Personal tools

Coexpression cluster:C72: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{
|full_id=C72_skeletal_tongue_throat_heart_diaphragm_penis_left
 

Latest revision as of 10:24, 17 September 2013


Full id: C72_skeletal_tongue_throat_heart_diaphragm_penis_left



Phase1 CAGE Peaks

Hg19::chr10:104535994..104536014,+p4@C10orf26
Hg19::chr10:104536050..104536059,+p18@C10orf26
Hg19::chr10:115423792..115423806,-p1@NRAP
Hg19::chr10:123778989..123779000,+p52@TACC2
Hg19::chr10:123954672..123954673,+p@chr10:123954672..123954673
+
Hg19::chr10:134649885..134649921,-p@chr10:134649885..134649921
-
Hg19::chr10:29918007..29918031,-p@chr10:29918007..29918031
-
Hg19::chr10:29923893..29923907,-p1@SVIL
Hg19::chr10:50507232..50507257,+p1@C10orf71
Hg19::chr10:50507262..50507282,+p3@C10orf71
Hg19::chr10:6557469..6557474,-p4@PRKCQ
Hg19::chr10:72141310..72141325,-p5@LRRC20
Hg19::chr10:75226182..75226220,-p3@PPP3CB
Hg19::chr10:76868808..76868825,-p5@DUSP13
Hg19::chr10:97037060..97037066,-p@chr10:97037060..97037066
-
Hg19::chr10:99127126..99127145,-p5@RRP12
Hg19::chr11:10920793..10920806,-p2@uc001mjn.1
Hg19::chr11:126077493..126077505,-p3@RPUSD4
Hg19::chr11:17410660..17410710,-p3@KCNJ11
Hg19::chr11:64514748..64514770,-p@chr11:64514748..64514770
-
Hg19::chr11:64518023..64518030,-p19@PYGM
Hg19::chr11:73720122..73720136,-p1@UCP3
Hg19::chr12:102020657..102020663,+p8@MYBPC1
Hg19::chr12:102057261..102057282,+p@chr12:102057261..102057282
+
Hg19::chr12:102079632..102079647,-p@chr12:102079632..102079647
-
Hg19::chr12:10870989..10871013,-p11@CSDA
Hg19::chr12:10871020..10871032,-p26@CSDA
Hg19::chr12:10871049..10871064,-p19@CSDA
Hg19::chr12:10871068..10871079,-p25@CSDA
Hg19::chr12:10875658..10875708,-p2@CSDA
Hg19::chr12:10875831..10876025,-p1@CSDA
Hg19::chr12:10876282..10876288,-p29@CSDA
Hg19::chr12:122884443..122884457,-p21@CLIP1
Hg19::chr12:122884464..122884467,-p38@CLIP1
Hg19::chr12:122884488..122884502,-p24@CLIP1
Hg19::chr12:122884508..122884523,-p15@CLIP1
Hg19::chr12:32654965..32654977,+p15@FGD4
Hg19::chr12:48516441..48516454,+p6@PFKM
Hg19::chr12:48545157..48545170,-p4@ASB8
Hg19::chr12:57115098..57115135,-p@chr12:57115098..57115135
-
Hg19::chr12:67751652..67751685,-p@chr12:67751652..67751685
-
Hg19::chr12:68494798..68494815,-p@chr12:68494798..68494815
-
Hg19::chr12:81101312..81101321,+p6@MYF6
Hg19::chr12:81101442..81101449,+p3@MYF6
Hg19::chr12:81101462..81101467,+p4@MYF6
Hg19::chr12:81101472..81101483,+p2@MYF6
Hg19::chr12:81101723..81101726,+p10@MYF6
Hg19::chr12:81101753..81101762,+p5@MYF6
Hg19::chr12:96408839..96408854,-p@chr12:96408839..96408854
-
Hg19::chr13:21289714..21289723,+p20@IL17D
Hg19::chr13:21289746..21289769,+p2@IL17D
Hg19::chr13:21387250..21387271,-p@chr13:21387250..21387271
-
Hg19::chr13:21395866..21395879,-p6@XPO4
Hg19::chr13:21395886..21395893,-p7@XPO4
Hg19::chr13:21401247..21401280,-p@chr13:21401247..21401280
-
Hg19::chr13:50961291..50961319,-p@chr13:50961291..50961319
-
Hg19::chr13:51101468..51101499,-p1@ENST00000428276
Hg19::chr14:24600714..24600729,+p3@FITM1
Hg19::chr14:56127960..56127979,+p23@KTN1
Hg19::chr14:56127989..56128008,+p19@KTN1
Hg19::chr14:64579805..64579812,+p@chr14:64579805..64579812
