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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005095
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005095
|accession_numbers=CAGE;DRX008424;DRR009296;DRZ000721;DRZ002106;DRZ012071;DRZ013456
|accession_numbers_RNASeq=sRNA-Seq;DRX037011;DRR041377;DRZ007019
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!318.89!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.25!216.36!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.77!57.43!PITX1;;chr15:57511609..57511651,+!p2@TCF12!1.71!83.66!TCF12;;chr5:134369905..134369972,-!p1@PITX1!1.62!61.37!PITX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.58!183.97!CREB3L1;;chr15:42749722..42749739,-!p2@ZFP106!1.57!63.86!ZFP106;;chr5:92918919..92918942,+!p1@NR2F1!1.45!116.31!NR2F1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!42.88!CREB3L1;;chr5:92918956..92918969,+!p4@NR2F1!1.42!27.54!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!1.34!55.99!OSR1;;chr5:92919100..92919135,+!p3@NR2F1!1.34!25.18!NR2F1;;chr7:27224842..27224872,-!p1@HOXA11!1.30!19.01!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.28!18.10!HOXA11;;chr6:1389789..1389821,+!p1@FOXF2!1.26!23.73!FOXF2;;chr3:25470156..25470227,+!p2@RARB!1.24!16.26!RARB;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.47!HOXA3;;chr10:28034739..28034756,-!p1@MKX!1.22!15.47!MKX;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.81!TWIST2;;chr14:61116183..61116208,-!p1@SIX1!1.19!54.81!SIX1;;chr7:27239703..27239715,-!p1@HOXA13!1.18!14.16!HOXA13;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.75!TBX2;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.49!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!1.16!14.55!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.85!PRRX1;;chr14:33403881..33403924,+!p1@NPAS3!1.09!11.41!NPAS3;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.45!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!1.05!17.44!TWIST2;;chr5:92919068..92919082,+!p5@NR2F1!1.04!11.93!NR2F1;;chr10:63809106..63809127,+!p1@ARID5B!1.01!128.37!ARID5B;;chr3:141121847..141121868,+!p5@ZBTB38!1.00!13.90!ZBTB38;;chr3:128212033..128212051,-!p1@GATA2!1.00!9.05!GATA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.99!9.31!GLIS1;;chr3:128206762..128206781,-!p2@GATA2!0.98!55.20!GATA2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.33!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!0.97!10.88!PRRX2;;chr5:92919452..92919496,+!p11@NR2F1!0.97!8.39!NR2F1;;chr7:27239740..27239759,-!p2@HOXA13!0.97!8.39!HOXA13;;chr15:57511589..57511608,+!p4@TCF12!0.97!8.26!TCF12;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.75!TBX2;;chr8:99956662..99956684,+!p1@OSR2!0.94!12.06!OSR2;;chr11:46333934..46333963,+!p5@CREB3L1!0.94!7.74!CREB3L1;;chr7:28220198..28220269,-!p2@JAZF1!0.93!69.36!JAZF1;;chr10:63853436..63853442,+!p4@ARID5B!0.93!41.83!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.92!24.39!AHRR;;chr1:170633262..170633285,+!p3@PRRX1!0.92!8.39!PRRX1;;chr2:66662281..66662308,+!p1@MEIS1!0.90!24.78!MEIS1;;chr2:66662895..66662907,+!p3@MEIS1!0.90!8.79!MEIS1;;chr11:65687362..65687436,+!p3@DRAP1!0.89!32.52!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.36!ZFPM2;;chr3:25469724..25469773,+!p1@RARB!0.89!9.97!RARB;;chr9:132427883..132427951,+!p2@PRRX2!0.88!6.56!PRRX2;;chr19:45260775..45260838,+!p5@BCL3!0.86!8.26!BCL3;;chr11:46299443..46299459,+!p4@CREB3L1!0.86!6.16!