FF:12233-129G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005507 | |||
|accession_numbers=CAGE;DRX008087;DRR008959;DRZ000384;DRZ001769;DRZ011734;DRZ013119 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.31!205.25!IRF8;;chr3:12330560..12330579,+!p1@PPARG!2.25!202.49!PPARG;;chr19:45971246..45971265,+!p1@FOSB!2.24!3001.88!FOSB;;chr7:73038839..73038862,-!p1@MLXIPL!2.21!162.67!MLXIPL;;chr19:33793430..33793447,-!p1@CEBPA!2.12!525.69!CEBPA;;chr9:110252035..110252057,-!p1@KLF4!1.96!1347.00!KLF4;;chr15:42749722..42749739,-!p2@ZFP106!1.90!138.16!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.81!90.07!ZBTB16;;chr14:75745523..75745537,+!p1@FOS!1.80!6876.23!FOS;;chr8:55370487..55370503,+!p1@SOX17!1.70!48.71!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.68!47.18!PPARG;;chr3:150126101..150126118,+!p6@TSC22D2!1.64!68.01!TSC22D2;;chr5:158526917..158526932,-!p1@EBF1!1.62!98.34!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.61!50.85!NFATC2;;chr6:19837592..19837621,+!p1@ID4!1.57!212.91!ID4;;chr9:1050331..1050363,+!p1@DMRT2!1.57!35.84!DMRT2;;chr10:63808574..63808584,+!p27@ARID5B!1.57!35.84!ARID5B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.84!ZBED1;;chr9:77112244..77112262,+!p1@RORB!1.55!38.60!RORB;;chr10:63809013..63809041,+!p3@ARID5B!1.52!172.78!ARID5B;;chr8:10588010..10588030,-!p1@SOX7!1.52!32.47!SOX7;;chr3:12392932..12392962,+!p8@PPARG!1.50!30.94!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.48!758.82!ATF3;;chr7:19157248..19157268,-!p1@TWIST1!1.48!78.42!TWIST1;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.80!ZNF385A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.71!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.30!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.39!29.10!KLF15;;chr11:113930401..113930422,+!p3@ZBTB16!1.38!22.98!ZBTB16;;chr13:41240717..41240735,-!p2@FOXO1!1.36!143.98!FOXO1;;chr17:40440481..40440550,+!p1@STAT5A!1.35!148.27!STAT5A;;chr1:61548225..61548299,+!p1@NFIA!1.33!259.47!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!1.33!45.65!NR1H3;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.85!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!1.32!25.12!SOX5;;chr17:53342311..53342400,+!p1@HLF!1.31!22.06!HLF;;chr15:90294062..90294079,-!p2@MESP1!1.31!19.30!MESP1;;chr3:187463179..187463201,-!p2@BCL6!1.30!76.28!BCL6;;chr18:77155922..77155939,+!p1@NFATC1!1.29!50.24!NFATC1;;chr19:12902289..12902307,+!p1@JUNB!1.28!3991.68!JUNB;;chr17:17726907..17726958,-!p2@SREBF1!1.28!109.98!SREBF1;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.50!PPARG;;chrX:66763856..66763896,+!p1@AR!1.28!26.04!AR;;chr21:39870339..39870443,-!p1@ERG!1.28!18.07!ERG;;chr10:45495946..45495976,+!p2@ZNF22!1.28!18.07!ZNF22;;chr1:59249707..59249727,-!p1@JUN!1.27!723.59!JUN;;chr11:113930291..113930339,+!p2@ZBTB16!1.27!28.80!ZBTB16;;chr5:137801160..137801176,+!p1@EGR1!1.25!1607.40!EGR1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.49!TWIST2;;chr7:73038867..73038878,-!p2@MLXIPL!1.25!16.85!MLXIPL;;chr13:41240737..41240787,-!p1@FOXO1!1.24!189.32!FOXO1;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr10:63809106..63809127,+!p1@ARID5B!1.22!206.17!ARID5B;;chr3:39195075..39195088,-!p1@CSRNP1!1.22!95.27!CSRNP1;;chr5:131826457..131826514,-!p1@IRF1!1.21!580.22!IRF1;;chr1:59249688..59249703,-!p3@JUN!1.21!89.76!JUN;;chr2:43454125..43454146,-!p2@ZFP36L2!1.21!15.32!ZFP36L2;;chr10:63809077..63809089,+!p5@ARID5B!1.20!32.17!ARID5B;;chrX:66763914..66763933,+!p3@AR!1.20!14.70!AR;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!379.87!TSC22D3;;chr20:39317868..39317884,-!p1@MAFB!1.19!168.49!MAFB;;chr7:19157043..19157088,-!p2@TWIST1!1.19!35.84!TWIST1;;chr8:48650715..48650735,-!p1@CEBPD!1.18!1757.20!CEBPD;;chr2:145271342..145271377,-!p5@ZEB2!1.18!14.09!ZEB2;;chr2:145274900..145274934,-!p4@ZEB2!1.16!82.41!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.16!13.48!PLEK;;chr14:21566731..21566836,-!p1@ZNF219!1.15!137.86!ZNF219;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.36!NCOA4;;chr8:128748470..128748487,+!p1@MYC!1.14!1401.53!MYC;;chr14:35873947..35873965,-!p1@NFKBIA!1.14!808.75!NFKBIA;;chr17:40540591..40540600,-!p3@STAT3!1.13!12.56!STAT3;;chr6:152128810..152128827,+!p2@ESR1!1.13!12.56!ESR1;;chr19:16435625..16435682,+!p1@KLF2!1.12!393.35!KLF2;;chr1:61548374..61548415,+!p4@NFIA!1.12!22.67!NFIA;;chr1:119530493..119530572,-!p1@TBX15!1.12!12.25!TBX15;;chr22:41763452..41763466,+!p2@TEF!1.12!12.25!TEF;;chr3:12393032..12393047,+!p15@PPARG!1.11!11.95!PPARG;;chr19:18392422..18392440,-!p1@JUND!1.10!1599.43!JUND;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.93!BHLHE41;;chr22:38598086..38598105,+!p1@MAFF!1.09!119.47!MAFF;;chr6:126240380..126240430,+!p2@NCOA7!1.08!29.10!NCOA7;;chr2:145277882..145277967,-!p3@ZEB2!1.08!18.99!ZEB2;;chr1:59249732..59249749,-!p2@JUN!1.07!129.58!JUN;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.72!HOXC9;;chr5:137804405..137804444,+!p3@EGR1!1.05!12.25!EGR1;;chr5:2751762..2751784,-!p1@IRX2!1.05!10.11!IRX2;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.11!HOXA3;;chr14:61116183..61116208,-!p1@SIX1!1.04!37.99!SIX1;;chr19:16435523..16435619,+!p2@KLF2!1.04!14.09!KLF2;;chr2:10091815..10091864,+!p1@GRHL1!1.04!13.17!GRHL1;;chr10:63808979..63808990,+!p8@ARID5B!1.04!11.03!ARID5B;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.79!KLF15;;chr15:90294087..90294115,-!p1@MESP1!1.03!9.80!MESP1;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.80!HOXA7;;chr10:8096772..8096787,+!p2@GATA3!1.02!11.33!GATA3;;chrX:131623044..131623089,-!p1@MBNL3!1.01!39.21!MBNL3;;chr5:137804357..137804390,+!p4@EGR1!1.01!11.03!EGR1;;chr10:3824576..3824590,-!p21@KLF6!1.01!9.19!KLF6;;chr10:45495898..45495907,+!p8@ZNF22!1.01!9.19!ZNF22;;chr14:35872453..35872485,-!p2@NFKBIA!1.00!22.67!NFKBIA;;chr3:24536253..24536328,-!p1@THRB!1.00!17.46!THRB;;chr8:81397820..81397836,+!p2@ZBTB10!1.00!11.33!ZBTB10;;chr17:38256799..38256815,-!p3@NR1D1!0.99!15.93!NR1D1;;chr3:187455486..187455504,-!p6@BCL6!0.99!8.88!BCL6;;chr19:13106214..13106382,+!p1@NFIX!0.98!201.58!NFIX;;chr8:81397846..81397860,+!p3@ZBTB10!0.98!10.72!ZBTB10;;chr12:54402745..54402788,+!p1@HOXC8!0.98!8.58!HOXC8;;chr1:161736038..161736056,+!p4@ATF6!0.97!19.91!ATF6;;chr3:114477934..114477961,-!p14@ZBTB20!0.97!8.27!ZBTB20;;chr22:38597987..38598021,+!p2@MAFF!0.96!51.16!MAFF;;chr9:73029219..73029289,-!p2@KLF9!0.96!25.12!KLF9;;chr2:46524537..46524553,+!p1@EPAS1!0.95!801.40!EPAS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!427.35!NFKBIZ;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.84!ZBTB20;;chr12:72056800..72056834,+!p1@THAP2!0.95!10.72!THAP2;;chr1:164528410..164528428,+!p1@PBX1!0.94!60.66!PBX1;;chr3:39195037..39195069,-!p2@CSRNP1!0.94!49.32!CSRNP1;;chr2:28618532..28618610,+!p4@FOSL2!0.94!13.48!FOSL2;;chr20:51588873..51588953,+!p1@TSHZ2!0.94!10.42!TSHZ2;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.58!NR1D1;;chr1:61548069..61548102,+!p3@NFIA!0.93!18.69!NFIA;;chr6:106546808..106546833,+!p3@PRDM1!0.93!9.50!PRDM1;;chr3:150126065..150126097,+!p1@TSC22D2!0.92!65.56!TSC22D2;;chr14:21566882..21566898,-!p3@ZNF219!0.92!11.03!ZNF219;;chr20:6748325..6748352,+!p1@BMP2!0.92!10.72!BMP2;;chr9:77112225..77112238,+!p2@RORB!0.92!7.35!RORB;;chr5:158524951..158524969,-!p15@EBF1!0.92!7.35!EBF1;;chr16:67198633..67198671,+!p1@HSF4!0.92!7.35!HSF4;;chr17:40440359..40440386,+!p4@STAT5A!0.92!7.35!STAT5A;;chr17:40440446..40440464,+!p5@STAT5A!0.92!7.35!STAT5A;;chr18:45935720..45935772,-!p1@ZBTB7C!0.92!7.35!ZBTB7C;;chr9:73028814..73028895,-!p1@KLF9!0.91!73.22!KLF9;;chr2:145275162..145275202,-!p2@ZEB2!0.91!44.11!ZEB2;;chr3:114477832..114477843,-!p25@ZBTB20!0.91!7.05!ZBTB20;;chr9:14314476..14314487,-!p9@NFIB!0.91!7.05!NFIB;;chr12:52437488..52437507,+!p2@NR4A1!0.91!7.05!NR4A1;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.05!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.05!EBF2;;chr2:61108695..61108753,+!p1@REL!0.90!50.55!REL;;chr3:69788576..69788648,+!p1@MITF!0.90!38.60!MITF;;chrX:66763815..66763854,+!p2@AR!0.90!9.19!AR;;chr7:113726357..113726443,+!p1@FOXP2!0.89!11.95!FOXP2;;chr19:12476443..12476467,-!p1@ZNF442!0.89!11.33!ZNF442;;chr1:23696348..23696363,-!p4@ZNF436!0.89!7.66!ZNF436;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.89!6.74!HOXC5;;chr5:158526459..158526481,-!p2@EBF1!0.88!8.88!EBF1;;chr9:94186131..94186174,-!p2@NFIL3!0.87!56.37!NFIL3;;chr8:106330656..106330684,+!p1@ZFPM2!0.87!17.77!ZFPM2;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.96!THAP3;;chr7:73038889..73038905,-!p3@MLXIPL!0.87!6.43!MLXIPL;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.88!HOXB7;;chr2:43453734..43453751,-!p1@ZFP36L2!0.85!692.03!ZFP36L2;;chr2:97202480..97202499,+!p1@ARID5A!0.85!65.56!ARID5A;;chr22:41777927..41777971,+!p1@TEF!0.85!54.53!TEF;;chr14:89883509..89883587,-!p2@FOXN3!0.85!44.73!FOXN3;;chr4:87928353..87928401,+!p4@AFF1!0.85!28.80!AFF1;;chr6:108881012..108881034,+!p3@FOXO3!0.85!22.98!FOXO3;;chr7:27213893..27213954,-!p1@HOXA10!0.85!6.13!HOXA10;;chr3:12392972..12392983,+!p16@PPARG!0.85!6.13!PPARG;;chr3:21792682..21792720,-!p1@ZNF385D!0.85!6.13!ZNF385D;;chr17:40429090..40429125,-!p3@STAT5B!0.85!6.13!STAT5B;;chr17:7197911..7197964,-!p1@YBX2!0.85!6.13!YBX2;;chrX:66765139..66765146,+!p5@AR!0.85!6.13!AR;;chr12:54393880..54393962,+!p1@HOXC9!0.85!6.13!HOXC9;;chr20:48807351..48807384,+!p1@CEBPB!0.84!640.87!CEBPB;;chr7:64467057..64467078,-!p1@ZNF117!0.84!119.17!ZNF117;;chr9:94186101..94186122,-!p1@NFIL3!0.84!87.31!NFIL3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.66!FOS;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.80!KLF4;;chrX:56258844..56258882,+!p1@KLF8!0.83!8.27!KLF8;;chr5:158527020..158527029,-!p13@EBF1!0.83!5.82!EBF1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.82!ZNF727;;chr17:41739283..41739297,-!p1@MEOX1!0.83!5.82!MEOX1;;chr17:46690839..46690884,-!p1@HOXB8!0.83!5.82!HOXB8;;chr10:3827389..3827408,-!p1@KLF6!0.82!460.44!KLF6;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.46!RFX2;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.67!TSC22D3;;chr13:27998854..27998866,+!p3@GTF3A!0.82!11.95!GTF3A;;chr7:137686552..137686564,-!p9@CREB3L2!0.82!8.58!CREB3L2;;chrX:107018969..107019024,-!p6@TSC22D3!0.82!7.96!TSC22D3;;chr8:72756637..72756664,-!p3@MSC!0.82!6.43!MSC;;chr10:114710098..114710130,+!p2@TCF7L2!0.81!44.42!TCF7L2;;chr8:72756667..72756736,-!p2@MSC!0.81!8.88!MSC;;chr1:61