+
Hg19::chr14:64680854..64680891,+p2@SYNE2
Hg19::chr14:65289871..65289874,-p8@SPTB
Hg19::chr14:94430858..94430887,-p@chr14:94430858..94430887
-
Hg19::chr14:94442896..94442930,-p1@ASB2
Hg19::chr15:51058024..51058028,-p3@SPPL2A
Hg19::chr15:56209487..56209498,-p13@NEDD4
Hg19::chr15:99548751..99548758,-p5@PGPEP1L
Hg19::chr15:99548861..99548881,-p4@PGPEP1L
Hg19::chr16:7382840..7382860,+p3@RBFOX1
Hg19::chr17:10421962..10421969,-p2@MYH1
Hg19::chr17:25904420..25904463,+p3@KSR1
Hg19::chr17:33640586..33640597,+p@chr17:33640586..33640597
+
Hg19::chr17:33640639..33640650,+p@chr17:33640639..33640650
+
Hg19::chr17:37822491..37822502,-p@chr17:37822491..37822502
-
Hg19::chr17:38171959..38171970,+p6@CSF3
Hg19::chr17:42248036..42248054,+p2@ASB16
Hg19::chr17:55601633..55601643,+p@chr17:55601633..55601643
+
Hg19::chr17:65052469..65052491,+p6@CACNG1
Hg19::chr17:79792918..79792932,-p1@PPP1R27
Hg19::chr18:32487085..32487092,-p@chr18:32487085..32487092
-
Hg19::chr18:55922965..55922972,+p@chr18:55922965..55922972
+
Hg19::chr19:14673282..14673294,+p14@TECR
Hg19::chr19:35521675..35521684,+p8@SCN1B
Hg19::chr19:38664309..38664322,+p@chr19:38664309..38664322
+
Hg19::chr19:38924316..38924346,+p1@RYR1
Hg19::chr19:38932979..38933014,+p@chr19:38932979..38933014
+
Hg19::chr19:40324017..40324030,-p@chr19:40324017..40324030
-
Hg19::chr19:40324034..40324066,-p@chr19:40324034..40324066
-
Hg19::chr19:40771997..40772002,-p25@AKT2
Hg19::chr19:4791722..4791764,+p1@FEM1A
Hg19::chr19:4793532..4793537,+p5@FEM1A
Hg19::chr19:50996327..50996328,-p@chr19:50996327..50996328
-
Hg19::chr19:55660468..55660472,-p@chr19:55660468..55660472
-
Hg19::chr1:115238140..115238153,-p2@AMPD1
Hg19::chr1:115238154..115238174,-p1@AMPD1
Hg19::chr1:118363660..118363674,-p@chr1:118363660..118363674
-
Hg19::chr1:151148497..151148512,-p2@TMOD4
Hg19::chr1:160160421..160160424,+p7@CASQ1
Hg19::chr1:160160431..160160442,+p5@CASQ1
Hg19::chr1:160171297..160171308,+p@chr1:160171297..160171308
+
Hg19::chr1:201081548..201081569,-p1@CACNA1S
Hg19::chr1:201081583..201081592,-p2@CACNA1S
Hg19::chr1:201378284..201378297,-p@chr1:201378284..201378297
-
Hg19::chr1:201390850..201390865,-p1@TNNI1
Hg19::chr1:201391293..201391300,-p6@TNNI1
Hg19::chr1:225712376..225712390,-p@chr1:225712376..225712390
-
Hg19::chr1:225888421..225888432,+p2@ENST00000448264
p2@uc001hpe.1
Hg19::chr1:229568418..229568436,-p@chr1:229568418..229568436
-
Hg19::chr1:229568439..229568458,-p@chr1:229568439..229568458
-
Hg19::chr1:231557409..231557418,-p23@EGLN1
Hg19::chr1:231558425..231558448,-p@chr1:231558425..231558448
-
Hg19::chr1:231558449..231558469,-p@chr1:231558449..231558469
-
Hg19::chr1:231558471..231558476,-p@chr1:231558471..231558476
-
Hg19::chr1:231558483..231558511,-p@chr1:231558483..231558511
-
Hg19::chr1:24422589..24422609,+p@chr1:24422589..24422609
+
Hg19::chr1:26394114..26394130,-p1@TRIM63
Hg19::chr1:44186258..44186263,-p@chr1:44186258..44186263
-
Hg19::chr1:64013603..64013614,+p6@EFCAB7
Hg19::chr1:64013668..64013680,+p7@EFCAB7
Hg19::chr1:64013703..64013712,+p11@EFCAB7
Hg19::chr1:66796212..66796231,+p29@PDE4B
Hg19::chr1:9129853..9129865,-p18@SLC2A5
Hg19::chr1:93586380..93586411,+p8@MTF2
