FFCP PHASE1:Hg19::chr2:177016272..177016286,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3233 | |EntrezGene=3233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5138 | |HGNC=5138 | ||
|TSSclassifier=strong | |||
|UniProt=P09016 | |UniProt=P09016 | ||
|association_with_transcript=159bp_to_NM_014621,uc002uks.2_5end | |association_with_transcript=159bp_to_NM_014621,uc002uks.2_5end | ||
|cluster_id=chr2:177016272..177016286,+ | |||
|description=CAGE_peak_2_at_HOXD4_5end | |description=CAGE_peak_2_at_HOXD4_5end | ||
|id=chr2:177016272..177016286,+ | |id=chr2:177016272..177016286,+ | ||
|ontology_enrichment_celltype=CL:1000497!6.71e-16!18;CL:0002518!6.71e-16!18;CL:0002620!1.49e-13!23;CL:1000449!5.53e-13!16;CL:1000507!8.02e-13!12;CL:1000494!8.02e-13!12;CL:0002681!2.68e-11!13;CL:0002584!2.68e-11!13 | |ontology_enrichment_celltype=CL:1000497!6.71e-16!18;CL:0002518!6.71e-16!18;CL:0002620!1.49e-13!23;CL:1000449!5.53e-13!16;CL:1000507!8.02e-13!12;CL:1000494!8.02e-13!12;CL:0002681!2.68e-11!13;CL:0002584!2.68e-11!13 | ||
|ontology_enrichment_celltype_v019=CL:1000497;4.03e-22;17!CL:0002518;4.03e-22;17!CL:1000507;2.78e-17;10!CL:1000494;2.78e-17;10!CL:1000449;3.34e-15;15!CL:0002681;4.64e-14;12!CL:0002584;4.64e-14;12!CL:0000159;3.50e-11;2!CL:0000650;5.93e-11;2!CL:1000500;5.93e-11;2!CL:1000618;5.93e-11;2!CL:1001318;5.93e-11;2!CL:0002173;5.93e-11;2!CL:0002620;1.75e-09;23!CL:0000239;2.42e-07;3!CL:1000615;2.42e-07;3!CL:0002306;2.42e-07;3!CL:1000746;7.44e-07;7!CL:1000612;7.44e-07;7 | |ontology_enrichment_celltype_v019=CL:1000497;4.03e-22;17!CL:0002518;4.03e-22;17!CL:1000507;2.78e-17;10!CL:1000494;2.78e-17;10!CL:1000449;3.34e-15;15!CL:0002681;4.64e-14;12!CL:0002584;4.64e-14;12!CL:0000159;3.50e-11;2!CL:0000650;5.93e-11;2!CL:1000500;5.93e-11;2!CL:1000618;5.93e-11;2!CL:1001318;5.93e-11;2!CL:0002173;5.93e-11;2!CL:0002620;1.75e-09;23!CL:0000239;2.42e-07;3!CL:1000615;2.42e-07;3!CL:0002306;2.42e-07;3!CL:1000746;7.44e-07;7!CL:1000612;7.44e-07;7 | ||
|ontology_enrichment_celltype_v019_2=CL:1000497,6.76e-22,17;CL:0002518,6.76e-22,17;CL:1000507,3.90e-17,10;CL:1000494,3.90e-17,10;CL:1000449,5.45e-15,15;CL:0002681,7.92e-14,12;CL:0002584,7.92e-14,12;CL:0000159,3.70e-11,2;CL:0000650,9.09e-11,2;CL:1000500,9.09e-11,2;CL:1000618,9.09e-11,2;CL:1001318,9.09e-11,2;CL:0002173,9.09e-11,2;CL:0002620,2.22e-09,23;CL:0000239,2.50e-07,3;CL:1000615,2.50e-07,3;CL:0002306,2.50e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;3.20e-09;5!DOID:450;3.20e-09;5!DOID:66;3.20e-09;5!DOID:423;3.20e-09;5!DOID:0080000;3.20e-09;5!DOID:11722;3.20e-09;5 | |ontology_enrichment_disease_v019=DOID:17;3.20e-09;5!DOID:450;3.20e-09;5!DOID:66;3.20e-09;5!DOID:423;3.20e-09;5!DOID:0080000;3.20e-09;5!DOID:11722;3.20e-09;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,2.51e-09,5;DOID:450,2.51e-09,5;DOID:66,2.51e-09,5;DOID:423,2.51e-09,5;DOID:0080000,2.51e-09,5;DOID:11722,2.51e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000489!1.57e-19!32;UBERON:0002199!1.23e-14!45;UBERON:0002416!1.23e-14!45;UBERON:0006555!3.36e-14!17;UBERON:0005103!3.36e-14!17;UBERON:0000083!3.36e-14!17;UBERON:0009201!3.36e-14!17;UBERON:0004819!3.36e-14!17;UBERON:0006553!3.36e-14!17;UBERON:0003074!3.36e-14!17;UBERON:0003060!3.36e-14!17;UBERON:0003887!3.91e-14!21;UBERON:0002113!4.44e-14!27;UBERON:0003918!4.44e-14!27;UBERON:0005095!4.44e-14!27;UBERON:0007687!4.44e-14!27;UBERON:0004876!1.30e-13!20;UBERON:0003886!2.24e-13!63;UBERON:0000080!3.37e-13!18;UBERON:0002120!3.37e-13!18;UBERON:0004875!3.37e-13!18;UBERON:0005721!3.37e-13!18;UBERON:0005754!3.37e-13!18;UBERON:0007297!3.37e-13!18;UBERON:0002097!4.25e-13!40;UBERON:0004211!5.53e-13!16;UBERON:0001285