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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005465
|accession_numbers=CAGE;DRX008053;DRR008925;DRZ000350;DRZ001735;DRZ011700;DRZ013085
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.49!309.38!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.40!250.92!AFF3;;chr19:50922187..50922204,+!p1@SPIB!2.35!225.31!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!2.25!178.80!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.06!113.94!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.06!112.66!AFF3;;chr11:47400078..47400106,-!p1@SPI1!2.05!110.95!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!241.96!BACH2;;chr2:231090433..231090469,+!p1@SP140!1.98!95.16!SP140;;chr2:231090471..231090504,+!p2@SP140!1.93!84.49!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.93!83.64!IKZF3;;chr2:68592406..68592424,+!p1@PLEK!1.87!73.40!PLEK;;chr2:100758991..100759009,-!p3@AFF3!1.75!54.62!AFF3;;chr5:88178983..88179012,-!p1@MEF2C!1.71!372.96!MEF2C;;chr3:71355163..71355209,-!p5@FOXP1!1.71!68.28!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.64!62.30!BACH2;;chr7:50344251..50344288,+!p3@IKZF1!1.63!41.39!IKZF1;;chr8:86099884..86099918,+!p4@E2F5!1.60!38.41!E2F5;;chr7:50343634..50343717,+!p2@IKZF1!1.58!36.70!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.56!104.12!BCL11A;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.14!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.50!LYL1;;chr17:38020557..38020572,-!p4@IKZF3!1.54!33.28!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.53!46.51!ZNF860;;chr20:56195474..56195506,-!p1@ZBP1!1.48!29.02!ZBP1;;chrY:21906594..21906622,-!p1@KDM5D!1.46!28.16!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.41!759.58!KLF2;;chr3:71409904..71409927,-!p46@FOXP1!1.39!23.47!FOXP1;;chr19:36391434..36391450,-!p1@NFKBID!1.35!40.97!NFKBID;;chr18:52989031..52989079,-!p2@TCF4!1.34!48.65!TCF4;;chr13:41593425..41593480,-!p1@ELF1!1.33!127.17!ELF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.33!25.60!ZBTB10;;chr1:25256756..25256774,-!p1@RUNX3!1.32!37.13!RUNX3;;chr19:13213704..13213726,-!p3@LYL1!1.32!26.03!LYL1;;chr2:60781201..60781258,-!p3@BCL11A!1.32!20.06!BCL11A;;chr7:50348268..50348366,+!p4@IKZF1!1.32!20.06!IKZF1;;chr19:45579725..45579743,-!p1@ZNF296!1.31!84.92!ZNF296;;chr5:158526756..158526797,-!p3@EBF1!1.31!19.20!EBF1;;chr2:60778035..60778060,-!p4@BCL11A!1.30!22.62!BCL11A;;chr17:38020516..38020544,-!p5@IKZF3!1.29!18.35!IKZF3;;chr7:64838786..64838809,+!p2@ZNF92!1.27!99.43!ZNF92;;chr8:86089627..86089653,+!p3@E2F5!1.27!20.06!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.27!17.50!IKZF3;;chr7:77469439..77469459,+!p6@PHTF2!1.25!16.64!PHTF2;;chr4:185395590..185395627,-!p3@IRF2!1.24!20.48!IRF2;;chr2:68592394..68592405,+!p2@PLEK!1.24!16.22!PLEK;;chr5:88179017..88179046,-!p2@MEF2C!1.22!61.88!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.32!IRF2;;chr3:18486354..18486377,-!p2@SATB1!1.21!19.20!SATB1;;chr2:61108695..61108753,+!p1@REL!1.19!98.57!REL;;chr6:91006503..91006517,-!p3@BACH2!1.19!14.51!BACH2;;chr3:71631151..71631194,-!p15@FOXP1!1.18!15.79!FOXP1;;chr2:231090344..231090361,-!p3@SP110!1.18!14.08!SP110;;chr3:101546827..101546847,+!p2@NFKBIZ!1.17!19.20!NFKBIZ;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.66!