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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004900
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004900
|accession_numbers=CAGE;DRX008448;DRR009320;DRZ000745;DRZ002130;DRZ012095;DRZ013480
|accession_numbers_RNASeq=sRNA-Seq;DRX037009;DRR041375;DRZ007017
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002419,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0002365,UBERON:0007771,UBERON:0002530,UBERON:0003297,UBERON:0001821,UBERON:0010317,UBERON:0003487,UBERON:0001820,UBERON:0002330,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002419,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0002365,UBERON:0007771,UBERON:0002530,UBERON:0003297,UBERON:0001821,UBERON:0010317,UBERON:0003487,UBERON:0001820,UBERON:0002330,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000150,CL:0000362,CL:0000154,CL:0002159,CL:0000255,CL:0002077,CL:0000317,CL:0000622,CL:1000448,CL:0002308,CL:0002140
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000150,CL:0000362,CL:0000154,CL:0002159,CL:0000255,CL:0002077,CL:0000317,CL:0000622,CL:1000448,CL:0002308,CL:0002140
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.56!363.38!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.16!144.96!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.11!141.06!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.96!134.56!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.92!91.66!ZNF385A;;chr1:209979411..209979433,-!p2@IRF6!1.86!72.16!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.81!76.71!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.81!63.71!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.78!59.16!HES2;;chr15:83953397..83953425,-!p1@BNC1!1.77!65.66!BNC1;;chr17:80797886..80797906,-!p1@ZNF750!1.71!50.05!ZNF750;;chr11:34642612..34642646,+!p1@EHF!1.67!46.15!EHF;;chr17:7492684..7492778,-!p2@SOX15!1.63!85.16!SOX15;;chr5:2751762..2751784,-!p1@IRX2!1.61!39.65!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.58!60.46!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.48!29.25!CERS3;;chr6:10415484..10415508,-!p3@TFAP2A!1.44!26.65!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.43!26.00!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.37!194.37!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.32!55.26!EPAS1;;chr5:2751785..2751808,-!p2@IRX2!1.28!18.20!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.90!GRHL2;;chr3:189507523..189507535,+!p5@TP63!1.20!14.95!TP63;;chr3:189507460..189507471,+!p3@TP63!1.17!13.65!TP63;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.65!SOX7;;chr8:49833948..49833973,-!p2@SNAI2!1.16!84.51!SNAI2;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.00!IRX1;;chr13:73633131..73633149,+!p1@KLF5!1.14!134.56!KLF5;;chr12:66218255..66218304,+!p3@HMGA2!1.13!33.80!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.13!12.35!HOPX;;chr20:55204351..55204377,+!p1@TFAP2C!1.12!15.60!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!1.11!14.30!GATA3;;chr17:7492504..7492520,-!p3@SOX15!1.10!11.70!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.06!217.12!