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.16!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.84!39.86!HIC1;;chr9:77112244..77112262,+!p1@RORB!0.84!6.69!RORB;;chr15:67418177..67418204,+!p9@SMAD3!0.84!5.90!SMAD3;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.90!NFATC4;;chr2:46524537..46524553,+!p1@EPAS1!0.80!572.75!EPAS1;;chr5:92919312..92919334,+!p13@NR2F1!0.80!5.38!NR2F1;;chr5:50679228..50679288,+!p1@ISL1!0.80!5.24!ISL1;;chr10:63809013..63809041,+!p3@ARID5B!0.79!30.81!ARID5B;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.11!EBF3;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.42!TBX3;;chr15:37392724..37392757,-!p1@MEIS2!0.78!25.31!MEIS2;;chr9:128509663..128509715,+!p1@PBX3!0.78!18.62!PBX3;;chr18:19749541..19749557,+!p1@GATA6!0.78!17.18!GATA6;;chr3:12329397..12329433,+!p2@PPARG!0.78!12.06!PPARG;;chr8:72756267..72756296,-!p4@MSC!0.78!7.61!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.78!5.64!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.78!4.98!HOXA10;;chr5:92920456..92920488,+!p9@NR2F1!0.77!5.77!NR2F1;;chr17:59477197..59477212,+!p2@TBX2!0.76!8.52!TBX2;;chr8:72756667..72756736,-!p2@MSC!0.76!7.74!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.72!HOXA7;;chr2:46612891..46612907,+!p10@EPAS1!0.76!4.72!EPAS1;;chr2:66662396..66662407,+!p4@MEIS1!0.76!4.72!MEIS1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.59!SIX2;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.45!ZMAT3;;chr10:94449703..94449718,+!p1@HHEX!0.74!19.28!HHEX;;chr15:37390850..37390909,-!p3@MEIS2!0.74!9.31!MEIS2;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.69!NR2F2;;chr10:63809090..63809097,+!p7@ARID5B!0.74!6.56!ARID5B;;chr2:46602901..46602926,+!p7@EPAS1!0.74!6.29!EPAS1;;chr2:46602879..46602899,+!p8@EPAS1!0.74!5.64!EPAS1;;chr3:141150883..141150961,+!p6@ZBTB38!0.74!4.46!ZBTB38;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.74!4.46!SEBOX;;chr8:72756063..72756125,-!p1@MSC!0.73!9.44!MSC;;chr8:72756213..72756243,-!p5@MSC!0.73!5.77!MSC;;chr7:27205106..27205134,-!p2@HOXA9!0.73!4.33!HOXA9;;chr5:92918894..92918912,+!p2@NR2F1!0.72!15.47!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.26!NR2F2;;chr15:67418119..67418162,+!p5@SMAD3!0.72!4.85!SMAD3;;chr3:69788576..69788648,+!p1@MITF!0.71!24.39!MITF;;chr2:66662249..66662267,+!p2@MEIS1!0.70!17.18!MEIS1;;chr9:16870659..16870675,-!p2@BNC2!0.70!5.11!BNC2;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.06!ZFY;;chr15:67430351..67430366,+!p10@SMAD3!0.70!4.06!SMAD3;;chr19:44037546..44037594,+!p1@ZNF575!0.68!8.52!ZNF575;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.98!SMAD3;;chr2:66662510..66662521,+!p6@MEIS1!0.68!3.80!MEIS1;;chrY:21906594..21906622,-!p1@KDM5D!0.68!3.80!KDM5D;;chr11:65686802..65686818,+!p6@DRAP1!0.67!6.95!DRAP1;;chr2:85981222..85981259,+!p2@ATOH8!0.67!6.56!ATOH8;;chr15:67358163..67358192,+!p1@SMAD3!0.66!98.34!SMAD3;;chr10:63809077..63809089,+!p5@ARID5B!0.66!8.52!ARID5B;;chr2:85981107..85981120,+!p3@ATOH8!0.66!3.54!ATOH8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.65!40.91!GLIS2;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.26!ZNF503;;chr2:121493492..121493537,+!p2@GLI2!0.65!6.16!GLI2;;chr15:96874012..96874042,+!p2@NR2F2!0.