924375..61924380,+!p6@NFIA!0.81!7.96!NFIA;;chr19:46801639..46801699,+!p1@HIF3A!0.81!5.51!HIF3A;;chr10:63808512..63808517,+!p54@A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BF1!0.28!0.92!EBF1;;chr5:158523468..158523481,-!p20@EBF1!0.28!0.92!EBF1;;chr5:158526693..158526706,-!p8@EBF1!0.28!0.92!EBF1;;chr5:3595977..3595999,+!p1@IRX1!0.28!0.92!IRX1;;chr5:71803177..71803255,-!p1@ZNF366!0.28!0.92!ZNF366;;chr5:76382989..76383001,-!p4@ZBED3!0.28!0.92!ZBED3;;chr7:149471046..149471070,-!p4@ZNF467!0.28!0.92!ZNF467;;chr8:103668114..103668134,-!p5@KLF10!0.28!0.92!KLF10;;chr8:81787006..81787031,-!p2@ZNF704!0.28!0.92!ZNF704;;chr19:45974146..45974170,+!p7@FOSB!0.28!0.92!FOSB;;chr19:45977697..45977713,+!p4@FOSB!0.28!0.92!FOSB;;chr19:49140255..49140268,-!p9@DBP!0.28!0.92!DBP;;chr19:49140692..49140709,-!p5@DBP!0.28!0.92!DBP;;chr19:6110458..6110472,-!p3@RFX2!0.28!0.92!RFX2;;chr1:165394215..165394226,-!p8@RXRG!0.28!0.92!RXRG;;chr1:170632137..170632172,+!p10@PRRX1!0.28!0.92!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.28!0.92!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.28!0.92!BATF3;;chr1:23694532..23694549,-!p8@ZNF436!0.28!0.92!ZNF436;;chr1:59250262..59250296,-!p5@JUN!0.28!0.92!JUN;;chr1:61547405..61547434,+!p11@NFIA!0.28!0.92!NFIA;;chr11:113933924..113933957,+!p10@ZBTB16!0.28!0.92!ZBTB16;;chr11:125034605..125034636,+!p2@PKNOX2!0.28!0.92!PKNOX2;;chr11:12696102..12696113,+!p5@TEAD1!0.28!0.92!TEAD1;;chr11:34663913..34663945,+!p6@EHF!0.28!0.92!EHF;;chr12:26277994..26278001,-!p6@BHLHE41!0.28!0.92!BHLHE41;;chr12:45444873..45444888,-!p1@DBX2!0.28!0.92!DBX2;;chr12:52448213..52448262,+!p6@NR4A1!0.28!0.92!NR4A1;;chr12:54394059..54394088,+!p3@HOXC9!0.28!0.92!HOXC9;;chr12:57914700..57914737,+!p7@MBD6!0.28!0.92!MBD6;;chr13:72441074..72441172,-!p2@DACH1!0.28!0.92!DACH1;;chr14:95236551..95236576,-!p2@GSC!0.28!0.92!GSC;;chr15:57210772..57210803,-!p7@ZNF280D!0.28!0.92!ZNF280D;;chr16:1429010..1429038,-!p5@UNKL!0.28!0.92!UNKL;;chr16:49698178..49698209,-!p1@ZNF423!0.28!0.92!ZNF423;;chr16:73082542..73082574,-!p11@ZFHX3!0.28!0.92!ZFHX3;;chr17:38256590..38256599,-!p8@NR1D1!0.28!0.92!NR1D1;;chr17:40428334..40428345,-!p2@STAT5B!0.28!0.92!STAT5B;;chr17:45810594..45810608,+!p1@TBX21!0.28!0.92!TBX21;;chr17:59529743..59529798,+!p1@TBX4!0.28!0.92!TBX4;;chr19:12405588..12405595,-!p4@ZNF44!0.28!0.92!ZNF44;;chr19:13135914..13135942,+!p19@NFIX!0.28!0.92!NFIX;;chr19:16435705..16435726,+!p3@KLF2!0.28!0.92!KLF2;;chr19:24216347..24216356,+!p7@ZNF254!0.28!0.92!ZNF254;;chr21:47063590..47063597,+!p2@PCBP3!0.28!0.92!PCBP3;;chr2:10091783..10091811,+!p2@GRHL1!0.28!0.92!GRHL1;;chr2:145275982..145276003,-!p7@ZEB2!0.28!0.92!ZEB2;;chr2:208394455..208394471,+!p7@CREB1!0.28!0.92!CREB1;;chr2:214016899..214016926,-!p10@IKZF2!0.28!0.92!IKZF2;;chr2:223163706..223163730,-!p1@PAX3!0.28!0.92!PAX3;;chr2:45236540..45236577,-!p1@SIX2!0.28!0.92!SIX2;;chr3:114173720..114173794,-!p6@ZBTB20!0.28!0.92!ZBTB20;;chr3:114819101..114819121,-!p7@ZBTB20!0.28!0.92!ZBTB20;;chr3:12329339..12329356,+!p5@PPARG!0.28!0.92!PPARG;;chr3:126072967..126072981,-!p4@KLF15!0.28!0.92!KLF15;;chr3:141105235..141105307,+!p7@ZBTB38!0.28!0.92!ZBTB38;;chr3:141868189..141868200,-!p9@TFDP2!0.28!0.92!TFDP2;;chr3:21792790..21792824,-!p4@ZNF385D!0.28!0.92!ZNF385D;;chr3:24536231..24536249,-!p4@THRB!0.28!0.92!THRB;;chr3:24536516..24536545,-!p6@THRB!0.28!0.92!THRB;;chr3:5022272..5022321,+!p7@BHLHE40!0.28!0.92!BHLHE40;;chr3:63953435..63953499,+!p1@ATXN7!0.28!0.92!ATXN7;;chr4:103498623..103498650,+!p9@NFKB1!0.28!0.92!NFKB1;;chr4:174450089..174450153,-!p2@HAND2!0.28!0.92!HAND2;;chr4:174451370..174451387,-!p1@HAND2!0.28!0.92!HAND2;; | |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.31!205.25!IRF8;;chr3:12330560..12330579,+!p1@PPARG!2.25!202.49!PPARG;;chr19:45971246..45971265,+!p1@FOSB!2.24!3001.88!FOSB;;chr7:73038839..73038862,-!p1@MLXIPL!2.21!162.67!MLXIPL;;chr19:33793430..33793447,-!p1@CEBPA!2.12!525.69!CEBPA;;chr9:110252035..110252057,-!p1@KLF4!1.96!1347.00!KLF4;;chr15:42749722..42749739,-!p2@ZFP106!1.90!138.16!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.81!90.07!ZBTB16;;chr14:75745523..75745537,+!p1@FOS!1.80!6876.23!FOS;;chr8:55370487..55370503,+!p1@SOX17!1.70!48.71!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.68!47.18!PPARG;;chr3:150126101..150126118,+!p6@TSC22D2!1.64!68.01!TSC22D2;;chr5:158526917..158526932,-!p1@EBF1!1.62!98.34!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.61!50.85!NFATC2;;chr6:19837592..19837621,+!p1@ID4!1.57!212.91!ID4;;chr9:1050331..1050363,+!p1@DMRT2!1.57!35.84!DMRT2;;chr10:63808574..63808584,+!p27@ARID5B!1.57!35.84!ARID5B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.84!ZBED1;;chr9:77112244..77112262,+!p1@RORB!1.55!38.60!RORB;;chr10:63809013..63809041,+!p3@ARID5B!1.52!172.78!ARID5B;;chr8:10588010..10588030,-!p1@SOX7!1.52!32.47!SOX7;;chr3:12392932..12392962,+!p8@PPARG!1.50!30.94!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.48!758.82!ATF3;;chr7:19157248..19157268,-!p1@TWIST1!1.48!78.42!TWIST1;;chr12:54779511..54779577,-!p5@ZNF385A!1.47!28.80!ZNF385A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.71!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.30!