Hg19::chr20:20057067..20057076,-p1@LOC643659
Hg19::chr20:20069786..20069797,-p@chr20:20069786..20069797
-
Hg19::chr20:36152822..36152833,-p14@BLCAP
Hg19::chr20:36152914..36152926,-p8@BLCAP
Hg19::chr20:62124546..62124576,-p@chr20:62124546..62124576
-
Hg19::chr20:62129163..62129193,-p5@EEF1A2
Hg19::chr21:47769234..47769239,+p@chr21:47769234..47769239
+
Hg19::chr22:25507371..25507375,+p@chr22:25507371..25507375
+
Hg19::chr22:25508672..25508687,-p1@LOC100128531
Hg19::chr22:28193943..28193956,-p@chr22:28193943..28193956
-
Hg19::chr2:141004685..141004710,-p@chr2:141004685..141004710
-
Hg19::chr2:152381100..152381108,-p@chr2:152381100..152381108
-
Hg19::chr2:152383493..152383501,-p@chr2:152383493..152383501
-
Hg19::chr2:152393686..152393693,-p@chr2:152393686..152393693
-
Hg19::chr2:152432736..152432741,-p@chr2:152432736..152432741
-
Hg19::chr2:152470910..152470923,-p@chr2:152470910..152470923
-
Hg19::chr2:152527650..152527659,-p20@NEB
Hg19::chr2:152590465..152590472,-p@chr2:152590465..152590472
-
Hg19::chr2:152590502..152590507,-p@chr2:152590502..152590507
-
Hg19::chr2:168043855..168043866,+p2@XIRP2
Hg19::chr2:168043874..168043891,+p1@XIRP2
Hg19::chr2:168099250..168099268,+p11@XIRP2
Hg19::chr2:168102459..168102468,+p73@XIRP2
Hg19::chr2:168106863..168106864,+p99@XIRP2
Hg19::chr2:170366203..170366225,+p1@KBTBD10
Hg19::chr2:170370682..170370697,+p4@KBTBD10
Hg19::chr2:170374754..170374760,+p@chr2:170374754..170374760
+
Hg19::chr2:179128213..179128216,+p@chr2:179128213..179128216
+
Hg19::chr2:179396338..179396348,-p@chr2:179396338..179396348
-
Hg19::chr2:179401894..179401905,-p@chr2:179401894..179401905
-
Hg19::chr2:179441728..179441742,-p@chr2:179441728..179441742
-
Hg19::chr2:179444787..179444797,-p@chr2:179444787..179444797
-
Hg19::chr2:179446736..179446745,-p119@TTN
Hg19::chr2:179457343..179457356,-p@chr2:179457343..179457356
-
Hg19::chr2:179469980..179469991,-p@chr2:179469980..179469991
-
Hg19::chr2:179659944..179659966,-p12@TTN
Hg19::chr2:179664253..179664278,-p@chr2:179664253..179664278
-
Hg19::chr2:179664332..179664350,-p@chr2:179664332..179664350
-
Hg19::chr2:179672142..179672157,-p1@TTN
Hg19::chr2:220299547..220299572,+p3@SPEG
Hg19::chr2:233390863..233390878,+p1@CHRND
Hg19::chr2:233393025..233393037,+p@chr2:233393025..233393037
+
Hg19::chr2:239047304..239047335,+p1@KLHL30
Hg19::chr2:239047337..239047362,+p2@KLHL30
Hg19::chr2:29398214..29398229,+p27@CLIP4
Hg19::chr3:10512714..10512741,-p@chr3:10512714..10512741
-
Hg19::chr3:119338227..119338252,+p@chr3:119338227..119338252
+
Hg19::chr3:119338393..119338397,+p@chr3:119338393..119338397
+
Hg19::chr3:141132014..141132021,+p@chr3:141132014..141132021
+
Hg19::chr3:141148377..141148401,+p@chr3:141148377..141148401
+
Hg19::chr3:155011483..155011495,-p1@LOC100507537
Hg19::chr3:155011771..155011808,-p1@ENST00000489090
Hg19::chr3:39230861..39230875,-p3@XIRP1
Hg19::chr3:39230927..39230934,-p25@XIRP1
Hg19::chr3:42084467..42084485,+p@chr3:42084467..42084485
+
Hg19::chr3:42084492..42084507,+p@chr3:42084492..42084507
+
Hg19::chr3:46607722..46607747,-p2@LRRC2
Hg19::chr3:48057857..48057863,-p56@MAP4
Hg19::chr3:48057877..48057888,-p37@MAP4