64!35.67!NR2F2;;chr9:35732647..35732678,+!p2@CREB3!0.64!21.77!CREB3;;chr9:16870710..16870763,-!p1@BNC2!0.64!6.43!BNC2;;chr9:128510454..128510469,+!p3@PBX3!0.64!4.59!PBX3;;chr16:51185172..51185197,-!p1@SALL1!0.64!3.41!SALL1;;chr11:46333979..46333991,+!p7@CREB3L1!0.64!3.41!CREB3L1;;chr6:1389989..1390019,+!p2@FOXF2!0.64!3.41!FOXF2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!275.10!TAX1BP3;;chr15:96874145..96874166,+!p7@NR2F2!0.63!6.95!NR2F2;;chr2:185463247..185463263,+!p1@ZNF804A!0.63!6.29!ZNF804A;;chr3:25469815..25469866,+!p3@RARB!0.63!3.28!RARB;;chr14:29235961..29236008,+!p1@FOXG1!0.63!3.28!FOXG1;;chr7:42276787..42276815,-!p1@GLI3!0.62!9.57!GLI3;;chr2:121493425..121493474,+!p1@GLI2!0.62!7.74!GLI2;;chr13:37494365..37494381,-!p1@SMAD9!0.62!6.03!SMAD9;;chr12:24715376..24715432,-!p1@SOX5!0.62!4.20!SOX5;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.15!ZNF668;;chr1:170632250..170632277,+!p7@PRRX1!0.62!3.15!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.62!3.15!PRRX1;;chr15:67357924..67357952,+!p2@SMAD3!0.61!24.00!SMAD3;;chr7:19157248..19157268,-!p1@TWIST1!0.61!9.70!TWIST1;;chrX:66763856..66763896,+!p1@AR!0.61!4.72!AR;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.33!CREB5;;chr15:37392616..37392638,-!p2@MEIS2!0.60!10.88!MEIS2;;chr10:31610110..31610159,+!p2@ZEB1!0.60!3.02!ZEB1;;chr7:101917407..101917443,+!p3@CUX1!0.60!3.02!CUX1;;chr22:41763452..41763466,+!p2@TEF!0.60!3.02!TEF;;chr2:176969228..176969260,+!p1@HOXD11!0.60!3.02!HOXD11;;chr7:150974206..150974255,-!p1@SMARCD3!0.59!21.50!SMARCD3;;chr12:54772960..54773015,-!p3@ZNF385A!0.59!16.65!ZNF385A;;chr1:158969752..158969780,+!p6@IFI16!0.59!5.64!IFI16;;chr18:19749386..19749404,+!p2@GATA6!0.59!4.46!GATA6;;chr8:72756637..72756664,-!p3@MSC!0.59!3.41!MSC;;chr11:46299186..46299195,+!p3@CREB3L1!0.59!3.28!CREB3L1;;chr11:46333883..46333900,+!p8@CREB3L1!0.59!2.88!CREB3L1;;chr3:25470062..25470084,+!p4@RARB!0.59!2.88!RARB;;chr19:13106214..13106382,+!p1@NFIX!0.58!79.99!NFIX;;chr10:63809134..63809145,+!p6@ARID5B!0.58!7.34!ARID5B;;chr15:37390482..37390572,-!p7@MEIS2!0.58!4.06!MEIS2;;chrX:66763815..66763854,+!p2@AR!0.58!3.93!AR;;chr10:63851319..63851332,+!p11@ARID5B!0.58!3.15!ARID5B;;chr11:65687158..65687216,+!p4@DRAP1!0.57!19.01!DRAP1;;chr1:47903709..47903764,+!p1@BC169308!0.57!3.15!FOXD2;;chr10:63816978..63816993,+!p12@ARID5B!0.57!2.75!ARID5B;;chr6:1610293..1610310,+!p1@FOXC1!0.56!4.85!FOXC1;;chr11:706938..707008,-!p3@DEAF1!0.56!3.54!DEAF1;;chr7:1577899..1577943,+!p3@MAFK!0.56!2.62!MAFK;;chr2:176994408..176994492,+!p1@HOXD8!0.56!2.62!HOXD8;;chr3:141121871..141121885,+!p13@ZBTB38!0.56!2.62!ZBTB38;;chr8:48650715..48650735,-!p1@CEBPD!0.55!418.02!CEBPD;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.61!TWIST1;;chr17:7492684..7492778,-!p2@SOX15!0.55!6.16!SOX15;;chr20:50721803..50721857,-!p2@ZFP64!0.55!4.46!ZFP64;;chr15:37392703..37392717,-!p8@MEIS2!0.55!3.93!MEIS2;;chr6:34204921..34204939,+!p3@HMGA1!0.54!94.93!HMGA1;;chr2:178128149..178128198,-!p2@NFE2L2!0.54!16.52!NFE2L2;;chr11:12696002..12696022,+!p2@TEAD1!0.54!7.21!TEAD1;;chr15:96869114..96869160,+!p11@NR2F2!0.54!3.67!NR2F2;;chr19:13136241..13136258,+!p7@NFIX!0.54!3.54!NFIX;;chr11:65687222..65687240,+!p7@DRAP1!0.54!3.41!DRAP1;;chr2:19558327..19558334,-!p2@OSR1!0.54!2.49!OSR1;;chr3:141121820..141121838,+!p9@ZBTB38!0.54!2.49!ZBTB38;;chr15:96