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!1.06!12.35!GATA3;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.40!TBX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.06!10.40!TFCP2L1;;chr7:27135591..27135658,-!p1@HOXA1!1.04!19.50!HOXA1;;chr10:8096772..8096787,+!p2@GATA3!1.04!11.70!GATA3;;chr8:128748308..128748324,+!p2@MYC!1.03!275.63!MYC;;chr17:26833339..26833378,+!p1@FOXN1!1.03!9.75!FOXN1;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.05!FOSL1;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.55!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.01!14.30!PITX1;;chr11:65554528..65554546,+!p1@OVOL1!1.00!9.10!OVOL1;;chr17:48072574..48072597,-!p1@DLX3!1.00!9.10!DLX3;;chr8:128747661..128747703,+!p6@MYC!0.98!11.70!MYC;;chr5:3595934..3595957,+!p2@IRX1!0.98!8.45!IRX1;;chr5:1887052..1887065,-!p2@IRX4!0.94!7.80!IRX4;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.80!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.94!7.80!TFAP2A;;chr7:96654133..96654150,-!p1@DLX5!0.94!7.80!DLX5;;chr1:10856665..10856683,-!p4@CASZ1!0.94!7.80!CASZ1;;chr1:24645832..24645853,+!p1@GRHL3!0.94!7.80!GRHL3;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.80!KDM5D;;chr17:41623009..41623053,-!p4@ETV4!0.93!12.35!ETV4;;chr1:170632285..170632309,+!p1@PRRX1!0.92!8.45!PRRX1;;chr1:24646263..24646277,+!p4@GRHL3!0.91!7.15!GRHL3;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.10!CENPT;;chr17:7492979..7492991,-!p5@SOX15!0.88!6.50!SOX15;;chr11:129245526..129245553,+!p1@BARX2!0.88!6.50!BARX2;;chr12:54332608..54332636,+!p1@HOXC13!0.88!6.50!HOXC13;;chr12:54378923..54378966,+!p1@HOXC10!0.88!6.50!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.88!6.50!HOXC4;;chr1:209979375..209979386,-!p4@IRF6!0.88!6.50!IRF6;;chr1:209979449..209979460,-!p3@IRF6!0.88!6.50!IRF6;;chr2:63277948..63277974,+!p1@OTX1!0.88!6.50!OTX1;;chr3:111314230..111314241,-!p2@ZBED2!0.88!6.50!ZBED2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.87!83.86!ZC3H12A;;chr14:21566731..21566836,-!p1@ZNF219!0.86!70.21!ZNF219;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17.55!POU2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.75!ZFP64;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.15!KLF5;;chr12:48298765..48298783,-!p2@VDR!0.84!13.00!VDR;;chr15:83953373..83953386,-!p2@BNC1!0.84!5.85!BNC1;;chr5:1887070..1887114,-!p1@IRX4!0.84!5.85!IRX4;;chr6:28321971..28321995,-!p1@ZNF323!0.84!5.85!ZNF323;;chr7:27205106..27205134,-!p2@HOXA9!0.84!5.85!HOXA9;;chr8:128747709..128747723,+!p20@MYC!0.84!5.85!MYC;;chr1:24645921..24645973,+!p2@GRHL3!0.84!5.85!GRHL3;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.85!EPAS1;;chr2:208030647..208030689,-!p1@KLF7!0.81!48.75!KLF7;;chr17:70117153..70117174,+!p1@SOX9!0.80!59.81!SOX9;;chr16:54320158..54320200,-!p5@IRX3!0.80!7.80!IRX3;;chr2:60778035..60778060,-!p4@BCL11A!0.80!6.50!BCL11A;;chr12:54447599..54447630,+!p3@HOXC4!0.79!6.50!HOXC4;;chr4:188916918..188916942,+!p1@ZFP42!0.79!5.20!ZFP42;;chr16:86612320..86612394,+!p1@FOXL1!0.79!5.20!FOXL1;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr6:10419824..10419840,-!p9@TFAP2A!0.79!5.20!TFAP2A;;chr7:96654026..96654061,-!p2@DLX5!0.79!5.20!DLX5;;chr9:100615499..100615519,+!p1@FOXE1!0.79!5.20!FOXE1;;chr8:128750654..128750793,+!p3@MYC!0.78!22.10!MYC;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.10!DRAP1;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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000154;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001821;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000221
