,+!p1@ZNF528!0.22!9.29!ZNF528;;chr9:139294638..139294678,-!p@chr9:139294638..139294678,-!0.22!7.43!SNAPC4;;chr3:18466787..18466839,-!p1@SATB1!0.22!6.04!SATB1;;chr11:65686732..65686756,+!p2@DRAP1!0.22!5.57!DRAP1;;chr10:38265517..38265591,-!p1@ZNF25!0.22!5.11!ZNF25;;chr10:43133950..43133994,-!p2@ZNF33B!0.22!4.64!ZNF33B;;chr8:128749984..128750033,+!p4@MYC!0.22!4.64!MYC;;chr19:44331493..44331552,+!p1@ZNF283!0.22!4.64!ZNF283;;chr1:8934931..8934947,-!p4@ENO1!0.22!4.18!ENO1;;chrX:134478706..134478736,+!p1@ZNF449!0.22!4.18!ZNF449;;chr12:133758115..133758138,+!p3@ZNF268!0.22!2.79!ZNF268;;chr10:43932296..43932360,+!p1@ZNF487P!0.22!2.32!ZNF487P;;chr10:64576105..64576133,-!p1@EGR2!0.22!2.32!EGR2;;chr4:144435112..144435176,+!p3@SMARCA5!0.22!2.32!SMARCA5;;chr1:8923998..8924033,-!p8@ENO1!0.22!1.86!ENO1;;chr19:10305752..10305792,-!p2@DNMT1!0.22!1.86!DNMT1;;chr19:12444458..12444486,-!p2@ZNF563!0.22!1.39!ZNF563;;chr9:88969226..88969237,-!p4@ZCCHC6!0.22!1.39!ZCCHC6;;chr12:19592847..19592882,+!p8@AEBP2!0.22!1.39!AEBP2;;chr19:57792157..57792170,+!p6@ZNF460!0.22!1.39!ZNF460;;chr1:158985469..158985489,+!p7@IFI16!0.22!0.93!IFI16;;chr1:935519..935532,-!p4@HES4!0.22!0.93!HES4;;chr4:2264015..2264041,-!p4@MXD4!0.22!0.93!MXD4;;chr16:67063262..67063273,+!p7@CBFB!0.22!0.93!CBFB;;chr12:96640858..96640878,+!p6@ELK3!0.22!0.93!ELK3;;chr13:73636252..73636307,+!p2@KLF5!0.22!0.93!KLF5;;chr7:99156011..99156036,+!p7@ZNF655!0.22!0.93!ZNF655;;chr3:37217756..37217844,-!p1@LRRFIP2!0.21!94.73!LRRFIP2;;chrX:48900871..48900890,-!p1@TFE3!0.21!75.69!TFE3;;chr5:16465902..16465917,-!p1@ZNF622!0.21!34.83!ZNF622;;chr4:26322616..26322652,+!p1@RBPJ!0.21!31.11!RBPJ;;chr6:43139153..43139232,+!p1@SRF!0.21!13.47!SRF;;chr9:88969303..88969335,-!p1@ZCCHC6!0.21!13.00!ZCCHC6;;chrX:128657413..128657456,-!p2@SMARCA1!0.21!12.07!SMARCA1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.21!10.68!ZCCHC6;;chr9:99540335..99540388,-!p1@ZNF510!0.21!10.22!ZNF510;;chr19:56879653..56879743,+!p1@ZNF542!0.21!10.22!ZNF542;;chr9:104161123..104161205,+!p1@ZNF189!0.21!9.75!ZNF189;;chr13:45151434..45151507,-!p3@TSC22D1!0.21!7.43!TSC22D1;;chr17:16472486..16472533,-!p1@ZNF287!0.21!6.50!ZNF287;;chr15:37392724..37392757,-!p1@MEIS2!0.21!6.04!MEIS2;;chr17:56065729..56065781,-!p2@VEZF1!0.21!5.57!VEZF1;;chr19:12251144..12251181,-!p2@ZNF20!0.21!5.57!ZNF20;;chrX:48900899..48900917,-!p2@TFE3!0.21!5.57!TFE3;;chr17:38498594..38498661,+!p2@RARA!0.21!4.18!RARA;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.21!3.25!ZFP112;;chr1:164528340..164528379,+!p4@PBX1!0.21!2.79!PBX1;;chr14:35872453..35872485,-!p2@NFKBIA!0.21!2.79!NFKBIA;;chr13:41635029..41635044,-!p4@ELF1!0.21!2.32!ELF1;;chr19:19729477..19729542,-!p1@PBX4!0.21!2.32!PBX4;;chr19:9879350..9879419,-!p2@ZNF846!0.21!2.32!ZNF846;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002561;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor1.CNhs12339.11504-119G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11504-119G1 | |id=FF:11504-119G1 | ||