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.14!12.80!AFF3;;chr8:86089531..86089544,+!p7@E2F5!1.14!12.80!E2F5;;chr11:128563948..128564003,+!p1@FLI1!1.13!149.78!FLI1;;chr19:42636586..42636607,-!p1@POU2F2!1.11!32.86!POU2F2;;chr9:3525727..3525828,-!p2@RFX3!1.10!29.44!RFX3;;chr6:157098579..157098634,+!p4@ARID1B!1.10!26.03!ARID1B;;chr5:88120151..88120177,-!p6@MEF2C!1.10!11.52!MEF2C;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.52!ZFY;;chr20:50159198..50159299,-!p1@NFATC2!1.09!16.64!NFATC2;;chr6:144385698..144385742,-!p2@PLAGL1!1.09!13.66!PLAGL1;;chr9:117150254..117150271,-!p1@AKNA!1.08!30.30!AKNA;;chr3:18487057..18487105,-!p4@SATB1!1.08!11.09!SATB1;;chr10:104154246..104154347,+!p3@NFKB2!1.07!66.14!NFKB2;;chr10:94449703..94449718,+!p1@HHEX!1.07!42.25!HHEX;;chrX:101186981..101187030,-!p1@ZMAT1!1.05!33.71!ZMAT1;;chr11:47400062..47400077,-!p2@SPI1!1.03!9.81!SPI1;;chr10:94449675..94449694,+!p2@HHEX!1.02!25.60!HHEX;;chr14:75988771..75988826,+!p1@BATF!1.02!12.80!BATF;;chr7:77428066..77428132,+!p2@PHTF2!1.01!61.45!PHTF2;;chr1:91487836..91487854,-!p3@ZNF644!1.01!21.34!ZNF644;;chr2:145277640..145277771,-!p1@ZEB2!1.00!122.90!ZEB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.00!10.67!ZBTB10;;chr16:85936412..85936431,+!p2@IRF8!1.00!8.96!IRF8;;chr2:208394817..208394834,+!p3@CREB1!0.99!36.27!CREB1;;chr19:11959532..11959593,+!p1@ZNF439!0.99!34.14!ZNF439;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.00!RUNX1;;chr5:88179195..88179224,-!p3@MEF2C!0.99!14.08!MEF2C;;chrX:56258844..56258882,+!p1@KLF8!0.99!12.38!KLF8;;chr8:81397820..81397836,+!p2@ZBTB10!0.99!11.09!ZBTB10;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!235.98!TSC22D3;;chr2:61108650..61108687,+!p2@REL!0.98!43.53!REL;;chr4:57522513..57522548,-!p4@HOPX!0.98!8.53!HOPX;;chrY:21906761..21906810,-!p2@KDM5D!0.98!8.53!KDM5D;;chr17:56565257..56565283,-!p2@HSF5!0.96!8.11!HSF5;;chr10:94451574..94451587,+!p6@HHEX!0.96!8.11!HHEX;;chr18:42260030..42260055,+!p3@SETBP1!0.95!9.81!SETBP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.94!78.95!NFKBIE;;chr6:41701898..41701939,-!p5@TFEB!0.94!7.68!TFEB;;chr17:38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|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.49!309.38!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.40!250.92!AFF3;;chr19:50922187..50922204,+!p1@SPIB!2.35!225.31!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!2.25!178.80!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.06!113.94!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.06!112.66!AFF3;;chr11:47400078..47400106,-!p1@SPI1!2.05!110.95!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!241.96!BACH2;;chr2:231090433..231090469,+!p1@SP140!1.98!95.16!SP140;;chr2:231090471..231090504,+!p2@SP140!1.93!84.49!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.93!83.64!IKZF3;;chr2:68592406..68592424,+!p1@PLEK!1.87!73.40!PLEK;;chr2:100758991..100759009,-!p3@AFF3!1.75!54.62!AFF3;;chr5:88178983..88179012,-!p1@MEF2C!1.71!372.96!MEF2C;;chr3:71355163..71355209,-!p5@FOXP1!1.71!68.28!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.64!62.30!BACH2;;chr7:50344251..50344288,+!p3@IKZF1!1.63!41.39!IKZF1;;chr8:86099884..86099918,+!p4@E2F5!1.60!38.41!E2F5;;chr7:50343634..50343717,+!p2@IKZF1!1.58!36.70!