FF:11895-125E5: Difference between revisions

Latest revision as of 18:27, 4 June 2020

Name:	Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
Species:	Human (Homo sapiens)
Library ID:	CNhs13498
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	56
cell type	unclassifiable
cell line	Hep-2
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2b
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005959

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13498		CAGE		DRX007789		DRR008661

Accession ID Hg19

Library id		BAM		CTSS
CNhs13498		DRZ000086		DRZ001471

Accession ID Hg38

Library id		BAM		CTSS
CNhs13498		DRZ011436		DRZ012821

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.785
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0396
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.201
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0543
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0601
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0778
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.726
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.187
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0413
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.799
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.515
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.478
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.144
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13498

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.199
MA0003.1	MA0003.1	0.762
MA0004.1	MA0004.1	0.0585
MA0006.1	MA0006.1	0.547
MA0007.1	MA0007.1	0.527
MA0009.1	MA0009.1	0.554
MA0014.1	MA0014.1	0.383
MA0017.1	MA0017.1	0.135
MA0018.2	MA0018.2	0.772
MA0019.1	MA0019.1	0.797
MA0024.1	MA0024.1	6.50421e-8
MA0025.1	MA0025.1	0.027
MA0027.1	MA0027.1	0.844
MA0028.1	MA0028.1	1.87786e-5
MA0029.1	MA0029.1	0.454
MA0030.1	MA0030.1	0.276
MA0031.1	MA0031.1	0.287
MA0035.2	MA0035.2	0.696
MA0038.1	MA0038.1	0.847
MA0039.2	MA0039.2	0.0608
MA0040.1	MA0040.1	0.484
MA0041.1	MA0041.1	0.33
MA0042.1	MA0042.1	0.394
MA0043.1	MA0043.1	0.134
MA0046.1	MA0046.1	0.765
MA0047.2	MA0047.2	0.735
MA0048.1	MA0048.1	0.117
MA0050.1	MA0050.1	0.0726
MA0051.1	MA0051.1	0.794
MA0052.1	MA0052.1	0.0588
MA0055.1	MA0055.1	9.89264e-5
MA0057.1	MA0057.1	0.238
MA0058.1	MA0058.1	0.0103
MA0059.1	MA0059.1	0.00427
MA0060.1	MA0060.1	0.153
MA0061.1	MA0061.1	0.447
MA0062.2	MA0062.2	0.00785
MA0065.2	MA0065.2	0.00567
MA0066.1	MA0066.1	0.475
MA0067.1	MA0067.1	0.496
MA0068.1	MA0068.1	3.20424e-4
MA0069.1	MA0069.1	0.28
MA0070.1	MA0070.1	0.644
MA0071.1	MA0071.1	0.00788
MA0072.1	MA0072.1	0.561
MA0073.1	MA0073.1	0.225
MA0074.1	MA0074.1	0.394
MA0076.1	MA0076.1	5.36283e-5
MA0077.1	MA0077.1	0.9
MA0078.1	MA0078.1	0.322
MA0079.2	MA0079.2	0.339
MA0080.2	MA0080.2	1.27419e-7
MA0081.1	MA0081.1	0.323
MA0083.1	MA0083.1	0.0072
MA0084.1	MA0084.1	0.282
MA0087.1	MA0087.1	0.459
MA0088.1	MA0088.1	0.0337
MA0090.1	MA0090.1	0.00499
MA0091.1	MA0091.1	0.545
MA0092.1	MA0092.1	0.704
MA0093.1	MA0093.1	0.0295
MA0099.2	MA0099.2	0.633
MA0100.1	MA0100.1	0.267
MA0101.1	MA0101.1	0.404
MA0102.2	MA0102.2	0.523
MA0103.1	MA0103.1	0.00887
MA0104.2	MA0104.2	7.68932e-4
MA0105.1	MA0105.1	0.394
MA0106.1	MA0106.1	0.504
MA0107.1	MA0107.1	0.161
MA0108.2	MA0108.2	0.0512
MA0111.1	MA0111.1	0.608
MA0112.2	MA0112.2	0.00493
MA0113.1	MA0113.1	0.779
MA0114.1	MA0114.1	0.0056
MA0115.1	MA0115.1	0.0477
MA0116.1	MA0116.1	0.167
MA0117.1	MA0117.1	0.83
MA0119.1	MA0119.1	0.625
MA0122.1	MA0122.1	0.86
MA0124.1	MA0124.1	0.984
MA0125.1	MA0125.1	0.524
MA0131.1	MA0131.1	0.54
MA0135.1	MA0135.1	0.832
MA0136.1	MA0136.1	0.0018
MA0137.2	MA0137.2	0.0394
MA0138.2	MA0138.2	0.0851
MA0139.1	MA0139.1	0.63
MA0140.1	MA0140.1	0.711
MA0141.1	MA0141.1	7.53259e-4
MA0142.1	MA0142.1	0.862
MA0143.1	MA0143.1	0.171
MA0144.1	MA0144.1	0.433
MA0145.1	MA0145.1	0.63
MA0146.1	MA0146.1	0.182
MA0147.1	MA0147.1	3.52608e-4
MA0148.1	MA0148.1	0.137
MA0149.1	MA0149.1	0.0269
MA0150.1	MA0150.1	0.633
MA0152.1	MA0152.1	0.678
MA0153.1	MA0153.1	0.0212
MA0154.1	MA0154.1	0.779
MA0155.1	MA0155.1	0.445
MA0156.1	MA0156.1	0.14
MA0157.1	MA0157.1	0.262
MA0159.1	MA0159.1	0.071
MA0160.1	MA0160.1	0.00166
MA0162.1	MA0162.1	0.109
MA0163.1	MA0163.1	0.00474
MA0164.1	MA0164.1	0.272
MA0258.1	MA0258.1	0.3
MA0259.1	MA0259.1	0.0404

