FF:12148-128F6: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090325, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12201
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005124

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12201		CAGE		DRX008067		DRR008939

Accession ID Hg19

Library id		BAM		CTSS
CNhs12201		DRZ000364		DRZ001749

Accession ID Hg38

Library id		BAM		CTSS
CNhs12201		DRZ011714		DRZ013099

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.162
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.19
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.223
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.114
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0609
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.403
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.39
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.776
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.697
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.114
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0469
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.348
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0609
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.114
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.162
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.399
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.219
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.462
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.212
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.114
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.372
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.119
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.569
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.255
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.241
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0609
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.244
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.205
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.205
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.224
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.907
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.114
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0609
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0609
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.73
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12201

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.22595e-9
MA0003.1	MA0003.1	0.491
MA0004.1	MA0004.1	0.689
MA0006.1	MA0006.1	0.29
MA0007.1	MA0007.1	0.676
MA0009.1	MA0009.1	0.251
MA0014.1	MA0014.1	0.81
MA0017.1	MA0017.1	0.0358
MA0018.2	MA0018.2	0.304
MA0019.1	MA0019.1	0.516
MA0024.1	MA0024.1	0.243
MA0025.1	MA0025.1	0.346
MA0027.1	MA0027.1	0.67
MA0028.1	MA0028.1	2.4628e-7
MA0029.1	MA0029.1	0.919
MA0030.1	MA0030.1	0.0252
MA0031.1	MA0031.1	0.00235
MA0035.2	MA0035.2	0.155
MA0038.1	MA0038.1	0.18
MA0039.2	MA0039.2	0.456
MA0040.1	MA0040.1	0.224
MA0041.1	MA0041.1	0.229
MA0042.1	MA0042.1	0.206
MA0043.1	MA0043.1	0.263
MA0046.1	MA0046.1	0.547
MA0047.2	MA0047.2	0.0231
MA0048.1	MA0048.1	0.189
MA0050.1	MA0050.1	6.78281e-10
MA0051.1	MA0051.1	2.88432e-5
MA0052.1	MA0052.1	0.0493
MA0055.1	MA0055.1	0.634
MA0057.1	MA0057.1	0.604
MA0058.1	MA0058.1	0.396
MA0059.1	MA0059.1	0.516
MA0060.1	MA0060.1	0.185
MA0061.1	MA0061.1	1.28376e-4
MA0062.2	MA0062.2	4.13705e-26
MA0065.2	MA0065.2	0.0469
MA0066.1	MA0066.1	0.369
MA0067.1	MA0067.1	0.21
MA0068.1	MA0068.1	0.388
MA0069.1	MA0069.1	0.687
MA0070.1	MA0070.1	0.358
MA0071.1	MA0071.1	0.835
MA0072.1	MA0072.1	0.278
MA0073.1	MA0073.1	0.808
MA0074.1	MA0074.1	0.718
MA0076.1	MA0076.1	3.51631e-12
MA0077.1	MA0077.1	0.0518
MA0078.1	MA0078.1	0.706
MA0079.2	MA0079.2	0.935
MA0080.2	MA0080.2	1.9682e-14
MA0081.1	MA0081.1	0.00164
MA0083.1	MA0083.1	0.0349
MA0084.1	MA0084.1	0.587
MA0087.1	MA0087.1	0.516
MA0088.1	MA0088.1	0.0413
MA0090.1	MA0090.1	4.64849e-4
MA0091.1	MA0091.1	0.99
MA0092.1	MA0092.1	0.853
MA0093.1	MA0093.1	0.688
MA0099.2	MA0099.2	0.159
MA0100.1	MA0100.1	0.348
MA0101.1	MA0101.1	0.0465
MA0102.2	MA0102.2	0.0659
MA0103.1	MA0103.1	0.232
MA0104.2	MA0104.2	0.122
MA0105.1	MA0105.1	1.61252e-5
MA0106.1	MA0106.1	0.181
MA0107.1	MA0107.1	0.0513
MA0108.2	MA0108.2	8.998e-9
MA0111.1	MA0111.1	0.274
MA0112.2	MA0112.2	0.504
MA0113.1	MA0113.1	0.718
MA0114.1	MA0114.1	0.339
MA0115.1	MA0115.1	0.811
MA0116.1	MA0116.1	6.97936e-5
MA0117.1	MA0117.1	0.542
MA0119.1	MA0119.1	0.302
MA0122.1	MA0122.1	0.188
MA0124.1	MA0124.1	0.607
MA0125.1	MA0125.1	0.545
MA0131.1	MA0131.1	0.35
MA0135.1	MA0135.1	0.511
MA0136.1	MA0136.1	8.19029e-28
MA0137.2	MA0137.2	0.00216
MA0138.2	MA0138.2	0.99
MA0139.1	MA0139.1	0.00597
MA0140.1	MA0140.1	0.187
MA0141.1	MA0141.1	0.782
MA0142.1	MA0142.1	0.641
MA0143.1	MA0143.1	0.445
MA0144.1	MA0144.1	0.0561
MA0145.1	MA0145.1	0.702
MA0146.1	MA0146.1	0.329
MA0147.1	MA0147.1	0.214
MA0148.1	MA0148.1	0.147
MA0149.1	MA0149.1	0.36
MA0150.1	MA0150.1	0.526
MA0152.1	MA0152.1	0.0208
MA0153.1	MA0153.1	0.574
MA0154.1	MA0154.1	0.00789
MA0155.1	MA0155.1	0.773
MA0156.1	MA0156.1	1.68776e-31
MA0157.1	MA0157.1	0.00485
MA0159.1	MA0159.1	0.185
MA0160.1	MA0160.1	0.413
MA0162.1	MA0162.1	0.942
MA0163.1	MA0163.1	4.77974e-9
MA0164.1	MA0164.1	0.587
MA0258.1	MA0258.1	0.674
MA0259.1	MA0259.1	0.442