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.56!104.12!BCL11A;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.14!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.50!LYL1;;chr17:38020557..38020572,-!p4@IKZF3!1.54!33.28!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.53!46.51!ZNF860;;chr20:56195474..56195506,-!p1@ZBP1!1.48!29.02!ZBP1;;chrY:21906594..21906622,-!p1@KDM5D!1.46!28.16!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.41!759.58!KLF2;;chr3:71409904..71409927,-!p46@FOXP1!1.39!23.47!FOXP1;;chr19:36391434..36391450,-!p1@NFKBID!1.35!40.97!NFKBID;;chr18:52989031..52989079,-!p2@TCF4!1.34!48.65!TCF4;;chr13:41593425..41593480,-!p1@ELF1!1.33!127.17!ELF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.33!25.60!ZBTB10;;chr1:25256756..25256774,-!p1@RUNX3!1.32!37.13!RUNX3;;chr19:13213704..13213726,-!p3@LYL1!1.32!26.03!LYL1;;chr2:60781201..60781258,-!p3@BCL11A!1.32!20.06!BCL11A;;chr7:50348268..50348366,+!p4@IKZF1!1.32!20.06!IKZF1;;chr19:45579725..45579743,-!p1@ZNF296!1.31!84.92!ZNF296;;chr5:158526756..158526797,-!p3@EBF1!1.31!19.20!EBF1;;chr2:60778035..60778060,-!p4@BCL11A!1.30!22.62!BCL11A;;chr17:38020516..38020544,-!p5@IKZF3!1.29!18.35!IKZF3;;chr7:64838786..64838809,+!p2@ZNF92!1.27!99.43!ZNF92;;chr8:86089627..86089653,+!p3@E2F5!1.27!20.06!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.27!17.50!IKZF3;;chr7:77469439..77469459,+!p6@PHTF2!1.25!16.64!PHTF2;;chr4:185395590..185395627,-!p3@IRF2!1.24!20.48!IRF2;;chr2:68592394..68592405,+!p2@PLEK!1.24!16.22!PLEK;;chr5:88179017..88179046,-!p2@MEF2C!1.22!61.88!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.32!IRF2;;chr3:18486354..18486377,-!p2@SATB1!1.21!19.20!SATB1;;chr2:61108695..61108753,+!p1@REL!1.19!98.57!REL;;chr6:91006503..91006517,-!p3@BACH2!1.19!14.51!BACH2;;chr3:71631151..71631194,-!p15@FOXP1!1.18!15.79!FOXP1;;chr2:231090344..231090361,-!p3@SP110!1.18!14.08!SP110;;chr3:101546827..101546847,+!p2@NFKBIZ!1.17!19.20!NFKBIZ;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.66!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.14!12.80!AFF3;;chr8:86089531..86089544,+!p7@E2F5!1.14!12.80!E2F5;;chr11:128563948..128564003,+!p1@FLI1!1.13!149.78!FLI1;;chr19:42636586..42636607,-!p1@POU2F2!1.11!32.86!POU2F2;;chr9:3525727..3525828,-!p2@RFX3!1.10!29.44!RFX3;;chr6:157098579..157098634,+!p4@ARID1B!1.10!26.03!ARID1B;;chr5:88120151..88120177,-!p6@MEF2C!1.10!11.52!MEF2C;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.52!ZFY;;chr20:50159198..50159299,-!p1@NFATC2!1.09!16.64!NFATC2;;chr6:144385698..144385742,-!p2@PLAGL1!1.09!13.66!PLAGL1;;chr9:117150254..117150271,-!p1@AKNA!1.08!30.30!AKNA;;chr3:18487057..18487105,-!p4@SATB1!1.08!11.09!SATB1;;chr10:104154246..104154347,+!p3@NFKB2!1.07!66.14!NFKB2;;chr10:94449703..94449718,+!p1@HHEX!1.07!42.25!HHEX;;chrX:101186981..101187030,-!p1@ZMAT1!1.05!33.71!ZMAT1;;chr11:47400062..47400077,-!p2@SPI1!1.03!9.81!SPI1;;chr10:94449675..94449694,+!p2@HHEX!1.02!25.60!HHEX;;chr14:75988771..75988826,+!p1@BATF!1.02!12.80!BATF;;chr7:77428066..77428132,+!p2@PHTF2!1.01!61.45!PHTF2;;chr1:91487836..91487854,-!p3@ZNF644!1.01!21.34!ZNF644;;chr2:145277640..145277771,-!p1@ZEB2!1.00!122.90!ZEB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.00!10.67!ZBTB10;;chr16:85936412..85936431,+!p2@IRF8!1.00!8.96!IRF8;;chr2:208394817..208394834,+!p3@CREB1!0.99!36.27!CREB1;;