FFCP PHASE1:Hg19::chr6:30890599..30890626,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57176 | |EntrezGene=57176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21642 | |HGNC=21642 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-254bp_to_uc010jsh.1_5end | |association_with_transcript=-254bp_to_uc010jsh.1_5end | ||
|cluster_id=chr6:30890599..30890626,+ | |||
|coexpression_cluster_id=C1044 | |coexpression_cluster_id=C1044 | ||
|description=CAGE_peak_4_at_VARS2_5end | |description=CAGE_peak_4_at_VARS2_5end | ||
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|ontology_enrichment_celltype=CL:1000507!1.36e-33!12;CL:1000494!1.36e-33!12;CL:1000449!1.14e-24!16;CL:1000497!1.07e-21!18;CL:0002518!1.07e-21!18;CL:0002681!3.55e-15!13;CL:0002584!3.55e-15!13;CL:0000066!2.54e-14!254;CL:0000239!5.66e-14!3;CL:1000615!5.66e-14!3;CL:0002306!5.66e-14!3;CL:0002327!3.32e-10!4;CL:0002536!1.89e-09!2 | |ontology_enrichment_celltype=CL:1000507!1.36e-33!12;CL:1000494!1.36e-33!12;CL:1000449!1.14e-24!16;CL:1000497!1.07e-21!18;CL:0002518!1.07e-21!18;CL:0002681!3.55e-15!13;CL:0002584!3.55e-15!13;CL:0000066!2.54e-14!254;CL:0000239!5.66e-14!3;CL:1000615!5.66e-14!3;CL:0002306!5.66e-14!3;CL:0002327!3.32e-10!4;CL:0002536!1.89e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:1000507;5.09e-45;10!CL:1000494;5.09e-45;10!CL:1000449;8.14e-30;15!CL:0000239;5.59e-29;3!CL:1000615;5.59e-29;3!CL:0002306;5.59e-29;3!CL:1000497;3.11e-26;17!CL:0002518;3.11e-26;17!CL:0002327;4.31e-21;4!CL:0002681;1.80e-19;12!CL:0002584;1.80e-19;12!CL:0002536;5.19e-19;2!CL:0000349;1.67e-16;19!CL:0002541;1.13e-12;3!CL:0002537;3.72e-08;5 | |ontology_enrichment_celltype_v019=CL:1000507;5.09e-45;10!CL:1000494;5.09e-45;10!CL:1000449;8.14e-30;15!CL:0000239;5.59e-29;3!CL:1000615;5.59e-29;3!CL:0002306;5.59e-29;3!CL:1000497;3.11e-26;17!CL:0002518;3.11e-26;17!CL:0002327;4.31e-21;4!CL:0002681;1.80e-19;12!CL:0002584;1.80e-19;12!CL:0002536;5.19e-19;2!CL:0000349;1.67e-16;19!CL:0002541;1.13e-12;3!CL:0002537;3.72e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,5.10e-45,10;CL:1000494,5.10e-45,10;CL:1000449,8.14e-30,15;CL:0000239,5.09e-29,3;CL:1000615,5.09e-29,3;CL:0002306,5.09e-29,3;CL:1000497,3.11e-26,17;CL:0002518,3.11e-26,17;CL:0002327,4.31e-21,4;CL:0002681,1.87e-19,12;CL:0002584,1.87e-19,12;CL:0002536,5.44e-19,2;CL:0000349,1.67e-16,19;CL:0002541,1.06e-12,3;CL:0000066,8.76e-09,253;CL:0002537,3.78e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.58e-08;10!UBERON:0005564;1.58e-08;10 | |ontology_enrichment_development_v019=UBERON:0009117;1.58e-08;10!UBERON:0005564;1.58e-08;10 | ||