|ffid_belonging_in_development=CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor2.CNhs11951.11301-117B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor2.CNhs11951.11301-117B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor2.CNhs11951.11301-117B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor2.CNhs11951.11301-117B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor2.CNhs11951.11301-117B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11301-117B5
|id=FF:11301-117B5
|is_a=EFO:0002091;;FF:0000160
|is_a=EFO:0002091;;FF:0000160
|is_obsolete=
|is_obsolete=
|library_id=CNhs11951
|library_id_phase_based=2:CNhs11951
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11301
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GAGTGG.11301
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11301
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GAGTGG.11301
|name=Sebocyte, donor2
|name=Sebocyte, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11951,LSID836,release011,COMPLETED
|profile_hcage=CNhs11951,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
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Line 61: Line 82:
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=TP53:2.65954914017;TBX4,5:2.22056749716;ZEB1:1.58032397239;ZNF238:1.57738753508;TFCP2:1.53904631713;SNAI1..3:1.43390394515;VSX1,2:1.4318836445;TBP:1.34716466373;ONECUT1,2:1.27145324055;ZNF148:1.23154191187;ZNF423:1.2221168047;PAX4:1.06306860775;PAX1,9:1.0579165674;FOXM1:0.965895719712;SMAD1..7,9:0.960715738837;TEAD1:0.941936836611;MYOD1:0.933424840369;TFAP2{A,C}:0.914778991138;HAND1,2:0.902288160498;T:0.888150958251;LMO2:0.87082164999;GLI1..3:0.831812774063;IKZF1:0.809090540481;NR5A1,2:0.765620893453;RXR{A,B,G}:0.760763945656;NKX2-2,8:0.739410222671;ZIC1..3:0.711548289328;UFEwm:0.71034195102;TOPORS:0.64782809971;POU2F1..3:0.607959019019;ZBTB6:0.540415018487;FOS_FOS{B,L1}_JUN{B,D}:0.536162181317;CEBPA,B_DDIT3:0.512904583;PPARG:0.508003750323;POU6F1:0.499856823206;GZF1:0.496192871091;GCM1,2:0.494946877517;KLF4:0.483774735251;HES1:0.483130757619;PDX1:0.473977766737;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.433550808607;HLF:0.428856010923;SPZ1:0.417958560748;ESRRA:0.405376520556;ALX4:0.390203306686;ADNP_IRX_SIX_ZHX:0.374622116504;BACH2:0.360028518441;FOSL2:0.345175079458;TEF:0.344180146369;TFAP4:0.30932890067;NKX2-3_NKX2-5:0.302006897241;HOX{A5,B5}:0.301450806464;GFI1B:0.295289518879;ARID5B:0.283745912465;MTF1:0.281974093658;LHX3,4:0.280333879119;GTF2A1,2:0.274887607765;SOX17:0.273040356742;EBF1:0.248014004414;bHLH_family:0.235821872288;REST:0.226631377374;NANOG:0.222777867689;HOX{A6,A7,B6,B7}:0.213198000526;TLX1..3_NFIC{dimer}:0.212457391065;NKX3-2:0.19554798503;RXRA_VDR{dimer}:0.194266781154;NKX2-1,4:0.191625059451;HMX1:0.187398669142;POU3F1..4:0.0917289894831;NFIL3:0.0904212694887;YY1:0.0612746717602;HOX{A4,D4}:0.0442088281063;XCPE1{core}:0.0421107491486;AR:-3.92036351296e-05;MAZ:-0.018410411377;PAX5:-0.019895677402;MAFB:-0.0405459457077;NFKB1_REL_RELA:-0.0802918654047;HSF1,2:-0.0976209918509;NFIX:-0.102084127815;JUN:-0.103228588169;NR6A1:-0.104000285292;HNF1A:-0.118910712649;NR1H4:-0.127896284516;FOXQ1:-0.138090