FFCP PHASE1:Hg19::chr6:138192259..138192268,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7128 | |EntrezGene=7128 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11896 | |HGNC=11896 | ||
|TSSclassifier=strong | |||
|UniProt=F5H7A9,F5GYN2,F5H1G3 | |UniProt=F5H7A9,F5GYN2,F5H1G3 | ||
|association_with_transcript=-79bp_to_ENST00000535332,ENST00000535574,ENST00000539356_5end | |association_with_transcript=-79bp_to_ENST00000535332,ENST00000535574,ENST00000539356_5end | ||
|cluster_id=chr6:138192259..138192268,+ | |||
|coexpression_cluster_id=C817 | |coexpression_cluster_id=C817 | ||
|description=CAGE_peak_18_at_TNFAIP3_5end | |description=CAGE_peak_18_at_TNFAIP3_5end | ||
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|ontology_enrichment_celltype=CL:0000738!3.97e-31!140;CL:0002087!8.88e-25!119;CL:0002031!1.73e-24!124;CL:0000988!4.16e-24!182;CL:0000037!6.54e-23!172;CL:0000566!6.54e-23!172;CL:0002032!2.05e-22!165;CL:0000837!2.05e-22!165;CL:0002057!1.09e-16!42;CL:0000860!4.10e-15!45;CL:0000838!7.72e-15!52;CL:0000542!2.03e-14!53;CL:0000051!2.03e-14!53;CL:0000766!9.62e-13!76;CL:0000048!2.42e-11!430;CL:0000723!7.14e-11!436;CL:0000034!7.32e-11!444;CL:0000557!9.64e-11!71;CL:0000134!1.03e-10!358;CL:0000084!3.76e-10!25;CL:0000827!3.76e-10!25;CL:0002009!3.83e-10!65;CL:0002320!3.96e-10!365;CL:0000839!5.71e-10!70;CL:0002194!1.29e-09!63;CL:0000576!1.29e-09!63;CL:0000040!1.29e-09!63;CL:0000559!1.29e-09!63;CL:0000763!1.45e-09!112;CL:0000049!1.45e-09!112;CL:0000080!2.43e-08!6;CL:0000219!4.08e-08!390 | |ontology_enrichment_celltype=CL:0000738!3.97e-31!140;CL:0002087!8.88e-25!119;CL:0002031!1.73e-24!124;CL:0000988!4.16e-24!182;CL:0000037!6.54e-23!172;CL:0000566!6.54e-23!172;CL:0002032!2.05e-22!165;CL:0000837!2.05e-22!165;CL:0002057!1.09e-16!42;CL:0000860!4.10e-15!45;CL:0000838!7.72e-15!52;CL:0000542!2.03e-14!53;CL:0000051!2.03e-14!53;CL:0000766!9.62e-13!76;CL:0000048!2.42e-11!430;CL:0000723!7.14e-11!436;CL:0000034!7.32e-11!444;CL:0000557!9.64e-11!71;CL:0000134!1.03e-10!358;CL:0000084!3.76e-10!25;CL:0000827!3.76e-10!25;CL:0002009!3.83e-10!65;CL:0002320!3.96e-10!365;CL:0000839!5.71e-10!70;CL:0002194!1.29e-09!63;CL:0000576!1.29e-09!63;CL:0000040!1.29e-09!63;CL:0000559!1.29e-09!63;CL:0000763!1.45e-09!112;CL:0000049!1.45e-09!112;CL:0000080!2.43e-08!6;CL:0000219!4.08e-08!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.26e-30;33!CL:0002057;1.26e-30;33!CL:0000473;3.72e-21;39!CL:0000234;3.72e-21;39!CL:0000576;1.88e-18;48!CL:0000766;6.19e-17;69!CL:0002087;1.08e-11;104!CL:0002393;1.31e-09;6!CL:0002397;1.31e-09;6!CL:0000763;8.26e-09;100 | |ontology_enrichment_celltype_v019=CL:0000860;1.26e-30;33!CL:0002057;1.26e-30;33!CL:0000473;3.72e-21;39!CL:0000234;3.72e-21;39!CL:0000576;1.88e-18;48!CL:0000766;6.19e-17;69!CL:0002087;1.08e-11;104!CL:0002393;1.31e-09;6!CL:0002397;1.31e-09;6!CL:0000763;8.26e-09;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.57e-38,42;CL:0002057,5.57e-38,42;CL:0000473,8.82e-33,48;CL:0000234,8.82e-33,48;CL:0000766,1.39e-28,72;CL:0002194,1.68e-25,59;CL:0000576,1.68e-25,59;CL:0000040,1.68e-25,59;CL:0000559,1.68e-25,59;CL:0000839,2.52e-25,66;CL:0000557,6.76e-25,67;CL:0002009,1.47e-24,61;CL:0000738,4.50e-20,136;CL:0002031,2.76e-19,120;CL:0000988,3.56e-19,177;CL:0002087,2.61e-18,115;CL:0000763,9.64e-18,108;CL:0000049,9.64e-18,108;CL:0002032,3.27e-16,161;CL:0000837,3.27e-16,161;CL:0000037,2.46e-15,168;CL:0000134,1.39e-07,354;CL:0002320,2.50e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.74e-25;42 | |ontology_enrichment_development_v019=CL:0002057;1.74e-25;42 | ||