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12201

Novel motif	Logo	P-value
1	1	0.451
10	10	0.0303
100	100	0.704
101	101	0.349
102	102	0.694
103	103	0.103
104	104	0.541
105	105	0.125
106	106	0.74
107	107	0.0366
108	108	0.489
109	109	0.0743
11	11	0.151
110	110	0.592
111	111	0.472
112	112	0.444
113	113	0.18
114	114	0.336
115	115	0.28
116	116	0.369
117	117	0.00334
118	118	0.466
119	119	0.932
12	12	0.46
120	120	0.5
121	121	0.874
122	122	0.367
123	123	0.697
124	124	0.181
125	125	0.828
126	126	0.148
127	127	0.321
128	128	0.81
129	129	0.221
13	13	0.614
130	130	0.865
131	131	0.354
132	132	0.526
133	133	0.981
134	134	0.639
135	135	0.417
136	136	0.913
137	137	0.0264
138	138	0.218
139	139	0.0745
14	14	0.327
140	140	0.226
141	141	0.871
142	142	0.827
143	143	3.76691e-4
144	144	0.798
145	145	0.551
146	146	0.239
147	147	0.0127
148	148	0.242
149	149	0.921
15	15	0.133
150	150	0.996
151	151	0.435
152	152	0.33
153	153	0.882
154	154	0.816
155	155	0.0616
156	156	0.841
157	157	0.31
158	158	0.151
159	159	0.114
16	16	0.939
160	160	0.791
161	161	0.19
162	162	0.12
163	163	0.874
164	164	0.416
165	165	0.589
166	166	0.678
167	167	0.534
168	168	0.0274
169	169	0.993
17	17	0.885
18	18	0.818
19	19	0.228
2	2	0.666
20	20	0.959
21	21	0.736
22	22	0.855
23	23	0.653
24	24	0.599
25	25	0.0333
26	26	0.981
27	27	0.024
28	28	0.317
29	29	0.0529
3	3	0.0715
30	30	0.608
31	31	0.788
32	32	0.065
33	33	0.332
34	34	0.788
35	35	0.0922
36	36	0.0581
37	37	0.232
38	38	0.656
39	39	0.345
4	4	0.825
40	40	0.63
41	41	0.0364
42	42	0.0726
43	43	0.34
44	44	0.645
45	45	0.896
46	46	0.317
47	47	0.0964
48	48	0.254
49	49	0.265
5	5	0.103
50	50	0.522
51	51	0.579
52	52	0.204
53	53	0.312
54	54	0.638
55	55	0.435
56	56	0.729
57	57	0.857
58	58	0.0528
59	59	0.35
6	6	0.707
60	60	0.431
61	61	0.071
62	62	0.0347
63	63	0.938
64	64	0.285
65	65	0.89
66	66	0.909
67	67	0.886
68	68	0.698
69	69	0.694
7	7	0.179
70	70	0.0388
71	71	0.147
72	72	0.061
73	73	0.615
74	74	0.36
75	75	0.0252
76	76	0.279
77	77	0.436
78	78	0.389
79	79	0.511
8	8	0.682
80	80	6.56502e-4
81	81	0.46
82	82	0.187
83	83	0.836
84	84	0.758
85	85	0.669
86	86	0.14
87	87	0.377
88	88	0.652
89	89	0.727
9	9	0.378
90	90	0.0425
91	91	0.904
92	92	0.634
93	93	0.233
94	94	0.112
95	95	0.0115
96	96	0.187
97	97	0.53
98	98	0.171
99	99	0.0176