Hg19::chr3:48972313..48972330,+p@chr3:48972313..48972330
+
Hg19::chr3:5024621..5024658,+p@chr3:5024621..5024658
+
Hg19::chr3:52485802..52485823,+p@chr3:52485802..52485823
+
Hg19::chr3:69168368..69168389,-p@chr3:69168368..69168389
-
Hg19::chr3:69168395..69168418,-p@chr3:69168395..69168418
-
Hg19::chr3:69168465..69168472,-p@chr3:69168465..69168472
-
Hg19::chr3:99833172..99833179,-p24@FILIP1L
Hg19::chr4:100575726..100575740,-p@chr4:100575726..100575740
-
Hg19::chr4:186434325..186434339,-p@chr4:186434325..186434339
-
Hg19::chr4:186434340..186434350,-p@chr4:186434340..186434350
-
Hg19::chr4:186499610..186499623,-p@chr4:186499610..186499623
-
Hg19::chr4:44653613..44653624,-p5@YIPF7
Hg19::chr4:44653636..44653647,-p4@YIPF7
Hg19::chr4:8129363..8129374,-p4@ABLIM2
Hg19::chr4:8129425..8129427,-p19@ABLIM2
Hg19::chr5:138730817..138730838,-p2@C5orf65
Hg19::chr5:145363278..145363284,+p@chr5:145363278..145363284
+
Hg19::chr5:150027785..150027800,+p4@AB384087
Hg19::chr5:150727066..150727082,-p2@SLC36A2
Hg19::chr5:16508944..16508960,-p5@FAM134B
Hg19::chr5:58652758..58652767,-p52@PDE4D
Hg19::chr5:58652888..58652893,-p73@PDE4D
Hg19::chr5:79026427..79026439,+p@chr5:79026427..79026439
+
Hg19::chr5:95174061..95174068,+p@chr5:95174061..95174068
+
Hg19::chr5:95179965..95179971,+p@chr5:95179965..95179971
+
Hg19::chr5:95179988..95179991,+p@chr5:95179988..95179991
+
Hg19::chr5:95180071..95180077,+p@chr5:95180071..95180077
+
Hg19::chr5:95180155..95180172,+p@chr5:95180155..95180172
+
Hg19::chr6:118985968..118985983,+p@chr6:118985968..118985983
+
Hg19::chr6:123958371..123958380,-p12@TRDN
Hg19::chr6:125535391..125535409,+p@chr6:125535391..125535409
+
Hg19::chr6:139613079..139613086,-p5@TXLNB
Hg19::chr6:139613101..139613118,-p2@TXLNB
Hg19::chr6:17280583..17280593,+p@chr6:17280583..17280593
+
Hg19::chr6:17280605..17280637,+p@chr6:17280605..17280637
+
Hg19::chr6:17280912..17280921,+p@chr6:17280912..17280921
+
Hg19::chr6:17290080..17290094,+p8@RBM24
Hg19::chr6:17290247..17290256,+p18@RBM24
Hg19::chr6:45983517..45983534,-p4@CLIC5
Hg19::chr6:45983549..45983578,-p2@CLIC5
Hg19::chr6:89856542..89856550,-p@chr6:89856542..89856550
-
Hg19::chr6:89856579..89856590,-p@chr6:89856579..89856590
-
Hg19::chr6:89856603..89856608,-p@chr6:89856603..89856608
-
Hg19::chr7:101944503..101944523,+p@chr7:101944503..101944523
+
Hg19::chr7:123295911..123295926,+p1@LMOD2
Hg19::chr7:50713346..50713354,-p@chr7:50713346..50713354
-
Hg19::chr7:7728987..7728990,+p@chr7:7728987..7728990
+
Hg19::chr8:124033810..124033819,-p@chr8:124033810..124033819
-
Hg19::chr8:124665857..124665868,-p@chr8:124665857..124665868
-
Hg19::chr8:124665891..124665894,-p@chr8:124665891..124665894
-
Hg19::chr8:124665957..124665968,-p@chr8:124665957..124665968
-
Hg19::chr8:124665971..124665974,-p@chr8:124665971..124665974
-
Hg19::chr8:17611435..17611446,-p41@MTUS1
Hg19::chr8:22785524..22785532,-p5@PEBP4
Hg19::chr8:33455219..33455228,-p9@DUSP26
Hg19::chr8:33457258..33457299,-p2@DUSP26
Hg19::chr8:42358586..42358595,-p21@SLC20A2
Hg19::chr8:48566633..48566645,+p17@KIAA0146
Hg19::chr8:48566659..48566670,+p16@KIAA0146
Hg19::chr8:49984690..49984720,+p3@C8orf22
