FF:11349-117G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004888 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004888 | |||
|accession_numbers=CAGE;DRX008313;DRR009185;DRZ000610;DRZ001995;DRZ011960;DRZ013345 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037155;DRR041521;DRZ007163 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!293.37!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.09!136.01!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.96!89.92!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.81!62.94!CERS3;;chr1:6479968..6479986,-!p1@HES2!1.77!57.32!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.57!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.68!47.21!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.46!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.65!43.84!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.34!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.56!73.06!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.08!ZNF385A;;chr6:10415484..10415508,-!p3@TFAP2A!1.50!30.35!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.33!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.72!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!1.43!25.85!FOXA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.48!ZBED1;;chr17:80797886..80797906,-!p1@ZNF750!1.35!21.36!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!19.11!TFAP2A;;chr20:22564895..22564910,-!p1@FOXA2!1.30!19.11!FOXA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!146.12!PPP1R13L;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!28.10!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.96!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.22!15.74!GRHL3;;chr8:128748308..128748324,+!p2@MYC!1.19!396.78!MYC;;chr17:46132044..46132080,+!p4@NFE2L1!1.19!14.61!NFE2L1;;chr8:10588010..10588030,-!p1@SOX7!1.16!13.49!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.14!137.13!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.13!12.36!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.13!12.36!GRHL2;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.36!FOXA2;;chr4:57547454..57547469,-!p1@HOPX!1.13!12.36!HOPX;;chr17:41623692..41623715,-!p1@ETV4!1.10!49.46!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!1.09!11.24!FOXN3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.24!TFCP2L1;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.24!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr14:21566731..21566836,-!p1@ZNF219!1.06!112.40!ZNF219;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.49!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.12!OVOL1;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.12!ZBED2;;chr12:48298765..48298783,-!p2@VDR!1.02!20.23!VDR;;chr17:41623009..41623053,-!p4@ETV4!1.00!14.61!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.98!231.55!FOSL1;;chr8:128747757..128747800,+!p7@MYC!0.96!11.24!MYC;;chr15:101069102..101069112,-!p2@CERS3!0.95!7.87!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.95!7.87!SP6;;chr1:209979449..209979460,-!p3@IRF6!0.95!7.87!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.36!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.24!ZFP64;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.12!IRX3;;chr15:101069186..101069200,-!p4@CERS3!0.89!6.74!CERS3;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.74!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.87!GATA3;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr11:65667884..65667895,-!p2@FOSL1!0.83!23.60!FOSL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!432.75!TAX1BP3;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.19!DDB2;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.98!ZNF296;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.87!CENPT;;chr8:128747661..128747703,+!p6@MYC!0.82!7.87!MYC;;chr6:1312155..1312187,+!p2@FOXQ1!0.82!5.62!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!0.82!5.62!SPDEF;;chr1:209979375..209979386,-!p4@IRF6!0.82!5.62!IRF6;;chr1:2461692..2461710,-!p1@HES5!0.82!5.62!HES5;;chr11:129245526..129245553,+!p1@BARX2!0.82!5.62!BARX2;;chr18:3447536..3447542,+!p23@TGIF1!0.82!5.62!TGIF1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!654.18!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.80!397.90!ENO1;;chr16:2059754..2059777,-!p2@ZNF598!0.80!20.23!ZNF598;;chr17:38256799..38256815,-!p3@NR1D1!0.80!10.12!NR1D1;;chr7:148892653..148892729,+!p1@ZNF282!0.78!79.81!ZNF282;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.73!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.87!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.72!SNAI2;;chr2:46524878..46524891,+!p3@EPAS1!0.77!8.99!EPAS1;;chr17:41623075..41623101,-!p9@ETV4!0.76!5.62!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.60!