|is_a=EFO:0002091;;FF:0000075 | |is_a=EFO:0002091;;FF:0000075 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12339 | |||
|library_id_phase_based=2:CNhs12339 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11504 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11504 | |||
|name=Hair Follicle Outer Root Sheath Cells, donor1 | |name=Hair Follicle Outer Root Sheath Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12339,LSID913,release011,COMPLETED | |profile_hcage=CNhs12339,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.12495472419887,0,0.181148641533999,0.259792164324404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424881408906743,0,0.437563953783601,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.24670073409724,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.578204419255171,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0242194806122822,0,0,0,-0.163801289490164,0.077904806931717,0,0.37896153349969,0,0.165650208579294,0.0676148573415875,0.198261042149255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502190614320855,0,0,0,0.174060861057261,0.20011337236608,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2425 | |rna_catalog_number=SC2425 | ||
Line 60: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=NKX2-1,4:2.22719659631;FOXL1:2.14123911103;RXR{A,B,G}:2.11402142717;GZF1:2.09361936322;NKX2-2,8:1.92914844638;UFEwm:1.69426059799;ALX4:1.66988342111;AIRE:1.6165483428;EBF1:1.53190470501;ZNF238:1.5116452618;NR3C1:1.4166404261;ESR1:1.40071328492;KLF4:1.36255839082;FOXD3:1.34675728333;ATF6:1.31653373208;NKX3-1:1.29330727336;EVI1:1.27979950969;NFE2L1:1.23920507462;NFATC1..3:1.20470367151;SRF:1.17304855937;SOX5:1.06901119391;HMX1:1.06014463889;FOXO1,3,4:1.03958513299;HMGA1,2:1.02888035753;TP53:0.927398442601;PAX1,9:0.920454192344;TAL1_TCF{3,4,12}:0.918282511218;XBP1:0.91732193583;HES1:0.879036432044;RXRA_VDR{dimer}:0.876450970524;NKX3-2:0.844314835749;HIF1A:0.833877162315;NKX6-1,2:0.823478243384;TEAD1:0.815018046745;GATA4:0.814192052655;BPTF:0.797063780625;EN1,2:0.795608856019;GFI1B:0.77010012721;TFAP4:0.747066787732;ZBTB16:0.70538819121;GLI1..3:0.656150529261;TLX1..3_NFIC{dimer}:0.60720761387;MYBL2:0.568378472602;DBP:0.551713459642;ZIC1..3:0.472577425121;HOX{A5,B5}:0.457131052685;PAX5:0.441752721702;bHLH_family:0.42119739084;NANOG{mouse}:0.407219792276;TOPORS:0.391574192669;TFCP2:0.380579858408;DMAP1_NCOR{1,2}_SMARC:0.377979693673;HAND1,2:0.377970968794;HSF1,2:0.370543913131;HOX{A4,D4}:0.347712351301;NHLH1,2:0.341818920223;NFIX:0.338242871401;ZBTB6:0.330104014263;STAT2,4,6:0.324381710775;ZNF384:0.324330562916;YY1:0.320357822029;FOX{I1,J2}:0.320222428675;PRDM1:0.297640963988;IKZF1:0.295924499827;PATZ1:0.292810525184;MZF1:0.278675619254;ESRRA:0.277636270812;GTF2I:0.271555767703;IRF1,2:0.25744220469;GTF2A1,2:0.253073429224;AR:0.24594863635;NR6A1:0.224881606979;MAFB:0.221147987839;NR1H4:0.218359512599;HOX{A6,A7,B6,B7}:0.21751536105;FOX{D1,D2}:0.202104181729;FOXP3:0.186737623581;TBP:0.184729598747;AHR_ARNT_ARNT2:0.159841168406;TFAP2{A,C}:0.15921547213;ELK1,4_GABP{A,B1}:0.132410968916;HLF:0.113973619702;SOX17:0.111322053512;LHX3,4:0.0827985442566;MYFfamily:0.069280146463;NFE2L2:0.0559712453006;MTF1:0.0498601704687;ARID5B:0.0439720896153;MAZ:0.0329920369675;MEF2{A,B,C,D}:0.0326867278871;STAT1,3:0.0233153818639;LEF1_TCF7_TCF7L1,2:0.0229060618701;CEBPA,B_DDIT3:0.0171913725439;ZNF423:0.0171254294755;SPZ1:-0.0123952270008;RUNX1..3:-0.0170513698534;HNF4A_NR2F1,2:-0.0390721785903;STAT5{A,B}:-0.0443282425302;MED-1{core}:-0.053090487771;HNF1A:-0.0783896588876;RFX1:-0.0842566133374;GCM1,2:-0.0926189913482;BACH2:-0.0989303347493;IKZF2:-0.102320415967;RREB1:-0.105143189783;REST:-0.12220910802;CDX1,2,4:-0.138025000343;NFKB1_REL_RELA:-0.139434154158;PRRX1,2:-0.153702367639;NFE2:-0.161776876322;SMAD1..7,9:-0.203802392554;TGIF1:-0.212423181153;PAX8:-0.213650499704;FOS_FOS{B,L1}_JUN{B,D}:-0.229261767655;ATF5_CREB3:-0.233015956734;HIC1:-0.234510911276;ZNF148:-0.252013616464;PAX4:-0.259777740273;SP1:-0.275052231316;HBP1_HMGB_SSRP1_UBTF:-0.302336941419;RFX2..5_RFXANK_RFXAP:-0.303919890128;TFAP2B:-0.304275853711;POU3F1..4:-0.304812702798;CREB1:-0.30816818061;TEF:-0.351991933366;ZNF143:-0.353230429379;MTE{core}:-0.366102018114;NFIL3:-0.381419822091;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.386664392741;XCPE1{core}:-0.393503156694;TBX4,5:-0.393999847505;EGR1..3:-0.394736125354;ATF4:-0.399090460753;TFDP1:-0.400863937081;JUN:-0.408237225581;T:-0.413241906483;IRF7:-0.422084099946;ONECUT1,2:-0.42547012987;NKX2-3_NKX2-5:-0.42629708561;PAX3,7:-0.434479764968;ELF1,2,4:-0.442610906968;FOSL2:-0.455460916448;SPI1:-0.465462671768;SREBF1,2:-0.465664301279;POU6F1:-0.484377737957;FOXN1:-0.489097507206;ETS1,2:-0.493550345636;RORA:-0.511390453018;NRF1:-0.521793949936;RBPJ:-0.556193753912;GFI1:-0.559018479287;ZFP161:-0.572641195137;HOXA9_MEIS1:-0.589313492134;FOXP1:-0.599082148307;SPIB:-0.634577162017;MYB:-0.650817710017;ATF2:-0.68558056051;FOXA2:-0.694105995994;POU2F1..3:-0.700021647676;PBX1:-0.705005077435;CUX2:-0.712971924193;PAX2:-0.728375800014;CDC5L:-0.756553950667;PITX1..3:-0.803505206286;ADNP_IRX_SIX_ZHX:-0.86880358408;GATA6:-0.88505097019;TLX2:-0.899051020635;FOXQ1:-0.9195730714;PDX1:-0.942616945128;CRX:-0.95341737437;BREu{core}:-0.954295103159;E2F1..5:-0.964914945027;FOXM1:-0.966192009841;SNAI1..3:-0.99226673594;ALX1:-0.99523678645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.99565494363;POU1F1:-1.05431496433;NFY{A,B,C}:-1.06516377002;FOX{F1,F2,J1}:-1.07481903262;LMO2:-1.13885549929;SOX2:-1.15298368107;NANOG:-1.1810765651;POU5F1:-1.20949953159;EP300:-1.26689894255;ZEB1:-1.28955644521;OCT4_SOX2{dimer}:-1.29265179238;PAX6:-1.30921707725;SOX{8,9,10}:-1.46285137985;MYOD1:-1.57861093451;NR5A1,2:-1.68340747124;PPARG:-1.88360863137;VSX1,2:-2.00327298243 | |top_motifs=NKX2-1,4:2.22719659631;FOXL1:2.14123911103;RXR{A,B,G}:2.11402142717;GZF1:2.09361936322;NKX2-2,8:1.92914844638;UFEwm:1.69426059799;ALX4:1.66988342111;AIRE:1.6165483428;EBF1:1.53190470501;ZNF238:1.5116452618;NR3C1:1.4166404261;ESR1:1.40071328492;KLF4:1.36255839082;FOXD3:1.34675728333;ATF6:1.31653373208;NKX3-1:1.29330727336;EVI1:1.27979950969;NFE2L1:1.23920507462;NFATC1..3:1.20470367151;SRF:1.17304855937;SOX5:1.06901119391;HMX1:1.06014463889;FOXO1,3,4:1.03958513299;HMGA1,2:1.02888035753;TP53:0.927398442601;PAX1,9:0.920454192344;TAL1_TCF{3,4,12}:0.918282511218;XBP1:0.91732193583;HES1:0.879036432044;RXRA_VDR{dimer}:0.876450970524;NKX3-2:0.844314835749;HIF1A:0.833877162315;NKX6-1,2:0.823478243384;TEAD1:0.815018046745;GATA4:0.814192052655;BPTF:0.797063780625;EN1,2:0.795608856019;GFI1B:0.77010012721;TFAP4:0.747066787732;ZBTB16:0.70538819121;GLI1..3:0.656150529261;TLX1..3_NFIC{dimer}:0.60720761387;MYBL2:0.568378472602;DBP:0.551713459642;ZIC1..3:0.472577425121;HOX{A5,B5}:0.457131052685;PAX5:0.441752721702;bHLH_family:0.42119739084;NANOG{mouse}:0.407219792276;TOPORS:0.391574192669;TFCP2:0.380579858408;DMAP1_NCOR{1,2}_SMARC:0.377979693673;HAND1,2:0.377970968794;HSF1,2:0.370543913131;HOX{A4,D4}:0.347712351301;NHLH1,2:0.341818920223;NFIX:0.338242871401;ZBTB6:0.330104014263;STAT2,4,6:0.324381710775;ZNF384:0.324330562916;YY1:0.320357822029;FOX{I1,J2}:0.320222428675;PRDM1:0.297640963988;IKZF1:0.295924499827;PATZ1:0.292810525184;MZF1:0.278675619254;ESRRA:0.277636270812;GTF2I:0.271555767703;IRF1,2:0.25744220469;GTF2A1,2:0.253073429224;AR:0.24594863635;NR6A1:0.224881606979;MAFB:0.221147987839;NR1H4:0.218359512599;HOX{A6,A7,B6,B7}:0.21751536105;FOX{D1,D2}:0.202104181729;FOXP3:0.186737623581;TBP:0.184729598747;AHR_ARNT_ARNT2:0.159841168406;TFAP2{A,C}:0.15921547213;ELK1,4_GABP{A,B1}:0.132410968916;HLF:0.113973619702;SOX17:0.111322053512;LHX3,4:0.0827985442566;MYFfamily:0.069280146463;NFE2L2:0.0559712453006;MTF1:0.0498601704687;ARID5B:0.0439720896153;MAZ:0.0329920369675;MEF2{A,B,C,D}:0.0326867278871;STAT1,3:0.0233153818639;LEF1_TCF7_TCF7L1,2:0.0229060618701;CEBPA,B_DDIT3:0.0171913725439;ZNF423:0.0171254294755;SPZ1:-0.0123952270008;RUNX1..3:-0.0170513698534;HNF4A_NR2F1,2:-0.0390721785903;STAT5{A,B}:-0.0443282425302;MED-1{core}:-0.053090487771;HNF1A:-0.0783896588876;RFX1:-0.0842566133374;GCM1,2:-0.0926189913482;BACH2:-0.0989303347493;IKZF2:-0.102320415967;RREB1:-0.105143189783;REST:-0.12220910802;CDX1,2,4:-0.138025000343;NFKB1_REL_RELA:-0.139434154158;PRRX1,2:-0.153702367639;NFE2:-0.161776876322;SMAD1..7,9:-0.203802392554;TGIF1:-0.212423181153;PAX8:-0.213650499704;FOS_FOS{B,L1}_JUN{B,D}:-0.229261767655;ATF5_CREB3:-0.233015956734;HIC1:-0.234510911276;ZNF148:-0.252013616464;PAX4:-0.259777740273;SP1:-0.275052231316;HBP1_HMGB_SSRP1_UBTF:-0.302336941419;RFX2..5_RFXANK_RFXAP:-0.303919890128