FFCP PHASE1:Hg19::chr16:2806545..2806568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23524 | |EntrezGene=23524 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=16639 | |HGNC=16639 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=40bp_to_BX647088_5end | |association_with_transcript=40bp_to_BX647088_5end | ||
|cluster_id=chr16:2806545..2806568,+ | |||
|description=CAGE_peak_14_at_SRRM2_5end | |description=CAGE_peak_14_at_SRRM2_5end | ||
|id=chr16:2806545..2806568,+ | |id=chr16:2806545..2806568,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.02e-09!42;CL:0000860!1.36e-08!45;CL:0000037!3.23e-07!172;CL:0000566!3.23e-07!172;CL:0000738!3.92e-07!140;CL:0002032!7.04e-07!165;CL:0000837!7.04e-07!165 | |ontology_enrichment_celltype=CL:0002057!2.02e-09!42;CL:0000860!1.36e-08!45;CL:0000037!3.23e-07!172;CL:0000566!3.23e-07!172;CL:0000738!3.92e-07!140;CL:0002032!7.04e-07!165;CL:0000837!7.04e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.86e-11;33!CL:0002057;3.86e-11;33!CL:0000473;2.04e-08;39!CL:0000234;2.04e-08;39 | |ontology_enrichment_celltype_v019=CL:0000860;3.86e-11;33!CL:0002057;3.86e-11;33!CL:0000473;2.04e-08;39!CL:0000234;2.04e-08;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.10e-11,42;CL:0002057,1.10e-11,42;CL:0000473,4.80e-10,48;CL:0000234,4.80e-10,48;CL:0000766,1.13e-07,72;CL:0000738,2.82e-07,136;CL:0000037,3.44e-07,168;CL:0002194,4.26e-07,59;CL:0000576,4.26e-07,59;CL:0000040,4.26e-07,59;CL:0000559,4.26e-07,59;CL:0000763,8.33e-07,108;CL:0000049,8.33e-07,108;CL:0000557,9.63e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.08e-08;42 | |ontology_enrichment_development_v019=CL:0002057;2.08e-08;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.38e-08!115;UBERON:0002780!2.48e-07!41;UBERON:0001890!2.48e-07!41;UBERON:0006240!2.48e-07!41;UBERON:0001049!4.73e-07!57;UBERON:0005068!4.73e-07!57;UBERON:0006241!4.73e-07!57;UBERON:0007135!4.73e-07!57;UBERON:0003080!9.89e-07!42 | |ontology_enrichment_uberon=UBERON:0007023!4.38e-08!115;UBERON:0002780!2.48e-07!41;UBERON:0001890!2.48e-07!41;UBERON:0006240!2.48e-07!41;UBERON:0001049!4.73e-07!57;UBERON:0005068!4.73e-07!57;UBERON:0006241!4.73e-07!57;UBERON:0007135!4.73e-07!57;UBERON:0003080!9.89e-07!42 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.76e-09,114;UBERON:0001049,5.81e-08,56;UBERON:0005068,5.81e-08,56;UBERON:0006241,5.81e-08,56;UBERON:0007135,5.81e-08,56;UBERON:0003528,2.70e-07,34;UBERON:0002020,2.70e-07,34;UBERON:0002780,2.99e-07,41;UBERON:0001890,2.99e-07,41;UBERON:0003080,2.99e-07,41;UBERON:0006240,2.99e-07,41;UBERON:0000073,4.22e-07,53;UBERON:0002616,4.22e-07,53 | |||
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| ||
|short_description=p14@SRRM2 | |short_description=p14@SRRM2 | ||
}} | }} |
Latest revision as of 22:40, 15 September 2015
Short description: | p14@SRRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_SRRM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_BX647088_5end |
EntrezGene: | SRRM2 |
HGNC: | 16639 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.10e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.10e-11 | 42 |
defensive cell | 4.80e-10 | 48 |
phagocyte | 4.80e-10 | 48 |
myeloid leukocyte | 1.13e-07 | 72 |
leukocyte | 2.82e-07 | 136 |
hematopoietic stem cell | 3.44e-07 | 168 |
monopoietic cell | 4.26e-07 | 59 |
monocyte | 4.26e-07 | 59 |
monoblast | 4.26e-07 | 59 |
promonocyte | 4.26e-07 | 59 |
myeloid cell | 8.33e-07 | 108 |
common myeloid progenitor | 8.33e-07 | 108 |
granulocyte monocyte progenitor cell | 9.63e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.76e-09 | 114 |
neural tube | 5.81e-08 | 56 |
neural rod | 5.81e-08 | 56 |
future spinal cord | 5.81e-08 | 56 |
neural keel | 5.81e-08 | 56 |
brain grey matter | 2.70e-07 | 34 |
gray matter | 2.70e-07 | 34 |
regional part of forebrain | 2.99e-07 | 41 |
forebrain | 2.99e-07 | 41 |
anterior neural tube | 2.99e-07 | 41 |
future forebrain | 2.99e-07 | 41 |
regional part of nervous system | 4.22e-07 | 53 |
regional part of brain | 4.22e-07 | 53 |