FF:10555-107I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005234 | |||
|accession_numbers=CAGE;DRX007963;DRR008835;DRZ000260;DRZ001645;DRZ011610;DRZ012995 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!3.44!2780.04!MYCN;;chr11:71955210..71955227,-!p1@PHOX2A!3.00!988.57!PHOX2A;;chr4:174451370..174451387,-!p1@HAND2!2.85!705.06!HAND2;;chr2:16081912..16081931,+!p2@MYCN!2.53!340.08!MYCN;;chr2:16082155..16082169,+!p3@MYCN!2.34!218.42!MYCN;;chr3:128212033..128212051,-!p1@GATA2!2.28!187.84!GATA2;;chr6:50786591..50786614,+!p1@TFAP2B!2.26!182.05!TFAP2B;;chr5:153857778..153857794,-!p1@HAND1!2.19!155.08!HAND1;;chr2:16080635..16080650,+!p4@MYCN!2.18!149.07!MYCN;;chr5:50679228..50679288,+!p1@ISL1!2.14!135.64!ISL1;;chr4:41750731..41750748,-!p1@PHOX2B!2.04!109.65!PHOX2B;;chr2:74741569..74741620,+!p1@TLX2!1.99!97.20!TLX2;;chr4:174451350..174451363,-!p3@HAND2!1.97!93.37!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.95!235.35!TWIST1;;chr14:36003363..36003378,+!p1@INSM2!1.95!88.35!INSM2;;chr10:8096631..8096660,+!p1@GATA3!1.90!95.01!GATA3;;chr2:16082395..16082415,+!p6@MYCN!1.85!70.33!MYCN;;chr2:16080823..16080836,+!p5@MYCN!1.84!67.93!MYCN;;chr13:100634031..100634045,+!p1@ZIC2!1.79!60.72!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.77!57.44!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.68!46.63!ZIC5;;chr6:50786571..50786590,+!p2@TFAP2B!1.65!43.90!TFAP2B;;chr2:16082094..16082106,+!p7@MYCN!1.65!43.47!MYCN;;chr4:174450089..174450153,-!p2@HAND2!1.63!41.94!HAND2;;chr2:16082418..16082429,+!p8@MYCN!1.63!41.28!MYCN;;chr8:40755333..40755352,-!p1@ZMAT4!1.61!40.19!ZMAT4;;chr1:214161272..214161322,+!p1@PROX1!1.60!53.84!PROX1;;chr6:50786547..50786564,+!p3@TFAP2B!1.57!35.82!TFAP2B;;chr6:50789717..50789729,+!p4@TFAP2B!1.56!35.49!TFAP2B;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.96!PRRX2;;chr4:41750839..41750850,-!p2@PHOX2B!1.53!33.09!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.77!TCF12;;chr2:2334997..2335053,-!p1@MYT1L!1.48!29.27!MYT1L;;chr13:100634004..100634025,+!p2@ZIC2!1.48!28.94!ZIC2;;chr11:8102749..8102769,+!p2@TUB!1.47!54.60!TUB;;chr2:25475120..25475176,-!p2@DNMT3A!1.47!38.00!DNMT3A;;chr18:52989031..52989079,-!p2@TCF4!1.46!63.89!TCF4;;chr10:8096772..8096787,+!p2@GATA3!1.45!32.22!GATA3;;chr7:35293685..35293718,-!p1@TBX20!1.43!25.99!TBX20;;chr3:128206762..128206781,-!p2@GATA2!1.42!151.58!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.42!25.34!HAND1;;chr2:74741642..74741658,+!p2@TLX2!1.41!24.46!TLX2;;chr17:46622440..46622477,-!p5@HOXB2!1.38!25.66!HOXB2;;chr18:52969674..52969685,-!p24@TCF4!1.38!23.04!TCF4;;chr21:47063625..47063658,+!p1@PCBP3!1.37!95.01!PCBP3;;chr4:41750922..41750939,-!p4@PHOX2B!1.36!22.17!PHOX2B;;chr19:9609272..9609297,-!p1@ZNF560!1.36!21.95!ZNF560;;chr13:37494365..37494381,-!p1@SMAD9!1.35!36.69!