;TFAP2B:-0.304275853711;POU3F1..4:-0.304812702798;CREB1:-0.30816818061;TEF:-0.351991933366;ZNF143:-0.353230429379;MTE{core}:-0.366102018114;NFIL3:-0.381419822091;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.386664392741;XCPE1{core}:-0.393503156694;TBX4,5:-0.393999847505;EGR1..3:-0.394736125354;ATF4:-0.399090460753;TFDP1:-0.400863937081;JUN:-0.408237225581;T:-0.413241906483;IRF7:-0.422084099946;ONECUT1,2:-0.42547012987;NKX2-3_NKX2-5:-0.42629708561;PAX3,7:-0.434479764968;ELF1,2,4:-0.442610906968;FOSL2:-0.455460916448;SPI1:-0.465462671768;SREBF1,2:-0.465664301279;POU6F1:-0.484377737957;FOXN1:-0.489097507206;ETS1,2:-0.493550345636;RORA:-0.511390453018;NRF1:-0.521793949936;RBPJ:-0.556193753912;GFI1:-0.559018479287;ZFP161:-0.572641195137;HOXA9_MEIS1:-0.589313492134;FOXP1:-0.599082148307;SPIB:-0.634577162017;MYB:-0.650817710017;ATF2:-0.68558056051;FOXA2:-0.694105995994;POU2F1..3:-0.700021647676;PBX1:-0.705005077435;CUX2:-0.712971924193;PAX2:-0.728375800014;CDC5L:-0.756553950667;PITX1..3:-0.803505206286;ADNP_IRX_SIX_ZHX:-0.86880358408;GATA6:-0.88505097019;TLX2:-0.899051020635;FOXQ1:-0.9195730714;PDX1:-0.942616945128;CRX:-0.95341737437;BREu{core}:-0.954295103159;E2F1..5:-0.964914945027;FOXM1:-0.966192009841;SNAI1..3:-0.99226673594;ALX1:-0.99523678645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.99565494363;POU1F1:-1.05431496433;NFY{A,B,C}:-1.06516377002;FOX{F1,F2,J1}:-1.07481903262;LMO2:-1.13885549929;SOX2:-1.15298368107;NANOG:-1.1810765651;POU5F1:-1.20949953159;EP300:-1.26689894255;ZEB1:-1.28955644521;OCT4_SOX2{dimer}:-1.29265179238;PAX6:-1.30921707725;SOX{8,9,10}:-1.46285137985;MYOD1:-1.57861093451;NR5A1,2:-1.68340747124;PPARG:-1.88360863137;VSX1,2:-2.00327298243 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11504-119G1;search_select_hide=table117:FF:11504-119G1 | |||
}} | }} |
Latest revision as of 18:04, 4 June 2020
Name: | Hair Follicle Outer Root Sheath Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12339 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12339
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12339
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.695 |
10 | 10 | 0.059 |
100 | 100 | 0.62 |
101 | 101 | 0.723 |
102 | 102 | 0.0474 |
103 | 103 | 0.0941 |
104 | 104 | 0.404 |
105 | 105 | 0.35 |
106 | 106 | 0.119 |
107 | 107 | 0.202 |
108 | 108 | 0.31 |
109 | 109 | 0.237 |
11 | 11 | 0.893 |
110 | 110 | 0.404 |
111 | 111 | 0.777 |
112 | 112 | 0.363 |
113 | 113 | 0.164 |
114 | 114 | 0.0739 |
115 | 115 | 0.853 |
116 | 116 | 0.0337 |
117 | 117 | 0.202 |
118 | 118 | 0.927 |
119 | 119 | 0.79 |
12 | 12 | 0.337 |
120 | 120 | 0.199 |
121 | 121 | 0.448 |
122 | 122 | 0.00301 |
123 | 123 | 0.00275 |
124 | 124 | 0.617 |
125 | 125 | 0.988 |
126 | 126 | 0.699 |
127 | 127 | 0.841 |
128 | 128 | 0.112 |
129 | 129 | 0.37 |
13 | 13 | 0.994 |
130 | 130 | 0.853 |
131 | 131 | 0.86 |
132 | 132 | 0.23 |
133 | 133 | 0.897 |