873984..96873999,+!p3@NR2F2!0.53!22.03!NR2F2;;chr15:96869292..96869320,+!p15@NR2F2!0.53!3.80!NR2F2;;chr22:41735880..41735903,+!p5@ZC3H7B!0.53!2.88!ZC3H7B;;chr14:61116168..61116180,-!p2@SIX1!0.53!2.88!SIX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.53!2.36!PKNOX2;;chr2:66662697..66662711,+!p8@MEIS1!0.53!2.36!MEIS1;;chr6:1389824..1389840,+!p3@FOXF2!0.53!2.36!FOXF2;;chr1:8483878..8483907,-!p4@RERE!0.52!11.15!RERE;;chr12:27485762..27485776,+!p3@ARNTL2!0.52!7.47!ARNTL2;;chr16:8962202..8962222,-!p3@CARHSP1!0.52!4.72!CARHSP1;;chr11:65687243..65687276,+!p8@DRAP1!0.52!3.41!DRAP1;;chr6:32095523..32095564,-!p2@ATF6B!0.52!3.41!ATF6B;;chr15:37390374..37390422,-!p9@MEIS2!0.52!3.02!MEIS2;;chr8:77593474..77593612,+!p1@ZFHX4!0.51!11.80!ZFHX4;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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor3.CNhs12015.11405-118E1.hg38.nobarcode.ctss.bed.gz
|id=FF:11405-118E1
|id=FF:11405-118E1
|is_a=EFO:0002091;;FF:0000277
|is_a=EFO:0002091;;FF:0000277
|is_obsolete=
|is_obsolete=
|library_id=CNhs12015
|library_id_phase_based=2:CNhs12015
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11405
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CGATGT.11405
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11405
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CGATGT.11405
|name=Prostate Stromal Cells, donor3
|name=Prostate Stromal Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12015,LSID837,release011,COMPLETED
|profile_hcage=CNhs12015,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|profile_srnaseq=SRhi10003,,,
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Line 59: Line 80:
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:2.46756241415;ALX4:2.00947148138;ESR1:1.83562720736;UFEwm:1.78053064485;RXR{A,B,G}:1.69061228304;PAX1,9:1.62001365091;HMX1:1.51745069345;ZNF238:1.46635862485;GZF1:1.44839182873;TFAP4:1.37130579247;KLF4:1.33424259823;MYBL2:1.28333866928;EBF1:1.20095796572;HSF1,2:1.17058967035;PATZ1:1.10731564368;FOXL1:1.05216944712;TP53:1.02423859431;NKX2-2,8:0.999036799841;ZBTB6:0.991543461557;ZNF423:0.967375848684;TEAD1:0.950772132934;TFCP2:0.942399415555;TOPORS:0.941388845543;SPZ1:0.884346666418;GLI1..3:0.81598609882;TEF:0.81307559373;NKX3-1:0.798924617252;TFAP2{A,C}:0.797743644878;EVI1:0.78782539858;ATF6:0.777191454709;ZIC1..3:0.755359379407;TLX1..3_NFIC{dimer}:0.745498178154;SRF:0.735222228604;NR6A1:0.731745314396;MAZ:0.724263133305;GFI1B:0.673810136696;TFAP2B:0.644662361109;NFIX:0.643320894517;MTE{core}:0.604517361361;GTF2I:0.603109737951;GTF2A1,2:0.602561228477;MYFfamily:0.595361305273;NFE2L1:0.593053738554;XBP1:0.574368133286;LHX3,4:0.567661377335;YY1:0.557878179202;AIRE:0.548390902177;bHLH_family:0.540475312661;EGR1..3:0.526316817687;NR3C1:0.524250059556;PPARG:0.51750175489;HIC1:0.511697540861;XCPE1{core}:0.505794320652;HES1:0.461766770478;ZNF384:0.410247842362;GATA4:0.397701908541;SREBF1,2:0.397661645838;EN1,2:0.395046816259;HOX{A4,D4}:0.388782766125;IKZF1:0.368668422243;TBP:0.352740833376;NFE2L2:0.341648035455;PAX5:0.340743947622;RXRA_VDR{dimer}:0.331465150106;HMGA1,2:0.330066882313;RREB1:0.314232266326;NHLH1,2:0.308814921308;HNF4A_NR2F1,2:0.307717910495;TBX4,5:0.287290701556;SP1:0.285247309225;HLF:0.279493044598;MZF1:0.258291844827;IRF1,2:0.236282978962;MAFB:0.185305446511