FFCP PHASE1:Hg19::chr4:13546130..13546145,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=579 | |EntrezGene=579 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=951 | |HGNC=951 | ||
|TSSclassifier=strong | |||
|UniProt=P78367 | |UniProt=P78367 | ||
|association_with_transcript=-16bp_to_NM_001189,uc003gmx.2_5end | |association_with_transcript=-16bp_to_NM_001189,uc003gmx.2_5end | ||
|cluster_id=chr4:13546130..13546145,- | |||
|description=CAGE_peak_4_at_NKX3-2_5end | |description=CAGE_peak_4_at_NKX3-2_5end | ||
|id=chr4:13546130..13546145,- | |id=chr4:13546130..13546145,- | ||
|ontology_enrichment_celltype=CL:0002602;2.42e-50;2!CL:0002564;1.27e-33;3!CL:0002554;1.21e-13;2 | |ontology_enrichment_celltype=CL:0002564!8.19e-12!3;CL:0002504!3.53e-11!3;CL:1000279!3.53e-11!3;CL:1000280!3.53e-11!3;CL:0002602!1.32e-08!2 | ||
| | |ontology_enrichment_celltype_v019=CL:0002602;2.42e-50;2!CL:0002564;1.27e-33;3!CL:0002554;1.21e-13;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002602,1.46e-50,2;CL:0002564,2.09e-33,3;CL:0002554,1.21e-13,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0011135;8.68e-79;5!UBERON:0002216;8.68e-79;5!UBERON:0011134;8.68e-79;5!UBERON:0002209;8.68e-79;5!UBERON:0002213;8.68e-79;5!UBERON:0007844;8.68e-79;5!UBERON:0011138;8.68e-79;5!UBERON:0001130;8.68e-79;5!UBERON:0001066;8.68e-79;5!UBERON:0001468;8.68e-79;5!UBERON:0006444;2.42e-50;2!UBERON:0001995;2.42e-50;2!UBERON:0004715;2.42e-50;2!UBERON:0004905;1.50e-49;8!UBERON:0000982;1.50e-49;8!UBERON:0004770;1.50e-49;8!UBERON:0002418;5.50e-34;3!UBERON:0004755;5.50e-34;3!UBERON:0002242;1.27e-33;3!UBERON:0000075;4.06e-25;16!UBERON:0004765;1.13e-15;26!UBERON:0002114;1.53e-09;2!UBERON:0001434;2.24e-09;36!UBERON:0001052;1.44e-07;4 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002242!8.19e-12!3;UBERON:0003068!8.19e-12!3;UBERON:0002328!8.19e-12!3;UBERON:0004880!8.19e-12!3;UBERON:0002418!3.19e-11!3;UBERON:0004755!3.19e-11!3;UBERON:0000059!7.08e-11!11;UBERON:0005409!1.87e-09!35;UBERON:0001155!2.39e-09!9;UBERON:0009568!1.32e-08!2;UBERON:0002216!1.32e-08!2;UBERON:0002209!1.32e-08!2;UBERON:0002213!1.32e-08!2;UBERON:0004267!1.32e-08!2;UBERON:0006444!1.32e-08!2;UBERON:0001995!1.32e-08!2;UBERON:0004715!1.32e-08!2;UBERON:0001468!1.32e-08!2;UBERON:0001130!1.32e-08!2;UBERON:0001066!1.32e-08!2;UBERON:0000160!1.88e-08!27;UBERON:0003127!2.15e-07!2;UBERON:0004905!3.12e-07!5;UBERON:0000982!3.12e-07!5;UBERON:0004770!3.12e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;8.68e-79;5!UBERON:0002216;8.68e-79;5!UBERON:0011134;8.68e-79;5!UBERON:0002209;8.68e-79;5!UBERON:0002213;8.68e-79;5!UBERON:0007844;8.68e-79;5!UBERON:0011138;8.68e-79;5!UBERON:0001130;8.68e-79;5!UBERON:0001066;8.68e-79;5!UBERON:0001468;8.68e-79;5!UBERON:0006444;2.42e-50;2!UBERON:0001995;2.42e-50;2!