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12201

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005124
+|accession_numbers=CAGE;DRX008067;DRR008939;DRZ000364;DRZ001749;DRZ011714;DRZ013099
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.07!116.85!TCF7;;chr4:109087445..109087463,-!p1@LEF1!2.03!107.36!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.91!79.96!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.88!74.08!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.85!93.36!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.82!65.80!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.81!63.39!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!1.68!62.79!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.66!194.69!TCF7;;chr2:231090433..231090469,+!p1@SP140!1.65!43.37!SP140;;chr3:27763807..27763822,-!p1@EOMES!1.59!38.10!EOMES;;chrY:21906594..21906622,-!p1@KDM5D!1.57!35.99!KDM5D;;chr9:117150254..117150271,-!p1@AKNA!1.54!89.44!AKNA;;chr3:18486354..18486377,-!p2@SATB1!1.53!40.50!SATB1;;chr5:133451347..133451358,+!p3@TCF7!1.51!31.32!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.49!54.66!RUNX3;;chr3:71355163..71355209,-!p5@FOXP1!1.49!40.81!FOXP1;;chr19:16435625..16435682,+!p1@KLF2!1.46!862.19!KLF2;;chr3:71542615..71542644,-!p12@FOXP1!1.45!27.40!FOXP1;;chr6:106546808..106546833,+!p3@PRDM1!1.43!32.37!PRDM1;;chr11:47400078..47400106,-!p1@SPI1!1.42!25.45!SPI1;;chr7:50343895..50343936,+!p5@IKZF1!1.40!24.24!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.39!117.15!RORA;;chr17:37934365..37934387,-!p2@IKZF3!1.39!23.49!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.39!23.34!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.38!33.43!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.31!25.75!BATF;;chr17:38020392..38020477,-!p1@IKZF3!1.31!19.27!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.30!52.70!ZNF101;;chr9:3525727..3525828,-!p2@RFX3!1.29!46.23!RFX3;;chr14:99738059..99738086,-!p2@BCL11B!1.29!18.52!BCL11B;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.93!HOPX;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.62!IRF8;;chr4:109090075..109090095,-!p2@LEF1!1.26!17.17!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.26!17.01!HOPX;;chr7:50344289..50344323,+!p1@IKZF1!1.25!16.86!IKZF1;;chr1:26697243..26697258,-!p1@ZNF683!1.25!16.71!ZNF683;;chr8:67525443..67525459,-!p2@MYBL1!1.21!22.59!MYBL1;;chr3:71542684..71542720,-!p18@FOXP1!1.21!15.36!FOXP1;;chr3:18480217..18480239,-!p3@SATB1!1.21!15.06!SATB1;;chr13:41593425..41593480,-!p1@ELF1!1.19!92.00!ELF1;;chr2:231090471..231090504,+!p2@SP140!1.18!14.30!SP140;;chr11:128392085..128392232,-!p1@ETS1!1.17!458.50!ETS1;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.