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.12!ZNF711;;chr16:67197654..67197716,+!p3@HSF4!1.35!21.62!HSF4;;chr2:2328725..2328739,-!p5@MYT1L!1.34!21.08!MYT1L;;chr17:59477233..59477263,+!p1@TBX2!1.32!59.85!TBX2;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.02!RCOR2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.29!18.46!PEG3;;chr1:151032922..151032951,+!p2@MLLT11!1.28!29.81!MLLT11;;chr17:53342311..53342400,+!p1@HLF!1.28!20.75!HLF;;chr17:41623692..41623715,-!p1@ETV4!1.25!70.11!ETV4;;chr11:8102846..8102892,+!p1@TUB!1.24!22.93!TUB;;chr9:14314131..14314147,-!p2@NFIB!1.23!87.80!NFIB;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.38!BCL11A;;chr10:70320074..70320106,+!p1@TET1!1.23!32.11!TET1;;chr9:77112244..77112262,+!p1@RORB!1.23!17.69!RORB;;chr5:170736243..170736279,+!p1@TLX3!1.23!16.16!TLX3;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.62!ASCL1;;chr17:59477197..59477212,+!p2@TBX2!1.19!24.90!TBX2;;chr4:81118647..81118666,+!p1@PRDM8!1.19!19.00!PRDM8;;chr2:219849897..219849928,-!p2@FEV!1.19!14.52!FEV;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.60!GATA3;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.17!131.16!ZNF595;;chr18:56532100..56532130,+!p1@ZNF532!1.16!24.90!ZNF532;;chr18:55102628..55102646,+!p2@ONECUT2!1.16!13.43!ONECUT2;;chr2:219849805..219849819,-!p3@FEV!1.16!13.43!FEV;;chr12:54447637..54447659,+!p4@HOXC4!1.16!13.43!HOXC4;;chr4:41750793..41750804,-!p5@PHOX2B!1.15!13.11!PHOX2B;;chr5:150284532..150284549,-!p1@ZNF300!1.13!26.10!ZNF300;;chr4:299227..299272,-!p1@ZNF732!1.13!12.45!ZNF732;;chr18:56531584..56531646,+!p4@ZNF532!1.12!16.27!ZNF532;;chr12:54447599..54447630,+!p3@HOXC4!1.12!14.96!HOXC4;;chr2:45168997..45169020,+!p4@SIX3!1.12!12.12!SIX3;;chr2:166326200..166326216,+!p1@CSRNP3!1.11!17.26!CSRNP3;;chr2:176994408..176994492,+!p1@HOXD8!1.11!12.01!HOXD8;;chr10:50604121..50604142,-!p1@DRGX!1.11!11.79!DRGX;;chr1:151032860..151032918,+!p1@MLLT11!1.10!137.71!MLLT11;;chr3:40547564..40547616,+!p1@ZNF620!1.10!16.49!ZNF620;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.36!HOXC9;;chrY:21906594..21906622,-!p1@KDM5D!1.09!11.36!KDM5D;;chr18:55102598..55102623,+!p1@ONECUT2!1.09!11.36!ONECUT2;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.28!TBX3;;chr19:12163769..12163798,-!p1@ZNF878!1.08!14.42!ZNF878;;chr10:131762504..131762555,-!p1@EBF3!1.08!11.03!EBF3;;chr6:50786631..50786635,+!p11@TFAP2B!1.08!11.03!TFAP2B;;chr19:22817119..22817145,+!p1@ZNF492!1.07!18.13!ZNF492;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.67!HOXB2;;chr7:19185475..19185487,-!p1@FERD3L!1.07!10.70!FERD3L;;chr12:85673977..85674015,+!p1@ALX1!1.06!10.59!ALX1;;chr13:100634130..100634143,+!p3@ZIC2!1.06!10.48!ZIC2;;chrX:84498989..84499003,+!p1@ZNF711!1.05!13.98!ZNF711;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.27!TBX3;;chr11:8102819..8102845,+!p3@TUB!1.04!12.56!TUB;;chr16:73092898..73092931,-!p1@ZFHX3!1.03!37.79!ZFHX3;;chr19:38042240..38042309,+!p2@ZNF540!1.03!15.07!ZNF540;;chr2:16082384..16082391,+!p9@MYCN!1.03!9.61!MYCN;;chr2:5832493..5832507,+!p2@SOX11!1.02!9.50!SOX11;;chr2:60780753..60780800,-!p1@BCL11A!1.01!46.85!BCL11A;;chr8:60031682..60031710,-!p2@TOX!1.01!15.07!TOX;;chr9:132427972..132428056,+!p1@PRRX2!1.01!12.23!PRRX2;;chr4:41750860..41750867,-!p8@PHOX2B!1.01!9.17!PHOX2B;;chr7:19157043..19157088,-!p2@TWIST1!1.00!23.26!TWIST1;;chr10:8100691..8100732,+!p5@GATA3!1.00!8.96!GATA3;;chr19:20188776..20188826,+!p1@ZNF90!0.99!24.14!ZNF90;