FFCP PHASE1:Hg19::chr3:52719663..52719716,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26354 | |EntrezGene=26354 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29931 | |HGNC=29931 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BVP2 | |UniProt=Q9BVP2 | ||
|association_with_transcript=-219bp_to_ENST00000418458,NM_014366,NM_206825,NM_206826,uc003dfd.2,uc003dfe.2,uc003dff.2,uc011beh.1_5end | |association_with_transcript=-219bp_to_ENST00000418458,NM_014366,NM_206825,NM_206826,uc003dfd.2,uc003dfe.2,uc003dff.2,uc011beh.1_5end | ||
|cluster_id=chr3:52719663..52719716,+ | |||
|description=CAGE_peak_2_at_GNL3_5end | |description=CAGE_peak_2_at_GNL3_5end | ||
|id=chr3:52719663..52719716,+ | |id=chr3:52719663..52719716,+ | ||
|ontology_enrichment_celltype=CL:0002009!1.55e-21!65;CL:0002194!1.52e-20!63;CL:0000576!1.52e-20!63;CL:0000040!1.52e-20!63;CL:0000559!1.52e-20!63;CL:0000860!2.29e-20!45;CL:0002057!7.17e-19!42;CL:0000557!4.54e-17!71;CL:0000839!3.28e-15!70;CL:0000766!5.09e-14!76;CL:0000763!2.66e-12!112;CL:0000049!2.66e-12!112;CL:0000219!9.80e-09!390;CL:0000134!2.04e-07!358;CL:0002320!2.33e-07!365 | |ontology_enrichment_celltype=CL:0002009!1.55e-21!65;CL:0002194!1.52e-20!63;CL:0000576!1.52e-20!63;CL:0000040!1.52e-20!63;CL:0000559!1.52e-20!63;CL:0000860!2.29e-20!45;CL:0002057!7.17e-19!42;CL:0000557!4.54e-17!71;CL:0000839!3.28e-15!70;CL:0000766!5.09e-14!76;CL:0000763!2.66e-12!112;CL:0000049!2.66e-12!112;CL:0000219!9.80e-09!390;CL:0000134!2.04e-07!358;CL:0002320!2.33e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.94e-19;33!CL:0002057;1.94e-19;33!CL:0000473;1.35e-16;39!CL:0000234;1.35e-16;39!CL:0000576;4.75e-12;48!CL:0000766;7.20e-07;69 | |ontology_enrichment_celltype_v019=CL:0000860;1.94e-19;33!CL:0002057;1.94e-19;33!CL:0000473;1.35e-16;39!CL:0000234;1.35e-16;39!CL:0000576;4.75e-12;48!CL:0000766;7.20e-07;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.43e-20,61;CL:0000473,1.08e-19,48;CL:0000234,1.08e-19,48;CL:0002194,1.40e-19,59;CL:0000576,1.40e-19,59;CL:0000040,1.40e-19,59;CL:0000559,1.40e-19,59;CL:0000860,6.14e-19,42;CL:0002057,6.14e-19,42;CL:0000557,6.22e-16,67;CL:0000839,5.16e-14,66;CL:0000766,4.42e-13,72;CL:0000763,2.32e-11,108;CL:0000049,2.32e-11,108;CL:0000219,1.79e-08,386;CL:0000134,3.76e-07,354;CL:0002320,4.53e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.65e-14;42 | |ontology_enrichment_development_v019=CL:0002057;3.65e-14;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!1.19e-15!86;UBERON:0002371!1.38e-15!80;UBERON:0004765!8.65e-14!101;UBERON:0001434!8.65e-14!101;UBERON:0002405!2.90e-12!115;UBERON:0002193!2.02e-10!112;UBERON:0002390!4.67e-10!102;UBERON:0003061!4.67e-10!102;UBERON:0002384!1.18e-07!375;UBERON:0002204!6.37e-07!167 | |ontology_enrichment_uberon=UBERON:0001474!1.19e-15!86;UBERON:0002371!1.38e-15!80;UBERON:0004765!8.65e-14!101;UBERON:0001434!8.65e-14!101;UBERON:0002405!2.90e-12!115;UBERON:0002193!2.02e-10!112;UBERON:0002390!4.67e-10!102;UBERON:0003061!4.67e-10!102;UBERON:0002384!1.18e-07!375;UBERON:0002204!6.37e-07!167 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.72e-14,82;UBERON:0002371,2.05e-14,76;UBERON:0004765,1.38e-13,90;UBERON:0001434,3.23e-12,100;UBERON:0002405,1.96e-11,93;UBERON:0002193,1.62e-09,108;UBERON:0002390,3.81e-09,98;UBERON:0003061,3.81e-09,98;UBERON:0002384,2.17e-07,371 | |||
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| ||
|short_description=p2@GNL3 | |short_description=p2@GNL3 | ||
}} | }} |
Latest revision as of 00:36, 19 September 2015
Short description: | p2@GNL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GNL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -219bp_to_ENST00000418458, NM_014366, NM_206825, NM_206826, uc003dfd.2, uc003dfe.2, uc003dff.2, uc011beh.1_5end |
EntrezGene: | GNL3 |
HGNC: | 29931 |
UniProt: | Q9BVP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.43e-20 | 61 |
defensive cell | 1.08e-19 | 48 |
phagocyte | 1.08e-19 | 48 |
monopoietic cell | 1.40e-19 | 59 |
monocyte | 1.40e-19 | 59 |
monoblast | 1.40e-19 | 59 |
promonocyte | 1.40e-19 | 59 |
classical monocyte | 6.14e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.14e-19 | 42 |
granulocyte monocyte progenitor cell | 6.22e-16 | 67 |
myeloid lineage restricted progenitor cell | 5.16e-14 | 66 |
myeloid leukocyte | 4.42e-13 | 72 |
myeloid cell | 2.32e-11 | 108 |
common myeloid progenitor | 2.32e-11 | 108 |
motile cell | 1.79e-08 | 386 |
mesenchymal cell | 3.76e-07 | 354 |
connective tissue cell | 4.53e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.72e-14 | 82 |
bone marrow | 2.05e-14 | 76 |
skeletal element | 1.38e-13 | 90 |
skeletal system | 3.23e-12 | 100 |
immune system | 1.96e-11 | 93 |
hemolymphoid system | 1.62e-09 | 108 |
hematopoietic system | 3.81e-09 | 98 |
blood island | 3.81e-09 | 98 |
connective tissue | 2.17e-07 | 371 |