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.36!DRAP1;;chr17:45928521..45928539,-!p1@SP6!0.74!4.50!SP6;;chr19:45908278..45908282,-!p5@PPP1R13L!0.74!4.50!PPP1R13L;;chr22:24093154..24093183,-!p2@ZNF70!0.74!4.50!ZNF70;;chr2:63277948..63277974,+!p1@OTX1!0.74!4.50!OTX1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.50!FOXL2;;chr5:1887070..1887114,-!p1@IRX4!0.74!4.50!IRX4;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.50!TFAP2A;;chr8:10588174..10588200,-!p3@SOX7!0.74!4.50!SOX7;;chr8:128748470..128748487,+!p1@MYC!0.73!539.53!MYC;;chr7:148892629..148892651,+!p2@ZNF282!0.73!29.22!ZNF282;;chr14:74353454..74353469,+!p4@ZNF410!0.73!8.99!ZNF410;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.74!ETV4;;chr1:893870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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!293.37!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.09!136.01!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.96!89.92!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.81!62.94!CERS3;;chr1:6479968..6479986,-!p1@HES2!1.77!57.32!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.57!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.68!47.21!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.46!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.65!43.84!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.34!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.56!73.06!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.08!ZNF385A;;chr6:10415484..10415508,-!p3@TFAP2A!1.50!30.35!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.33!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.72!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!1.43!25.85!FOXA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.48!ZBED1;;chr17:80797886..80797906,-!p1@ZNF750!1.35!21.36!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!19.11!TFAP2A;;chr20:22564895..22564910,-!p1@FOXA2!1.30!19.11!FOXA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!146.12!PPP1R13L;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!28.10!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.96!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.22!15.74!GRHL3;;chr8:128748308..128748324,+!p2@MYC!1.19!396.78!MYC;;chr17:46132044..46132080,+!p4@NFE2L1!1.19!14.61!NFE2L1;;chr8:10588010..10588030,-!p1@SOX7!1.16!13.49!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.14!137.13!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.13!12.36!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.13!12.36!GRHL2;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.36!FOXA2;;chr4:57547454..57547469,-!p1@HOPX!1.13!12.36!HOPX;;chr17:41623692..41623715,-!p1@ETV4!1.10!49.46!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!1.09!11.24!FOXN3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.24!TFCP2L1;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.24!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr14:21566731..21566836,-!p1@ZNF219!1.06!112.40!ZNF219;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.49!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.12!OVOL1;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.12!ZBED2;;chr12:48298765..48298783,-!p2@VDR!1.02!20.23!VDR;;chr17:41623009..41623053,-!p4@ETV4!1.00!14.61!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.98!231.55!FOSL1;;chr8:128747757..128747800,+!p7@MYC!0.96!11.24!MYC;;chr15:101069102..101069112,-!p2@CERS3!0.95!7.87!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.95!7.87!SP6;;chr1:209979449..209979460,-!p3@IRF6!0.95!7.87!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.36!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.24!ZFP64;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.12!IRX3;;chr15:101069186..101069200,-!p4@CERS3!0.89!6.74!CERS3;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.74!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.87!GATA3;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr11:65667884..65667895,-!p2@FOSL1!0.83!23.60!FOSL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!432.75!TAX1BP3;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.19!DDB2;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.98!ZNF296;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.87!CENPT;;chr8:128747661..128747703,+!p6@MYC!0.82!7.87!MYC;;chr6:1312155..1312187,+!p2@FOXQ1!0.82!5.62!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!0.82!5.62!SPDEF;;chr1:209979375..209979386,-!p4@IRF6!0.82!5.62!IRF6;;chr1:2461692..2461710,-!p1@HES5!0.82!5.62!HES5;;chr11:129245526..129245553,+!p1@BARX2!0.82!5.62!BARX2;;chr18:3447536..3447542,+!p23@TGIF1!0.82!5.62!TGIF1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!654.18!