chr19:11959532..11959593,+!p1@ZNF439!0.99!34.14!ZNF439;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.00!RUNX1;;chr5:88179195..88179224,-!p3@MEF2C!0.99!14.08!MEF2C;;chrX:56258844..56258882,+!p1@KLF8!0.99!12.38!KLF8;;chr8:81397820..81397836,+!p2@ZBTB10!0.99!11.09!ZBTB10;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!235.98!TSC22D3;;chr2:61108650..61108687,+!p2@REL!0.98!43.53!REL;;chr4:57522513..57522548,-!p4@HOPX!0.98!8.53!HOPX;;chrY:21906761..21906810,-!p2@KDM5D!0.98!8.53!KDM5D;;chr17:56565257..56565283,-!p2@HSF5!0.96!8.11!HSF5;;chr10:94451574..94451587,+!p6@HHEX!0.96!8.11!HHEX;;chr18:42260030..42260055,+!p3@SETBP1!0.95!9.81!SETBP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.94!78.95!NFKBIE;;chr6:41701898..41701939,-!p5@TFEB!0.94!7.68!TFEB;;chr17:38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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051
|ffid_belonging_in_development=CL:0000134,CL:0000051
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
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|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg38.nobarcode.ctss.bed.gz
|id=FF:12151-128F9
|id=FF:12151-128F9
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12531
|library_id_phase_based=2:CNhs12531
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12151
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12151
|name=CD19+ B Cells (pluriselect), donor090325, donation1
|name=CD19+ B Cells (pluriselect), donor090325, donation1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12531,LSID919,release012,COMPLETED
|profile_hcage=CNhs12531,LSID919,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=
Line 84: Line 101:
|top_motifs=POU2F1..3:3.11250546681;POU5F1:2.90505591652;FOXA2:2.25865061471;ELF1,2,4:2.07978027813;DMAP1_NCOR{1,2}_SMARC:2.01028060338;FOX{I1,J2}:1.9582385696;FOX{F1,F2,J1}:1.83918804558;TLX2:1.69978109989;FOXO1,3,4:1.6985909779;SPI1:1.6170614692;AIRE:1.57321930129;IRF1,2:1.51672521828;NFKB1_REL_RELA:1.50653038653;PBX1:1.49866927271;FOXN1:1.49073079639;FOX{D1,D2}:1.48456520294;SPIB:1.39544341045;ETS1,2:1.38160161649;BPTF:1.38131793011;RUNX1..3:1.33356635659;ELK1,4_GABP{A,B1}:1.2965;FOXP3:1.27437607433;RFX2..5_RFXANK_RFXAP:1.25351717922;FOXP1:1.1422203729;NKX6-1,2:1.12843101686;IRF7:1.08225116075;PAX3,7:1.05677150684;HBP1_HMGB_SSRP1_UBTF:1.04911479211;CREB1:1.02533282725;STAT1,3:1.01536546106;OCT4_SOX2{dimer}:0.945315048541;CRX:0.930029927289;CDX1,2,4:0.870672053211;ATF5_CREB3:0.813302022543;HES1:0.79100629313;SREBF1,2:0.781620090481;MYOD1:0.765044212094;HMX1:0.748397925086;PDX1:0.74025685611;NANOG{mouse}:0.702703555866;TGIF1:0.656547232391;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631900473391;PAX6:0.628881283655;NKX2-2,8:0.605034956917;PAX2:0.591454127932;ATF2:0.585080804267;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.569501309885;ATF4:0.54324989932;ZEB1:0.535145533535;ZNF143:0.507813176774;YY1:0.459571805777;BREu{core}:0.456393038208;ZBTB16:0.446938472638;LMO2:0.425116365978;MYB:0.41902501871;VSX1,2:0.407062922819;PPARG:0.385228011976;PAX4:0.314512448331;CUX2:0.278864447528;NFY{A,B,C}:0.273286905905;RORA:0.267798629781;HOX{A6,A7,B6,B7}:0.262191814509;FOXL1:0.231480113727;MEF2{A,B,C,D}:0.230023286026;NKX3-1:0.223512315552;GATA6:0.208306027525;ALX1:0