FFCP PHASE1:Hg19::chr1:40506344..40506355,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:40506344..40506355,+
|short_description=p3@CAP1
|description=CAGE_peak_3_at_CAP1_5end
|association_with_transcript=-36bp_to_ENST00000414893_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10487 | |EntrezGene=10487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20040 | |HGNC=20040 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T0S3 | |UniProt=Q5T0S3 | ||
|association_with_transcript=-36bp_to_ENST00000414893_5end | |||
|cluster_id=chr1:40506344..40506355,+ | |||
|coexpression_cluster_id=C1580 | |||
|description=CAGE_peak_3_at_CAP1_5end | |||
|id=chr1:40506344..40506355,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.64e-26!76;CL:0002194!4.60e-22!63;CL:0000576!4.60e-22!63;CL:0000040!4.60e-22!63;CL:0000559!4.60e-22!63;CL:0002057!1.33e-21!42;CL:0002009!1.53e-21!65;CL:0000557!3.45e-21!71;CL:0000839!5.23e-20!70;CL:0000860!3.23e-19!45;CL:0002371!3.49e-15!591;CL:0000763!3.43e-14!112;CL:0000049!3.43e-14!112;CL:0000144!1.80e-13!625;CL:0000723!1.85e-13!436;CL:0000048!2.13e-13!430;CL:0000034!6.39e-12!444;CL:0000548!1.14e-08!679;CL:0000004!1.14e-08!679;CL:0000255!1.14e-08!679;CL:0000012!3.12e-08!682;CL:0000134!6.13e-08!358;CL:0000003!1.43e-07!722;CL:0002320!2.04e-07!365;CL:0000359!9.31e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.29e-17;33!CL:0002057;2.29e-17;33!CL:0000576;7.03e-17;48!CL:0000473;2.57e-15;39!CL:0000234;2.57e-15;39!CL:0000766;3.45e-13;69!CL:0000359;4.12e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.10e-29,72;CL:0002194,3.38e-25,59;CL:0000576,3.38e-25,59;CL:0000040,3.38e-25,59;CL:0000559,3.38e-25,59;CL:0002009,1.51e-24,61;CL:0000557,5.44e-24,67;CL:0000473,1.09e-22,48;CL:0000234,1.09e-22,48;CL:0000839,1.79e-22,66;CL:0000860,2.46e-22,42;CL:0002057,2.46e-22,42;CL:0000763,2.70e-15,108;CL:0000049,2.70e-15,108;CL:0000723,8.57e-15,433;CL:0000048,1.03e-14,427;CL:0000034,5.15e-13,441;CL:0000134,3.25e-09,354;CL:0002320,1.05e-08,361;CL:0000219,4.35e-07,386;CL:0000359,6.00e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;1.93e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!8.45e-23!167;UBERON:0003081!1.00e-19!216;UBERON:0002193!1.83e-19!112;UBERON:0002371!1.87e-19!80;UBERON:0004765!3.86e-19!101;UBERON:0001434!3.86e-19!101;UBERON:0002390!5.39e-19!102;UBERON:0003061!5.39e-19!102;UBERON:0001474!1.93e-17!86;UBERON:0000467!3.81e-15!625;UBERON:0000480!7.68e-15!626;UBERON:0000926!2.92e-13!448;UBERON:0004120!2.92e-13!448;UBERON:0006603!2.92e-13!448;UBERON:0000468!1.29e-11!659;UBERON:0002405!2.03e-11!115;UBERON:0004535!5.19e-10!110;UBERON:0000923!9.36e-10!604;UBERON:0005291!9.36e-10!604;UBERON:0006598!9.36e-10!604;UBERON:0002532!9.36e-10!604;UBERON:0001009!1.02e-09!113;UBERON:0002050!1.29e-09!605;UBERON:0005423!1.29e-09!605;UBERON:0000922!2.31e-08!612;UBERON:0000914!2.72e-08!83;UBERON:0002329!2.72e-08!83;UBERON