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.80!397.90!ENO1;;chr16:2059754..2059777,-!p2@ZNF598!0.80!20.23!ZNF598;;chr17:38256799..38256815,-!p3@NR1D1!0.80!10.12!NR1D1;;chr7:148892653..148892729,+!p1@ZNF282!0.78!79.81!ZNF282;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.73!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.87!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.72!SNAI2;;chr2:46524878..46524891,+!p3@EPAS1!0.77!8.99!EPAS1;;chr17:41623075..41623101,-!p9@ETV4!0.76!5.62!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.60!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.36!DRAP1;;chr17:45928521..45928539,-!p1@SP6!0.74!4.50!SP6;;chr19:45908278..45908282,-!p5@PPP1R13L!0.74!4.50!PPP1R13L;;chr22:24093154..24093183,-!p2@ZNF70!0.74!4.50!ZNF70;;chr2:63277948..63277974,+!p1@OTX1!0.74!4.50!OTX1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.50!FOXL2;;chr5:1887070..1887114,-!p1@IRX4!0.74!4.50!IRX4;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.50!TFAP2A;;chr8:10588174..10588200,-!p3@SOX7!0.74!4.50!SOX7;;chr8:128748470..128748487,+!p1@MYC!0.73!539.53!MYC;;chr7:148892629..148892651,+!p2@ZNF282!0.73!29.22!ZNF282;;chr14:74353454..74353469,+!p4@ZNF410!0.73!8.99!ZNF410;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.74!ETV4;;chr1:8938709..8938720,-!p3@ENO1!0.71!227.05!ENO1;;chr12:48298785..48298828,-!p1@VDR!0.71!24.73!VDR;;chr11:62369229..62369289,-!p2@MTA2!0.70!67.44!MTA2;;chr17:38256822..38256851,-!p1@NR1D1!0.70!35.97!NR1D1;;chr8:145159324..145159333,+!p5@MAF1!0.70!8.99!MAF1;;chr6:34204642..34204664,+!p2@HMGA1!0.69!600.23!HMGA1;;chr12:57914286..57914304,-!p1@DDIT3!0.69!161.86!DDIT3;;chr1:8938736..8938756,-!p1@ENO1!0.68!4805.17!ENO1;;chr2:239756671..239756732,+!p1@TWIST2!0.68!13.49!TWIST2;;chr7:27135591..27135658,-!p1@HOXA1!0.68!7.87!HOXA1;;chr17:41623259..41623278,-!p7@ETV4!0.68!4.50!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.67!22.48!RARG;;chr2:239756739..239756755,+!p2@TWIST2!0.67!6.74!TWIST2;;chr9:110252035..110252057,-!p1@KLF4!0.66!66.32!KLF4;;chr17:41622834..41622883,-!p6@ETV4!0.66!4.50!ETV4;;chr10:8096631..8096660,+!p1@GATA3!0.66!4.50!GATA3;;chr12:66218003..66218018,+!p9@HMGA2!0.66!4.50!HMGA2;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.35!TFAP4;;chr10:104155480..104155534,+!p2@NFKB2!0.65!25.85!NFKB2;;chr2:70314240..70314256,+!p4@PCBP1!0.65!7.87!PCBP1;;chr20:48807548..48807572,+!p14@CEBPB!0.65!4.50!CEBPB;;chr17:3571887..3571918,-!p2@TAX1BP3!0.64!43.84!TAX1BP3;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.46!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.64!10.12!RARG;;chr11:47270436..47270464,+!p2@NR1H3!0.64!7.87!NR1H3;;chr18:3449720..3449749,+!p2@TGIF1!0.64!7.87!TGIF1;;chr17:47492203..47492214,-!p3@PHB!0.64!5.62!PHB;;chr17:46131916..46131952,+!p7@NFE2L1!0.64!3.37!NFE2L1;;chr5:1887052..1887065,-!p2@IRX4!0.64!3.37!IRX4;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.37!TFAP2A;;chr6:106546786..106546802,+!p6@PRDM1!0.64!3.37!PRDM1;;chr6:34524025..34524045,-!p3@SPDEF!0.64!3.37!SPDEF;;chr9:100615499..100615519,+!p1@FOXE1!0.64!3.37!FOXE1;;chr1:24646263..24646277,+!p4@GRHL3!0.64!3.37!GRHL3;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.37!OVOL2;;chr20:18038521..18038571,-!p1@OVOL2!0.64!3.37!OVOL2;;chr2:63277978..63277995,+!p2@OTX1!0.64!3.37!OTX1;;chr4:299227..299272,-!p1@ZNF732!0.64!3.37!ZNF732;;chr8:48650715..48650735,-!p1@CEBPD!0.63!492.32!CEBPD;;chr11:62369291..62369351,-!p1@MTA2!0.63!71.94!MTA2;;chr18:47807845..47807918,-!p1@MBD1!0.63!68.57!MBD1;;chr11:62369204..62369217,-!p7@MTA2!0.63!7.87!MTA2;;chr5:72744594..72744609,-!p1@FOXD1!0.62!16.86!FOXD1;;chr7:148892581..148892604,+!p3@ZNF282!0.62!11.24!ZNF282;;chr17:61920116..61920131,-!p5@SMARCD2!0.62!6.74!SMARCD2;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.23!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.61!7.87!CARHSP1;;chr1:10754477..10754517,-!p1@CASZ1!0.61!5.62!CASZ1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.60!44.96!ZC3H12A;;chr19:57946684..57946723,+!p1@ZNF749!0.60!39.34!ZNF749;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.36!CREB5;;chr22:29196547..29196563,-!p2@XBP1!0.59!129.26!XBP1;;chr20:48807875..48807982,+!p2@CEBPB!0.59!77.56!CEBPB;;chr12:124827609..124827643,-!p9@NCOR2!0.59!4.50!NCOR2;;chr16:54964740..54964789,+!p1@IRX5!0.59!4.50!IRX5;;chr1:158979792..158979814,+!p2@IFI16!0.58!32.60!IFI16;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.36!PAWR;;chr19:56652621..56652641,+!p2@ZNF444!0.58!6.74!ZNF444;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.37!BCL11A;;chr20:48807351..48807384,+!p1@CEBPB!0.56!338.33!CEBPB;;chr2:70142232..70142251,+!p1@MXD1!0.56!17.98!MXD1;;chr2:242576641..242576731,-!p2@THAP4!0.56!12.36!THAP4;;chrX:48900782..48900793,-!p3@TFE3!0.56!5.62!TFE3;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.37!ZNF587;;chr18:3450161..3450183,+!p1@TGIF1!0.55!111.28!TGIF1;;chr6:34204921..34204939,+!p3@HMGA1!0.55!96.67!HMGA1;;chr19:19303731..19303783,+!p1@RFXANK!0.55!76.43!RFXANK;;chr11:62369383..62369399,-!p6@MTA2!0.55!6.74!MTA2;;chr10:104155659..104155676,+!p4@NFKB2!0.55!3.37!NFKB2;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.37!FOXD1;;chr1:149858461..149858479,+!p1@BOLA1!0.54!1248.78!BOLA1;;chr8:49833978..49833996,-!p1@SNAI2!0.54!65.19!