!5.53e-13!16;UBERON:0007684!5.53e-13!16;UBERON:0003220!5.53e-13!16;UBERON:0004208!5.53e-13!16;UBERON:0009773!8.02e-13!12;UBERON:0001231!8.02e-13!12;UBERON:0004810!8.02e-13!12;UBERON:0002553!4.23e-12!70;UBERON:0001225!2.68e-11!13;UBERON:0008987!2.68e-11!13;UBERON:0003076!5.40e-11!15;UBERON:0003057!5.40e-11!15;UBERON:0001008!1.20e-10!45;UBERON:0006554!8.05e-10!44;UBERON:0000058!1.56e-09!26;UBERON:0001851!1.07e-08!16;UBERON:0003064!1.11e-08!37;UBERON:0000464!4.74e-08!104;UBERON:0000353!4.90e-08!17;UBERON:0003103!6.20e-08!69;UBERON:0000475!6.59e-08!365;UBERON:0004733!1.25e-07!12;UBERON:0002028!1.25e-07!12;UBERON:0007277!1.25e-07!12;UBERON:0005172!2.25e-07!55;UBERON:0005173!2.25e-07!55;UBERON:0002298!2.92e-07!8;UBERON:0003133!4.53e-07!48;UBERON:0004732!6.53e-07!13 | |ontology_enrichment_uberon=UBERON:0000489!1.57e-19!32;UBERON:0002199!1.23e-14!45;UBERON:0002416!1.23e-14!45;UBERON:0006555!3.36e-14!17;UBERON:0005103!3.36e-14!17;UBERON:0000083!3.36e-14!17;UBERON:0009201!3.36e-14!17;UBERON:0004819!3.36e-14!17;UBERON:0006553!3.36e-14!17;UBERON:0003074!3.36e-14!17;UBERON:0003060!3.36e-14!17;UBERON:0003887!3.91e-14!21;UBERON:0002113!4.44e-14!27;UBERON:0003918!4.44e-14!27;UBERON:0005095!4.44e-14!27;UBERON:0007687!4.44e-14!27;UBERON:0004876!1.30e-13!20;UBERON:0003886!2.24e-13!63;UBERON:0000080!3.37e-13!18;UBERON:0002120!3.37e-13!18;UBERON:0004875!3.37e-13!18;UBERON:0005721!3.37e-13!18;UBERON:0005754!3.37e-13!18;UBERON:0007297!3.37e-13!18;UBERON:0002097!4.25e-13!40;UBERON:0004211!5.53e-13!16;UBERON:0001285!5.53e-13!16;UBERON:0007684!5.53e-13!16;UBERON:0003220!5.53e-13!16;UBERON:0004208!5.53e-13!16;UBERON:0009773!8.02e-13!12;UBERON:0001231!8.02e-13!12;UBERON:0004810!8.02e-13!12;UBERON:0002553!4.23e-12!70;UBERON:0001225!2.68e-11!13;UBERON:0008987!2.68e-11!13;UBERON:0003076!5.40e-11!15;UBERON:0003057!5.40e-11!15;UBERON:0001008!1.20e-10!45;UBERON:0006554!8.05e-10!44;UBERON:0000058!1.56e-09!26;UBERON:0001851!1.07e-08!16;UBERON:0003064!1.11e-08!37;UBERON:0000464!4.74e-08!104;UBERON:0000353!4.90e-08!17;UBERON:0003103!6.20e-08!69;UBERON:0000475!6.59e-08!365;UBERON:0004733!1.25e-07!12;UBERON:0002028!1.25e-07!12;UBERON:0007277!1.25e-07!12;UBERON:0005172!2.25e-07!55;UBERON:0005173!2.25e-07!55;UBERON:0002298!2.92e-07!8;UBERON:0003133!4.53e-07!48;UBERON:0004732!6.53e-07!13 | ||
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| ||
|short_description=p2@HOXD4 | |short_description=p2@HOXD4 | ||
}} | }} |
Latest revision as of 09:26, 18 September 2015
Short description: | p2@HOXD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 159bp_to_NM_014621, uc002uks.2_5end |
EntrezGene: | HOXD4 |
HGNC: | 5138 |
UniProt: | P09016 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 6.76e-22 | 17 |
kidney epithelial cell | 6.76e-22 | 17 |
kidney tubule cell | 3.90e-17 | 10 |
nephron tubule epithelial cell | 3.90e-17 | 10 |
epithelial cell of nephron | 5.45e-15 | 15 |
kidney cortical cell | 7.92e-14 | 12 |
renal cortical epithelial cell | 7.92e-14 | 12 |
seromucus secreting cell | 3.70e-11 | 2 |
mesangial cell | 9.09e-11 | 2 |
kidney interstitial cell | 9.09e-11 | 2 |
juxtaglomerular complex cell | 9.09e-11 | 2 |
renal interstitial pericyte | 9.09e-11 | 2 |
extraglomerular mesangial cell | 9.09e-11 | 2 |
skin fibroblast | 2.22e-09 | 23 |
brush border epithelial cell | 2.50e-07 | 3 |
kidney cortex tubule cell | 2.50e-07 | 3 |
epithelial cell of proximal tubule | 2.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.51e-09 | 5 |
myotonic disease | 2.51e-09 | 5 |
muscle tissue disease | 2.51e-09 | 5 |
myopathy | 2.51e-09 | 5 |
muscular disease | 2.51e-09 | 5 |
myotonic dystrophy | 2.51e-09 | 5 |