11!GATA3;;chr4:57522674..57522699,-!p5@HOPX!1.17!13.85!HOPX;;chr20:56195474..56195506,-!p1@ZBP1!1.17!13.70!ZBP1;;chr6:391743..391759,+!p1@IRF4!1.16!13.40!IRF4;;chr11:128392273..128392308,-!p2@ETS1!1.13!53.00!ETS1;;chr10:8096631..8096660,+!p1@GATA3!1.12!14.91!GATA3;;chr11:128563948..128564003,+!p1@FLI1!1.10!139.13!FLI1;;chr6:91006518..91006570,-!p1@BACH2!1.09!26.20!BACH2;;chr6:106546731..106546755,+!p5@PRDM1!1.09!11.44!PRDM1;;chr7:50344251..50344288,+!p3@IKZF1!1.09!11.29!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.09!11.29!IKZF3;;chr16:88752889..88752921,-!p1@SNAI3!1.08!12.95!SNAI3;;chr4:109089901..109089930,-!p3@LEF1!1.07!10.69!LEF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.06!22.89!ZBTB25;;chr4:57522513..57522548,-!p4@HOPX!1.06!10.54!HOPX;;chrX:106960285..106960299,-!p1@TSC22D3!1.05!277.06!TSC22D3;;chr7:50348268..50348366,+!p4@IKZF1!1.04!9.94!IKZF1;;chrX:49121165..49121179,-!p1@FOXP3!1.03!9.79!FOXP3;;chr1:26697189..26697205,-!p2@ZNF683!1.02!9.49!ZNF683;;chr17:38020481..38020506,-!p7@IKZF3!1.02!9.49!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.01!20.63!ZNF263;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!30.12!ZMAT1;;chr16:68119324..68119364,+!p1@NFATC3!0.99!40.50!NFATC3;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.04!ZNF483;;chr12:54778471..54778528,-!p1@ZNF385A!0.99!8.88!ZNF385A;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.88!IKZF3;;chr3:18487057..18487105,-!p4@SATB1!0.99!8.73!SATB1;;chr6:45296048..45296082,+!p1@RUNX2!0.97!9.64!RUNX2;;chr6:106546786..106546802,+!p6@PRDM1!0.97!8.43!PRDM1;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.28!FOXP1;;chr17:37934204..37934241,-!p3@IKZF3!0.97!8.28!IKZF3;;chr4:38665769..38665801,+!p2@KLF3!0.96!75.59!KLF3;;chr21:36421535..36421610,-!p2@RUNX1!0.96!29.51!RUNX1;;chr14:75988831..75988847,+!p2@BATF!0.96!8.13!BATF;;chr2:178128250..178128293,-!p6@NFE2L2!0.95!20.33!NFE2L2;;chr19:38085768..38085821,+!p1@ZNF540!0.95!11.90!ZNF540;;chr4:109088940..109089037,-!p4@LEF1!0.95!7.98!LEF1;;chr1:25291475..25291511,-!p2@RUNX3!0.95!7.83!RUNX3;;chr21:36421347..36421380,-!p8@RUNX1!0.95!7.83!RUNX1;;chr19:19729477..19729542,-!p1@PBX4!0.93!16.56!PBX4;;chr13:74707894..74707947,-!p6@KLF12!0.93!8.43!KLF12;;chr3:18466787..18466839,-!p1@SATB1!0.92!34.18!SATB1;;chr4:109088089..109088101,-!p11@LEF1!0.92!7.23!LEF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.91!9.64!TSHZ2;;chr1:92951607..92951661,-!p1@GFI1!0.91!7.08!GFI1;;chr20:56195525..56195556,-!p2@ZBP1!0.91!7.08!ZBP1;;chr2:145277640..145277771,-!p1@ZEB2!0.90!97.27!ZEB2;;chr6:143266297..143266356,-!p1@HIVEP2!0.90!34.78!HIVEP2;;chr8:60031619..60031676,-!p1@TOX!0.90!15.66!TOX;;chr4:109088130..109088163,-!p13@LEF1!0.90!6.93!LEF1;;chr3:71179699.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12201.12148-128F6.hg38.nobarcode.ctss.bed.gz