;STAT5{A,B}:0.180772061369;NANOG{mouse}:0.160960229487;NR5A1,2:0.157958174571;PRDM1:0.155116770633;NR1H4:0.138046288984;ARID5B:0.136073800928;SMAD1..7,9:0.0952291387282;ESRRA:0.090449640693;FOXO1,3,4:0.088974989206;REST:0.0835391572622;MED-1{core}:0.0497824357351;CDC5L:0.0303651230206;ONECUT1,2:0.0289554760439;NFATC1..3:0.000925890139978;FOX{I1,J2}:-0.012194986561;NFE2:-0.0387435245823;HAND1,2:-0.0434489284678;PAX4:-0.0439635617528;SOX5:-0.0658901089716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0700237186106;STAT2,4,6:-0.0721265158146;LMO2:-0.0802119333108;HNF1A:-0.113502807371;ZNF148:-0.114129065016;BACH2:-0.137429722585;HOX{A5,B5}:-0.140120910625;FOXQ1:-0.147988079911;ZFP161:-0.167797357298;MTF1:-0.169270773054;DBP:-0.171912753251;NKX3-2:-0.194207938122;FOXM1:-0.220555486704;ELK1,4_GABP{A,B1}:-0.225925835639;NFKB1_REL_RELA:-0.231941562626;RFX1:-0.242879392558;NKX6-1,2:-0.245046346623;FOX{D1,D2}:-0.248036666993;GFI1:-0.258743337465;GCM1,2:-0.279238345731;HOXA9_MEIS1:-0.282303726447;DMAP1_NCOR{1,2}_SMARC:-0.282989860818;CRX:-0.283640098105;LEF1_TCF7_TCF7L1,2:-0.291131646732;NRF1:-0.317583352432;POU3F1..4:-0.341808303856;IRF7:-0.347557919206;FOXD3:-0.347826539449;SOX17:-0.354747428217;CEBPA,B_DDIT3:-0.361644324866;FOS_FOS{B,L1}_JUN{B,D}:-0.367002490762;HIF1A:-0.370538164072;T:-0.374952806043;PRRX1,2:-0.3776674243;MEF2{A,B,C,D}:-0.380142856917;ZNF143:-0.404203473324;AR:-0.407829656985;FOXP3:-0.439495843862;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.462143729137;BREu{core}:-0.476083107324;MYB:-0.481047822047;FOSL2:-0.483960063097;BPTF:-0.537116410404;FOXP1:-0.553390562913;HOX{A6,A7,B6,B7}:-0.561117643801;NFIL3:-0.564079841368;AHR_ARNT_ARNT2:-0.590619981365;RFX2..5_RFXANK_RFXAP:-0.594444530655;NKX2-1,4:-0.59669046373;RUNX1..3:-0.597196348219;FOX{F1,F2,J1}:-0.597475479008;TLX2:-0.606052397775;TFDP1:-0.606345834444;ATF5_CREB3:-0.610486864668;ETS1,2:-0.617002834565;MYOD1:-0.620431038094;POU1F1:-0.622321039259;TGIF1:-0.628441184351;STAT1,3:-0.633182476324;ATF2:-0.63939663061;CDX1,2,4:-0.643974864946;ZBTB16:-0.667071921104;JUN:-0.676123978511;FOXN1:-0.728273443306;SPIB:-0.732065597638;FOXA2:-0.742479313405;POU6F1:-0.748361213093;PITX1..3:-0.755919680204;SPI1:-0.787575921294;SNAI1..3:-0.794061043307;PAX6:-0.797965729564;SOX2:-0.806180415943;PAX3,7:-0.813396945199;ATF4:-0.828770182031;RBPJ:-0.844622912835;ELF1,2,4:-0.856559176417;RORA:-0.918943220155;EP300:-0.922197705191;GATA6:-0.926581454027;PAX8:-0.931150855483;CREB1:-0.953220783731;E2F1..5:-0.956256822992;ADNP_IRX_SIX_ZHX:-0.959474473655;POU5F1:-0.959580336253;OCT4_SOX2{dimer}:-0.960931391751;ZEB1:-1.02070593115;ALX1:-1.03339683038;NKX2-3_NKX2-5:-1.05761628176;CUX2:-1.06193946359;PAX2:-1.0647163251;VSX1,2:-1.08254397844;PBX1:-1.13081333161;PDX1:-1.16169574074;NFY{A,B,C}:-1.26800116689;SOX{8,9,10}:-1.27282432104;IKZF2:-1.33479414151;POU2F1..3:-1.49515012215;HBP1_HMGB_SSRP1_UBTF:-1.50952802769;NANOG:-1.51168787439