Hg19::chr8:49984894..49984911,+p1@C8orf22
Hg19::chr9:103340319..103340320,+p7@MURC
Hg19::chr9:112182901..112182913,-p@chr9:112182901..112182913
-
Hg19::chr9:112183748..112183770,-p@chr9:112183748..112183770
-
Hg19::chr9:114246121..114246166,-p4@KIAA0368
Hg19::chrX:135278908..135278922,+p39@FHL1
Hg19::chrX:135279051..135279063,+p29@FHL1
Hg19::chrX:135289300..135289316,+p20@FHL1
Hg19::chrX:150041491..150041517,-p@chrX:150041491..150041517
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
6.10106398273766e-060.00386197350107294439Striated Muscle Contraction (Wikipathways):WP383
1.53553120835892e-050.00485995627445598449Muscle contraction (Reactome):REACT_17044



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006936muscle contraction4.71780622765726e-13
GO:0003012muscle system process4.71780622765726e-13
GO:0008092cytoskeletal protein binding4.80348745343815e-10
GO:0005856cytoskeleton1.10525164910753e-08
GO:0043292contractile fiber1.10525164910753e-08
GO:0003779actin binding1.59181340812528e-08
GO:0030016myofibril1.52750872858223e-07
GO:0044449contractile fiber part2.88089018463705e-07
GO:0005737cytoplasm3.19969802893113e-07
GO:0015629actin cytoskeleton9.28343023555808e-07
GO:0006941striated muscle contraction9.60050066496648e-07
GO:0043228non-membrane-bound organelle1.11647385590458e-06
GO:0043232intracellular non-membrane-bound organelle1.11647385590458e-06
GO:0030017sarcomere2.91006654844817e-06
GO:0044444cytoplasmic part1.59373741575407e-05
GO:0044430cytoskeletal part2.10350400668807e-05
GO:0007517muscle development7.39952479970909e-05
GO:0005515protein binding0.000123889876503251
GO:0032501multicellular organismal process0.000132708827171224
GO:0005626insoluble fraction0.000348801263931253
GO:0005523tropomyosin binding0.00038696732543958
GO:0051393alpha-actinin binding0.000415003140747196
GO:0003008system process0.000562331685675669
GO:0000267cell fraction0.000574835885879634
GO:0042805actinin binding0.00121400091885135
GO:0051128regulation of cellular component organization and biogenesis0.00164998697279683
GO:00041153',5'-cyclic-AMP phosphodiesterase activity0.00219001172961378
GO:0015270dihydropyridine-sensitive calcium channel activity0.00219001172961378
GO:0044424intracellular part0.00219001172961378
GO:0022836gated channel activity0.00219001172961378
GO:0008307structural constituent of muscle0.00219001172961378
GO:0007010cytoskeleton organization and biogenesis0.00219001172961378
GO:0015630microtubule cytoskeleton0.00237390257288476
GO:0051261protein depolymerization0.00255112441499983
GO:0030832regulation of actin filament length0.00255112441499983
GO:0032535regulation of cellular component size0.00257385019430711
GO:0032956regulation of actin cytoskeleton organization and biogenesis0.00257385019430711
GO:0005813centrosome0.00302637363172356
GO:0030036actin cytoskeleton organization and biogenesis0.00322034012142042
GO:0051129negative regulation of cellular component organization and biogenesis0.00322034012142042
GO:0043687post-translational protein modification0.00364982554883671
GO:0030029actin filament-based process0.00364982554883671