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.39!29.10!KLF15;;chr11:113930401..113930422,+!p3@ZBTB16!1.38!22.98!ZBTB16;;chr13:41240717..41240735,-!p2@FOXO1!1.36!143.98!FOXO1;;chr17:40440481..40440550,+!p1@STAT5A!1.35!148.27!STAT5A;;chr1:61548225..61548299,+!p1@NFIA!1.33!259.47!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!1.33!45.65!NR1H3;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.85!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!1.32!25.12!SOX5;;chr17:53342311..53342400,+!p1@HLF!1.31!22.06!HLF;;chr15:90294062..90294079,-!p2@MESP1!1.31!19.30!MESP1;;chr3:187463179..187463201,-!p2@BCL6!1.30!76.28!BCL6;;chr18:77155922..77155939,+!p1@NFATC1!1.29!50.24!NFATC1;;chr19:12902289..12902307,+!p1@JUNB!1.28!3991.68!JUNB;;chr17:17726907..17726958,-!p2@SREBF1!1.28!109.98!SREBF1;;chr3:12329358..12329393,+!p3@PPARG!1.28!43.50!PPARG;;chrX:66763856..66763896,+!p1@AR!1.28!26.04!AR;;chr21:39870339..39870443,-!p1@ERG!1.28!18.07!ERG;;chr10:45495946..45495976,+!p2@ZNF22!1.28!18.07!ZNF22;;chr1:59249707..59249727,-!p1@JUN!1.27!723.59!JUN;;chr11:113930291..113930339,+!p2@ZBTB16!1.27!28.80!ZBTB16;;chr5:137801160..137801176,+!p1@EGR1!1.25!1607.40!EGR1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.49!TWIST2;;chr7:73038867..73038878,-!p2@MLXIPL!1.25!16.85!MLXIPL;;chr13:41240737..41240787,-!p1@FOXO1!1.24!189.32!FOXO1;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr10:63809106..63809127,+!p1@ARID5B!1.22!206.17!ARID5B;;chr3:39195075..39195088,-!p1@CSRNP1!1.22!95.27!CSRNP1;;chr5:131826457..131826514,-!p1@IRF1!1.21!580.22!IRF1;;chr1:59249688..59249703,-!p3@JUN!1.21!89.76!JUN;;chr2:43454125..43454146,-!p2@ZFP36L2!1.21!15.32!ZFP36L2;;chr10:63809077..63809089,+!p5@ARID5B!1.20!32.17!ARID5B;;chrX:66763914..66763933,+!p3@AR!1.20!14.70!AR;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!379.87!TSC22D3;;chr20:39317868..39317884,-!p1@MAFB!1.19!168.49!MAFB;;chr7:19157043..19157088,-!p2@TWIST1!1.19!35.84!TWIST1;;chr8:48650715..48650735,-!p1@CEBPD!1.18!1757.20!CEBPD;;chr2:145271342..145271377,-!p5@ZEB2!1.18!14.09!ZEB2;;chr2:145274900..145274934,-!p4@ZEB2!1.16!82.41!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.16!13.48!PLEK;;chr14:21566731..21566836,-!p1@ZNF219!1.15!137.86!ZNF219;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.36!NCOA4;;chr8:128748470..128748487,+!p1@MYC!1.14!1401.53!MYC;;chr14:35873947..35873965,-!p1@NFKBIA!1.14!808.75!NFKBIA;;chr17:40540591..40540600,-!p3@STAT3!1.13!12.56!STAT3;;chr6:152128810..152128827,+!p2@ESR1!1.13!12.56!ESR1;;chr19:16435625..16435682,+!p1@KLF2!1.12!393.35!KLF2;;chr1:61548374..61548415,+!p4@NFIA!1.12!22.67!NFIA;;chr1:119530493..119530572,-!p1@TBX15!1.12!12.25!TBX15;;chr22:41763452..41763466,+!p2@TEF!1.12!12.25!TEF;;chr3:12393032..12393047,+!p15@PPARG!1.11!11.95!PPARG;;chr19:18392422..18392440,-!p1@JUND!1.10!1599.43!JUND;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.93!BHLHE41;;chr22:38598086..38598105,+!p1@MAFF!1.09!119.47!MAFF;;chr6:126240380..126240430,+!p2@NCOA7!1.08!29.10!NCOA7;;chr2:145277882..145277967,-!p3@ZEB2!1.08!18.99!ZEB2;;chr1:59249732..59249749,-!p2@JUN!1.07!129.58!JUN;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.72!HOXC9;;chr5:137804405..137804444,+!p3@EGR1!1.05!12.25!EGR1;;chr5:2751762..2751784,-!p1@IRX2!1.05!10.11!IRX2;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.11!HOXA3;;chr14:61116183..61116208,-!p1@SIX1!1.04!37.99!SIX1;;chr19:16435523..16435619,+!p2@KLF2!1.04!14.09!KLF2;;chr2:10091815..10091864,+!p1@GRHL1!1.04!13.17!GRHL1;;chr10:63808979..63808990,+!p8@ARID5B!1.04!11.03!ARID5B;;chr3:126076264..126076305,-!p2@KLF15!1.03!13.79!KLF15;;chr15:90294087..90294115,-!p1@MESP1!1.03!9.80!MESP1;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.80!HOXA7;;chr10:8096772..8096787,+!p2@GATA3!1.02!11.33!GATA3;;chrX:131623044..131623089,-!p1@MBNL3!1.01!39.21!MBNL3;;chr5:137804357..137804390,+!p4@EGR1!1.01!11.03!EGR1;;chr10:3824576..3824590,-!p21@KLF6!1.01!9.19!KLF6;;chr10:45495898..45495907,+!p8@ZNF22!1.01!9.19!ZNF22;;chr14:35872453..35872485,-!p2@NFKBIA!1.00!22.67!NFKBIA;;chr3:24536253..24536328,-!p1@THRB!1.00!17.46!THRB;;chr8:81397820..81397836,+!p2@ZBTB10!1.00!11.33!ZBTB10;;chr17:38256799..38256815,-!p3@NR1D1!0.99!15.93!NR1D1;;chr3:187455486..187455504,-!p6@BCL6!0.99!8.88!BCL6;;chr19:13106214..13106382,+!p1@NFIX!0.98!201.58!NFIX;;chr8:81397846..81397860,+!p3@ZBTB10!0.98!10.72!ZBTB10;;chr12:54402745..54402788,+!p1@HOXC8!0.98!8.58!HOXC8;;chr1:161736038..161736056,+!p4@ATF6!0.97!19.91!ATF6;;chr3:114477934..114477961,-!p14@ZBTB20!0.97!8.27!ZBTB20;;chr22:38597987..38598021,+!p2@MAFF!0.96!51.16!MAFF;;chr9:73029219..73029289,-!p2@KLF9!0.96!25.12!KLF9;;chr2:46524537..46524553,+!p1@EPAS1!0.95!801.40!EPAS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!427.35!NFKBIZ;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.84!ZBTB20;;chr12:72056800..72056834,+!p1@THAP2!0.95!10.72!THAP2;;chr1:164528410..164528428,+!p1@PBX1!0.94!60.66!PBX1;;chr3:39195037..39195069,-!p2@CSRNP1!0.94!49.32!CSRNP1;;chr2:28618532..28618610,+!p4@FOSL2!0.94!13.48!FOSL2;;chr20:51588873..51588953,+!p1@TSHZ2!0.94!10.42!TSHZ2;;chr17:38256822..38256851,-!p1@NR1D1!0.93!61.58!NR1D1;;chr1:61548069..61548102,+!p3@NFIA!0.93!18.