FFCP PHASE1:Hg19::chr2:58273760..58273846,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7444 | |EntrezGene=7444 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12719 | |HGNC=12719 | ||
|TSSclassifier=strong | |||
|UniProt=Q86Y07,E9PFA9,E9PBU1 | |UniProt=Q86Y07,E9PFA9,E9PBU1 | ||
|association_with_transcript=0bp_to_ENST00000340157,ENST00000394539,ENST00000432057,NM_001130480,NM_001130481,NM_001130482,NM_001130483,NM_006296,NR_036441_5end | |association_with_transcript=0bp_to_ENST00000340157,ENST00000394539,ENST00000432057,NM_001130480,NM_001130481,NM_001130482,NM_001130483,NM_006296,NR_036441_5end | ||
|cluster_id=chr2:58273760..58273846,+ | |||
|coexpression_cluster_id=C65 | |coexpression_cluster_id=C65 | ||
|description=CAGE_peak_2_at_VRK2_5end | |description=CAGE_peak_2_at_VRK2_5end | ||
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|ontology_enrichment_celltype=CL:0000763!1.78e-33!112;CL:0000049!1.78e-33!112;CL:0000839!2.75e-30!70;CL:0000557!1.72e-29!71;CL:0002194!1.99e-27!63;CL:0000576!1.99e-27!63;CL:0000040!1.99e-27!63;CL:0000559!1.99e-27!63;CL:0002009!2.78e-27!65;CL:0002057!3.36e-27!42;CL:0000766!4.48e-27!76;CL:0000860!8.33e-25!45;CL:0000048!2.17e-13!430;CL:0000134!4.67e-13!358;CL:0000723!6.22e-13!436;CL:0000034!8.14e-13!444;CL:0002320!5.21e-12!365;CL:0002032!1.12e-11!165;CL:0000837!1.12e-11!165;CL:0000037!1.14e-11!172;CL:0000566!1.14e-11!172;CL:0000988!5.12e-11!182;CL:0000219!6.67e-09!390;CL:0002031!1.90e-07!124;CL:0002371!7.41e-07!591 | |ontology_enrichment_celltype=CL:0000763!1.78e-33!112;CL:0000049!1.78e-33!112;CL:0000839!2.75e-30!70;CL:0000557!1.72e-29!71;CL:0002194!1.99e-27!63;CL:0000576!1.99e-27!63;CL:0000040!1.99e-27!63;CL:0000559!1.99e-27!63;CL:0002009!2.78e-27!65;CL:0002057!3.36e-27!42;CL:0000766!4.48e-27!76;CL:0000860!8.33e-25!45;CL:0000048!2.17e-13!430;CL:0000134!4.67e-13!358;CL:0000723!6.22e-13!436;CL:0000034!8.14e-13!444;CL:0002320!5.21e-12!365;CL:0002032!1.12e-11!165;CL:0000837!1.12e-11!165;CL:0000037!1.14e-11!172;CL:0000566!1.14e-11!172;CL:0000988!5.12e-11!182;CL:0000219!6.67e-09!390;CL:0002031!1.90e-07!124;CL:0002371!7.41e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.28e-20;33!CL:0002057;1.28e-20;33!CL:0000473;1.12e-18;39!CL:0000234;1.12e-18;39!CL:0000576;4.67e-18;48!CL:0000766;1.62e-13;69!CL:0000763;1.08e-10;100 | |ontology_enrichment_celltype_v019=CL:0000860;1.28e-20;33!CL:0002057;1.28e-20;33!CL:0000473;1.12e-18;39!CL:0000234;1.12e-18;39!CL:0000576;4.67e-18;48!CL:0000766;1.62e-13;69!CL:0000763;1.08e-10;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.60e-34,108;CL:0000049,1.60e-34,108;CL:0000839,6.70e-32,66;CL:0000557,4.90e-31,67;CL:0002194,4.60e-29,59;CL:0000576,4.60e-29,59;CL:0000040,4.60e-29,59;CL:0000559,4.60e-29,59;CL:0002009,7.46e-29,61;CL:0000473,7.65e-29,48;CL:0000234,7.65e-29,48;CL:0000766,2.20e-28,72;CL:0000860,3.36e-27,42;CL:0002057,3.36e-27,42;CL:0000048,2.25e-13,427;CL:0000134,2.64e-13,354;CL:0000723,6.48e-13,433;CL:0000034,8.54e-13,441;CL:0002320,3.08e-12,361;CL:0002032,6.95e-12,161;CL:0000837,6.95e-12,161;CL:0000037,7.20e-12,168;CL:0000988,3.53e-11,177;CL:0000219,4.22e-09,386;CL:0002031,1.26e-07,120;CL:0000738,7.67e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;8.48e-20;42!CL:0000049;2.75e-10;108 | |ontology_enrichment_development_v019=CL:0002057;8.48e-20;42!CL:0000049;2.75e-10;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.93e-27!80;UBERON:0004765!2.24e-26!101;UBERON:0001434!2.24e-26!101;UBERON:0001474!1.55e-25!86;UBERON:0002204!5.39e-22!167;UBERON:0002390!1.39e-20!102;UBERON:0003061!1.39e-20!102;UBERON:0002193!8.27e-20!112;UBERON:0002405!6.85e-14!115;UBERON:0002384!1.22e-12!375;UBERON:0003081!4.46e-12!216;UBERON:0000926!2.35e-10!448;UBERON:0004120!2.35e-10!448;UBERON:0006603!2.35e-10!448 | |ontology_enrichment_uberon=UBERON:0002371!4.93e-27!80;UBERON:0004765!2.24e-26!101;UBERON:0001434!2.24e-26!101;UBERON:0001474!1.55e-25!86;UBERON:0002204!5.39e-22!167;UBERON:0002390!1.39e-20!102;UBERON:0003061!1.39e-20!102;UBERON:0002193!8.27e-20!112;UBERON:0002405!6.85e-14!115;UBERON:0002384!1.22e-12!375;UBERON:0003081!4.46e-12!216;UBERON:0000926!2.35e-10!448;UBERON:0004120!2.35e-10!448;UBERON:0006603!2.35e-10!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.88e-28,76;UBERON:0001474,1.31e-26,82;UBERON:0001434,4.83e-26,100;UBERON:0004765,2.55e-25,90;UBERON:0002405,2.28e-23,93;UBERON:0002390,2.76e-21,98;UBERON:0003061,2.76e-21,98;UBERON:0002204,3.18e-21,167;UBERON:0002193,2.05e-20,108;UBERON:0003081,1.54e-15,203;UBERON:0000926,1.10e-14,315;UBERON:0004120,1.10e-14,315;UBERON:0006603,1.10e-14,315;UBERON:0002384,7.20e-13,371 | |||
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| ||
|short_description=p2@VRK2 | |short_description=p2@VRK2 | ||
}} | }} |
Latest revision as of 19:05, 17 September 2015
Short description: | p2@VRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VRK2_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | 0bp_to_ENST00000340157, ENST00000394539, ENST00000432057, NM_001130480, NM_001130481, NM_001130482, NM_001130483, NM_006296, NR_036441_5end |
EntrezGene: | VRK2 |
HGNC: | 12719 |
UniProt: | Q86Y07E9PFA9E9PBU1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.60e-34 | 108 |
common myeloid progenitor | 1.60e-34 | 108 |
myeloid lineage restricted progenitor cell | 6.70e-32 | 66 |
granulocyte monocyte progenitor cell | 4.90e-31 | 67 |
monopoietic cell | 4.60e-29 | 59 |
monocyte | 4.60e-29 | 59 |
monoblast | 4.60e-29 | 59 |
promonocyte | 4.60e-29 | 59 |
macrophage dendritic cell progenitor | 7.46e-29 | 61 |
defensive cell | 7.65e-29 | 48 |
phagocyte | 7.65e-29 | 48 |
myeloid leukocyte | 2.20e-28 | 72 |
classical monocyte | 3.36e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.36e-27 | 42 |
multi fate stem cell | 2.25e-13 | 427 |
mesenchymal cell | 2.64e-13 | 354 |
somatic stem cell | 6.48e-13 | 433 |
stem cell | 8.54e-13 | 441 |
connective tissue cell | 3.08e-12 | 361 |
hematopoietic oligopotent progenitor cell | 6.95e-12 | 161 |
hematopoietic multipotent progenitor cell | 6.95e-12 | 161 |
hematopoietic stem cell | 7.20e-12 | 168 |
hematopoietic cell | 3.53e-11 | 177 |
motile cell | 4.22e-09 | 386 |
hematopoietic lineage restricted progenitor cell | 1.26e-07 | 120 |
leukocyte | 7.67e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.88e-28 | 76 |
bone element | 1.31e-26 | 82 |
skeletal system | 4.83e-26 | 100 |
skeletal element | 2.55e-25 | 90 |
immune system | 2.28e-23 | 93 |
hematopoietic system | 2.76e-21 | 98 |
blood island | 2.76e-21 | 98 |
musculoskeletal system | 3.18e-21 | 167 |
hemolymphoid system | 2.05e-20 | 108 |
lateral plate mesoderm | 1.54e-15 | 203 |
mesoderm | 1.10e-14 | 315 |
mesoderm-derived structure | 1.10e-14 | 315 |
presumptive mesoderm | 1.10e-14 | 315 |
connective tissue | 7.20e-13 | 371 |