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.54!29.22!HMGA2;;chr16:2059797..2059837,-!p1@ZNF598!0.54!12.36!ZNF598;;chr1:154975258..154975330,+!p1@ZBTB7B!0.54!11.24!ZBTB7B;;chr14:74353576..74353589,+!p3@ZNF410!0.54!10.12!ZNF410;;chr11:65687222..65687240,+!p7@DRAP1!0.54!3.37!DRAP1;;chr8:145515263..145515299,+!p1@HSF1!0.53!222.56!HSF1;;chr12:132628963..132629027,+!p1@NOC4L!0.53!44.96!NOC4L;;chr12:3068544..3068597,+!p1@TEAD4!0.53!17.98!TEAD4;;chr11:46722560..46722595,+!p1@ZNF408!0.53!15.74!ZNF408;;chr12:7079780..7079791,-!p2@PHB2!0.53!15.74!PHB2;;chr11:62369108..62369183,-!p3@MTA2!0.52!38.22!MTA2;;chr2:28618532..28618610,+!p4@FOSL2!0.52!4.50!FOSL2;;chr14:21566540..21566580,-!p2@ZNF219!0.52!3.37!ZNF219;;chrX:129402754..129402766,-!p3@ZNF280C!0.52!3.37!ZNF280C;;chr19:33865009..33865090,+!p3@CEBPG!0.52!3.37!CEBPG;;chrX:48900871..48900890,-!p1@TFE3!0.51!151.74!TFE3;;chr2:27357479..27357524,-!p1@PREB!0.51!84.30!PREB;;chr11:64073022..64073056,+!p1@ESRRA!0.51!34.84!ESRRA;;chr16:88519669..88519726,+!p1@ZFPM1!0.51!25.85!ZFPM1;;chr4:4291837..4291859,-!p2@LYAR!0.51!8.99!LYAR;;chr1:154975110..154975149,+!p2@ZBTB7B!0.51!5.62!ZBTB7B;;chr19:45908286..45908291,-!p3@PPP1R13L!0.51!2.25!PPP1R13L;;c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1.12!NFE2L2;;chr3:178789993..178790049,-!p5@ZMAT3!0.17!1.12!ZMAT3;;chr14:21566882..21566898,-!p3@ZNF219!0.17!1.12!ZNF219;;chr6:91006575..91006602,-!p2@BACH2!0.17!1.12!BACH2;;chr19:58666399..58666438,-!p3@ZNF329!0.17!1.12!ZNF329;;chr15:57210795..57210809,+!p8@TCF12!0.17!1.12!TCF12;;chr18:74207186..74207204,-!p3@ZNF516!0.17!1.12!ZNF516;;chr19:3366625..3366629,+!p4@NFIC!0.17!1.12!NFIC;;chr2:178129414..178129517,-!p1@NFE2L2!0.16!51.70!NFE2L2;;chr19:7580944..7581031,+!p1@ZNF358!0.16!39.34!ZNF358;;chr18:47814032..47814079,-!p1@CXXC1!0.16!23.60!CXXC1;;chr16:30798492..30798535,-!p1@ZNF629!0.16!20.23!ZNF629;;chr20:306489..306564,+!p1@SOX12!0.16!13.49!SOX12;;chr19:42724436..42724507,+!p1@ZNF526!0.16!10.12!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.16!8.99!ZNF542;;chr6:35227480..35227546,+!p1@ZNF76!0.16!7.87!ZNF76;;chr19:58514129..58514205,-!p1@ZNF606!0.16!6.74!ZNF606;;chr16:30621663..30621718,-!p1@ZNF689!0.16!5.62!ZNF689;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.16!4.50!ZNF747;;chr8:128750654..128750793,+!p3@MYC!0.16!4.50!MYC;;chr2:178129358..178129403,-!p5@NFE2L2!0.16!4.50!NFE2L2;;chr19:58220517..58220583,-!p1@ZNF154!0.16!3.37!ZNF154;;chr17:38256877..38256900,-!p2@NR1D1!0.16!3.37!NR1D1;;chr15:64752804..64752842,+!p2@ZNF609!0.16!2.25!ZNF609;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.16!2.25!ZNF700;;chr22:38598057..38598071,+!p3@MAFF!0.16!2.25!MAFF;;chr12:80084167..80084197,-!p5@PAWR!0.16!2.25!PAWR;;chr1:249153232..249153251,-!p2@ZNF692!0.16!2.25!ZNF692;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.16!2.25!ZKSCAN5;;chr6:45390442..45390479,+!p8@RUNX2!0.16!1.12!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!0.16!1.12!MYBL1;;chr22:42269885..42269899,+!p4@SREBF2!0.16!1.12!SREBF2;;chr4:81104895..81104920,+!p2@PRDM8!0.16!1.12!PRDM8;;chr19:44037334..44037365,+!p2@ZNF575!0.16!1.12!ZNF575;;chr19:57019215..57019250,+!p1@ZNF471!0.16!1.12!ZNF471;;chr1:247171316..247171336,-!p3@ZNF695!0.16!1.12!ZNF695;;chr20:48807430..48807439,+!p8@CEBPB!0.16!1.12!CEBPB;;chr12:51566592..51566617,-!p3@TFCP2!0.16!1.12!TFCP2;;chr10:3827389..3827408,-!p1@KLF6!0.15!98.91!KLF6;;chr7:139762641..139762768,-!p1@PARP12!0.15!16.86!PARP12;;chr12:8185288..8185339,+!p1@FOXJ2!0.15!12.36!FOXJ2;;chr1:151254738..151254787,+!p1@ZNF687!0.15!11.24!ZNF687;;chr19:44952635..44952668,-!p1@ZNF229!0.15!5.62!ZNF229;;chr14:74226783..74226819,-!p4@C14orf43!0.15!5.62!C14orf43;;chr19:19516543..19516559,+!p6@GATAD2A!0.15!3.37!GATAD2A;;chr19:45252008..45252024,+!p2@BCL3!0.15!3.37!BCL3;;chr4:10458982..10459007,-!p2@ZNF518B!0.15!3.37!ZNF518B;;chr11:128392309..128392350,-!p3@ETS1!0.15!2.25!ETS1;;chr17:35767301..35767344,+!p2@TADA2A!0.15!2.25!TADA2A;;chr16:30569604..30569629,-!p3@ZNF764!0.15!1.12!ZNF764;;chr18:3449695..3449712,+!p9@TGIF1!0.15!1.12!TGIF1;;chr19:35455160..35455197,-!p2@ZNF792!0.15!1.12!ZNF792;;chr3:141121847..141121868,+!p5@ZBTB38!0.15!1.12!ZBTB38;;chr5:134369905..134369972,-!p1@PITX1!0.15!1.12!PITX1;;chr8:145159277..145159282,+!p7@MAF1!0.15!1.12!MAF1;;chr8:99956662..99956684,+!p1@OSR2!0.15!1.12!OSR2;;chr19:56111614..56111634,+!p3@ZNF524!0.15!1.12!ZNF524;;chr19:56879534..56879615,+!p3@ZNF542!0.15!1.12!ZNF542;;chr1:247095162..247095173,-!p3@AHCTF1!