|top_motifs=TAL1_TCF{3,4,12}:2.46756241415;ALX4:2.00947148138;ESR1:1.83562720736;UFEwm:1.78053064485;RXR{A,B,G}:1.69061228304;PAX1,9:1.62001365091;HMX1:1.51745069345;ZNF238:1.46635862485;GZF1:1.44839182873;TFAP4:1.37130579247;KLF4:1.33424259823;MYBL2:1.28333866928;EBF1:1.20095796572;HSF1,2:1.17058967035;PATZ1:1.10731564368;FOXL1:1.05216944712;TP53:1.02423859431;NKX2-2,8:0.999036799841;ZBTB6:0.991543461557;ZNF423:0.967375848684;TEAD1:0.950772132934;TFCP2:0.942399415555;TOPORS:0.941388845543;SPZ1:0.884346666418;GLI1..3:0.81598609882;TEF:0.81307559373;NKX3-1:0.798924617252;TFAP2{A,C}:0.797743644878;EVI1:0.78782539858;ATF6:0.777191454709;ZIC1..3:0.755359379407;TLX1..3_NFIC{dimer}:0.745498178154;SRF:0.735222228604;NR6A1:0.731745314396;MAZ:0.724263133305;GFI1B:0.673810136696;TFAP2B:0.644662361109;NFIX:0.643320894517;MTE{core}:0.604517361361;GTF2I:0.603109737951;GTF2A1,2:0.602561228477;MYFfamily:0.595361305273;NFE2L1:0.593053738554;XBP1:0.574368133286;LHX3,4:0.567661377335;YY1:0.557878179202;AIRE:0.548390902177;bHLH_family:0.540475312661;EGR1..3:0.526316817687;NR3C1:0.524250059556;PPARG:0.51750175489;HIC1:0.511697540861;XCPE1{core}:0.505794320652;HES1:0.461766770478;ZNF384:0.410247842362;GATA4:0.397701908541;SREBF1,2:0.397661645838;EN1,2:0.395046816259;HOX{A4,D4}:0.388782766125;IKZF1:0.368668422243;TBP:0.352740833376;NFE2L2:0.341648035455;PAX5:0.340743947622;RXRA_VDR{dimer}:0.331465150106;HMGA1,2:0.330066882313;RREB1:0.314232266326;NHLH1,2:0.308814921308;HNF4A_NR2F1,2:0.307717910495;TBX4,5:0.287290701556;SP1:0.285247309225;HLF:0.279493044598;MZF1:0.258291844827;IRF1,2:0.236282978962;MAFB:0.185305446511;STAT5{A,B}:0.180772061369;NANOG{mouse}:0.160960229487;NR5A1,2:0.157958174571;PRDM1:0.155116770633;NR1H4:0.138046288984;ARID5B:0.136073800928;SMAD1..7,9:0.0952291387282;ESRRA:0.090449640693;FOXO1,3,4:0.088974989206;REST:0.0835391572622;MED-1{core}:0.0497824357351;CDC5L:0.0303651230206;ONECUT1,2:0.0289554760439;NFATC1..3:0.000925890139978;FOX{I1,J2}:-0.012194986561;NFE2:-0.0387435245823;HAND1,2:-0.0434489284678;PAX4:-0.0439635617528;SOX5:-0.0658901089716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0700237186106;STAT2,4,6:-0.0721265158146;LMO2:-0.0802119333108;HNF1A:-0.113502807371;ZNF148:-0.114129065016;BACH2:-0.137429722585;HOX{A5,B5}:-0.140120910625;FOXQ1:-0.147988079911;ZFP161:-0.167797357298;MTF1:-0.169270773054;DBP:-0.171912753251;NKX3-2:-0.194207938122;FOXM1:-0.220555486704;ELK1,4_GABP{A,B1}:-0.225925835639;NFKB1_REL_RELA:-0.231941562626;RFX1:-0.242879392558;NKX6-1,2:-0.245046346623;FOX{D1,D2}:-0.248036666993;GFI1:-0.258743337465;GCM1,2:-0.279238345731;HOXA9_MEIS1:-0.282303726447;DMAP1_NCOR{1,2}_SMARC:-0.282989860818;CRX:-0.283640098105;LEF1_TCF7_TCF7L1,2:-0.291131646732;NRF1:-0.317583352432;POU3F1..4:-0.341808303856;IRF7:-0.347557919206;FOXD3:-0.347826539449;SOX17:-0.354747428217;CEBPA,B_DDIT3:-0.361644324866;FOS_FOS{B,L1}_JUN{B,D}:-0.367002490762;HIF1A:-0.370538164072;T:-0.374952806043;PRRX1,2:-0.3776674243;MEF2{A,B,C,D}:-0.380142856917;ZNF143:-0.404203473324;AR:-0.407829656985;FOXP3:-0.439495843862;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.462143729137;BREu{core}:-0.476083107324;MYB:-0.481047822047;FOSL2:-0.483960063097;BPTF:-0.537116410404;FOXP1:-0.553390562913;HOX{A6,A7,B6,B7}:-0.561117643801;NFIL3:-0.564079841368;AHR_ARNT_ARNT2:-0.590619981365;RFX2..5_RFXANK_RFXAP:-0.594444530655;NKX2-1,4:-0.59669046373;RUNX1..3:-0.597196348219;FOX{F1,F2,J1}:-0.597475479008;TLX2:-0.606052397775;TFDP1:-0.606345834444;ATF5_CREB3:-0.610486864668;ETS1,2:-0.617002834565;MYOD1:-0.620431038094;POU1F1:-0.622321039259;TGIF1:-0.628441184351;STAT1,3:-0.633182476324;ATF2:-0.63939663061;CDX1,2,4:-0.643974864946;ZBTB16:-0.667071