522148;MED-1{core}:-0.145690694994;SP1:-0.163718397503;HNF4A_NR2F1,2:-0.17389534667;PITX1..3:-0.195057689829;GTF2I:-0.197187378075;ELK1,4_GABP{A,B1}:-0.197811135406;HOXA9_MEIS1:-0.200786444984;ATF2:-0.201898122205;NANOG{mouse}:-0.212404788425;MYFfamily:-0.215710326563;NFE2:-0.218616062634;ESR1:-0.233907529629;STAT5{A,B}:-0.247712124118;RREB1:-0.26419472682;PAX2:-0.265985331213;RBPJ:-0.267623181158;NFE2L1:-0.298062092311;FOXL1:-0.312481874551;CDC5L:-0.314691800366;GFI1:-0.315162982189;SRF:-0.328380486501;EVI1:-0.328438336563;LEF1_TCF7_TCF7L1,2:-0.335634783721;IRF7:-0.338627951955;TLX2:-0.341662936486;ZNF143:-0.346632560597;STAT2,4,6:-0.34757333109;HIC1:-0.35095096759;POU5F1:-0.357043038785;MTE{core}:-0.361258082842;CRX:-0.36459864766;NR3C1:-0.364981176559;POU1F1:-0.373917789982;SPIB:-0.394366307832;FOXN1:-0.417308913485;OCT4_SOX2{dimer}:-0.42271569427;TFDP1:-0.428966452386;ETS1,2:-0.438035626065;EN1,2:-0.445020142017;RUNX1..3:-0.451009596619;E2F1..5:-0.470813277094;SOX{8,9,10}:-0.494517411237;EP300:-0.502366885845;ATF6:-0.524780680508;PBX1:-0.529584448962;FOXO1,3,4:-0.543484517915;RFX2..5_RFXANK_RFXAP:-0.56763869095;ATF5_CREB3:-0.582030685962;FOX{F1,F2,J1}:-0.585400841944;NFY{A,B,C}:-0.598882438836;GATA6:-0.599262399612;ELF1,2,4:-0.610676936411;TFAP2B:-0.615918297912;SOX5:-0.624257894803;NHLH1,2:-0.630505620385;SPI1:-0.63102811194;MYB:-0.642338217685;NFE2L2:-0.652139796559;GATA4:-0.6600479315;ATF4:-0.687824741932;NFATC1..3:-0.691734171744;TAL1_TCF{3,4,12}:-0.712782874876;PAX8:-0.730735192269;NKX6-1,2:-0.747060405489;PATZ1:-0.773811628557;HIF1A:-0.774716590172;SOX2:-0.796559756333;MYBL2:-0.811731129146;CREB1:-0.822630287767;ZFP161:-0.82990158198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.842834714505;AHR_ARNT_ARNT2:-0.873041435209;ZBTB16:-0.878841001217;PAX3,7:-0.880091584068;ALX1:-0.882284198454;MZF1:-0.892985551188;NRF1:-0.89631622233;RFX1:-0.91778577623;MEF2{A,B,C,D}:-0.940922892536;BPTF:-0.962947398542;NKX3-1:-0.973141977885;PAX6:-0.99620055529;AIRE:-1.0037235523;ZNF384:-1.03750298683;CUX2:-1.04764088827;IRF1,2:-1.0707324647;HMGA1,2:-1.07624640732;DBP:-1.09117003971;FOXA2:-1.1081660608;SREBF1,2:-1.12097470239;PRDM1:-1.12362172831;FOXP3:-1.13097585994;PRRX1,2:-1.14009863912;CDX1,2,4:-1.15962554139;BREu{core}:-1.18930584855;RORA:-1.19391793429;EGR1..3:-1.21473723726;DMAP1_NCOR{1,2}_SMARC:-1.22713095025;IKZF2:-1.35295282326;TGIF1:-1.36147999156;FOX{I1,J2}:-1.37290841754;XBP1:-1.41706658694;FOX{D1,D2}:-1.4204561691;FOXP1:-1.4904873886;STAT1,3:-1.73430867857;FOXD3:-1.77678744136;HBP1_HMGB_SSRP1_UBTF:-2.13386582818
|top_motifs=TP53:2.65954914017;TBX4,5:2.22056749716;ZEB1:1.58032397239;ZNF238:1.57738753508;TFCP2:1.53904631713;SNAI1..3:1.43390394515;VSX1,2:1.4318836445;TBP:1.34716466373;ONECUT1,2:1.27145324055;ZNF148:1.23154191187;ZNF423:1.2221168047;PAX4:1.06306860775;PAX1,9:1.0579165674;FOXM1:0.965895719712;SMAD1..7,9:0.960715738837;TEAD1:0.941936836611;MYOD1:0.933424840369;TFAP2{A,C}:0.914778991138;HAND1,2:0.902288160498;T:0.888150958251;LMO2:0.87082164999;GLI1..3:0.831812774063;IKZF1:0.809090540481;NR5A1,2:0.765620893453;RXR{A,B,G}:0.760763945656;NKX2-2,8:0.739410222671;ZIC1..3:0.711548289328;UFEwm:0.71034195102;TOPORS:0.64782809971;POU2F1..3:0.607959019019;ZBTB6:0.540415018487;FOS_FOS{B,L1}_JUN{B,D}:0.536162181317;CEBPA,B_DDIT3:0.512904583;PPARG:0.508003750323;POU6F1:0.499856823206;GZF1:0.496192871091;GCM1,2:0.494946877517;KLF4:0.483774735251;HES1:0.483130757619;PDX1:0.473977766737;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.433550808607;HLF:0.428856010923;SPZ1:0.417958560748;ESRRA:0.405376520556;ALX4:0.390203306686;ADNP_IRX_SIX_ZHX:0.374622116504;BACH2:0.360028518441;FOSL2:0.345175079458;TEF:0.344180146369;TFAP4:0.30932890067;NKX2-3_NKX2-5:0.302006897241;HOX{A5,B5}:0.301450806464;GFI1B:0.295289518879;ARID5B:0.283745912465;MTF1:0.281974093658;LHX3,4:0.280333879119;GTF2A1,2:0.274887607765;SOX17:0.273040356742;EBF1:0.248014004414;bHLH_family:0.235821872288;REST:0.226631377374;NANOG:0.222777867689;HOX{A6,A7,B6,B7}:0.213198000526;TLX1..3_NFIC{dimer}:0.212457391065;NKX3-2:0.19554798503;RXRA_VDR{dimer}:0.194266781154;NKX2-1,4:0.191625059451;HMX1:0.187398669142;POU3F1..4:0.0917289894831;NFIL3:0.0904212694887;YY1:0.0612746717602;HOX{A4,D4}:0.0442088281063;XCPE1{core}:0.0421107491486;AR:-3.92036351296e-05;MAZ:-0.018410411377;PAX5:-0.019895677402;MAFB:-0.0405459457077;NFKB1_REL_RELA:-0.0802918654047;HSF1,2:-0.0976209918509;NFIX:-0.102084127815;JUN:-0.103228588169;NR6A1:-0.104000285292;HNF1A:-0.118910712649;NR1H4:-0.127896284516;FOXQ1:-0.138090522148;MED-1{core}:-0.145690694994;SP1:-0.163718397503;HNF4A_NR2F1,2:-0.17389534667;PITX1..3:-0.195057689829;GTF2I:-0.197187378075;ELK1,4_GABP{A,B1}:-0.197811135406;HOXA9_MEIS1:-0.200786444984;ATF2:-0.201898122205;NANOG{mouse}:-0.212404788425;MYFfamily:-0.215710326563;NFE2:-0.218616062634;ESR1:-0.233907529629;STAT5{A,B}:-0.247712124118;RREB1:-0.26419472682;PAX2:-0.265985331213;RBPJ:-0.267623181158;NFE2L1:-0.298062092311;FOXL1:-0.312481874551;CDC5L:-0.314691800366;GFI1:-0.315162982189;SRF:-0.328380486501;EVI1:-0.328438336563;LEF1_TCF7_TCF7L1,2:-0.335634783721;IRF7:-0.338627951955;TLX2:-0.341662936486;ZNF143:-0.346632560597;STAT2,4,6:-0.34757333109;HIC1:-0.35095096759;POU5F1:-0.357043038785;MTE{core}:-0.361258082842;CRX:-0.36459864766;NR3C1:-0.364981176559;POU1F1:-0.373917789982;SPIB:-0.394366307832;FOXN1:-0.417308913485;OCT4_SOX2{dimer}:-0.42271569427;TFDP1:-0.428966452386;ETS1,2:-0.438035626065;EN1,2:-0.445020142017;RUNX1..3:-0.451009596619;E2F1..5:-0.470813277094;SOX{8,9,10}:-0.494517411237;EP300:-0.502366885845;ATF6:-0.524780680508;PBX1:-0.529584448962;FOXO1,3,4:-0.543484517915;RFX2..5_RFXANK_RFXAP:-0.56763869095;ATF5_CREB3:-0.582030685962;FOX{F1,F2,J1}:-0.585400841944;NFY{A,B,C}:-0.598882438836;GATA6:-0.599262399612;ELF1,2,4:-0.610676936411;TFAP2B:-0.615918297912;SOX5:-0.624257894803;NHLH1,2:-0.630505620385;SPI1:-0.63102811194;MYB:-0.642338217685;NFE2L2:-0.652139796559;GATA4:-0.6600479315;ATF4:-0.687824741932;NFATC1..3:-0.691734171744;TAL1_TCF{3,4,12}:-0.712782874876;PAX8:-0.730735192269;NKX6-1,2:-0.747060405489;PATZ1:-0.773811628557;HIF1A:-0.774716590172;SOX2:-0.796559756333;MYBL2:-0.811731129146;CREB1:-0.822630287767;ZFP161:-0.82990158198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.842834714505;AHR_ARNT_ARNT2:-0.873041435209;ZBTB16:-0.878841001217;PAX3,7:-0.880091584068;ALX1:-0.882284198454;MZF1:-0.892985551188;NRF1:-0.89631622233;RFX1:-0.91778577623;MEF2{A,B,C,D}:-0.940922892536;BPTF:-0.962947398542;NKX3-1:-0.973141977885;PAX6:-0.99620055529;AIRE:-1.0037235523;ZNF384:-1.03750298683;CUX2:-1.04764088827