|ontology_enrichment_disease=DOID:4468!1.31e-08!2 | |ontology_enrichment_disease=DOID:4468!1.31e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3111;3.96e-10;1!DOID:3603;3.96e-10;1 | |ontology_enrichment_disease_v019=DOID:3111;3.96e-10;1!DOID:3603;3.96e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,4.75e-10,1;DOID:3603,4.75e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0009773!1.36e-33!12;UBERON:0001231!1.36e-33!12;UBERON:0004810!1.36e-33!12;UBERON:0004211!1.14e-24!16;UBERON:0001285!1.14e-24!16;UBERON:0007684!1.14e-24!16;UBERON:0003220!1.14e-24!16;UBERON:0004208!1.14e-24!16;UBERON:0006555!4.27e-23!17;UBERON:0005103!4.27e-23!17;UBERON:0000083!4.27e-23!17;UBERON:0009201!4.27e-23!17;UBERON:0004819!4.27e-23!17;UBERON:0006553!4.27e-23!17;UBERON:0003074!4.27e-23!17;UBERON:0003060!4.27e-23!17;UBERON:0000080!1.07e-21!18;UBERON:0002120!1.07e-21!18;UBERON:0004875!1.07e-21!18;UBERON:0005721!1.07e-21!18;UBERON:0005754!1.07e-21!18;UBERON:0007297!1.07e-21!18;UBERON:0000058!1.02e-20!26;UBERON:0002113!1.55e-19!27;UBERON:0003918!1.55e-19!27;UBERON:0005095!1.55e-19!27;UBERON:0007687!1.55e-19!27;UBERON:0004876!2.57e-19!20;UBERON:0003887!2.69e-18!21;UBERON:0006554!1.37e-17!44;UBERON:0005631!1.61e-17!14;UBERON:0000158!1.61e-17!14;UBERON:0001008!4.04e-17!45;UBERON:0003064!2.82e-16!37;UBERON:0000489!4.59e-16!32;UBERON:0001225!3.55e-15!13;UBERON:0008987!3.55e-15!13;UBERON:0006853!5.66e-14!3;UBERON:0007685!5.66e-14!3;UBERON:0004134!5.66e-14!3;UBERON:0001851!3.94e-12!16;UBERON:0000353!2.35e-11!17;UBERON:0003886!3.06e-11!63;UBERON:0003103!3.08e-11!69;UBERON:0000464!1.01e-10!104;UBERON:0001911!3.32e-10!4;UBERON:0005333!3.32e-10!4;UBERON:0008425!3.32e-10!4;UBERON:0005311!3.32e-10!4;UBERON:0000466!3.48e-10!126;UBERON:0000305!7.74e-10!7;UBERON:0002553!8.90e-10!70;UBERON:0005172!1.03e-09!55;UBERON:0005173!1.03e-09!55;UBERON:0000478!1.17e-09!24;UBERON:0003124!2.53e-09!7;UBERON:0004871!1.31e-08!8;UBERON:0002417!1.75e-08!61;UBERON:0000916!1.75e-08!61;UBERON:0005177!6.42e-08!107;UBERON:0009569!2.72e-07!113 | |ontology_enrichment_uberon=UBERON:0009773!1.36e-33!12;UBERON:0001231!1.36e-33!12;UBERON:0004810!1.36e-33!12;UBERON:0004211!1.14e-24!16;UBERON:0001285!1.14e-24!16;UBERON:0007684!1.14e-24!16;UBERON:0003220!1.14e-24!16;UBERON:0004208!1.14e-24!16;UBERON:0006555!4.27e-23!17;UBERON:0005103!4.27e-23!17;UBERON:0000083!4.27e-23!17;UBERON:0009201!4.27e-23!17;UBERON:0004819!4.27e-23!17;UBERON:0006553!4.27e-23!17;UBERON:0003074!4.27e-23!17;UBERON:0003060!4.27e-23!17;UBERON:0000080!1.07e-21!18;UBERON:0002120!1.07e-21!18;UBERON:0004875!1.07e-21!18;UBERON:0005721!1.07e-21!18;UBERON:0005754!1.07e-21!18;UBERON:0007297!1.07e-21!18;UBERON:0000058!1.02e-20!26;UBERON:0002113!1.55e-19!27;UBERON:0003918!1.55e-19!27;UBERON:0005095!1.55e-19!27;UBERON:0007687!1.55e-19!27;UBERON:0004876!2.57e-19!20;UBERON:0003887!2.69e-18!21;UBERON:0006554!1.37e-17!44;UBERON:0005631!1.61e-17!14;UBERON:0000158!1.61e-17!14;UBERON:0001008!4.04e-17!45;UBERON:0003064!2.82e-16!37;UBERON:0000489!4.59e-16!32;UBERON:0001225!3.55e-15!13;UBERON:0008987!3.55e-15!13;UBERON:0006853!5.66e-14!3;UBERON:0007685!5.66e-14!3;UBERON:0004134!5.66e-14!3;UBERON:0001851!3.94e-12!16;UBERON:0000353!2.35e-11!17;UBERON:0003886!3.06e-11!63;UBERON:0003103!3.08e-11!69;UBERON:0000464!1.01e-10!104;UBERON:0001911!3.32e-10!4;UBERON:0005333!3.32e-10!4;UBERON:0008425!3.32e-10!4;UBERON:0005311!3.32e-10!4;UBERON:0000466!3.48e-10!126;UBERON:0000305!7.74e-10!7;UBERON:0002553!8.90e-10!70;UBERON:0005172!1.03e-09!55;UBERON:0005173!1.03e-09!55;UBERON:0000478!1.17e-09!24;UBERON:0003124!2.53e-09!7;UBERON:0004871!1.31e-08!8;UBERON:0002417!1.75e-08!61;UBERON:0000916!1.75e-08!61;UBERON:0005177!6.42e-08!107;UBERON:0009569!2.72e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.09e-45;10!UBERON:0009773;5.09e-45;10!UBERON:0001231;5.09e-45;10!UBERON:0004810;5.09e-45;10!UBERON:0005631;1.20e-31;10!UBERON:0000158;1.20e-31;10!UBERON:0006555;8.14e-30;15!UBERON:0004819;8.14e-30;15!UBERON:0001285;8.14e-30;15!UBERON:0007684;8.14e-30;15!UBERON:0006853;5.59e-29;3!UBERON:0007685;5.59e-29;3!UBERON:0004134;5.59e-29;3!UBERON:0001911;4.31e-21;4!UBERON:0000305;7.80e-21;7!UBERON:0001225;1.80e-19;12!UBERON:0008987;1.80e-19;12!UBERON:0002113;2.19e-18;24!UBERON:0011143;2.19e-18;24!UBERON:0001851;1.47e-15;15!UBERON:0000353;1.47e-15;15!UBERON:0000489;4.30e-15;29!UBERON:0006554;1.45e-14;30!UBERON:0001008;1.45e-14;30!UBERON:0000478;5.52e-13;24!UBERON:0003124;1.13e-12;3!UBERON:0000920;1.13e-12;3!UBERON:0005172;8.78e-07;52!UBERON:0005173;8.78e-07;52 | |ontology_enrichment_uberon_v019=UBERON:0004211;5.09e-45;10!UBERON:0009773;5.09e-45;10!UBERON:0001231;5.09e-45;10!UBERON:0004810;5.09e-45;10!UBERON:0005631;1.20e-31;10!UBERON:0000158;1.20e-31;10!UBERON:0006555;8.14e-30;15!UBERON:0004819;8.14e-30;15!UBERON:0001285;8.14e-30;15!UBERON:0007684;8.14e-30;15!UBERON:0006853;5.59e-29;3!UBERON:0007685;5.59e-29;3!UBERON:0004134;5.59e-29;3!UBERON:0001911;4.31e-21;4!UBERON:0000305;7.80e-21;7!UBERON:0001225;1.80e-19;12!UBERON:0008987;1.80e-19;12!UBERON:0002113;2.19e-18;24!UBERON:0011143;2.19e-18;24!UBERON:0001851;1.47e-15;15!UBERON:0000353;1.47e-15;15!UBERON:0000489;4.30e-15;29!UBERON:0006554;1.45e-14;30!UBERON:0001008;1.45e-14;30!UBERON:0000478;5.52e-13;24!UBERON:0003124;1.13e-12;3!UBERON:0000920;1.13e-12;3!UBERON:0005172;8.78e-07;52!UBERON:0005173;8.78e-07;52 