0.15!1.12!AHCTF1;;chr1:8483723..8483752,-!p12@RERE!0.15!1.12!RERE;;chr16:89940012..89940059,+!p1@TCF25!0.14!106.78!TCF25;;chr16:31128978..31129002,+!p1@KAT8!0.14!59.57!KAT8;;chr14:75894714..75894733,+!p1@JDP2!0.14!34.84!JDP2;;chr7:4815238..4815327,+!p1@KIAA0415!0.14!26.98!AP5Z1;;chr20:62258402..62258464,-!p1@GMEB2!0.14!13.49!GMEB2;;chr19:1863591..1863611,-!p2@KLF16!0.14!11.24!KLF16;;chr19:47617013..47617069,-!p2@ZC3H4!0.14!6.74!ZC3H4;;chr19:56152437..56152467,+!p3@ZNF580!0.14!5.62!ZNF580;;chr6:41703296..41703367,-!p1@TFEB!0.14!5.62!TFEB;;chr7:149194843..149194922,-!p2@ZNF746!0.14!5.62!ZNF746;;chr3:37217736..37217753,-!p2@LRRFIP2!0.14!4.50!LRRFIP2;;chr7:17338324..17338341,+!p3@AHR!0.14!3.37!AHR;;chr17:38498594..38498661,+!p2@RARA!0.14!3.37!RARA;;chr16:67596384..67596411,+!p3@CTCF!0.14!2.25!CTCF;;chr17:61919985..61920012,-!p3@SMARCD2!0.14!2.25!SMARCD2;;chr18:3450293..3450304,+!p4@TGIF1!0.14!2.25!TGIF1;;chr19:33864571..33864596,+!p2@CEBPG!0.14!2.25!CEBPG;;chr1:226595726..226595737,-!p2@PARP1!0.14!2.25!PARP1;;chr11:12696002..12696022,+!p2@TEAD1!0.14!2.25!TEAD1;;chr14:74253834..74253862,-!p5@C14orf43!0.14!2.25!C14orf43;;chr12:6798107..6798140,-!p7@ZNF384!0.14!1.12!ZNF384;;chr14:24584138..24584192,-!p2@NRL!0.14!1.12!NRL;;chr15:77713299..77713316,+!p3@HMG20A!0.14!1.12!HMG20A;;chr16:30569652..30569668,-!p2@ZNF764!0.14!1.12!ZNF764;;chr16:67596336..67596353,+!p4@CTCF!0.14!1.12!CTCF;;chr19:11071630..11071644,+!p4@SMARCA4!0.14!1.12!SMARCA4;;chr22:38598042..38598052,+!p4@MAFF!0.14!1.12!MAFF;;chr19:49140572..49140594,-!p2@DBP!0.14!1.12!DBP;;chr19:56152471..56152482,+!p6@ZNF580!0.14!1.12!ZNF580;;chr19:56671612..56671626,+!p4@ZNF444!0.14!1.12!ZNF444;;chr1:247242107..247242120,-!p2@ZNF670!0.14!1.12!ZNF670;;chr1:27022092..27022108,+!p6@ARID1A!0.14!1.12!ARID1A;;chr1:43148855..43148908,+!p4@YBX1!0.14!1.12!YBX1;;chr1:8484294..8484307,-!p16@RERE!0.14!1.12!RERE;;chr20:49547554..49547563,-!p6@ADNP!0.14!1.12!ADNP;;chr7:128577972..128578047,+!p1@IRF5!0.14!1.12!IRF5;;chr7:148823485..148823510,+!p4@ZNF398!0.14!1.12!ZNF398;;chr17:17740287..17740307,-!p1@SREBF1!0.13!31.47!SREBF1;;chr16:31085714..31085783,+!p1@ZNF646!0.13!19.11!ZNF646;;chr6:35464817..35464894,-!p1@TEAD3!0.13!17.98!TEAD3;;chr22:41601296..41601355,+!p1@L3MBTL2!0.13!13.49!L3MBTL2;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.13!11.24!ZNF576;;chr15:85291544..85291598,+!p2@ZNF592!0.13!6.74!ZNF592;;chr16:3450963..3451019,-!p1@ZNF434!0.13!6.74!ZNF434;;chr10:104154246..104154347,+!p3@NFKB2!0.13!6.74!NFKB2;;chr19:58400372..58400411,-!p1@ZNF814!0.13!5.62!ZNF814;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.62!FOSL2;;chr19:19496577..19496619,+!p5@GATAD2A!0.13!3.37!GATAD2A;;chr19:6110555..6110617,-!p2@RFX2!0.13!3.37!RFX2;;chr1:23694794..23694863,-!p1@ZNF436!0.13!3.37!ZNF436;;chr14:35872962..35873025,-!p3@NFKBIA!0.13!2.25!NFKBIA;;chr11:130184644..130184662,-!p5@ZBTB44!0.13!1.12!ZBTB44;;chr12:50479101..50479108,+!p3@SMARCD1!0.13!1.12!SMARCD1;;chr12:6798692..6798723,-!p5@ZNF384!0.13!1.12!ZNF384;;chr1:27022578..27022589,+!p5@ARID1A!0.13!1.12!ARID1A;;chr1:8763510..8763538,-!p15@RERE!0.13!1.12!RERE;;chr21:36260343..36260402,-!p6@RUNX1!0.13!1.12!RUNX1;;chr2:217277271..217277290,+!p3@SMARCAL1!0.13!1.12!SMARCAL1;;chr3:150126101..150126118,+!p6@TSC22D2!0.13!1.12!TSC22D2;;chr3:71114279..71114308,-!p13@FOXP1!0.13!1.12!FOXP1;;chr4:103422457..103422469,+!p3@NFKB1!0.13!1.12!NFKB1;;chr16:3185051..3185068,+!p3@ZNF213!0.13!1.12!ZNF213;;chr19:12551785..12551823,-!p1@ZNF443!0.13!1.12!ZNF443;;chr6:27356745..27356777,+!p1@ZNF391!0.13!1.12!ZNF391;;chr6:28303901..28303944,-!p2@ZNF323!0.13!1.12!ZNF323;;chr12:53845879..53845894,+!p1@PCBP2!0.12!834.02!PCBP2;;chr19:1652575..1652621,-!p1@TCF3!0.12!44.96!TCF3;;chr19:3572925..3573014,+!p1@HMG20B!0.12!34.84!HMG20B;;chr19:56152361..56152434,+!p1@ZNF580!0.12!31.47!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.12!20.23!ZBTB17;;chr6:155635583..155635644,-!p1@TFB1M!0.12!14.61!TFB1M;;chr1:151319710..151319774,-!p1@RFX5!0.12!11.24!RFX5;;chr19:9546177..9546224,-!p1@ZNF266!0.12!7.87!ZNF266;;chr8:144329092..144329140,+!p1@ZFP41!0.12!7.87!ZFP41;;chrX:129244454..129244488,-!p1@ELF4!0.12!7.87!ELF4;;chr12:96588219..96588263,+!p2@ELK3!0.12!7.87!ELK3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.12!6.74!SNAPC4;;chr1:935467..935484,-!p1@HES4!0.12!4.50!HES4;;chr16:30569678..30569720,-!p1@ZNF764!0.12!3.37!ZNF764;;chr17:46125685..46125699,+!p3@NFE2L1!0.12!3.37!NFE2L1;;chr16:89787937..89787971,+!p1@ZNF276!0.12!2.25!ZNF276;;chr19:20150301..20150321,-!p1@ZNF682!0.12!2.25!ZNF682;;chr19:31840313..31840380,-!p1@TSHZ3!0.12!2.25!TSHZ3;;chr19:46271505..46271575,-!p2@SIX5!0.12!2.25!SIX5;;chr1:33938236..33938267,+!p1@ZSCAN20!0.12!2.25!ZSCAN20;;chr6:126240380..126240430,+!p2@NCOA7!0.12!2.25!NCOA7;;chr1:151431811..151431832,-!p3@POGZ!0.12!1.12!POGZ;;chr1:204042723..204042784,+!p3@SOX13!0.12!1.12!SOX13;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.12!1.12!ELK4;;chr20:48807615..48807644,+!p6@CEBPB!0.12!1.12!CEBPB;;chr15:96875657..96875760,+!p14@NR2F2!0.12!1.12!NR2F2;;chr19:11877805..11877832,+!p2@ZNF441!0.12!1.12!ZNF441;;chr9:94186085..94186096,-!p3@NFIL3!0.12!1.12!NFIL3;;chr9:137218262..137218273,+!p5@RXRA!0.12!1.12!RXRA;;chr14:64970401..64970423,-!p7@ZBTB25!0.12!1.12!ZBTB25;;chr8:102217817..102217936,-!p1@ZNF706!0.11!53.95!ZNF706;;chr2:74374995..74375055,-!p1@BOLA3!0.11!51.70!BOLA3;;chr2:220094514..220094599,+!p1@ANKZF1!0.11!33.72!ANKZF1;;chr3:179040767..179040866,+!p1@ZNF639!0.11!11.24!ZNF639;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221 | |ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11349-117G8 | |id=FF:11349-117G8 | ||
|is_a=EFO:0002091;;FF:0000082 | |is_a=EFO:0002091;;FF:0000082 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11381 | |||
|library_id_phase_based=2:CNhs11381 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11349 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.AGTTCC.11349 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11349 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.AGTTCC.11349 | |||
|name=Keratinocyte - epidermal, donor2 | |name=Keratinocyte - epidermal, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11381,LSID771,release012,COMPLETED | |profile_hcage=CNhs11381,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA102-R10a | |rna_catalog_number=CA102-R10a | ||
Line 60: | Line 82: | ||
|rna_tube_id=117G8 | |rna_tube_id=117G8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.AGTTCC | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 106: | ||
|top_motifs=TP53:2.51545230319;PPARG:2.27346256217;ZEB1:2.15301975065;TBX4,5:2.00750189564;ZNF148:1.7945290705;SNAI1..3:1.57509366516;TBP:1.5620903366;GLI1..3:1.5449305188;NANOG:1.53961847775;bHLH_family:1.52887580228;MYOD1:1.33645147312;NR5A1,2:1.30205302014;CRX:1.15205933149;POU2F1..3:1.14513806639;STAT5{A,B}:1.077727078;LMO2:1.06447874245;ONECUT1,2:0.958232374261;HOX{A5,B5}:0.951645392073;PAX1,9:0.937955221839;HLF:0.926053064931;CEBPA,B_DDIT3:0.924249401036;ZNF423:0.842161084257;PDX1:0.834890089932;FOS_FOS{B,L1}_JUN{B,D}:0.794123755801;HAND1,2:0.758555544893;TEAD1:0.739087405416;HES1:0.718206822044;GFI1B:0.701601078284;VSX1,2:0.687816522722;POU1F1:0.656128000638;BACH2:0.621460549588;GTF2A1,2:0.613904233589;NKX3-2:0.606672582679;TFCP2:0.591715848624;ADNP_IRX_SIX_ZHX:0.574961122588;EP300:0.565133503746;NKX2-3_NKX2-5:0.529181141691;LHX3,4:0.490667573444;PAX8:0.459198780145;IKZF1:0.452559440283;LEF1_TCF7_TCF7L1,2:0.4278869969;TFAP2{A,C}:0.40544435717;FOSL2:0.405061351356;ARID5B:0.387999162922;ZNF238:0.329542828449;TLX1..3_NFIC{dimer}:0.321893823587;NFIL3:0.318572930838;NFE2:0.281116110205;XCPE1{core}:0.261751304586;REST:0.246017138936;FOXM1:0.244815682714;PBX1:0.220962174928;MTF1:0.213529143545;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.184861263477;EBF1:0.182195132888;SOX17:0.1814695807;T:0.157535030232;GZF1:0.152651262395;NFE2L1:0.130025398645;PAX4:0.127540808171;NR1H4:0.123709389942;SP1:0.123177783758;AR:0.120261175931;GATA6:0.0392340804147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0358177542844;NFKB1_REL_RELA:0.0328369192321;POU5F1:0.0287891662689;NFIX:0.0257744271979;CDC5L:-0.00240587971539;RORA:-0.00558321020303;PITX1..3:-0.00870623031909;SMAD1..7,9:-0.0114021580676;POU3F1..4:-0.0130285720308;GCM1,2:-0.0350538186701;HMX1:-0.0401833774082;FOX{I1,J2}:-0.040634525011;ESRRA:-0.0593372779443;PAX2:-0.0646641670438;ELK1,4_GABP{A,B1}:-0.0703735819902;HNF1A:-0.0705310210362;RXRA_VDR{dimer}:-0.085264186526;POU6F1:-0.0891865722328;TFAP4:-0.0910365351378;HIF1A:-0.0927786120031;FOX{F1,F2,J1}:-0.105935074318;ZIC1..3:-0.109095704921;YY1:-0.126174149158;HNF4A_NR2F1,2:-0.142707899466;FOXQ1:-0.14379838093;HOX{A4,D4}:-0.154748148848;OCT4_SOX2{dimer}:-0.157371756862;JUN:-0.15952822649;ETS1,2:-0.189238549701;ATF2:-0.191697345139;FOXA2:-0.211140595665;SPZ1:-0.214588068742;ESR1:-0.2667485604;GFI1:-0.266817012983;NR3C1:-0.300621471384;RREB1:-0.322621707925;NFE2L2:-0.333836892551;ZBTB6:-0.343494038732;NKX2-1,4:-0.351717313347;SOX{8,9,10}:-0.353080258311;MYB:-0.35735425593;SPIB:-0.36148665715;HOX{A6,A7,B6,B7}:-0.373473762277;FOXL1:-0.402388382111;ATF5_CREB3:-0.417993057224;RFX1:-0.420102485636;RUNX1..3:-0.427111108884;STAT2,4,6:-0.436669822119;SOX2:-0.44914495627;NKX2-2,8:-0.462166147275;UFEwm:-0.472458561898;IRF7:-0.487644051735;TAL1_TCF{3,4,12}:-0.503003457269;MEF2{A,B,C,D}:-0.505099009004;ELF1,2,4:-0.5182708449;CREB1:-0.530601710128;KLF4:-0.532795862175;SPI1:-0.537112791418;HIC1:-0.552926040695;GTF2I:-0.566526222002;CUX2:-0.577621280672;TEF:-0.582499328766;MAFB:-0.584125299332;PRRX1,2:-0.584611625038;SRF:-0.598140425607;MAZ:-0.598156397382;ZNF143:-0.602861824104;ATF4:-0.632777465341;PAX6:-