 |id=FF:12148-128F6
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
+|library_id=CNhs12201
+|library_id_phase_based=2:CNhs12201
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12148
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12148
 |name=CD8+ T Cells (pluriselect), donor090325, donation1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12201,LSID976,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
@@ Line 62: / Line 79: @@
 |rna_weight_ug=4.42287
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 83: / Line 101: @@
 |top_motifs=ELF1,2,4:2.63529550636;RUNX1..3:2.27513047476;RORA:2.16212482132;ETS1,2:2.08956907869;T:2.05670579376;STAT1,3:1.86036088088;PDX1:1.83377990879;PAX3,7:1.76322894271;FOX{D1,D2}:1.74682510301;FOXO1,3,4:1.66813753446;DMAP1_NCOR{1,2}_SMARC:1.60153762551;SPI1:1.6008162909;CDX1,2,4:1.54771721068;TLX2:1.53980488977;ELK1,4_GABP{A,B1}:1.51100642458;IRF1,2:1.46313295388;HMX1:1.45666181011;BPTF:1.39209646949;SPIB:1.38382815034;FOX{F1,F2,J1}:1.36934351805;RFX2..5_RFXANK_RFXAP:1.29543124996;PAX6:1.08430815518;IRF7:1.0801313043;TGIF1:1.07173387606;CRX:0.991712883879;CREB1:0.924197548773;LEF1_TCF7_TCF7L1,2:0.83228906606;PBX1:0.789536913823;GATA6:0.786009484431;BREu{core}:0.746876822367;NANOG{mouse}:0.732716775411;FOXN1:0.677971375442;SPZ1:0.67792724817;ATF5_CREB3:0.670538206249;NFATC1..3:0.637100309271;NFIL3:0.633022845021;NRF1:0.602247714077;VSX1,2:0.562876611705;FOX{I1,J2}:0.541571016619;YY1:0.527860203283;PAX2:0.523448310576;FOXA2:0.51477439133;NFKB1_REL_RELA:0.508518529314;SREBF1,2:0.491655581206;ALX1:0.46466016954;EP300:0.45484104658;NKX2-2,8:0.42881501876;IKZF2:0.414415719008;MYOD1:0.4082334221;ZEB1:0.368783719768;FOXQ1:0.349238089121;HBP1_HMGB_SSRP1_UBTF:0.318438357024;RBPJ:0.294211111162;SNAI1..3:0.271613425779;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.266682264077;ZNF143:0.252311823022;SOX5:0.246768182212;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239153167918;AHR_ARNT_ARNT2:0.226432488727;RFX1:0.220667606072;TAL1_TCF{3,4,12}:0.199764426716;ATF4:0.198188325131;RXRA_VDR{dimer}:0.19225483829;FOXP3:0.17995449719;HES1:0.177721542048;ATF2:0.139666932173;AR:0.135583364128;NFIX:0.134037273889;ZNF148:0.133441452242;STAT5{A,B}:0.112326312269;GCM1,2:0.10134960345;MAFB:0.0963467045397;MYB:0.0923398963344;NANOG:0.0693093641197;NKX6-1,2:0.0633585515165;JUN:0.0227073872909;CEBPA,B_DDIT3:0.0159729792777;HOX{A6,A7,B6,B7}:0.00482933245469;OCT4_SOX2{dimer}:0.00286933047197;CUX2:-0.0151826210731;HLF:-0.0466548606633;NKX2-1,4:-0.053285417658;NR5A1,2:-0.0632702369695;LMO2:-0.0654533459332;TBX4,5:-0.0706057617195;SOX2:-0.0893052255413;HMGA1,2:-0.