69!NFIA;;chr6:106546808..106546833,+!p3@PRDM1!0.93!9.50!PRDM1;;chr3:150126065..150126097,+!p1@TSC22D2!0.92!65.56!TSC22D2;;chr14:21566882..21566898,-!p3@ZNF219!0.92!11.03!ZNF219;;chr20:6748325..6748352,+!p1@BMP2!0.92!10.72!BMP2;;chr9:77112225..77112238,+!p2@RORB!0.92!7.35!RORB;;chr5:158524951..158524969,-!p15@EBF1!0.92!7.35!EBF1;;chr16:67198633..67198671,+!p1@HSF4!0.92!7.35!HSF4;;chr17:40440359..40440386,+!p4@STAT5A!0.92!7.35!STAT5A;;chr17:40440446..40440464,+!p5@STAT5A!0.92!7.35!STAT5A;;chr18:45935720..45935772,-!p1@ZBTB7C!0.92!7.35!ZBTB7C;;chr9:73028814..73028895,-!p1@KLF9!0.91!73.22!KLF9;;chr2:145275162..145275202,-!p2@ZEB2!0.91!44.11!ZEB2;;chr3:114477832..114477843,-!p25@ZBTB20!0.91!7.05!ZBTB20;;chr9:14314476..14314487,-!p9@NFIB!0.91!7.05!NFIB;;chr12:52437488..52437507,+!p2@NR4A1!0.91!7.05!NR4A1;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.05!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.05!EBF2;;chr2:61108695..61108753,+!p1@REL!0.90!50.55!REL;;chr3:69788576..69788648,+!p1@MITF!0.90!38.60!MITF;;chrX:66763815..66763854,+!p2@AR!0.90!9.19!AR;;chr7:113726357..113726443,+!p1@FOXP2!0.89!11.95!FOXP2;;chr19:12476443..12476467,-!p1@ZNF442!0.89!11.33!ZNF442;;chr1:23696348..23696363,-!p4@ZNF436!0.89!7.66!ZNF436;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.89!6.74!HOXC5;;chr5:158526459..158526481,-!p2@EBF1!0.88!8.88!EBF1;;chr9:94186131..94186174,-!p2@NFIL3!0.87!56.37!NFIL3;;chr8:106330656..106330684,+!p1@ZFPM2!0.87!17.77!ZFPM2;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.96!THAP3;;chr7:73038889..73038905,-!p3@MLXIPL!0.87!6.43!MLXIPL;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.88!HOXB7;;chr2:43453734..43453751,-!p1@ZFP36L2!0.85!692.03!ZFP36L2;;chr2:97202480..97202499,+!p1@ARID5A!0.85!65.56!ARID5A;;chr22:41777927..41777971,+!p1@TEF!0.85!54.53!TEF;;chr14:89883509..89883587,-!p2@FOXN3!0.85!44.73!FOXN3;;chr4:87928353..87928401,+!p4@AFF1!0.85!28.80!AFF1;;chr6:108881012..108881034,+!p3@FOXO3!0.85!22.98!FOXO3;;chr7:27213893..27213954,-!p1@HOXA10!0.85!6.13!HOXA10;;chr3:12392972..12392983,+!p16@PPARG!0.85!6.13!PPARG;;chr3:21792682..21792720,-!p1@ZNF385D!0.85!6.13!ZNF385D;;chr17:40429090..40429125,-!p3@STAT5B!0.85!6.13!STAT5B;;chr17:7197911..7197964,-!p1@YBX2!0.85!6.13!YBX2;;chrX:66765139..66765146,+!p5@AR!0.85!6.13!AR;;chr12:54393880..54393962,+!p1@HOXC9!0.85!6.13!HOXC9;;chr20:48807351..48807384,+!p1@CEBPB!0.84!640.87!CEBPB;;chr7:64467057..64467078,-!p1@ZNF117!0.84!119.17!ZNF117;;chr9:94186101..94186122,-!p1@NFIL3!0.84!87.31!NFIL3;;chr14:75746722..75746777,+!p2@FOS!0.84!7.66!FOS;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.80!KLF4;;chrX:56258844..56258882,+!p1@KLF8!0.83!8.27!KLF8;;chr5:158527020..158527029,-!p13@EBF1!0.83!5.82!EBF1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.82!ZNF727;;chr17:41739283..41739297,-!p1@MEOX1!0.83!5.82!MEOX1;;chr17:46690839..46690884,-!p1@HOXB8!0.83!5.82!HOXB8;;chr10:3827389..3827408,-!p1@KLF6!0.82!460.44!KLF6;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.46!RFX2;;chrX:106960180..106960197,-!p2@TSC22D3!0.82!22.67!TSC22D3;;chr13:27998854..27998866,+!p3@GTF3A!0.82!11.95!GTF3A;;chr7:137686552..137686564,-!p9@CREB3L2!0.82!8.58!CREB3L2;;chrX:107018969..107019024,-!p6@TSC22D3!0.82!7.96!TSC22D3;;chr8:72756637..72756664,-!p3@MSC!0.82!6.43!MSC;;chr10:114710098..114710130,+!p2@TCF7L2!0.81!44.42!TCF7L2;;chr8:72756667..72756736,-!p2@MSC!0.81!8.88!MSC;;chr1:61924375..61924380,+!p6@NFIA!0.81!7.96!NFIA;;chr19:46801639..46801699,+!p1@HIF3A!0.81!5.51!HIF3A;;chr10:63808512..63808517,+!p54@A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BF1!0.28!0.92!EBF1;;chr5:158523468..158523481,-!p20@EBF1!0.28!0.92!EBF1;;chr5:158526693..158526706,-!p8@EBF1!0.28!0.92!EBF1;;chr5:3595977..3595999,+!p1@IRX1!0.28!0.92!IRX1;;chr5:71803177..71803255,-!p1@ZNF366!0.28!0.92!ZNF366;;chr5:76382989..76383001,-!p4@ZBED3!0.28!0.92!ZBED3;;chr7:149471046..149471070,-!p4@ZNF467!0.28!0.92!ZNF467;;chr8:103668114..103668134,-!p5@KLF10!0.28!0.92!KLF10;;chr8:81787006..81787031,-!p2@ZNF704!0.28!0.92!ZNF704;;chr19:45974146..45974170,+!p7@FOSB!0.28!0.92!FOSB;;chr19:45977697..45977713,+!p4@FOSB!0.28!0.92!FOSB;;chr19:49140255..49140268,-!p9@DBP!0.28!0.92!DBP;;chr19:49140692..49140709,-!p5@DBP!0.28!0.92!DBP;;chr19:6110458..6110472,-!p3@RFX2!0.28!0.92!RFX2;;chr1:165394215..165394226,-!p8@RXRG!0.28!0.92!RXRG;;chr1:170632137..170632172,+!p10@PRRX1!0.28!0.92!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.28!0.92!