GO:0033043regulation of organelle organization and biogenesis0.00364982554883671
GO:0051493regulation of cytoskeleton organization and biogenesis0.00364982554883671
GO:0043412biopolymer modification0.00397619239306852
GO:0005261cation channel activity0.0040325499629083
GO:0005815microtubule organizing center0.0040325499629083
GO:0005790smooth endoplasmic reticulum0.00413319883702199
GO:0030018Z disc0.00545874206205575
GO:0007519skeletal muscle development0.00545874206205575
GO:0043229intracellular organelle0.00667615324188191
GO:0032982myosin filament0.00667615324188191
GO:0005863striated muscle thick filament0.00667615324188191
GO:0043226organelle0.00667615324188191
GO:0031674I band0.00729955721247181
GO:0005216ion channel activity0.00729955721247181
GO:0005624membrane fraction0.00729955721247181
GO:0022832voltage-gated channel activity0.00729955721247181
GO:0005244voltage-gated ion channel activity0.00729955721247181
GO:0022838substrate specific channel activity0.00738676379197793
GO:0046873metal ion transmembrane transporter activity0.00757041830826794
GO:0022803passive transmembrane transporter activity0.00759204471381507
GO:0015267channel activity0.00759204471381507
GO:0006464protein modification process0.00761312902011161
GO:0014706striated muscle development0.00923653099126956
GO:0051693actin filament capping0.00923653099126956
GO:0051016barbed-end actin filament capping0.00923653099126956
GO:0065008regulation of biological quality0.00923653099126956
GO:0030835negative regulation of actin filament depolymerization0.00978453731110029
GO:0005248voltage-gated sodium channel activity0.00978453731110029
GO:0030834regulation of actin filament depolymerization0.0102162713259087
GO:0030042actin filament depolymerization0.0102162713259087
GO:0043161proteasomal ubiquitin-dependent protein catabolic process0.0102162713259087
GO:0006512ubiquitin cycle0.0102162713259087
GO:0005859muscle myosin complex0.0115045985346233
GO:0016528sarcoplasm0.0115045985346233
GO:0016529sarcoplasmic reticulum0.0115045985346233
GO:0016460myosin II complex0.0122866854236638
GO:0051248negative regulation of protein metabolic process0.0124175603495476
GO:0044446intracellular organelle part0.0131669436439726
GO:0044422organelle part0.0135033263070627
GO:0043234protein complex0.014746835800996
GO:0005262calcium channel activity0.0168001239796566
GO:0031432titin binding0.0168001239796566
GO:0005130granulocyte colony-stimulating factor receptor binding0.0168001239796566
GO:0015755fructose transport0.0168001239796566
GO:0022843voltage-gated cation channel activity0.0168001239796566
GO:0005622intracellular0.0168001239796566
GO:0006811ion transport0.0178833616688749
GO:0009892negative regulation of metabolic process0.017984009377158
GO:0008324cation transmembrane transporter activity0.0186624188117122
GO:0048523negative regulation of cellular process0.0206785466930507
GO:0005891voltage-gated calcium channel complex0.0206785466930507
GO:0048513organ development0.0206785466930507
GO:0051015actin filament binding0.0225951056945113
GO:0005516calmodulin binding0.0242672502478497
GO:0048519negative regulation of biological process0.0248333300298026