;IRF1,2:-1.0707324647;HMGA1,2:-1.07624640732;DBP:-1.09117003971;FOXA2:-1.1081660608;SREBF1,2:-1.12097470239;PRDM1:-1.12362172831;FOXP3:-1.13097585994;PRRX1,2:-1.14009863912;CDX1,2,4:-1.15962554139;BREu{core}:-1.18930584855;RORA:-1.19391793429;EGR1..3:-1.21473723726;DMAP1_NCOR{1,2}_SMARC:-1.22713095025;IKZF2:-1.35295282326;TGIF1:-1.36147999156;FOX{I1,J2}:-1.37290841754;XBP1:-1.41706658694;FOX{D1,D2}:-1.4204561691;FOXP1:-1.4904873886;STAT1,3:-1.73430867857;FOXD3:-1.77678744136;HBP1_HMGB_SSRP1_UBTF:-2.13386582818
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11301-117B5;search_select_hide=table117:FF:11301-117B5
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Sebocyte, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11951
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage29 years old adult
sexmale
ageNA
cell typesebocyte
cell lineNA
companyN/A
collaborationWeonju Lee (Kyungpook National University School of Medicine)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004900
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11951 CAGE DRX008448 DRR009320
Accession ID Hg19

Library idBAMCTSS
CNhs11951 DRZ000745 DRZ002130
Accession ID Hg38

Library idBAMCTSS
CNhs11951 DRZ012095 DRZ013480
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004900
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GAGTGG sRNA-Seq DRX037009 DRR041375
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GAGTGG DRZ007017


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.142
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0961
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.462
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0677
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.281
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.347
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.541
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.911
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.561
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.146
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.034
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.556
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0025
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.217
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.042
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.217
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11951

Jaspar motifP-value
MA0002.20.468
MA0003.10.38
MA0004.10.744
MA0006.10.147
MA0007.10.565
MA0009.10.154
MA0014.10.807
MA0017.10.249
MA0018.20.03
MA0019.10.943
MA0024.10.0115
MA0025.10.411
MA0027.10.3
MA0028.10.381
MA0029.10.285
MA0030.10.107
MA0031.10.00914
MA0035.20.449
MA0038.10.044
MA0039.20.367
MA0040.10.473
MA0041.10.67
MA0042.10.604
MA0043.10.0932
MA0046.10.148
MA0047.20.41
MA0048.10.78
MA0050.19.26128e-8
MA0051.11.69627e-5
MA0052.10.099
MA0055.10.341
MA0057.10.0175
MA0058.10.451
MA0059.10.212
MA0060.10.0432
MA0061.10.578
MA0062.20.0149
MA0065.20.0033
MA0066.10.098
MA0067.10.0123
MA0068.10.036
MA0069.10.103
MA0070.10.846
MA0071.10.813
MA0072.10.85
MA0073.10.736
MA0074.10.522
MA0076.10.0518
MA0077.10.742
MA0078.10.872
MA0079.20.875
MA0080.23.69426e-6
MA0081.10.0462
MA0083.10.718
MA0084.10.604
MA0087.10.562
MA0088.10.282
MA0090.10.0368