:0003077!2.72e-08!83;UBERON:0003059!2.72e-08!83;UBERON:0007282!2.72e-08!83;UBERON:0009618!2.72e-08!83;UBERON:0007285!2.72e-08!83;UBERON:0001637!3.63e-08!42;UBERON:0003509!3.63e-08!42;UBERON:0004572!3.63e-08!42;UBERON:0000055!1.41e-07!69;UBERON:0001981!1.97e-07!60;UBERON:0007500!1.97e-07!60;UBERON:0004537!1.97e-07!60;UBERON:0006965!1.97e-07!60;UBERON:0004872!2.24e-07!84;UBERON:0002049!3.19e-07!79;UBERON:0007798!3.19e-07!79;UBERON:0002384!7.16e-07!375;UBERON:0000479!7.50e-07!787;UBERON:0000486!9.10e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.03e-25,315;UBERON:0004120,1.03e-25,315;UBERON:0006603,1.03e-25,315;UBERON:0002204,4.61e-24,167;UBERON:0003081,8.77e-24,203;UBERON:0002371,4.25e-22,76;UBERON:0002193,7.00e-22,108;UBERON:0002390,2.78e-21,98;UBERON:0003061,2.78e-21,98;UBERON:0001434,8.62e-21,100;UBERON:0004765,2.32e-20,90;UBERON:0001474,1.07e-19,82;UBERON:0002405,3.12e-19,93;UBERON:0002050,1.05e-11,564;UBERON:0004535,4.20e-11,109;UBERON:0000923,7.25e-11,560;UBERON:0010316,7.25e-11,560;UBERON:0005291,7.25e-11,560;UBERON:0006598,7.25e-11,560;UBERON:0010317,7.25e-11,560;UBERON:0002532,7.25e-11,560;UBERON:0001009,1.18e-10,112;UBERON:0005423,1.51e-10,581;UBERON:0000922,5.50e-09,592;UBERON:0001637,2.08e-08,42;UBERON:0003509,2.08e-08,42;UBERON:0004572,2.08e-08,42;UBERON:0000055,2.43e-08,68;UBERON:0002384,4.09e-08,371;UBERON:0007500,5.05e-08,59;UBERON:0001981,5.05e-08,59;UBERON:0004537,5.05e-08,59;UBERON:0006965,5.05e-08,59;UBERON:0002049,5.39e-08,78;UBERON:0007798,5.39e-08,78;UBERON:0004872,5.91e-08,83;UBERON:0000486,8.66e-07,83 | |||
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| ||
|short_description=p3@CAP1 | |||
}} | }} |
Latest revision as of 00:42, 18 September 2015
Short description: | p3@CAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CAP1_5end |
Coexpression cluster: | C1580_acute_Neutrophils_Mallassezderived_migratory_Smooth_Preadipocyte_small |
Association with transcript: | -36bp_to_ENST00000414893_5end |
EntrezGene: | CAP1 |
HGNC: | 20040 |
UniProt: | Q5T0S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.10e-29 | 72 |
monopoietic cell | 3.38e-25 | 59 |
monocyte | 3.38e-25 | 59 |
monoblast | 3.38e-25 | 59 |
promonocyte | 3.38e-25 | 59 |
macrophage dendritic cell progenitor | 1.51e-24 | 61 |
granulocyte monocyte progenitor cell | 5.44e-24 | 67 |
defensive cell | 1.09e-22 | 48 |
phagocyte | 1.09e-22 | 48 |
myeloid lineage restricted progenitor cell | 1.79e-22 | 66 |
classical monocyte | 2.46e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.46e-22 | 42 |
myeloid cell | 2.70e-15 | 108 |
common myeloid progenitor | 2.70e-15 | 108 |
somatic stem cell | 8.57e-15 | 433 |
multi fate stem cell | 1.03e-14 | 427 |
stem cell | 5.15e-13 | 441 |
mesenchymal cell | 3.25e-09 | 354 |
connective tissue cell | 1.05e-08 | 361 |
motile cell | 4.35e-07 | 386 |
vascular associated smooth muscle cell | 6.00e-07 | 32 |