GO:0008064regulation of actin polymerization and/or depolymerization0.0277726489503542
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.028561141721818
GO:0005927muscle tendon junction0.028561141721818
GO:0008184glycogen phosphorylase activity0.028561141721818
GO:0051371muscle alpha-actinin binding0.028561141721818
GO:0005977glycogen metabolic process0.0297827758821279
GO:0004112cyclic-nucleotide phosphodiesterase activity0.0297827758821279
GO:0006073glucan metabolic process0.0307397024964582
GO:0022891substrate-specific transmembrane transporter activity0.0308174718294037
GO:0006996organelle organization and biogenesis0.031183611676447
GO:0006112energy reserve metabolic process0.0389703584237744
GO:0005218intracellular ligand-gated calcium channel activity0.0393269337737831
GO:0005353fructose transmembrane transporter activity0.0393269337737831
GO:0005219ryanodine-sensitive calcium-release channel activity0.0393269337737831
GO:0005272sodium channel activity0.0402774717560184
GO:0015075ion transmembrane transporter activity0.0411999819333484
GO:0006816calcium ion transport0.0416278925607318
GO:0019992diacylglycerol binding0.0416278925607318
GO:0044260cellular macromolecule metabolic process0.0416278925607318
GO:0008154actin polymerization and/or depolymerization0.0434972830287973
GO:0042578phosphoric ester hydrolase activity0.0434972830287973
GO:0022857transmembrane transporter activity0.0434972830287973
GO:0008138protein tyrosine/serine/threonine phosphatase activity0.0443840293604972
GO:0033018sarcoplasmic reticulum lumen0.0443840293604972
GO:0032364oxygen homeostasis0.0443840293604972
GO:0001892embryonic placenta development0.0443840293604972
GO:0033483gas homeostasis0.0443840293604972
GO:0006110regulation of glycolysis0.0443840293604972
GO:0005315inorganic phosphate transmembrane transporter activity0.0443840293604972
GO:0005955calcineurin complex0.0443840293604972
GO:0030851granulocyte differentiation0.0443840293604972
GO:0007525somatic muscle development0.0443840293604972
GO:0043034costamere0.0443840293604972
GO:0016068type I hypersensitivity0.0443840293604972
GO:0005245voltage-gated calcium channel activity0.0467031129380266
GO:0006812cation transport0.0478529649024454
GO:0048856anatomical structure development0.0486770779119948



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
muscle structure6.02e-302
muscle organ6.02e-302
throat1.92e-292
tongue4.43e-203
gustatory system4.43e-203
future tongue4.43e-203
hindlimb bud6.44e-161
soleus muscle6.44e-161
appendage6.44e-161
lower limb segment6.44e-161
multi-limb segment region6.44e-161
hindlimb muscle6.44e-161
hindlimb zeugopod muscle6.44e-161
paired limb/fin6.44e-161
limb6.44e-161
pelvic appendage6.44e-161
limb segment6.44e-161
paired limb/fin segment6.44e-161
limb muscle6.44e-161
pelvic complex muscle6.44e-161
zeugopod6.44e-161
muscle of leg6.44e-161
paired limb/fin bud6.44e-161
limb bud6.44e-161
pelvic appendage bud6.44e-161
limb/fin field6.44e-161
subdivision of organism along appendicular axis6.44e-161
appendage girdle complex6.44e-161
leg6.44e-161
hindlimb6.44e-161
triceps surae6.44e-161
hindlimb zeugopod6.44e-161
