FFCP PHASE1:Hg19::chr20:47538238..47538278,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:47538238..47538278,+
|short_description=p1@ARFGEF2
|description=CAGE_peak_1_at_ARFGEF2_5end
|association_with_transcript=0bp_to_ENST00000538445,NM_006420,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10564 | |EntrezGene=10564 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15853 | |HGNC=15853 | ||
|TSSclassifier=strong | |||
|UniProt=F5H3H3,Q59FR3,Q86TH5,Q9Y6D5 | |UniProt=F5H3H3,Q59FR3,Q86TH5,Q9Y6D5 | ||
|association_with_transcript=0bp_to_ENST00000538445,NM_006420,uc002xtx.3_5end | |||
|cluster_id=chr20:47538238..47538278,+ | |||
|coexpression_cluster_id=C262 | |||
|description=CAGE_peak_1_at_ARFGEF2_5end | |||
|id=chr20:47538238..47538278,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.13e-14!71;CL:0000839!2.69e-12!70;CL:0002009!8.56e-12!65;CL:0000738!8.61e-12!140;CL:0002031!1.44e-11!124;CL:0002194!3.98e-11!63;CL:0000576!3.98e-11!63;CL:0000040!3.98e-11!63;CL:0000559!3.98e-11!63;CL:0002087!2.13e-10!119;CL:0000766!2.93e-10!76;CL:0000037!2.27e-08!172;CL:0000566!2.27e-08!172;CL:0000860!1.63e-07!45;CL:0002057!1.72e-07!42;CL:0002032!3.63e-07!165;CL:0000837!3.63e-07!165;CL:0000763!7.16e-07!112;CL:0000049!7.16e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.03e-07;39!CL:0000234;1.03e-07;39!CL:0000860;6.44e-07;33!CL:0002057;6.44e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.95e-14,67;CL:0000839,3.69e-12,66;CL:0002009,1.14e-11,61;CL:0000738,1.58e-11,136;CL:0002031,2.58e-11,120;CL:0002194,5.38e-11,59;CL:0000576,5.38e-11,59;CL:0000040,5.38e-11,59;CL:0000559,5.38e-11,59;CL:0002087,3.78e-10,115;CL:0000766,4.56e-10,72;CL:0000473,2.54e-09,48;CL:0000234,2.54e-09,48;CL:0000037,4.11e-08,168;CL:0000860,1.72e-07,42;CL:0002057,1.72e-07,42;CL:0002032,6.38e-07,161;CL:0000837,6.38e-07,161 | |||
|ontology_enrichment_development_v019=UBERON:0003104;8.46e-07;31 | |||
|ontology_enrichment_disease=DOID:0050687!3.15e-12!143;DOID:305!1.67e-10!106;DOID:162!5.98e-08!235;DOID:14566!1.01e-07!239;DOID:7!1.78e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.15e-12,143;DOID:305,1.67e-10,106;DOID:162,5.98e-08,235;DOID:14566,1.01e-07,239;DOID:7,1.78e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.12e-18!115;UBERON:0001474!2.36e-11!86;UBERON:0002405!3.32e-11!115;UBERON:0002371!7.98e-11!80;UBERON:0002390!2.93e-09!102;UBERON:0003061!2.93e-09!102;UBERON:0004765!3.14e-08!101;UBERON:0001434!3.14e-08!101;UBERON:0002193!3.16e-08!112;UBERON:0000062!1.63e-07!511;UBERON:0000949!1.70e-07!45;UBERON:0005409!8.05e-07!35 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.32e-18,114;UBERON:0001474,3.75e-11,82;UBERON:0002371,1.25e-10,76;UBERON:0002405,7.03e-10,93;UBERON:0002390,5.07e-09,98;UBERON:0003061,5.07e-09,98;UBERON:0004765,3.94e-08,90;UBERON:0002193,5.54e-08,108;UBERON:0000949,1.70e-07,45;UBERON:0001434,3.99e-07,100 | |||
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35074069 | ||
|short_description=p1@ARFGEF2 | |||
}} | }} |
Latest revision as of 18:10, 16 September 2015
Short description: | p1@ARFGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARFGEF2_5end |
Coexpression cluster: | C262_breast_MCF7_skeletal_Reticulocytes_mucinous_hepatoblastoma_Wilms |
Association with transcript: | 0bp_to_ENST00000538445, NM_006420, uc002xtx.3_5end |
EntrezGene: | ARFGEF2 |
HGNC: | 15853 |
UniProt: | F5H3H3Q59FR3Q86TH5Q9Y6D5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.95e-14 | 67 |
myeloid lineage restricted progenitor cell | 3.69e-12 | 66 |
macrophage dendritic cell progenitor | 1.14e-11 | 61 |
leukocyte | 1.58e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 2.58e-11 | 120 |
monopoietic cell | 5.38e-11 | 59 |
monocyte | 5.38e-11 | 59 |
monoblast | 5.38e-11 | 59 |
promonocyte | 5.38e-11 | 59 |
nongranular leukocyte | 3.78e-10 | 115 |
myeloid leukocyte | 4.56e-10 | 72 |
defensive cell | 2.54e-09 | 48 |
phagocyte | 2.54e-09 | 48 |
hematopoietic stem cell | 4.11e-08 | 168 |
classical monocyte | 1.72e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.72e-07 | 42 |
hematopoietic oligopotent progenitor cell | 6.38e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.38e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.32e-18 | 114 |
bone element | 3.75e-11 | 82 |
bone marrow | 1.25e-10 | 76 |
immune system | 7.03e-10 | 93 |
hematopoietic system | 5.07e-09 | 98 |
blood island | 5.07e-09 | 98 |
skeletal element | 3.94e-08 | 90 |
hemolymphoid system | 5.54e-08 | 108 |
endocrine system | 1.70e-07 | 45 |
skeletal system | 3.99e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.15e-12 | 143 |
carcinoma | 1.67e-10 | 106 |
cancer | 5.98e-08 | 235 |
disease of cellular proliferation | 1.01e-07 | 239 |
disease of anatomical entity | 1.78e-07 | 39 |