0.634012109212;HOXA9_MEIS1:-0.64744966239;NR6A1:-0.648555681204;NFY{A,B,C}:-0.661046242953;SOX5:-0.674548016252;EN1,2:-0.687620773949;TFAP2B:-0.693403188191;TLX2:-0.699653620366;ALX4:-0.702320008717;E2F1..5:-0.709292639925;MYFfamily:-0.720125678341;RFX2..5_RFXANK_RFXAP:-0.753910196365;NHLH1,2:-0.771796149883;MED-1{core}:-0.774801556888;TFDP1:-0.833654634964;XBP1:-0.847938166393;NFATC1..3:-0.85475849286;AHR_ARNT_ARNT2:-0.858855310608;RXR{A,B,G}:-0.910152868235;FOX{D1,D2}:-0.914925749413;RBPJ:-0.92926143841;FOXP3:-0.935134698407;DBP:-0.974390970833;ZNF384:-0.991882483708;TOPORS:-1.00105765833;NRF1:-1.01068596919;AIRE:-1.03009233398;MYBL2:-1.03196879405;TGIF1:-1.09116329454;PAX5:-1.09122426457;EGR1..3:-1.1188096884;MTE{core}:-1.12278400691;ATF6:-1.12537021971;EVI1:-1.13391596374;ZFP161:-1.16572052359;ALX1:-1.20175936104;PRDM1:-1.20919349199;ZBTB16:-1.22428305271;FOXN1:-1.23856772235;GATA4:-1.25176021173;HSF1,2:-1.26207511226;NANOG{mouse}:-1.32167654529;IRF1,2:-1.36608058307;CDX1,2,4:-1.36998885784;MZF1:-1.39927336514;PATZ1:-1.40796767205;BREu{core}:-1.43105137943;SREBF1,2:-1.52308317794;NKX6-1,2:-1.60204276116;FOXO1,3,4:-1.60666976731;HMGA1,2:-1.61438080543;STAT1,3:-1.62193571527;FOXP1:-1.63390786529;DMAP1_NCOR{1,2}_SMARC:-1.64240707619;BPTF:-1.65026279534;NKX3-1:-1.67138756753;PAX3,7:-1.71347822164;HBP1_HMGB_SSRP1_UBTF:-2.07136949864;FOXD3:-2.44737900181;IKZF2:-2.64194737002 | |top_motifs=TP53:2.51545230319;PPARG:2.27346256217;ZEB1:2.15301975065;TBX4,5:2.00750189564;ZNF148:1.7945290705;SNAI1..3:1.57509366516;TBP:1.5620903366;GLI1..3:1.5449305188;NANOG:1.53961847775;bHLH_family:1.52887580228;MYOD1:1.33645147312;NR5A1,2:1.30205302014;CRX:1.15205933149;POU2F1..3:1.14513806639;STAT5{A,B}:1.077727078;LMO2:1.06447874245;ONECUT1,2:0.958232374261;HOX{A5,B5}:0.951645392073;PAX1,9:0.937955221839;HLF:0.926053064931;CEBPA,B_DDIT3:0.924249401036;ZNF423:0.842161084257;PDX1:0.834890089932;FOS_FOS{B,L1}_JUN{B,D}:0.794123755801;HAND1,2:0.758555544893;TEAD1:0.739087405416;HES1:0.718206822044;GFI1B:0.701601078284;VSX1,2:0.687816522722;POU1F1:0.656128000638;BACH2:0.621460549588;GTF2A1,2:0.613904233589;NKX3-2:0.606672582679;TFCP2:0.591715848624;ADNP_IRX_SIX_ZHX:0.574961122588;EP300:0.565133503746;NKX2-3_NKX2-5:0.529181141691;LHX3,4:0.490667573444;PAX8:0.459198780145;IKZF1:0.452559440283;LEF1_TCF7_TCF7L1,2:0.4278869969;TFAP2{A,C}:0.40544435717;FOSL2:0.405061351356;ARID5B:0.387999162922;ZNF238:0.329542828449;TLX1..3_NFIC{dimer}:0.321893823587;NFIL3:0.318572930838;NFE2:0.281116110205;XCPE1{core}:0.261751304586;REST:0.246017138936;FOXM1:0.244815682714;PBX1:0.220962174928;MTF1:0.213529143545;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.184861263477;EBF1:0.182195132888;SOX17:0.1814695807;T:0.157535030232;GZF1:0.152651262395;NFE2L1:0.130025398645;PAX4:0.127540808171;NR1H4:0.123709389942;SP1:0.123177783758;AR:0.120261175931;GATA6:0.0392340804147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0358177542844;NFKB1_REL_RELA:0.0328369192321;POU5F1:0.0287891662689;NFIX:0.0257744271979;CDC5L:-0.00240587971539;RORA:-0.00558321020303;PITX1..3:-0.00870623031909;SMAD1..7,9:-0.0114021580676;POU3F1..4:-0.0130285720308;GCM1,2:-0.0350538186701;HMX1:-0.0401833774082;FOX{I1,J2}:-0.040634525011;ESRRA:-0.0593372779443;PAX2:-0.0646641670438;ELK1,4_GABP{A,B1}:-0.0703735819902;HNF1A:-0.0705310210362;RXRA_VDR{dimer}:-0.085264186526;POU6F1:-0.0891865722328;TFAP4:-0.0910365351378;HIF1A:-0.0927786120031;FOX{F1,F2,J1}:-0.105935074318;ZIC1..3:-0.109095704921;YY1:-0.126174149158;HNF4A_NR2F1,2:-0.142707899466;FOXQ1:-0.14379838093;HOX{A4,D4}:-0.154748148848;OCT4_SOX2{dimer}:-0.157371756862;JUN:-0.15952822649;ETS1,2:-0.189238549701;ATF2:-0.191697345139;FOXA2:-0.211140595665;SPZ1:-0.214588068742;ESR1:-0.2667485604;GFI1:-0.266817012983;NR3C1:-0.300621471384;RREB1:-0.322621707925;NFE2L2:-0.333836892551;ZBTB6:-0.343494038732;NKX2-1,4:-0.351717313347;SOX{8,9,10}:-0.353080258311;MYB:-0.35735425593;SPIB:-0.36148665715;HOX{A6,A7,B6,B7}:-0.373473762277;FOXL1:-0.402388382111;ATF5_CREB3:-0.417993057224;RFX1:-0.420102485636;RUNX1..3:-0.427111108884;STAT2,4,6:-0.436669822119;SOX2:-0.44914495627;NKX2-2,8:-0.462166147275;UFEwm:-0.472458561898;IRF7:-0.487644051735;TAL1_TCF{3,4,12}:-0.503003457269;MEF2{A,B,C,D}:-0.505099009004;ELF1,2,4:-0.5182708449;CREB1:-0.530601710128;KLF4:-0.532795862175;SPI1:-0.537112791418;HIC1:-0.552926040695;GTF2I:-0.566526222002;CUX2:-0.577621280672;TEF:-0.582499328766;MAFB:-0.584125299332;PRRX1,2:-0.584611625038;SRF:-0.598140425607;MAZ:-0.598156397382;ZNF143:-0.602861824104;ATF4:-0.632777465341;PAX6:-0.634012109212;HOXA9_MEIS1:-0.64744966239;NR6A1:-0.648555681204;NFY{A,B,C}:-0.661046242953;SOX5:-0.674548016252;EN1,2:-0.687620773949;TFAP2B:-0.693403188191;TLX2:-0.699653620366;ALX4:-0.702320008717;E2F1..5:-0.709292639925;MYFfamily:-0.720125678341;RFX2..5_RFXANK_RFXAP:-0.753