0903948597744;PAX4:-0.0942608376583;ADNP_IRX_SIX_ZHX:-0.119273783354;NFE2L1:-0.123003121258;NR1H4:-0.139102928694;STAT2,4,6:-0.180886311394;NFY{A,B,C}:-0.195748330936;FOSL2:-0.212864062499;ZBTB16:-0.236206517927;PRRX1,2:-0.257477362892;POU1F1:-0.262012721649;HNF1A:-0.269979894115;E2F1..5:-0.295051672363;HNF4A_NR2F1,2:-0.299783022748;GLI1..3:-0.300182802825;NR3C1:-0.308685360497;PAX8:-0.311207959065;MYFfamily:-0.369929461458;NHLH1,2:-0.371782678969;TFAP4:-0.374977405248;POU2F1..3:-0.379613089305;DBP:-0.385030158848;FOXD3:-0.392148578142;HIF1A:-0.394735656063;ATF6:-0.405160024185;BACH2:-0.416312134773;FOS_FOS{B,L1}_JUN{B,D}:-0.437709838252;NFE2L2:-0.44889925794;PAX5:-0.468477428978;ZNF238:-0.477860618519;POU5F1:-0.486325762018;MZF1:-0.489986907624;MTF1:-0.506577334674;RREB1:-0.517822670125;ALX4:-0.530576218502;FOXP1:-0.531870493096;ESR1:-0.56073825654;ZNF423:-0.567615424532;NFE2:-0.584059991793;GFI1:-0.591726531225;HOXA9_MEIS1:-0.612144794398;MEF2{A,B,C,D}:-0.622956768076;ZFP161:-0.629632863939;REST:-0.641092090413;ARID5B:-0.662823353337;SRF:-0.667744666919;FOXM1:-0.691334720572;GATA4:-0.692206570635;ZBTB6:-0.69885940465;EGR1..3:-0.716087141453;HAND1,2:-0.719862577369;SMAD1..7,9:-0.730803281543;NKX3-1:-0.751457132262;MAZ:-0.753639277245;PATZ1:-0.755024218651;MTE{core}:-0.777340460075;SOX{8,9,10}:-0.786863484408;ZNF384:-0.79998973618;MED-1{core}:-0.802841205945;TFCP2:-0.806514856085;NKX3-2:-0.829405037601;HSF1,2:-0.863661448988;NKX2-3_NKX2-5:-0.869325880767;PPARG:-0.90771905706;EVI1:-0.910005470578;PRDM1:-0.913027915096;XCPE1{core}:-0.928805371207;TP53:-0.983546057945;KLF4:-1.01672323161;bHLH_family:-1.03037844829;AIRE:-1.03464812498;XBP1:-1.03473527418;LHX3,4:-1.0420388113;GTF2I:-1.07329439427;HOX{A5,B5}:-1.10066702654;GFI1B:-1.1426007593;EN1,2:-1.14585012121;SP1:-1.14685322625;CDC5L:-1.17144367386;MYBL2:-1.17899598808;EBF1:-1.20419000052;RXR{A,B,G}:-1.21251516673;SOX17:-1.26178282636;TFAP2B:-1.26666163714;TLX1..3_NFIC{dimer}:-1.33168303089;GZF1:-1.35896145763;PITX1..3:-1.36990753447;TFDP1:-1.38064509112;HOX{A4,D4}:-1.38943899221;UFEwm:-1.41144321932;ZIC1..3:-1.43757538583;ONECUT1,2:-1.45050461798;HIC1:-1.50252373481;NR6A1:-1.50826273857;ESRRA:-1.53072204083;TBP:-1.55261757168;TFAP2{A,C}:-1.62486464176;GTF2A1,2:-1.62531923099;POU6F1:-1.65674572561;TEAD1:-1.67390743111;TOPORS:-1.83873507674;TEF:-1.86852564003;PAX1,9:-1.89242382072;FOXL1:-2.06738457861;POU3F1..4:-2.07960492938;IKZF1:-2.38537268292
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12148-128F6;search_select_hide=table117:FF:12148-128F6
 }}

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FF:12148-128F6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:32, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0