134 | 134 | 0.581 |
135 | 135 | 0.848 |
136 | 136 | 0.396 |
137 | 137 | 0.109 |
138 | 138 | 0.972 |
139 | 139 | 0.514 |
14 | 14 | 0.377 |
140 | 140 | 0.426 |
141 | 141 | 0.508 |
142 | 142 | 0.859 |
143 | 143 | 0.882 |
144 | 144 | 0.226 |
145 | 145 | 0.324 |
146 | 146 | 0.969 |
147 | 147 | 0.259 |
148 | 148 | 0.395 |
149 | 149 | 0.0342 |
15 | 15 | 0.473 |
150 | 150 | 0.473 |
151 | 151 | 0.678 |
152 | 152 | 0.157 |
153 | 153 | 0.115 |
154 | 154 | 0.358 |
155 | 155 | 0.14 |
156 | 156 | 0.318 |
157 | 157 | 0.727 |
158 | 158 | 0.116 |
159 | 159 | 0.652 |
16 | 16 | 0.0358 |
160 | 160 | 0.122 |
161 | 161 | 0.538 |
162 | 162 | 0.357 |
163 | 163 | 0.396 |
164 | 164 | 0.0441 |
165 | 165 | 0.916 |
166 | 166 | 0.537 |
167 | 167 | 0.862 |
168 | 168 | 0.801 |
169 | 169 | 0.0363 |
17 | 17 | 0.492 |
18 | 18 | 0.343 |
19 | 19 | 0.0139 |
2 | 2 | 0.703 |
20 | 20 | 0.747 |
21 | 21 | 0.166 |
22 | 22 | 0.156 |
23 | 23 | 0.385 |
24 | 24 | 0.975 |
25 | 25 | 0.369 |
26 | 26 | 0.0165 |
27 | 27 | 0.551 |
28 | 28 | 0.238 |
29 | 29 | 0.0538 |
3 | 3 | 0.0454 |
30 | 30 | 0.796 |
31 | 31 | 0.947 |
32 | 32 | 8.45585e-8 |
33 | 33 | 0.272 |
34 | 34 | 0.438 |
35 | 35 | 0.522 |
36 | 36 | 0.66 |
37 | 37 | 0.0153 |
38 | 38 | 0.658 |
39 | 39 | 0.484 |
4 | 4 | 0.0376 |
40 | 40 | 0.477 |
41 | 41 | 0.564 |
42 | 42 | 0.663 |
43 | 43 | 0.474 |
44 | 44 | 0.734 |
45 | 45 | 0.49 |
46 | 46 | 0.0901 |
47 | 47 | 0.994 |
48 | 48 | 0.768 |
49 | 49 | 0.643 |
5 | 5 | 0.819 |
50 | 50 | 0.592 |
51 | 51 | 0.805 |
52 | 52 | 0.82 |
53 | 53 | 0.155 |
54 | 54 | 0.77 |
55 | 55 | 3.31546e-4 |
56 | 56 | 0.62 |
57 | 57 | 0.868 |
58 | 58 | 0.435 |
59 | 59 | 0.199 |
6 | 6 | 0.829 |
60 | 60 | 0.77 |
61 | 61 | 0.639 |
62 | 62 | 0.813 |
63 | 63 | 0.335 |
64 | 64 | 0.332 |
65 | 65 | 0.369 |
66 | 66 | 0.263 |
67 | 67 | 0.613 |
68 | 68 | 0.467 |
69 | 69 | 0.454 |
7 | 7 | 0.26 |
70 | 70 | 0.114 |
71 | 71 | 0.0742 |
72 | 72 | 0.872 |
73 | 73 | 0.0154 |
74 | 74 | 0.35 |
75 | 75 | 0.19 |
76 | 76 | 0.432 |
77 | 77 | 0.157 |
78 | 78 | 0.829 |
79 | 79 | 0.0464 |
8 | 8 | 0.238 |
80 | 80 | 0.139 |
81 | 81 | 0.939 |
82 | 82 | 0.651 |
83 | 83 | 0.525 |
84 | 84 | 0.111 |
85 | 85 | 0.0661 |
86 | 86 | 0.838 |
87 | 87 | 0.733 |
88 | 88 | 0.106 |
89 | 89 | 0.155 |
9 | 9 | 0.599 |
90 | 90 | 0.363 |
91 | 91 | 0.806 |
92 | 92 | 0.0373 |
93 | 93 | 0.146 |
94 | 94 | 0.458 |
95 | 95 | 0.126 |
96 | 96 | 0.951 |
97 | 97 | 0.991 |
98 | 98 | 0.58 |
99 | 99 | 0.00193 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12339
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002559 (hair follicle cell)
0002561 (outer root sheath cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0005933 (hair root sheath)
0005942 (hair outer root sheath)
0002416 (integumental system)
0005932 (bulb of hair follicle)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000075 (human outer root sheath cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)