UBERON:0004715;2.42e-50;2!UBERON:0004905;1.50e-49;8!UBERON:0000982;1.50e-49;8!UBERON:0004770;1.50e-49;8!UBERON:0002418;5.50e-34;3!UBERON:0004755;5.50e-34;3!UBERON:0002242;1.27e-33;3!UBERON:0000075;4.06e-25;16!UBERON:0004765;1.13e-15;26!UBERON:0002114;1.53e-09;2!UBERON:0001434;2.24e-09;36!UBERON:0001052;1.44e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.06e-78,5;UBERON:0002216,1.06e-78,5;UBERON:0011134,1.06e-78,5;UBERON:0002209,1.06e-78,5;UBERON:0002213,1.06e-78,5;UBERON:0005856,1.06e-78,5;UBERON:0005866,1.06e-78,5;UBERON:0005863,1.06e-78,5;UBERON:0007844,1.06e-78,5;UBERON:0011138,1.06e-78,5;UBERON:0001130,1.06e-78,5;UBERON:0001066,1.06e-78,5;UBERON:0001468,1.06e-78,5;UBERON:0006444,1.46e-50,2;UBERON:0001995,1.46e-50,2;UBERON:0004715,1.46e-50,2;UBERON:0004905,1.71e-49,8;UBERON:0000982,1.71e-49,8;UBERON:0004770,1.71e-49,8;UBERON:0002418,3.94e-34,3;UBERON:0004755,3.94e-34,3;UBERON:0002242,2.09e-33,3;UBERON:0003068,2.09e-33,3;UBERON:0002328,2.09e-33,3;UBERON:0004880,2.09e-33,3;UBERON:0000075,4.32e-25,16;UBERON:0002114,1.41e-09,2;UBERON:0011137,5.75e-08,14;UBERON:0001052,1.40e-07,4 | |||
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| ||
|short_description=p4@NKX3-2 | |short_description=p4@NKX3-2 | ||
}} | }} |
Latest revision as of 04:48, 25 September 2015
Short description: | p4@NKX3-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NKX3-2_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_NM_001189, uc003gmx.2_5end |
EntrezGene: | NKX3-2 |
HGNC: | 951 |
UniProt: | P78367 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 1.46e-50 | 2 |
nucleus pulposus cell of intervertebral disc | 2.09e-33 | 3 |
fibroblast of lymphatic vessel | 1.21e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.06e-78 | 5 |
symphysis | 1.06e-78 | 5 |
nonsynovial joint | 1.06e-78 | 5 |
fibrous joint | 1.06e-78 | 5 |
cartilaginous joint | 1.06e-78 | 5 |
developing mesenchymal condensation | 1.06e-78 | 5 |
pre-cartilage condensation | 1.06e-78 | 5 |
cartilaginous condensation | 1.06e-78 | 5 |
cartilage element | 1.06e-78 | 5 |
post-cranial axial skeletal system | 1.06e-78 | 5 |
vertebral column | 1.06e-78 | 5 |
intervertebral disk | 1.06e-78 | 5 |
intervertebral joint | 1.06e-78 | 5 |
annulus fibrosus | 1.46e-50 | 2 |
fibrocartilage | 1.46e-50 | 2 |
annulus fibrosus disci intervertebralis | 1.46e-50 | 2 |
articulation | 1.71e-49 | 8 |
skeletal joint | 1.71e-49 | 8 |
articular system | 1.71e-49 | 8 |
cartilage tissue | 3.94e-34 | 3 |
skeletal tissue | 3.94e-34 | 3 |
nucleus pulposus | 2.09e-33 | 3 |
axial mesoderm | 2.09e-33 | 3 |
notochord | 2.09e-33 | 3 |
chordamesoderm | 2.09e-33 | 3 |
subdivision of skeletal system | 4.32e-25 | 16 |
duodenum | 1.41e-09 | 2 |
axial skeletal system | 5.75e-08 | 14 |
rectum | 1.40e-07 | 4 |