.208007209345;NFIL3:0.200662987701;SOX{8,9,10}:0.186830026821;NRF1:0.160310139048;SNAI1..3:0.156857857727;FOXQ1:0.15085554987;SOX5:0.145311108019;NHLH1,2:0.128683874127;T:0.126953595092;ONECUT1,2:0.123979473278;IKZF2:0.11180105237;CEBPA,B_DDIT3:0.103134019947;HIF1A:0.0674227469975;RFX1:0.0449792694279;DBP:0.0398054529895;PITX1..3:0.0241509264758;STAT5{A,B}:0.00945628732408;NKX2-1,4:0.00140631630747;bHLH_family:-0.0261293708486;E2F1..5:-0.0506701107773;TEF:-0.0641754977838;AHR_ARNT_ARNT2:-0.0703775667966;ZNF148:-0.076395458546;HOXA9_MEIS1:-0.0785515130951;POU1F1:-0.0918185735744;NFATC1..3:-0.102540081435;NR5A1,2:-0.115854957563;TAL1_TCF{3,4,12}:-0.117295464333;GLI1..3:-0.124856076688;RXRA_VDR{dimer}:-0.125721302425;ADNP_IRX_SIX_ZHX:-0.128444709062;PRRX1,2:-0.133983188577;EP300:-0.135596725797;JUN:-0.158475582601;HMGA1,2:-0.169471454277;ARID5B:-0.183985225998;AR:-0.237029967749;LEF1_TCF7_TCF7L1,2:-0.247856132486;GFI1:-0.260636070158;RBPJ:-0.294183385056;SPZ1:-0.299798163138;ESR1:-0.30358801706;MAFB:-0.307751419635;NFIX:-0.328059805301;ALX4:-0.331792709326;ATF6:-0.331811630913;RXR{A,B,G}:-0.354021997363;CDC5L:-0.355225043521;ZFP161:-0.358401944353;EVI1:-0.367512077735;TOPORS:-0.396186941405;FOSL2:-0.402819384463;HNF4A_NR2F1,2:-0.426470229615;NR6A1:-0.443019455104;HLF:-0.463746650376;TBX4,5:-0.483933497102;ZNF384:-0.48525268535;HNF1A:-0.530321430787;SRF:-0.531738321865;FOS_FOS{B,L1}_JUN{B,D}:-0.543107380832;EBF1:-0.565833704654;XBP1:-0.578065534112;NKX2-3_NKX2-5:-0.58557683884;MYFfamily:-0.600224792403;EN1,2:-0.603736406588;TBP:-0.647443451502;PAX8:-0.6512874532;BACH2:-0.664624488809;HOX{A5,B5}:-0.668767363526;PRDM1:-0.670320077079;GATA4:-0.700559760503;HAND1,2:-0.706670854928;XCPE1{core}:-0.716973332615;EGR1..3:-0.726954200425;SP1:-0.734132828254;MYBL2:-0.767971271383;ZNF238:-0.775271300952;TFAP4:-0.779386888124;NFE2L2:-0.802839162682;HOX{A4,D4}:-0.846114261033;NR1H4:-0.848256153109;MAZ:-0.853762335847;HSF1,2:-0.859369534072;STAT2,4,6:-0.874275604451;NFE2:-0.875637963647;SMAD1..7,9:-0.878555638456;NR3C1:-0.926256640517;PATZ1:-0.92758015185;MTE{core}:-0.94510224031;NANOG:-0.948171987501;MZF1:-0.96298315767;SOX2:-0.964562181431;REST:-1.00242842333;MED-1{core}:-1.03683989878;SOX17:-1.03715561661;NKX3-2:-1.08580782542;TFCP2:-1.10546208752;FOXD3:-1.13476467101;FOXM1:-1.16381430268;RREB1:-1.17943061962;GFI1B:-1.19957159082;POU6F1:-1.22356391846;GCM1,2:-1.23048628961;TP53:-1.391651355;GTF2I:-1.46562554498;TFAP2{A,C}:-1.46957039333;ZNF423:-1.47934231095;NFE2L1:-1.56344124049;UFEwm:-1.56808814557;ESRRA:-1.56888571385;MTF1:-1.58844271159;HIC1:-1.62953986723;LHX3,4:-1.63195375273;TEAD1:-1.66174431648;TFAP2B:-1.66219828507;GZF1:-1.70387882424;TFDP1:-1.7655940557;GTF2A1,2:-1.85316692269;POU3F1..4:-1.89304449037;ZIC1..3:-1.91616680966;ZBTB6:-1.92393125307;PAX5:-1.99327689532;TLX1..3_NFIC{dimer}:-2.07796386947;KLF4:-2.1060115936;IKZF1:-2.52163514916;PAX1,9:-2.58824818124