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13498

Novel motif	Logo	P-value
1	1	0.0301
10	10	0.0523
100	100	0.0159
101	101	0.203
102	102	0.968
103	103	0.839
104	104	0.743
105	105	0.258
106	106	0.0473
107	107	0.18
108	108	0.645
109	109	9.27522e-4
11	11	0.57
110	110	0.213
111	111	0.359
112	112	0.281
113	113	0.00525
114	114	0.465
115	115	0.999
116	116	0.186
117	117	0.149
118	118	0.0502
119	119	0.305
12	12	0.702
120	120	0.0849
121	121	0.499
122	122	0.108
123	123	0.315
124	124	0.833
125	125	0.646
126	126	0.749
127	127	0.123
128	128	7.53661e-4
129	129	0.468
13	13	1.14885e-4
130	130	0.554
131	131	0.408
132	132	0.877
133	133	0.0979
134	134	0.805
135	135	0.159
136	136	0.0115
137	137	0.167
138	138	0.462
139	139	0.0911
14	14	0.555
140	140	0.461
141	141	0.21
142	142	0.674
143	143	0.249
144	144	0.455
145	145	0.336
146	146	0.863
147	147	0.474
148	148	0.415
149	149	0.455
15	15	0.358
150	150	0.726
151	151	0.76
152	152	0.671
153	153	0.796
154	154	0.332
155	155	0.617
156	156	0.105
157	157	0.0842
158	158	0.184
159	159	0.139
16	16	0.53
160	160	0.243
161	161	0.383
162	162	0.356
163	163	0.196
164	164	0.00924
165	165	0.298
166	166	0.0362
167	167	0.196
168	168	0.182
169	169	0.132
17	17	0.862
18	18	0.259
19	19	0.98
2	2	0.555
20	20	0.15
21	21	0.194
22	22	0.902
23	23	0.0216
24	24	0.427
25	25	0.124
26	26	0.645
27	27	0.867
28	28	0.871
29	29	0.012
3	3	0.801
30	30	0.447
31	31	0.678
32	32	0.167
33	33	0.111
34	34	0.237
35	35	0.876
36	36	0.0534
37	37	0.261
38	38	0.518
39	39	0.991
4	4	0.149
40	40	0.00541
41	41	0.166
42	42	0.785
43	43	0.77
44	44	0.0462
45	45	0.277
46	46	0.748
47	47	0.142
48	48	0.244
49	49	0.385
5	5	0.497
50	50	0.842
51	51	0.722
52	52	0.306
53	53	0.171
54	54	0.6
55	55	0.0531
56	56	0.902
57	57	0.408
58	58	0.912
59	59	0.995
6	6	0.491
60	60	0.528
61	61	0.0685
62	62	0.559
63	63	0.34
64	64	0.574
65	65	0.611
66	66	0.614
67	67	0.898
68	68	0.596
69	69	0.875
7	7	0.0168
70	70	0.874
71	71	0.0137
72	72	0.991
73	73	0.332
74	74	0.175
75	75	0.115
76	76	0.124
77	77	0.337
78	78	0.0986
79	79	0.649
8	8	0.0578
80	80	0.0802
81	81	0.281
82	82	0.247
83	83	0.84
84	84	0.484
85	85	0.0574
86	86	0.961
87	87	0.0044
88	88	0.902
89	89	0.645
9	9	0.606
90	90	0.0618
91	91	0.0245
92	92	0.116
93	93	0.204
94	94	0.763
95	95	0.0234
96	96	0.442
97	97	0.928
98	98	0.465
99	99	0.309