posterior region of body6.44e-161
pelvic complex6.44e-161
limb field6.44e-161
hindlimb/pelvic fin field6.44e-161
chest muscle7.46e-161
respiratory system muscle7.46e-161
skeletal muscle of trunk7.46e-161
respiratory system skeletal muscle7.46e-161
thoracic segment muscle7.46e-161
chest organ7.46e-161
muscle of trunk7.46e-161
diaphragm7.46e-161
future diaphragm7.46e-161
penis1.16e-151
intromittent organ1.16e-151
lateral plate mesenchyme1.16e-151
undifferentiated genital tubercle1.16e-151
somatopleure1.16e-151
epididymis2.06e-151
tonsil3.17e-151
mucosa-associated lymphoid tissue3.17e-151
lymphoid tissue3.17e-151
tonsillar ring3.17e-151
adult organism6.66e-14114
chordate pharynx2.16e-1310
pharyngeal region of foregut2.16e-1310
pharynx3.13e-1211
open tracheal system trachea2.67e-082
pharyngeal arch system1.11e-0718
upper respiratory tract2.59e-0719


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.17.21073e-11
MA0004.10.671448
MA0006.10.0808615
MA0007.10.556579
MA0009.10.112901
MA0014.11.4274e-10
MA0017.11.80399
MA0019.10.372251
MA0024.10.0473707
MA0025.11.11155
MA0027.11.05148
MA0028.10.0201574
MA0029.10.248769
MA0030.12.15359
MA0031.12.0062
MA0038.10.157551
MA0040.10.425192
MA0041.10.376785
MA0042.10.350005
MA0043.10.931539
MA0046.11.20617
MA0048.10.0820563
MA0050.10.260564
MA0051.10.333271
MA0052.113.7611
MA0055.10.446421
MA0056.10
MA0057.10.0607324
MA0058.10.695611
MA0059.10.68531
MA0060.10.000186801
MA0061.10.00890839
MA0063.10
MA0066.10.633422
MA0067.10.533571
MA0068.10.996409
MA0069.10.216623
MA0070.10.201538
MA0071.10.328904
MA0072.11.45573
MA0073.10.0119282
MA0074.10.330815
MA0076.10.00212548
MA0077.10.00501957
MA0078.10.0937111
MA0081.10.449269
MA0083.10.671275
MA0084.10.466354
MA0087.10.192485
MA0088.10.0222007
MA0089.10
MA0090.10.800024
MA0091.10.850491
MA0092.10.356858
MA0093.10.566203
MA0095.10
MA0098.10
MA0100.10.06433
MA0101.10.00828165
MA0103.10.381644
MA0105.10.00336994
MA0106.10.245389
MA0107.10.0165956
MA0108.22.76189
MA0109.10
MA0111.10.490757
MA0113.12.37449
MA0114.10.35245
MA0115.12.0634
MA0116.10.165126
MA0117.10.0534375
MA0119.10.686609
MA0122.10.338742
MA0124.12.94187
MA0125.10.228518
MA0130.10
MA0131.10.00822364
MA0132.10
MA0133.10
MA0135.10.138827
MA0136.10.0290051
MA0139.10.0250026
MA0140.10.575435
MA0141.11.50559
MA0142.10.310172
MA0143.10.287284
MA0144.10.0649032
MA0145.10.0240189
MA0146.11.10654e-08
MA0147.10.363109
MA0148.11.02597
MA0149.10.00116298
MA0062.27.33761e-07
MA0035.20.571793
MA0039.23.25311e-08
MA0138.20.0195542
MA0002.20.0407434
MA0137.20.181858
MA0104.20.146028
MA0047.22.3742
MA0112.20.101457
MA0065.20.236781
MA0150.12.39084
MA0151.10
MA0152.10.241555
MA0153.10.40278
MA0154.10.613249
MA0155.10.0850028
MA0156.18.71771e-05
MA0157.11.24193
MA0158.10
MA0159.10.539565
MA0160.11.8716
MA0161.10
MA0162.11.44649e-15
MA0163.10.000335674
MA0164.10.320641
MA0080.20.000755383
MA0018.20.049083
MA0099.20.242529
MA0079.20
MA0102.20.173518
MA0258.11.13288
MA0259.10.216423
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
NFE2#477892.7463966239710.006205531471472340.0273875718960911



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C72&oldid=3067190"