|ontology_enrichment_disease=DOID:2394!2.92e-08!14 | |ontology_enrichment_disease=DOID:2394!2.92e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:0060060;3.11e-07;1!DOID:0060061;3.11e-07;1!DOID:8691;3.11e-07;1 | |ontology_enrichment_disease_v019=DOID:0060060;3.11e-07;1!DOID:0060061;3.11e-07;1!DOID:8691;3.11e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.84e-07,1;DOID:0060061,2.84e-07,1;DOID:8691,2.84e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002193!4.88e-11!112;UBERON:0002390!1.42e-10!102;UBERON:0003061!1.42e-10!102;UBERON:0002384!8.11e-10!375;UBERON:0002371!9.68e-09!80;UBERON:0001474!1.17e-07!86;UBERON:0002405!3.28e-07!115;UBERON:0000992!6.79e-07!13 | |ontology_enrichment_uberon=UBERON:0002193!4.88e-11!112;UBERON:0002390!1.42e-10!102;UBERON:0003061!1.42e-10!102;UBERON:0002384!8.11e-10!375;UBERON:0002371!9.68e-09!80;UBERON:0001474!1.17e-07!86;UBERON:0002405!3.28e-07!115;UBERON:0000992!6.79e-07!13 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.45e-22,98;UBERON:0003061,1.45e-22,98;UBERON:0002371,1.55e-21,76;UBERON:0002193,4.38e-20,108;UBERON:0001474,1.06e-19,82;UBERON:0004765,1.24e-17,90;UBERON:0002405,6.00e-17,93;UBERON:0001434,1.65e-15,100;UBERON:0003081,6.94e-11,203;UBERON:0002204,6.70e-09,167;UBERON:0002384,5.56e-07,371 | |||
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|short_description=p18@TNFAIP3 | |short_description=p18@TNFAIP3 | ||
}} | }} |
Latest revision as of 03:26, 25 September 2015
Short description: | p18@TNFAIP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_TNFAIP3_5end |
Coexpression cluster: | C817_cord_CD14_mycosis_xeroderma_migratory_B_hairy |
Association with transcript: | -79bp_to_ENST00000535332, ENST00000535574, ENST00000539356_5end |
EntrezGene: | TNFAIP3 |
HGNC: | 11896 |
UniProt: | F5H7A9F5GYN2F5H1G3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.57e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.57e-38 | 42 |
defensive cell | 8.82e-33 | 48 |
phagocyte | 8.82e-33 | 48 |
myeloid leukocyte | 1.39e-28 | 72 |
monopoietic cell | 1.68e-25 | 59 |
monocyte | 1.68e-25 | 59 |
monoblast | 1.68e-25 | 59 |
promonocyte | 1.68e-25 | 59 |
myeloid lineage restricted progenitor cell | 2.52e-25 | 66 |
granulocyte monocyte progenitor cell | 6.76e-25 | 67 |
macrophage dendritic cell progenitor | 1.47e-24 | 61 |
leukocyte | 4.50e-20 | 136 |
hematopoietic lineage restricted progenitor cell | 2.76e-19 | 120 |
hematopoietic cell | 3.56e-19 | 177 |
nongranular leukocyte | 2.61e-18 | 115 |
myeloid cell | 9.64e-18 | 108 |
common myeloid progenitor | 9.64e-18 | 108 |
hematopoietic oligopotent progenitor cell | 3.27e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.27e-16 | 161 |
hematopoietic stem cell | 2.46e-15 | 168 |
mesenchymal cell | 1.39e-07 | 354 |
connective tissue cell | 2.50e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.45e-22 | 98 |
blood island | 1.45e-22 | 98 |
bone marrow | 1.55e-21 | 76 |
hemolymphoid system | 4.38e-20 | 108 |
bone element | 1.06e-19 | 82 |
skeletal element | 1.24e-17 | 90 |
immune system | 6.00e-17 | 93 |
skeletal system | 1.65e-15 | 100 |
lateral plate mesoderm | 6.94e-11 | 203 |
musculoskeletal system | 6.70e-09 | 167 |
connective tissue | 5.56e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.84e-07 | 1 |
cutaneous T cell lymphoma | 2.84e-07 | 1 |
mycosis fungoides | 2.84e-07 | 1 |