|top_motifs=POU2F1..3:3.11250546681;POU5F1:2.90505591652;FOXA2:2.25865061471;ELF1,2,4:2.07978027813;DMAP1_NCOR{1,2}_SMARC:2.01028060338;FOX{I1,J2}:1.9582385696;FOX{F1,F2,J1}:1.83918804558;TLX2:1.69978109989;FOXO1,3,4:1.6985909779;SPI1:1.6170614692;AIRE:1.57321930129;IRF1,2:1.51672521828;NFKB1_REL_RELA:1.50653038653;PBX1:1.49866927271;FOXN1:1.49073079639;FOX{D1,D2}:1.48456520294;SPIB:1.39544341045;ETS1,2:1.38160161649;BPTF:1.38131793011;RUNX1..3:1.33356635659;ELK1,4_GABP{A,B1}:1.2965;FOXP3:1.27437607433;RFX2..5_RFXANK_RFXAP:1.25351717922;FOXP1:1.1422203729;NKX6-1,2:1.12843101686;IRF7:1.08225116075;PAX3,7:1.05677150684;HBP1_HMGB_SSRP1_UBTF:1.04911479211;CREB1:1.02533282725;STAT1,3:1.01536546106;OCT4_SOX2{dimer}:0.945315048541;CRX:0.930029927289;CDX1,2,4:0.870672053211;ATF5_CREB3:0.813302022543;HES1:0.79100629313;SREBF1,2:0.781620090481;MYOD1:0.765044212094;HMX1:0.748397925086;PDX1:0.74025685611;NANOG{mouse}:0.702703555866;TGIF1:0.656547232391;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.631900473391;PAX6:0.628881283655;NKX2-2,8:0.605034956917;PAX2:0.591454127932;ATF2:0.585080804267;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.569501309885;ATF4:0.54324989932;ZEB1:0.535145533535;ZNF143:0.507813176774;YY1:0.459571805777;BREu{core}:0.456393038208;ZBTB16:0.446938472638;LMO2:0.425116365978;MYB:0.41902501871;VSX1,2:0.407062922819;PPARG:0.385228011976;PAX4:0.314512448331;CUX2:0.278864447528;NFY{A,B,C}:0.273286905905;RORA:0.267798629781;HOX{A6,A7,B6,B7}:0.262191814509;FOXL1:0.231480113727;MEF2{A,B,C,D}:0.230023286026;NKX3-1:0.223512315552;GATA6:0.208306027525;ALX1:0.208007209345;NFIL3:0.200662987701;SOX{8,9,10}:0.186830026821;NRF1:0.160310139048;SNAI1..3:0.156857857727;FOXQ1:0.15085554987;SOX5:0.145311108019;NHLH1,2:0.128683874127;T:0.126953595092;ONECUT1,2:0.123979473278;IKZF2:0.11180105237;CEBPA,B_DDIT3:0.103134019947;HIF1A:0.0674227469975;RFX1:0.0449792694279;DBP:0.0398054529895;PITX1..3:0.0241509264758;STAT5{A,B}:0.00945628732408;NKX2-1,4:0.00140631630747;bHLH_family:-0.0261293708486;E2F1..5:-0.0506701107773;TEF:-0.0641754977838;AHR_ARNT_ARNT2:-0.0703775667966;ZNF148:-0.076395458546;HOXA9_MEIS1:-0.0785515130951;POU1F1:-0.0918185735744;NFATC1..3:-0.102540081435;NR5A1,2:-0.115854957563;TAL1_TCF{3,4,12}:-0.117295464333;GLI1..3:-0.124856076688;RXRA_VDR{dimer}:-0.125721302425;ADNP_IRX_SIX_ZHX:-0.128444709062;PRRX1,2:-0.133983188577;EP300:-0.135596725797;JUN:-0.158475582601;HMGA1,2:-0.169471454277;ARID5B:-0.183985225998;AR:-0.237029967749;LEF1_TCF7_TCF7L1,2:-0.247856132486;GFI1:-0.260636070158;RBPJ:-0.294183385056;SPZ1:-0.299798163138;ESR1:-0.30358801706;MAFB:-0.307751419635;NFIX:-0.328059805301;ALX4:-0.331792709326;ATF6:-0.331811630913;RXR{A,B,G}:-0.354021997363;CDC5L:-0.355225043521;ZFP161:-0.358401944353;EVI1:-0.367512077735;TOPORS:-0.396186941405;FOSL2:-0.402819384463;HNF4A_NR2F1,2:-0.426470229615;NR6A1:-0.443019455104;HLF:-0.463746650376;TBX4,5:-0.483933497102;ZNF384:-0.48525268535;HNF1A:-0.530321430787;SRF:-0.531738321865;FOS_FOS{B,L1}_JUN{B,D}:-0.543107380832;EBF1:-0.565833704654;XBP1:-0.578065534112;NKX2-3_NKX2-5:-0.58557683884;MYFfamily:-0.600224792403;EN1,2:-0.603736406588;TBP:-0.647443451502;PAX8:-0.6512874532;BACH2:-0.664624488809;HOX{A5,B5}:-0.668767363526;PRDM1:-0.670320077079;GATA4:-0.700559760503;HAND1,2:-0.706670854928;XCPE1{core}:-0.716973332615;EGR1..3:-0.726954200425;SP1:-0.734132828254;MYBL2:-0.767971271383;ZNF238:-0.775271300952;TFAP4:-0.779386888124;NFE2L2:-0.802839162682;HOX{A4,D4}:-0.846114261033;NR1H4:-0.848256153109;MAZ:-0.853762335847;HSF1,2:-0.859369534072;STAT2,4,6:-0.874275604451;NFE2:-0.875637963647;SMAD1..7,9:-0.878555638456;NR3C1:-0.926256640517;PATZ1:-0.92758015185;MTE