921104;JUN:-0.676123978511;FOXN1:-0.728273443306;SPIB:-0.732065597638;FOXA2:-0.742479313405;POU6F1:-0.748361213093;PITX1..3:-0.755919680204;SPI1:-0.787575921294;SNAI1..3:-0.794061043307;PAX6:-0.797965729564;SOX2:-0.806180415943;PAX3,7:-0.813396945199;ATF4:-0.828770182031;RBPJ:-0.844622912835;ELF1,2,4:-0.856559176417;RORA:-0.918943220155;EP300:-0.922197705191;GATA6:-0.926581454027;PAX8:-0.931150855483;CREB1:-0.953220783731;E2F1..5:-0.956256822992;ADNP_IRX_SIX_ZHX:-0.959474473655;POU5F1:-0.959580336253;OCT4_SOX2{dimer}:-0.960931391751;ZEB1:-1.02070593115;ALX1:-1.03339683038;NKX2-3_NKX2-5:-1.05761628176;CUX2:-1.06193946359;PAX2:-1.0647163251;VSX1,2:-1.08254397844;PBX1:-1.13081333161;PDX1:-1.16169574074;NFY{A,B,C}:-1.26800116689;SOX{8,9,10}:-1.27282432104;IKZF2:-1.33479414151;POU2F1..3:-1.49515012215;HBP1_HMGB_SSRP1_UBTF:-1.50952802769;NANOG:-1.51168787439
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11405-118E1;search_select_hide=table117:FF:11405-118E1
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Prostate Stromal Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12015
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage40 years old adult
sexmale
age40
cell typeprostatic stromal cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005095
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12015 CAGE DRX008424 DRR009296
Accession ID Hg19

Library idBAMCTSS
CNhs12015 DRZ000721 DRZ002106
Accession ID Hg38

Library idBAMCTSS
CNhs12015 DRZ012071 DRZ013456
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005095
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.CGATGT sRNA-Seq DRX037011 DRR041377
Accession ID Hg19

Library idBAMCTSS
SRhi10003.CGATGT DRZ007019


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0713
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.283
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.183
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.143
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00175
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0535
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.767
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0798
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.357
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0535
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0114
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0393
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.488
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0214
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.311
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.144
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.456
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.144
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.101
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.101
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.376
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.693
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.144
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.631
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.133
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.411
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12015

Jaspar motifP-value
MA0002.20.0325