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.28!0.92!BATF3;;chr1:23694532..23694549,-!p8@ZNF436!0.28!0.92!ZNF436;;chr1:59250262..59250296,-!p5@JUN!0.28!0.92!JUN;;chr1:61547405..61547434,+!p11@NFIA!0.28!0.92!NFIA;;chr11:113933924..113933957,+!p10@ZBTB16!0.28!0.92!ZBTB16;;chr11:125034605..125034636,+!p2@PKNOX2!0.28!0.92!PKNOX2;;chr11:12696102..12696113,+!p5@TEAD1!0.28!0.92!TEAD1;;chr11:34663913..34663945,+!p6@EHF!0.28!0.92!EHF;;chr12:26277994..26278001,-!p6@BHLHE41!0.28!0.92!BHLHE41;;chr12:45444873..45444888,-!p1@DBX2!0.28!0.92!DBX2;;chr12:52448213..52448262,+!p6@NR4A1!0.28!0.92!NR4A1;;chr12:54394059..54394088,+!p3@HOXC9!0.28!0.92!HOXC9;;chr12:57914700..57914737,+!p7@MBD6!0.28!0.92!MBD6;;chr13:72441074..72441172,-!p2@DACH1!0.28!0.92!DACH1;;chr14:95236551..95236576,-!p2@GSC!0.28!0.92!GSC;;chr15:57210772..57210803,-!p7@ZNF280D!0.28!0.92!ZNF280D;;chr16:1429010..1429038,-!p5@UNKL!0.28!0.92!UNKL;;chr16:49698178..49698209,-!p1@ZNF423!0.28!0.92!ZNF423;;chr16:73082542..73082574,-!p11@ZFHX3!0.28!0.92!ZFHX3;;chr17:38256590..38256599,-!p8@NR1D1!0.28!0.92!NR1D1;;chr17:40428334..40428345,-!p2@STAT5B!0.28!0.92!STAT5B;;chr17:45810594..45810608,+!p1@TBX21!0.28!0.92!TBX21;;chr17:59529743..59529798,+!p1@TBX4!0.28!0.92!TBX4;;chr19:12405588..12405595,-!p4@ZNF44!0.28!0.92!ZNF44;;chr19:13135914..13135942,+!p19@NFIX!0.28!0.92!NFIX;;chr19:16435705..16435726,+!p3@KLF2!0.28!0.92!KLF2;;chr19:24216347..24216356,+!p7@ZNF254!0.28!0.92!ZNF254;;chr21:47063590..47063597,+!p2@PCBP3!0.28!0.92!PCBP3;;chr2:10091783..10091811,+!p2@GRHL1!0.28!0.92!GRHL1;;chr2:145275982..145276003,-!p7@ZEB2!0.28!0.92!ZEB2;;chr2:208394455..208394471,+!p7@CREB1!0.28!0.92!CREB1;;chr2:214016899..214016926,-!p10@IKZF2!0.28!0.92!IKZF2;;chr2:223163706..223163730,-!p1@PAX3!0.28!0.92!PAX3;;chr2:45236540..45236577,-!p1@SIX2!0.28!0.92!SIX2;;chr3:114173720..114173794,-!p6@ZBTB20!0.28!0.92!ZBTB20;;chr3:114819101..114819121,-!p7@ZBTB20!0.28!0.92!ZBTB20;;chr3:12329339..12329356,+!p5@PPARG!0.28!0.92!PPARG;;chr3:126072967..126072981,-!p4@KLF15!0.28!0.92!KLF15;;chr3:141105235..141105307,+!p7@ZBTB38!0.28!0.92!ZBTB38;;chr3:141868189..141868200,-!p9@TFDP2!0.28!0.92!TFDP2;;chr3:21792790..21792824,-!p4@ZNF385D!0.28!0.92!ZNF385D;;chr3:24536231..24536249,-!p4@THRB!0.28!0.92!THRB;;chr3:24536516..24536545,-!p6@THRB!0.28!0.92!THRB;;chr3:5022272..5022321,+!p7@BHLHE40!0.28!0.92!BHLHE40;;chr3:63953435..63953499,+!p1@ATXN7!0.28!0.92!ATXN7;;chr4:103498623..103498650,+!p9@NFKB1!0.28!0.92!NFKB1;;chr4:174450089..174450153,-!p2@HAND2!0.28!0.92!HAND2;;chr4:174451370..174451387,-!p1@HAND2!0.28!0.92!HAND2;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor3.CNhs12560.12233-129G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12233-129G1 | |id=FF:12233-129G1 | ||
|is_a=EFO:0002091;;FF:0000266 | |is_a=EFO:0002091;;FF:0000266 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12560 | |||
|library_id_phase_based=2:CNhs12560 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12233 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12233 | |||
|name=mature adipocyte, donor3 | |name=mature adipocyte, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12560,LSID921,release012,COMPLETED | |profile_hcage=CNhs12560,LSID921,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=4.676 | |rna_weight_ug=4.676 | ||
|sample_age=64 | |sample_age=64 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=STAT2,4,6:3.2585286379;AR:2.88351654454;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.74350460994;ATF6:2.57311440402;ESRRA:2.44726669697;HBP1_HMGB_SSRP1_UBTF:2.40113841093;PDX1:2.26318420558;NFATC1..3:2.23665925019;RORA:2.23467480431;XBP1:2.20864274118;NFIL3:2.13094120909;STAT1,3:2.07639441405;FOXO1,3,4:1.88642901912;FOX{D1,D2}:1.8737798122;TFCP2:1.83956214024;ATF2:1.62037519435;NFE2L1:1.59708087817;TGIF1:1.58100939713;ZNF238:1.57302286227;GCM1,2:1.53821561658;IKZF1:1.48563195108;EP300:1.45102628016;DBP:1.43365743342;NFIX:1.42646837362;FOXL1:1.36047742776;SP1:1.35871330386;HNF4A_NR2F1,2:1.34887260461;SOX5:1.33788012605;TLX1..3_NFIC{dimer}:1.33697356397;MTF1:1.33214133625;ARID5B:1.28388502181;TBP:1.26659330975;HOXA9_MEIS1:1.2238205379;IKZF2:1.2172611897;MAZ:1.19891800149;MYBL2:1.13751752316;FOXN1:1.10703128457;TFAP2{A,C}:1.09941587526;MEF2{A,B,C,D}:1.09342807938;CEBPA,B_DDIT3:1.09255056922;PRRX1,2:1.0904745912;HLF:1.0875362069;FOXA2:1.08263269414;HMX1:1.07616488666;GZF1:1.05280145254;MAFB:1.05101990467;NR3C1:1.04409717102;SRF:1.03410665918;FOXP3:1.03076617222;TEAD1:0.999911559244;NFE2:0.997830267217;HIC1:0.977682191208;bHLH_family:0.964371086544;EBF1:0.865387501956;PAX6:0.860724019988;EGR1..3:0.843943586615;SPZ1:0.831646600337;MED-1{core}:0.824630161994;JUN:0.811668567836;TFAP2B:0.804804821717;NR1H4:0.796901828099;NFKB1_REL_RELA:0.729523789923;HSF1,2:0.717187242852;NKX3-2:0.71555108541;PATZ1:0.709598430345;ADNP_IRX_SIX_ZHX:0.704540060936;PAX5:0.679728047753;MYFfamily:0.669098481232;EN1,2:0.648033136807;ATF4:0.630334454954;HIF1A:0.621968389895;MTE{core}:0.61799916162;GTF2A1,2:0.613203525855;NHLH1,2:0.577422807623;NANOG:0.544914282317;IRF7:0.544605794307;RXR{A,B,G}:0.531134110591;RFX2..5_RFXANK_RFXAP:0.514589820706;GTF2I:0.496230980269;HOX{A5,B5}:0.495422694675;FOS_FOS{B,L1}_JUN{B,D}:0.490300934229;GFI1B:0.480314764987;SREBF1,2:0.443267139616;TLX2:0.381479373704;FOSL2:0.35728152607;CREB1:0.345675601333;ATF5_CREB3:0.321932309276;HOX{A4,D4}:0.293819701569;TFAP4:0.27856717959;NKX2-1,4:0.254215792993;DMAP1_NCOR{1,2}_SMARC:0.249719642479;BACH2:0.239699786965;FOXD3:0.2263222826;POU6F1:0.188821106369;CDC5L:0.177969623427;RBPJ:0.175620387812;HAND1,2:0.172103863581;MZF1:0.160948552475;BREu{core}:0.111634497715;NANOG{mouse}:0.110698968916;ZNF423:0.0999773304258;HNF1A:0.0821474457137;ZFP161:0.0813511446991;STAT5{A,B}:0.0645824971955;PAX2:0.0617508880757;PAX1,9:0.0231933020264;IRF1,2:0.0176146238061;FOX{F1,F2,J1}:0.00132016669149;ETS1,2:-0.00600957019373;LHX3,4:-0.00847419