{core}:-0.94510224031;NANOG:-0.948171987501;MZF1:-0.96298315767;SOX2:-0.964562181431;REST:-1.00242842333;MED-1{core}:-1.03683989878;SOX17:-1.03715561661;NKX3-2:-1.08580782542;TFCP2:-1.10546208752;FOXD3:-1.13476467101;FOXM1:-1.16381430268;RREB1:-1.17943061962;GFI1B:-1.19957159082;POU6F1:-1.22356391846;GCM1,2:-1.23048628961;TP53:-1.391651355;GTF2I:-1.46562554498;TFAP2{A,C}:-1.46957039333;ZNF423:-1.47934231095;NFE2L1:-1.56344124049;UFEwm:-1.56808814557;ESRRA:-1.56888571385;MTF1:-1.58844271159;HIC1:-1.62953986723;LHX3,4:-1.63195375273;TEAD1:-1.66174431648;TFAP2B:-1.66219828507;GZF1:-1.70387882424;TFDP1:-1.7655940557;GTF2A1,2:-1.85316692269;POU3F1..4:-1.89304449037;ZIC1..3:-1.91616680966;ZBTB6:-1.92393125307;PAX5:-1.99327689532;TLX1..3_NFIC{dimer}:-2.07796386947;KLF4:-2.1060115936;IKZF1:-2.52163514916;PAX1,9:-2.58824818124
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12151-128F9;search_select_hide=table117:FF:12151-128F9
}}
}}

Latest revision as of 18:32, 4 June 2020

Name:CD19+ B Cells (pluriselect), donor090325, donation1
Species:Human (Homo sapiens)
Library ID:CNhs12531
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageNA
cell typeb cell
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005465
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12531 CAGE DRX008053 DRR008925
Accession ID Hg19

Library idBAMCTSS
CNhs12531 DRZ000350 DRZ001735
Accession ID Hg38

Library idBAMCTSS
CNhs12531 DRZ011700 DRZ013085
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.068
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.172
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.154
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.268
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.154
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.154
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.363
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.38
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.456
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.722
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.179
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.314
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.246
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.153
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.57
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.154
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.154
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.536
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.289
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.917
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.293
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.435
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.378
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.268
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.268
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.313
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix1.017
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.75
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.154
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12531

Jaspar motifP-value
MA0002.27.69392e-5
MA0003.10.886
MA0004.10.156
MA0006.10.394
MA0007.10.554