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.10e-45,10;UBERON:0004211,8.14e-30,15;UBERON:0009773,8.14e-30,15;UBERON:0001231,8.14e-30,15;UBERON:0001285,8.14e-30,15;UBERON:0007684,8.14e-30,15;UBERON:0004208,8.14e-30,15;UBERON:0006853,5.09e-29,3;UBERON:0007685,5.09e-29,3;UBERON:0004134,5.09e-29,3;UBERON:0006555,6.51e-28,16;UBERON:0004819,6.51e-28,16;UBERON:0005631,1.60e-22,14;UBERON:0000158,1.60e-22,14;UBERON:0001911,4.31e-21,4;UBERON:0005333,4.31e-21,4;UBERON:0008425,4.31e-21,4;UBERON:0005311,4.31e-21,4;UBERON:0000305,8.22e-21,7;UBERON:0001225,1.87e-19,12;UBERON:0008987,1.87e-19,12;UBERON:0004871,3.01e-18,8;UBERON:0002113,6.45e-17,26;UBERON:0003918,6.45e-17,26;UBERON:0011143,6.45e-17,26;UBERON:0005095,6.45e-17,26;UBERON:0007687,6.45e-17,26;UBERON:0001851,1.52e-15,15;UBERON:0000353,1.52e-15,15;UBERON:0000489,4.52e-14,31;UBERON:0000478,5.52e-13,24;UBERON:0000920,1.06e-12,3;UBERON:0006554,1.05e-11,47;UBERON:0001008,1.93e-11,48;UBERON:0000076,7.69e-11,8;UBERON:0005172,9.38e-08,54;UBERON:0005173,9.38e-08,54;UBERON:0003103,1.02e-07,68;UBERON:0002417,6.69e-07,60;UBERON:0000916,6.69e-07,60 | |||
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|short_description=p4@VARS2 | |short_description=p4@VARS2 | ||
}} | }} |
Latest revision as of 19:28, 17 September 2015
Short description: | p4@VARS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VARS2_5end |
Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
Association with transcript: | -254bp_to_uc010jsh.1_5end |
EntrezGene: | VARS2 |
HGNC: | 21642 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 5.10e-45 | 10 |
nephron tubule epithelial cell | 5.10e-45 | 10 |
epithelial cell of nephron | 8.14e-30 | 15 |
brush border epithelial cell | 5.09e-29 | 3 |
kidney cortex tubule cell | 5.09e-29 | 3 |
epithelial cell of proximal tubule | 5.09e-29 | 3 |
kidney cell | 3.11e-26 | 17 |
kidney epithelial cell | 3.11e-26 | 17 |
mammary gland epithelial cell | 4.31e-21 | 4 |
kidney cortical cell | 1.87e-19 | 12 |
renal cortical epithelial cell | 1.87e-19 | 12 |
amniotic epithelial cell | 5.44e-19 | 2 |
extraembryonic cell | 1.67e-16 | 19 |
chorionic membrane mesenchymal stem cell | 1.06e-12 | 3 |
epithelial cell | 8.76e-09 | 253 |
amnion mesenchymal stem cell | 3.78e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 4.75e-10 | 1 |
mucinous cystadenocarcinoma | 4.75e-10 | 1 |