535164;ESR1:-0.048514275309;TBX4,5:-0.0540584288917;FOXP1:-0.0675079721375;SMAD1..7,9:-0.0830058353912;GATA4:-0.0858971309391;ZIC1..3:-0.0900343717821;SOX17:-0.101905650485;FOXQ1:-0.109265773408;NR6A1:-0.13274523916;PBX1:-0.142397330918;HMGA1,2:-0.163812275665;NFE2L2:-0.169381686621;NR5A1,2:-0.172099533266;TP53:-0.182758840976;GATA6:-0.190546223478;TEF:-0.20138785884;PAX8:-0.213754127823;FOX{I1,J2}:-0.226058061041;SPIB:-0.268957039268;NFY{A,B,C}:-0.284740997778;SPI1:-0.295124392524;ELF1,2,4:-0.317307419598;GLI1..3:-0.323234521776;NKX2-2,8:-0.329460744857;SOX2:-0.33195863964;ALX4:-0.351899039499;PRDM1:-0.382521813593;NKX2-3_NKX2-5:-0.387441149122;REST:-0.388411886914;RUNX1..3:-0.396696319948;ZNF148:-0.404809673941;ZNF143:-0.406417232698;ZNF384:-0.416291964692;RFX1:-0.416901613794;GFI1:-0.421118304436;BPTF:-0.433842391186;XCPE1{core}:-0.457426656001;KLF4:-0.528632211238;NKX6-1,2:-0.536407121454;NRF1:-0.56516797354;PAX3,7:-0.579922068034;ZBTB6:-0.61096486316;CUX2:-0.650284485583;RXRA_VDR{dimer}:-0.693618178084;PPARG:-0.694934436413;LEF1_TCF7_TCF7L1,2:-0.703752131237;OCT4_SOX2{dimer}:-0.728370853977;YY1:-0.751451236333;PAX4:-0.764075153343;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.765823067055;RREB1:-0.766318693374;AHR_ARNT_ARNT2:-0.784133085827;CRX:-0.792231730261;POU2F1..3:-0.859744669414;SOX{8,9,10}:-0.911400109704;PITX1..3:-0.917631894208;SNAI1..3:-0.920047156471;TAL1_TCF{3,4,12}:-0.921204387899;TFDP1:-0.937124685458;HOX{A6,A7,B6,B7}:-0.937283009387;UFEwm:-0.970006339302;ELK1,4_GABP{A,B1}:-0.986876962535;MYB:-1.00970162134;ZEB1:-1.0137128303;E2F1..5:-1.02268733736;LMO2:-1.04197530191;POU5F1:-1.08673520041;ALX1:-1.10148851789;CDX1,2,4:-1.11550665122;ONECUT1,2:-1.1708459876;HES1:-1.17349504452;T:-1.18420515806;POU3F1..4:-1.22070327946;AIRE:-1.26193200996;POU1F1:-1.31888341272;EVI1:-1.4304983882;VSX1,2:-1.59625487518;FOXM1:-1.74847189273;ZBTB16:-1.7838481828;MYOD1:-1.81235704396;TOPORS:-2.01483821396;NKX3-1:-2.2325325988 | |top_motifs=STAT2,4,6:3.2585286379;AR:2.88351654454;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.74350460994;ATF6:2.57311440402;ESRRA:2.44726669697;HBP1_HMGB_SSRP1_UBTF:2.40113841093;PDX1:2.26318420558;NFATC1..3:2.23665925019;RORA:2.23467480431;XBP1:2.20864274118;NFIL3:2.13094120909;STAT1,3:2.07639441405;FOXO1,3,4:1.88642901912;FOX{D1,D2}:1.8737798122;TFCP2:1.83956214024;ATF2:1.62037519435;NFE2L1:1.59708087817;TGIF1:1.58100939713;ZNF238:1.57302286227;GCM1,2:1.53821561658;IKZF1:1.48563195108;EP300:1.45102628016;DBP:1.43365743342;NFIX:1.42646837362;FOXL1:1.36047742776;SP1:1.35871330386;HNF4A_NR2F1,2:1.34887260461;SOX5:1.33788012605;TLX1..3_NFIC{dimer}:1.33697356397;MTF1:1.33214133625;ARID5B:1.28388502181;TBP:1.26659330975;HOXA9_MEIS1:1.2238205379;IKZF2:1.2172611897;MAZ:1.19891800149;MYBL2:1.13751752316;FOXN1:1.10703128457;TFAP2{A,C}:1.09941587526;MEF2{A,B,C,D}:1.09342807938;CEBPA,B_DDIT3:1.09255056922;PRRX1,2:1.0904745912;HLF:1.0875362069;FOXA2:1.08263269414;HMX1:1.07616488666;GZF1:1.05280145254;MAFB:1.05101990467;NR3C1:1.04409717102;SRF:1.03410665918;FOXP3:1.03076617222;TEAD1:0.999911559244;NFE2:0.997830267217;HIC1:0.977682191208;bHLH_family:0.964371086544;EBF1:0.865387501956;PAX6:0.860724019988;EGR1..3:0.843943586615;SPZ1:0.831646600337;MED-1{core}:0.824630161994;JUN:0.811668567836;TFAP2B:0.804804821717;NR1H4:0.796901828099;NFKB1_REL_RELA:0.729523789923;HSF1,2:0.717187242852;NKX3-2:0.71555108541;PATZ1:0.709598430345;ADNP_IRX_SIX_ZHX:0.704540060936;PAX5:0.679728047753;MYFfamily:0.669098481232;EN1,2:0.648033136807;ATF4:0.630334454954;HIF1A:0.621968389895;MTE{core}:0.61799916162;GTF2A1,2:0.613203525855;NHLH1,2:0.577422807623;NANOG:0.544914282317;IRF7:0.544605794307;RXR{A,B,G}:0.531134110591;RFX2..5_RFXANK_RFXAP:0.514589820706;GTF2I:0.496230980269;HOX{A5,B5}:0.495422694675;FOS_FOS{B,L1}_JUN{B,D}:0.490300934229;GFI1B:0.480314764987;SREBF1,2:0.443267139616;TLX2:0.381479373704;FOSL2:0.35728152607;CREB1:0.345675601333;ATF5_CREB3:0.321932309276;HOX{A4,D4}:0.293819701569;TFAP4:0.27856717959;NKX2-1,4:0.254215792993;DMAP1_NCOR{1,2}_SMARC:0.249719642479;BACH2:0.239699786965;FOXD3:0.2263222826;POU6F1:0.188821106369;CDC5L:0.177969623427;RBPJ:0.175620387812;HAND1,2:0.172103863581;MZF1:0.160948552475;BREu{core}:0.111634497715;NANOG{mouse}:0.110698968916;ZNF423:0.0999773304258;HNF1A:0.0821474457137;ZFP161:0.0813511446991;STAT5{A,B}:0.0645824971955;PAX2:0.0617508880757;PAX1,9:0.0231933020264;IRF1,2:0.0176146238061;FOX{F1,F2,J1}:0.00132016669149;ETS1,2:-0.00600957019373;LHX3,4:-0.00847419535164;ESR1:-0.048514275309;TBX4,5:-0.0540584288917;FOXP1:-0.0675079721375;SMAD1..7,9:-0.0830058353912;GATA4:-0.0858971309391;ZIC1..3:-0.0900343717821;SOX17:-0.101905650485;FOXQ1:-0.109265773408;NR6A1:-0.13274523916;PBX1:-0.142397330918;HMGA1,2:-0.163812275665;NFE2L2:-0.169381686621;NR5A1,2:-0.172099533266;TP53:-0.182758840976;GATA6:-0.190546223478;TEF:-0.20138785884;PAX8:-0.213754127823;FOX{I1,J2}:-0.226058061041;SPIB:-0.268957039268;NFY{A,B,C}:-0.284740997778;SPI1:-0.295124392524;ELF1,2,4:-0.317307419598;GLI1..3:-0.323234521776;NKX2-2,8:-0.329460744857;SOX2:-0.33195863964;ALX4:-0.351899039499;PRDM1:-0.382521813593;NKX2-3_NKX2-5:-0.387441149122;REST:-0.