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13498

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011134 human Hep-2 cells treated with Streptococci strain JRS4 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005959
+|accession_numbers=CAGE;DRX007789;DRR008661;DRZ000086;DRZ001471;DRZ011436;DRZ012821
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:238592039..238592054,+!p4@LRRFIP1!1.57!36.10!LRRFIP1;;chr1:201979743..201979762,+!p1@ELF3!1.50!30.41!ELF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.93!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.46!27.86!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.41!62.40!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.85!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.71!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.88!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.89!PITX1;;chr12:52445218..52445237,+!p1@NR4A1!1.20!183.66!NR4A1;;chr6:126240442..126240459,+!p4@NCOA7!1.20!19.03!NCOA7;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.58!FOXQ1;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.93!NCOA7;;chr7:101917447..101917479,+!p4@CUX1!1.12!12.17!CUX1;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.27!BMP2;;chr18:55102598..55102623,+!p1@ONECUT2!1.10!11.58!ONECUT2;;chr5:170736243..170736279,+!p1@TLX3!1.09!11.38!TLX3;;chr12:54380036..54380091,+!p4@HOXC10!1.01!9.22!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.00!9.03!HOXC10;;chrX:131624056..131624069,-!p2@MBNL3!0.99!11.97!MBNL3;;chr17:46682321..46682362,-!p1@HOXB6!0.98!8.63!HOXB6;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.63!ONECUT2;;chr6:126240356..126240379,+!p7@NCOA7!0.96!10.01!NCOA7;;chr1:44513995..44514031,+!p1@KLF17!0.94!7.65!KLF17;;chr7:101917482..101917507,+!p6@CUX1!0.93!7.46!CUX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.26!TBX1;;chr16:29818199..29818216,+!p11@MAZ!0.91!11.97!MAZ;;chr3:69915385..69915438,+!p3@MITF!0.91!7.06!MITF;;chr11:34663913..34663945,+!p6@EHF!0.90!6.87!EHF;;chr9:100615499..100615519,+!p1@FOXE1!0.88!6.67!FOXE1;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.03!HOXB7;;chr12:54378923..54378966,+!p1@HOXC10!0.87!6.48!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.85!20.21!AHRR;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.08!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!0.84!13.74!NR4A3;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.24!FOXF2;;chr10:51572408..51572454,+!p3@NCOA4!0.82!35.32!NCOA4;;chr13:73633131..73633149,+!p1@KLF5!0.79!60.04!KLF5;;chrX:131623044..131623089,-!p1@MBNL3!0.79!23.15!MBNL3;;chr1:151804244..151804310,-!p1@RORC!0.79!5.10!RORC;;chr3:69915369..69915381,+!p4@MITF!0.79!5.10!MITF;;chr6:31126291..31126399,+!p1@TCF19!0.78!52.19!TCF19;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.38!SOX15;;chr12:72056800..72056834,+!p1@THAP2!0.78!7.06!THAP2;;chr17:17726907..17726958,-!p2@SREBF1!0.77!33.16!SREBF1;;chrX:107019163..107019179,-!p7@TSC22D3!0.77!5.69!TSC22D3;;chr5:170736216..170736238,+!p2@TLX3!0.77!4.91!TLX3;;chr1:8938709..8938720,-!p3@ENO1!0.76!256.85!ENO1;;chr12:54332608..54332636,+!p1@HOXC13!0.76!4.71!HOXC13;;chr10:104155659..104155676,+!p4@NFKB2!0.75!5.89!NFKB2;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.30!TFAP2A;;chr9:102584159..102584174,+!p2@NR4A3!0.74!8.63!NR4A3;;chr12:54379029..54379057,+!p2@HOXC10!0.74!4.51!