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.89!ZNF662;;chr6:20402102..20402152,+!p1@E2F3!0.98!35.60!E2F3;;chr13:72441315..72441454,-!p1@DACH1!0.98!17.26!DACH1;;chr8:28748099..28748141,+!p2@HMBOX1!0.97!26.76!HMBOX1;;chr13:100638100..100638115,+!p4@ZIC2!0.97!8.41!ZIC2;;chr11:66188503..66188511,+!p1@NPAS4!0.97!8.30!NPAS4;;chr7:63505799..63505904,+!p1@ZNF727!0.96!8.08!ZNF727;;chr9:14314106..14314119,-!p5@NFIB!0.95!14.52!NFIB;;chr20:62795799..62795819,+!p1@MYT1!0.95!7.97!MYT1;;chr2:74740569..74740580,+!p4@TLX2!0.95!7.86!TLX2;;chr5:170736216..170736238,+!p2@TLX3!0.95!7.86!TLX3;;chr9:14313893..14313908,-!p7@NFIB!0.94!11.36!NFIB;;chr8:30890810..30890880,-!p1@PURG!0.94!7.75!PURG;;chr12:115121770..115121781,-!p4@TBX3!0.94!7.75!TBX3;;chr2:2328741..2328756,-!p8@MYT1L!0.94!7.75!MYT1L;;chr4:41750895..41750904,-!p6@PHOX2B!0.94!7.75!PHOX2B;;chr2:74726710..74726736,-!p3@LBX2!0.94!7.64!LBX2;;chr7:19185493..19185503,-!p2@FERD3L!0.94!7.64!FERD3L;;chr20:32274179..32274213,-!p1@E2F1!0.93!51.66!E2F1;;chr18:53257027..53257052,-!p3@TCF4!0.93!31.02!TCF4;;chr5:153857819..153857824,-!p3@HAND1!0.93!7.54!HAND1;;chr1:153940354..153940395,+!p1@CREB3L4!0.92!30.47!CREB3L4;;chr1:247171347..247171366,-!p2@ZNF695!0.92!13.65!ZNF695;;chr3:44626446..44626477,+!p1@ZNF660!0.92!13.54!ZNF660;;chrX:131624056..131624069,-!p2@MBNL3!0.92!10.05!MBNL3;;chr2:25475094..25475112,-!p3@DNMT3A!0.91!7.21!DNMT3A;;chr19:37096139..37096170,-!p2@ZNF529!0.90!20.20!ZNF529;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.83!KLF15;;chr19:9609247..9609262,-!p2@ZNF560!0.90!6.99!ZNF560;;chr17:41277372..41277418,-!p1@BRCA1!0.89!25.77!BRCA1;;chr9:128509663..128509715,+!p1@PBX3!0.89!24.03!PBX3;;chr19:38720294..38720348,-!p1@DPF1!0.89!8.63!DPF1;;chr19:57183114..57183145,-!p1@ZNF835!0.89!7.64!ZNF835;;chr19:24097675..24097699,+!p1@ZNF726!0.88!23.15!ZNF726;;chr19:57901326..57901385,+!p2@ZNF548!0.88!16.49!ZNF548;;chr2:71127699..71127744,+!p1@VAX2!0.88!13.87!VAX2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.66!ZNF177;;chr3:126076242..126076257,-!p1@KLF15!0.87!8.19!KLF15;;chr2:2335109..2335134,-!p2@MYT1L!0.87!6.33!MYT1L;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.15!CREB5;;chr10:44070016..44070069,-!p1@ZNF239!0.86!19.66!ZNF239;;chr8:80679993..80680011,-!p1@HEY1!0.86!9.17!HEY1;;chr4:8873716..8873738,-!p2@HMX1!0.86!6.22!HMX1;;chr19:53758058..53758088,-!p2@ZNF677!0.85!21.08!ZNF677;;chr9:114287433..114287513,+!p1@ZNF483!0.85!16.38!ZNF483;;chr19:56988677..56988729,-!p1@ZNF667!0.85!11.03!ZNF667;;chr8:60031762..60031803,-!p3@TOX!0.85!9.17!TOX;;chr6:108977520..108977534,+!p7@FOXO3!0.85!6.12!FOXO3;;chr1:43148625..43148710,+!p3@YBX1!0.84!11.03!YBX1;;chr5:178368186..178368238,+!p1@ZNF454!0.84!10.92!ZNF454;;chr19:44455368..44455396,+!p1@ZNF221!0.83!20.75!ZNF221;;chr12:133706820..133706881,-!p1@ZNF891!0.83!12.56!ZNF891;;chr6:31869828..31869880,-!p1@ZBTB12!0.83!11.25!ZBTB12;;chr19:11750566..11750627,+!p1@ZNF833P!0.83!7.97!ZNF833P;;chr19:38183138..38183157,-!p2@ZNF781!0.83!5.79!ZNF781;;chr1:214161619..214161629,+!p5@PROX1!0.83!5.79!PROX1;;chr2:45168959..45168990,+!p6@SIX3!0.83!5.79!SIX3;;chr19:9695169..9695188,-!p1@ZNF121!0.82