910196365;NHLH1,2:-0.771796149883;MED-1{core}:-0.774801556888;TFDP1:-0.833654634964;XBP1:-0.847938166393;NFATC1..3:-0.85475849286;AHR_ARNT_ARNT2:-0.858855310608;RXR{A,B,G}:-0.910152868235;FOX{D1,D2}:-0.914925749413;RBPJ:-0.92926143841;FOXP3:-0.935134698407;DBP:-0.974390970833;ZNF384:-0.991882483708;TOPORS:-1.00105765833;NRF1:-1.01068596919;AIRE:-1.03009233398;MYBL2:-1.03196879405;TGIF1:-1.09116329454;PAX5:-1.09122426457;EGR1..3:-1.1188096884;MTE{core}:-1.12278400691;ATF6:-1.12537021971;EVI1:-1.13391596374;ZFP161:-1.16572052359;ALX1:-1.20175936104;PRDM1:-1.20919349199;ZBTB16:-1.22428305271;FOXN1:-1.23856772235;GATA4:-1.25176021173;HSF1,2:-1.26207511226;NANOG{mouse}:-1.32167654529;IRF1,2:-1.36608058307;CDX1,2,4:-1.36998885784;MZF1:-1.39927336514;PATZ1:-1.40796767205;BREu{core}:-1.43105137943;SREBF1,2:-1.52308317794;NKX6-1,2:-1.60204276116;FOXO1,3,4:-1.60666976731;HMGA1,2:-1.61438080543;STAT1,3:-1.62193571527;FOXP1:-1.63390786529;DMAP1_NCOR{1,2}_SMARC:-1.64240707619;BPTF:-1.65026279534;NKX3-1:-1.67138756753;PAX3,7:-1.71347822164;HBP1_HMGB_SSRP1_UBTF:-2.07136949864;FOXD3:-2.44737900181;IKZF2:-2.64194737002 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11349-117G8;search_select_hide=table117:FF:11349-117G8 | |||
}} | }} |
Latest revision as of 17:54, 4 June 2020
Name: | Keratinocyte - epidermal, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11381 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11381
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11381
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.26 |
10 | 10 | 0.706 |
100 | 100 | 0.528 |
101 | 101 | 0.584 |
102 | 102 | 0.466 |
103 | 103 | 0.0815 |
104 | 104 | 0.291 |
105 | 105 | 0.015 |
106 | 106 | 0.0225 |
107 | 107 | 0.0298 |
108 | 108 | 0.422 |
109 | 109 | 0.0103 |
11 | 11 | 0.0883 |
110 | 110 | 0.0931 |
111 | 111 | 0.492 |
112 | 112 | 0.34 |
113 | 113 | 0.649 |
114 | 114 | 0.149 |
115 | 115 | 0.925 |
116 | 116 | 0.385 |
117 | 117 | 0.251 |
118 | 118 | 0.714 |
119 | 119 | 0.164 |
12 | 12 | 0.457 |
120 | 120 | 0.233 |
121 | 121 | 0.642 |
122 | 122 | 0.156 |
123 | 123 | 0.471 |
124 | 124 | 0.758 |
125 | 125 | 0.29 |
126 | 126 | 0.596 |
127 | 127 | 0.0464 |
128 | 128 | 0.199 |
129 | 129 | 0.183 |
13 | 13 | 0.0574 |
130 | 130 | 0.977 |
131 | 131 | 0.334 |
132 | 132 | 0.76 |
133 | 133 | 0.0248 |
134 | 134 | 0.326 |
135 | 135 | 0.609 |
136 | 136 | 0.626 |
137 | 137 | 0.994 |
138 | 138 | 0.284 |
139 | 139 | 0.133 |
14 | 14 | 0.847 |
140 | 140 | 0.219 |
141 | 141 | 0.205 |
142 | 142 | 0.116 |
143 | 143 | 0.128 |
144 | 144 | 0.64 |
145 | 145 | 0.124 |
146 | 146 | 0.044 |
147 | 147 | 0.359 |
148 | 148 | 0.906 |
149 | 149 | 0.556 |
15 | 15 | 0.19 |
150 | 150 | 0.289 |
151 | 151 | 0.345 |
152 | 152 | 0.0439 |
153 | 153 | 0.612 |
154 | 154 | 0.996 |
155 | 155 | 0.677 |
156 | 156 | 0.299 |
157 | 157 | 0.665 |
158 | 158 | 0.568 |
159 | 159 | 0.74 |
16 | 16 | 0.0915 |
160 | 160 | 0.0723 |
161 | 161 | 0.315 |
162 | 162 | 0.134 |
163 | 163 | 0.541 |
164 | 164 | 0.466 |
165 | 165 | 0.985 |
166 | 166 | 0.815 |
167 | 167 | 0.243 |
168 | 168 | 0.397 |
169 | 169 | 0.0461 |
17 | 17 | 0.136 |
18 | 18 | 0.0316 |
19 | 19 | 0.38 |
2 | 2 | 0.239 |
20 | 20 | 0.93 |
21 | 21 | 0.673 |
22 | 22 | 0.223 |
23 | 23 | 0.244 |
24 | 24 | 0.0998 |
25 | 25 | 0.948 |
26 | 26 | 0.19 |
27 | 27 | 0.383 |
28 | 28 | 0.693 |
29 | 29 | 0.324 |
3 | 3 | 0.333 |
30 | 30 | 0.349 |
31 | 31 | 0.545 |
32 | 32 | 0.511 |
33 | 33 | 0.246 |
34 | 34 | 0.579 |
35 | 35 | 0.879 |
36 | 36 | 0.322 |
37 | 37 | 0.232 |
38 | 38 | 0.261 |
39 | 39 | 0.304 |
4 | 4 | 0.431 |
40 | 40 | 0.01 |
41 | 41 | 0.657 |
42 | 42 | 0.453 |
43 | 43 | 0.208 |
44 | 44 | 0.666 |
45 | 45 | 0.264 |
46 | 46 | 0.164 |
47 | 47 | 0.219 |
48 | 48 | 0.0965 |
49 | 49 | 0.273 |
5 | 5 | 0.478 |
50 | 50 | 0.573 |
51 | 51 | 0.611 |
52 | 52 | 0.34 |
53 | 53 | 1 |
54 | 54 | 0.62 |
55 | 55 | 0.462 |
56 | 56 | 0.26 |
57 | 57 | 0.121 |
58 | 58 | 0.456 |
59 | 59 | 0.0736 |
6 | 6 | 0.859 |
60 | 60 | 0.0751 |
61 | 61 | 0.501 |
62 | 62 | 0.451 |
63 | 63 | 0.115 |
64 | 64 | 0.209 |
65 | 65 | 0.148 |
66 | 66 | 0.327 |
67 | 67 | 0.671 |
68 | 68 | 0.828 |
69 | 69 | 0.102 |
7 | 7 | 0.2 |
70 | 70 | 0.00229 |
71 | 71 | 0.0795 |
72 | 72 | 0.625 |
73 | 73 | 0.0339 |
74 | 74 | 0.105 |
75 | 75 | 0.129 |
76 | 76 | 0.919 |
77 | 77 | 0.0539 |
78 | 78 | 0.197 |
79 | 79 | 0.928 |
8 | 8 | 0.0896 |
80 | 80 | 0.548 |
81 | 81 | 0.608 |
82 | 82 | 0.368 |
83 | 83 | 0.645 |
84 | 84 | 0.552 |
85 | 85 | 0.128 |
86 | 86 | 0.958 |
87 | 87 | 0.121 |
88 | 88 | 0.214 |
89 | 89 | 0.0125 |
9 | 9 | 0.656 |
90 | 90 | 0.882 |
91 | 91 | 0.477 |
92 | 92 | 0.417 |
93 | 93 | 0.886 |
94 | 94 | 0.532 |
95 | 95 | 0.0931 |
96 | 96 | 0.803 |
97 | 97 | 0.927 |
98 | 98 | 0.0753 |
99 | 99 | 0.07 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11381
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)