MA0003.10.376
MA0004.10.409
MA0006.10.11
MA0007.10.671
MA0009.10.579
MA0014.10.316
MA0017.10.708
MA0018.28.99477e-7
MA0019.10.865
MA0024.11.80592e-5
MA0025.10.00816
MA0027.10.46
MA0028.10.00481
MA0029.10.79
MA0030.10.309
MA0031.10.201
MA0035.20.264
MA0038.10.0201
MA0039.20.0164
MA0040.10.128
MA0041.10.513
MA0042.10.535
MA0043.10.00217
MA0046.10.401
MA0047.20.212
MA0048.10.341
MA0050.10.743
MA0051.10.467
MA0052.10.0402
MA0055.10.587
MA0057.10.118
MA0058.10.296
MA0059.10.314
MA0060.11.41646e-12
MA0061.10.401
MA0062.22.7026e-8
MA0065.20.954
MA0066.10.591
MA0067.10.0237
MA0068.10.507
MA0069.10.0654
MA0070.10.775
MA0071.10.438
MA0072.10.467
MA0073.10.784
MA0074.10.0236
MA0076.10.0011
MA0077.10.362
MA0078.10.824
MA0079.20.34
MA0080.21.89086e-9
MA0081.10.00291
MA0083.10.0423
MA0084.10.369
MA0087.10.36
MA0088.10.826
MA0090.10.0111
MA0091.10.00132
MA0092.10.875
MA0093.10.366
MA0099.25.14826e-6
MA0100.10.039
MA0101.10.0402
MA0102.20.832
MA0103.10.073
MA0104.20.0235
MA0105.10.538
MA0106.10.0468
MA0107.10.0573
MA0108.20.894
MA0111.10.321
MA0112.20.0873
MA0113.10.735
MA0114.10.833
MA0115.10.16
MA0116.10.393
MA0117.10.185
MA0119.10.472
MA0122.10.227
MA0124.10.185
MA0125.10.64
MA0131.10.162
MA0135.10.373
MA0136.19.54426e-15
MA0137.20.342
MA0138.20.446
MA0139.10.821
MA0140.10.282
MA0141.10.544
MA0142.10.0217
MA0143.10.314
MA0144.10.967
MA0145.10.412
MA0146.10.0996
MA0147.10.0179
MA0148.10.28
MA0149.10.257
MA0150.10.0202
MA0152.10.454
MA0153.10.128
MA0154.10.942
MA0155.10.0668
MA0156.18.89612e-12
MA0157.10.323
MA0159.10.98
MA0160.10.476
MA0162.10.17
MA0163.10.192
MA0164.10.559
MA0258.10.562
MA0259.10.0895



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12015

Novel motifP-value
10.35
100.464
1000.294
1010.496
1020.274
1030.772
1040.841
1050.151
1060.409
1070.0655
1080.0804
1090.795
110.928
1100.687
1110.643
1120.457
1130.661
1140.673
1150.00543
1160.0788
1170.697
1180.675
1190.56
120.44
1200.19
1210.249
1220.0227
1230.0214
1240.396
1250.784
1260.909
1270.859
1280.238
1290.189
130.493
1300.909
1310.274
1320.133
1330.453
1340.432
1350.625
1360.162
1370.0985
1380.39
1390.544
140.364
1400.99
1410.12
1420.645
1430.925
1440.206
1450.826
1460.691
1470.337
1480.534
1490.0657
150.22
1500.402
1510.505
1520.00774
1530.307
1540.0985
1550.0175
1560.476
1570.92
1580.0248
1590.613
160.136
1600.873
1610.798
1620.215
1630.796
1640.0502
1650.414
1660.0458
1670.388
1680.845
1690.0693
170.862
180.576
190.0153
20.136
200.48
210.32
220.155
230.563
240.579
250.0557
260.805
270.49
280.0894
290.568
30.862
300.468
310.391
326.72895e-12
330.518
340.574
350.723
360.0257
370.0922
380.315
390.403
40.151
400.614
410.0789
420.268
430.73
440.0441
450.727
460.815
470.6
480.368
490.242
50.395
500.524
510.634
520.573
530.217
540.57
550.168
560.762
570.42
580.147
590.162
60.633
600.745
610.693
620.399
630.43
640.482
650.551
660.0927
670.78
680.818
690.448
70.0592
700.796
710.996
720.569
730.00895
740.331
750.872
760.999
770.0961
780.189
791.93619e-4
80.314
800.149
810.807
820.272
830.0416
840.726
850.186
860.427
870.108
880.488
890.132
90.812
900.478
910.85
920.644
930.193
940.979
950.3
960.473
970.862
980.313
990.00617



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12015


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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