MA0009.10.712
MA0014.10.28
MA0017.10.164
MA0018.20.0109
MA0019.10.795
MA0024.10.547
MA0025.10.815
MA0027.10.717
MA0028.11.72697e-6
MA0029.10.33
MA0030.10.00766
MA0031.10.0636
MA0035.20.927
MA0038.10.785
MA0039.20.121
MA0040.10.985
MA0041.10.209
MA0042.10.817
MA0043.10.00359
MA0046.10.59
MA0047.20.193
MA0048.10.561
MA0050.16.32324e-12
MA0051.14.66978e-6
MA0052.10.406
MA0055.10.367
MA0057.10.531
MA0058.10.0627
MA0059.10.245
MA0060.10.683
MA0061.14.57432e-10
MA0062.26.77707e-17
MA0065.20.0863
MA0066.10.611
MA0067.10.0464
MA0068.10.00122
MA0069.10.591
MA0070.10.228
MA0071.10.973
MA0072.10.829
MA0073.10.545
MA0074.10.935
MA0076.12.46711e-10
MA0077.10.17
MA0078.10.739
MA0079.20.66
MA0080.22.94931e-12
MA0081.16.90799e-5
MA0083.10.263
MA0084.10.298
MA0087.10.146
MA0088.10.0985
MA0090.19.29019e-5
MA0091.10.835
MA0092.10.62
MA0093.10.161
MA0099.21.06481e-4
MA0100.10.0758
MA0101.13.35352e-8
MA0102.20.0146
MA0103.10.0316
MA0104.20.0748
MA0105.11.85185e-9
MA0106.10.244
MA0107.12.07042e-8
MA0108.24.16751e-5
MA0111.10.409
MA0112.20.202
MA0113.10.653
MA0114.10.205
MA0115.10.428
MA0116.13.07384e-5
MA0117.10.575
MA0119.10.419
MA0122.10.414
MA0124.10.442
MA0125.10.962
MA0131.10.0167
MA0135.10.0576
MA0136.12.29257e-20
MA0137.20.414
MA0138.20.751
MA0139.10.346
MA0140.10.722
MA0141.10.718
MA0142.10.383
MA0143.10.753
MA0144.10.988
MA0145.10.243
MA0146.10.196
MA0147.10.122
MA0148.10.914
MA0149.10.229
MA0150.10.867
MA0152.10.235
MA0153.10.0122
MA0154.12.65054e-4
MA0155.10.585
MA0156.11.4178e-16
MA0157.10.128
MA0159.10.164
MA0160.10.396
MA0162.10.986
MA0163.11.33777e-6
MA0164.10.676
MA0258.10.339
MA0259.10.483



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12531

Novel motifP-value
10.183
100.0267
1000.487
1010.386
1020.958
1030.782
1040.211
1050.365
1060.683
1070.12
1080.133
1090.114
110.239
1100.341
1110.207
1120.412
1130.0451
1140.693
1150.775
1160.671
1174.47247e-4
1180.179
1190.957
120.823
1200.648
1210.209
1220.621
1230.0251
1240.534
1250.125
1260.218
1270.971
1280.313
1290.332
130.287
1300.461
1310.584
1320.338
1330.04
1340.463
1350.674
1360.215
1370.0131
1380.402
1390.203
140.301
1400.777
1410.451
1420.544
1430.236
1440.661
1450.189
1460.333
1470.0325
1480.304
1490.817
150.204
1500.877
1510.832
1520.794
1530.861
1540.909
1550.0189
1560.733
1570.227
1580.237
1590.0817
160.542
1600.845
1610.224
1620.188
1630.39
1640.239
1650.18
1660.515
1670.104
1680.25
1690.882
170.741
180.752
190.465
20.356
200.184
210.841
220.941
230.489
240.7
250.0277
260.339
270.819
280.343
290.0417
30.066
300.144
310.919
320.0965
330.355
340.937
350.193
360.0399
370.0905
380.486
390.408
40.912
400.214
410.133
420.135
430.27
440.953
450.801
460.538
470.132
480.328
490.192
50.469
500.983
510.762
520.545
530.368
540.979
550.366
560.827
570.765
580.05
590.858
60.742
600.494
610.0492
620.125
630.812
640.538
650.965
660.897
670.219
680.524
690.67
70.136
700.355
710.0562
720.0335
730.428
740.31
750.00292
760.025
770.283
780.284
790.327
80.855
800.0121
810.204
820.427
830.971
840.16
850.723
860.0577
870.0544
880.728
890.401
90.767
900.0977
910.637
920.855
930.985
940.0827
950.00472
960.773
970.603
980.335
990.00383



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12531


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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