388411886914;RUNX1..3:-0.396696319948;ZNF148:-0.404809673941;ZNF143:-0.406417232698;ZNF384:-0.416291964692;RFX1:-0.416901613794;GFI1:-0.421118304436;BPTF:-0.433842391186;XCPE1{core}:-0.457426656001;KLF4:-0.528632211238;NKX6-1,2:-0.536407121454;NRF1:-0.56516797354;PAX3,7:-0.579922068034;ZBTB6:-0.61096486316;CUX2:-0.650284485583;RXRA_VDR{dimer}:-0.693618178084;PPARG:-0.694934436413;LEF1_TCF7_TCF7L1,2:-0.703752131237;OCT4_SOX2{dimer}:-0.728370853977;YY1:-0.751451236333;PAX4:-0.764075153343;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.765823067055;RREB1:-0.766318693374;AHR_ARNT_ARNT2:-0.784133085827;CRX:-0.792231730261;POU2F1..3:-0.859744669414;SOX{8,9,10}:-0.911400109704;PITX1..3:-0.917631894208;SNAI1..3:-0.920047156471;TAL1_TCF{3,4,12}:-0.921204387899;TFDP1:-0.937124685458;HOX{A6,A7,B6,B7}:-0.937283009387;UFEwm:-0.970006339302;ELK1,4_GABP{A,B1}:-0.986876962535;MYB:-1.00970162134;ZEB1:-1.0137128303;E2F1..5:-1.02268733736;LMO2:-1.04197530191;POU5F1:-1.08673520041;ALX1:-1.10148851789;CDX1,2,4:-1.11550665122;ONECUT1,2:-1.1708459876;HES1:-1.17349504452;T:-1.18420515806;POU3F1..4:-1.22070327946;AIRE:-1.26193200996;POU1F1:-1.31888341272;EVI1:-1.4304983882;VSX1,2:-1.59625487518;FOXM1:-1.74847189273;ZBTB16:-1.7838481828;MYOD1:-1.81235704396;TOPORS:-2.01483821396;NKX3-1:-2.2325325988 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12233-129G1;search_select_hide=table117:FF:12233-129G1 | |||
}} | }} |
Latest revision as of 18:35, 4 June 2020
Name: | mature adipocyte, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12560 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12560
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12560
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.117 |
10 | 10 | 0.212 |
100 | 100 | 0.748 |
101 | 101 | 0.574 |
102 | 102 | 0.16 |
103 | 103 | 0.769 |
104 | 104 | 0.987 |
105 | 105 | 0.907 |
106 | 106 | 0.595 |
107 | 107 | 0.709 |
108 | 108 | 0.428 |
109 | 109 | 0.136 |
11 | 11 | 0.106 |
110 | 110 | 0.0913 |
111 | 111 | 0.0591 |
112 | 112 | 0.461 |
113 | 113 | 0.7 |
114 | 114 | 0.0166 |
115 | 115 | 0.738 |
116 | 116 | 0.107 |
117 | 117 | 0.00339 |
118 | 118 | 0.26 |
119 | 119 | 0.744 |
12 | 12 | 0.194 |
120 | 120 | 0.14 |
121 | 121 | 0.944 |
122 | 122 | 0.363 |
123 | 123 | 0.0202 |
124 | 124 | 0.371 |
125 | 125 | 0.142 |
126 | 126 | 0.733 |
127 | 127 | 0.161 |
128 | 128 | 0.937 |
129 | 129 | 0.59 |
13 | 13 | 0.652 |
130 | 130 | 0.281 |
131 | 131 | 0.385 |
132 | 132 | 0.458 |
133 | 133 | 0.172 |
134 | 134 | 0.499 |
135 | 135 | 0.649 |
136 | 136 | 0.399 |
137 | 137 | 0.765 |
138 | 138 | 0.117 |
139 | 139 | 0.823 |
14 | 14 | 0.851 |
140 | 140 | 4.61278e-4 |
141 | 141 | 0.416 |
142 | 142 | 0.93 |
143 | 143 | 0.0707 |
144 | 144 | 0.546 |
145 | 145 | 0.21 |
146 | 146 | 0.326 |
147 | 147 | 0.507 |
148 | 148 | 0.421 |
149 | 149 | 0.727 |
15 | 15 | 0.371 |
150 | 150 | 0.65 |
151 | 151 | 0.41 |
152 | 152 | 0.474 |
153 | 153 | 0.0391 |
154 | 154 | 0.232 |
155 | 155 | 0.171 |
156 | 156 | 0.452 |
157 | 157 | 0.519 |
158 | 158 | 0.517 |
159 | 159 | 0.207 |
16 | 16 | 0.166 |
160 | 160 | 0.394 |
161 | 161 | 0.313 |
162 | 162 | 0.63 |
163 | 163 | 0.986 |
164 | 164 | 0.239 |
165 | 165 | 0.429 |
166 | 166 | 0.894 |
167 | 167 | 0.576 |
168 | 168 | 0.985 |
169 | 169 | 0.408 |
17 | 17 | 0.54 |
18 | 18 | 0.202 |
19 | 19 | 0.776 |
2 | 2 | 0.892 |
20 | 20 | 0.844 |
21 | 21 | 0.212 |
22 | 22 | 0.696 |
23 | 23 | 0.349 |
24 | 24 | 0.615 |
25 | 25 | 0.739 |
26 | 26 | 0.0836 |
27 | 27 | 0.338 |
28 | 28 | 0.774 |
29 | 29 | 0.0302 |
3 | 3 | 0.18 |
30 | 30 | 0.49 |
31 | 31 | 0.809 |
32 | 32 | 2.81139e-4 |
33 | 33 | 0.942 |
34 | 34 | 0.766 |
35 | 35 | 0.17 |
36 | 36 | 0.305 |
37 | 37 | 0.447 |
38 | 38 | 0.663 |
39 | 39 | 0.0427 |
4 | 4 | 0.124 |
40 | 40 | 0.291 |
41 | 41 | 0.988 |
42 | 42 | 0.477 |
43 | 43 | 0.594 |
44 | 44 | 0.014 |
45 | 45 | 0.374 |
46 | 46 | 0.0449 |
47 | 47 | 0.0621 |
48 | 48 | 0.0599 |
49 | 49 | 0.116 |
5 | 5 | 0.218 |
50 | 50 | 0.822 |
51 | 51 | 0.594 |
52 | 52 | 0.272 |
53 | 53 | 0.805 |
54 | 54 | 0.849 |
55 | 55 | 0.176 |
56 | 56 | 0.274 |
57 | 57 | 0.211 |
58 | 58 | 0.67 |
59 | 59 | 0.325 |
6 | 6 | 0.506 |
60 | 60 | 0.502 |
61 | 61 | 0.13 |
62 | 62 | 0.414 |
63 | 63 | 0.626 |
64 | 64 | 0.0975 |
65 | 65 | 0.872 |
66 | 66 | 0.424 |
67 | 67 | 0.48 |
68 | 68 | 0.932 |
69 | 69 | 0.0018 |
7 | 7 | 0.554 |
70 | 70 | 0.0135 |
71 | 71 | 0.0683 |
72 | 72 | 0.47 |
73 | 73 | 0.749 |
74 | 74 | 0.613 |
75 | 75 | 0.0661 |
76 | 76 | 0.436 |
77 | 77 | 0.715 |
78 | 78 | 0.68 |
79 | 79 | 0.116 |
8 | 8 | 0.231 |
80 | 80 | 0.16 |
81 | 81 | 0.474 |
82 | 82 | 0.584 |
83 | 83 | 0.0256 |
84 | 84 | 0.734 |
85 | 85 | 0.92 |
86 | 86 | 0.534 |
87 | 87 | 0.38 |
88 | 88 | 0.581 |
89 | 89 | 0.427 |
9 | 9 | 0.403 |
90 | 90 | 0.968 |
91 | 91 | 0.853 |
92 | 92 | 0.733 |
93 | 93 | 0.475 |
94 | 94 | 0.214 |
95 | 95 | 0.159 |
96 | 96 | 0.598 |
97 | 97 | 0.308 |
98 | 98 | 0.33 |
99 | 99 | 0.494 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12560
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000266 human mature adipocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000266 (human mature adipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)