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.25!MYBL2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.32!HOXC9;;chr12:2986275..2986363,-!p1@FOXM1!0.69!44.54!FOXM1;;chr12:3068544..3068597,+!p1@TEAD4!0.69!26.49!TEAD4;;chr12:72056773..72056796,+!p3@THAP2!0.69!5.30!THAP2;;chr12:54379477..54379498,+!p5@HOXC5!0.69!3.92!HOXC5;;chr17:46806067..46806097,-!p1@HOXB13!0.69!3.92!HOXB13;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.92!CUX1;;chr7:27224842..27224872,-!p1@HOXA11!0.69!3.92!HOXA11;;chr17:41277372..41277418,-!p1@BRCA1!0.68!15.31!BRCA1;;chrX:131622958..131622978,-!p3@MBNL3!0.68!4.91!MBNL3;;chrX:70503529..70503549,+!p2@NONO!0.67!22.37!NONO;;chr15:67418119..67418162,+!p5@SMAD3!0.67!4.12!SMAD3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.67!3.73!HOXC5;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.14!MYBL2;;chr2:157189180..157189290,-!p1@NR4A2!0.66!21.19!NR4A2;;chr1:45805872..45805900,+!p2@TOE1!0.66!9.61!TOE1;;chr10:28034739..28034756,-!p1@MKX!0.66!3.53!MKX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.66!3.53!SEBOX;;chr17:8027418..8027432,-!p1@HES7!0.66!3.53!HES7;;chr19:3574157..3574180,+!p4@HMG20B!0.66!3.53!HMG20B;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.53!SIX2;;chr12:80084737..80084763,-!p3@PAWR!0.65!14.72!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.30!HOXB7;;chr15:90294062..90294079,-!p2@MESP1!0.64!3.34!MESP1;;chrX:131623026..131623039,-!p5@MBNL3!0.64!3.34!MBNL3;;chr21:38071430..38071456,+!p1@SIM2!0.64!3.34!SIM2;;chr11:34664014..34664045,+!p4@EHF!0.64!3.34!EHF;;chr11:3400340..3400422,-!p1@ZNF195!0.63!61.61!ZNF195;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.82!PHB2;;chr22:42229210..42229229,+!p3@SREBF2!0.63!8.63!SREBF2;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.14!PAX9;;chr8:55370487..55370503,+!p1@SOX17!0.62!3.14!SOX17;;chrX:107018969..107019024,-!p6@TSC22D3!0.61!4.51!TSC22D3;;chr9:99180617..99180658,-!p1@ZNF367!0.60!7.46!ZNF367;;chr6:126240490..126240501,+!p11@NCOA7!0.60!2.94!NCOA7;;chr6:1389989..1390019,+!p2@FOXF2!0.60!2.94!FOXF2;;chr7:27224795..27224840,-!p2@HOXA11!0.60!2.94!HOXA11;;chr3:138665937..138665968,-!p1@FOXL2!0.60!2.94!FOXL2;;chr12:54379915..54379935,+!p8@HOXC10!0.60!2.94!HOXC1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@@ Line 38: / Line 41: @@
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@@ Line 46: / Line 60: @@
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 |sample_age=56
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=Hep-2
@@ Line 83: / Line 100: @@
 |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11895-125E5;search_select_hide=table117:FF:11895-125E5
 }}

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FF:11895-125E5: Difference between revisions

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Latest revision as of 18:27, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0