MA0091.10.354
MA0092.10.389
MA0093.10.595
MA0099.24.71045e-4
MA0100.10.102
MA0101.10.78
MA0102.20.0842
MA0103.13.85999e-5
MA0104.20.993
MA0105.10.101
MA0106.12.7018e-8
MA0107.10.723
MA0108.20.0742
MA0111.10.601
MA0112.20.00181
MA0113.10.436
MA0114.10.127
MA0115.10.548
MA0116.10.0157
MA0117.10.521
MA0119.10.113
MA0122.10.251
MA0124.10.161
MA0125.10.319
MA0131.10.201
MA0135.10.0789
MA0136.14.22083e-4
MA0137.20.00566
MA0138.20.0318
MA0139.10.403
MA0140.10.711
MA0141.10.359
MA0142.10.037
MA0143.10.68
MA0144.10.787
MA0145.10.0294
MA0146.10.267
MA0147.10.739
MA0148.10.535
MA0149.10.0271
MA0150.10.969
MA0152.10.843
MA0153.10.365
MA0154.10.0464
MA0155.10.301
MA0156.10.00251
MA0157.10.154
MA0159.10.291
MA0160.10.539
MA0162.10.0414
MA0163.10.00568
MA0164.10.144
MA0258.10.0542
MA0259.10.718



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11951

Novel motifP-value
10.346
100.664
1000.628
1010.0646
1020.609
1030.0598
1040.667
1050.13
1060.00875
1070.0205
1080.121
1090.029
110.151
1100.161
1110.301
1120.0927
1130.277
1140.201
1150.233
1160.219
1170.38
1180.963
1190.173
120.841
1200.111
1210.684
1220.312
1230.635
1240.71
1250.877
1260.387
1270.251
1280.103
1290.174
130.149
1300.794
1310.748
1320.775
1330.0207
1340.738
1350.767
1360.294
1370.173
1380.877
1390.864
140.781
1400.431
1410.322
1420.0579
1430.267
1440.674
1450.0365
1460.0223
1470.161
1480.686
1490.188
150.395
1500.223
1510.246
1520.0155
1530.527
1540.866
1550.75
1560.897
1570.631
1580.145
1590.439
160.0245
1600.0287
1610.102
1620.325
1630.762
1640.441
1650.752
1660.624
1670.463
1680.234
1690.0152
170.0467
180.0773
190.319
20.176
200.678
210.426
220.37
230.319
240.0309
250.899
260.107
270.383
280.915
290.531
30.271
300.241
310.602
320.038
330.12
340.876
350.911
360.84
370.134
380.353
390.109
40.308
400.0284
410.632
420.582
430.287
440.26
450.252
460.2
470.127
480.0994
490.459
50.869
500.54
510.286
520.181
530.714
540.514
550.228
560.442
570.19
580.679
590.0545
60.372
600.216
610.921
620.513
630.103
640.269
650.261
660.784
670.564
680.817
690.316
70.408
700.0219
710.103
720.5
730.0286
740.0435
750.256
760.964
770.024
780.0776
790.0435
80.054
800.411
810.57
820.148
830.614
840.446
850.142
860.876
870.0318
880.233
890.0189
90.73
900.913
910.128
920.172
930.871
940.5
950.186
960.869
970.928
980.299
990.0336



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11951


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000150 (glandular epithelial cell)
0000362 (epidermal cell)
0000154 (protein secreting cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000317 (sebum secreting cell)
0000622 (acinar cell)
1000448 (epithelial cell of sweat gland)
0002308 (epithelial cell of skin gland)
0002140 (acinar cell of sebaceous gland)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002419 (skin gland)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0002365 (exocrine gland)
0007771 (epidermis gland)
0002530 (gland)
0003297 (gland of integumental system)
0001821 (sebaceous gland)
0010317 (germ layer / neural crest derived structure)
0003487 (skin sebaceous gland)
0001820 (sweat gland)
0002330 (exocrine system)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000160 (human sebocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

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