!105.82!ZNF121;;chr5:176738887..176738934,-!p1@MXD3!0.82!40.63!MXD3;;chr2:60778035..60778060,-!p4@BCL11A!0.82!6.77!BCL11A;;chr3:52002412..52002433,-!p7@PCBP4!0.82!5.68!PCBP4;;chr13:37494275..37494304,-!p2@SMAD9!0.82!5.68!SMAD9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.82!5.57!HOXC5;;chr2:219850049..219850060,-!p8@FEV!0.82!5.57!FEV;;chr2:219850277..219850288,-!p9@FEV!0.82!5.57!FEV;;chr9:77112225..77112238,+!p2@RORB!0.81!5.46!RORB;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.46!TCF12;;chr19:20959098..20959117,+!p1@ZNF66P!0.80!23.70!ZNF66P;;chr19:22034809..22034878,-!p2@ZNF43!0.80!20.20!ZNF43;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.77!MEIS1;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.78!NR2F1;;chr6:50786057..50786069,+!p9@TFAP2B!0.80!5.35!TFAP2B;;chr13:37494248..37494260,-!p3@SMAD9!0.80!5.35!SMAD9;;chr3:141105235..141105307,+!p7@ZBTB38!0.80!5.35!ZBTB38;;chr16:67197334..67197362,+!p8@HSF4!0.80!5.24!HSF4;;chr10:111967345..111967422,+!p1@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| |expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!3.44!2780.04!MYCN;;chr11:71955210..71955227,-!p1@PHOX2A!3.00!988.57!PHOX2A;;chr4:174451370..174451387,-!p1@HAND2!2.85!705.06!HAND2;;chr2:16081912..16081931,+!p2@MYCN!2.53!340.08!MYCN;;chr2:16082155..16082169,+!p3@MYCN!2.34!218.42!MYCN;;chr3:128212033..128212051,-!p1@GATA2!2.28!187.84!GATA2;;chr6:50786591..50786614,+!p1@TFAP2B!2.26!182.05!TFAP2B;;chr5:153857778..153857794,-!p1@HAND1!2.19!155.08!HAND1;;chr2:16080635..16080650,+!p4@MYCN!2.18!149.07!MYCN;;chr5:50679228..50679288,+!p1@ISL1!2.14!135.64!ISL1;;chr4:41750731..41750748,-!p1@PHOX2B!2.04!109.65!PHOX2B;;chr2:74741569..74741620,+!p1@TLX2!1.99!97.20!TLX2;;chr4:174451350..174451363,-!p3@HAND2!1.97!93.37!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.95!235.35!TWIST1;;chr14:36003363..36003378,+!p1@INSM2!1.95!88.35!INSM2;;chr10:8096631..8096660,+!p1@GATA3!1.90!95.01!GATA3;;chr2:16082395..16082415,+!p6@MYCN!1.85!70.33!MYCN;;chr2:16080823..16080836,+!p5@MYCN!1.84!67.93!MYCN;;chr13:100634031..100634045,+!p1@ZIC2!1.79!60.72!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.77!57.44!SOX11;;chr13:100623375..100623425,-!p1@ZIC5!1.68!46.63!ZIC5;;chr6:50786571..50786590,+!p2@TFAP2B!1.65!43.90!TFAP2B;;chr2:16082094..16082106,+!p7@MYCN!1.65!43.47!MYCN;;chr4:174450089..174450153,-!p2@HAND2!1.63!41.94!HAND2;;chr2:16082418..16082429,+!p8@MYCN!1.63!41.28!MYCN;;chr8:40755333..40755352,-!p1@ZMAT4!1.61!40.19!ZMAT4;;chr1:214161272..214161322,+!p1@PROX1!1.60!53.84!PROX1;;chr6:50786547..50786564,+!p3@TFAP2B!1.57!35.82!TFAP2B;;chr6:50789717..50789729,+!p4@TFAP2B!1.56!35.49!TFAP2B;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.96!PRRX2;;chr4:41750839..41750850,-!p2@PHOX2B!1.53!33.09!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.77!TCF12;;chr2:2334997..2335053,-!p1@MYT1L!1.48!29.27!MYT1L;;chr13:100634004..100634025,+!p2@ZIC2!1.48!28.94!ZIC2;;chr11:8102749..8102769,+!p2@TUB!1.47!54.60!TUB;;chr2:25475120..25475176,-!p2@DNMT3A!1.47!38.00!DNMT3A;;chr18:52989031..52989079,-!p2@TCF4!1.46!63.89!TCF4;;chr10:8096772..8096787,+!p2@GATA3!1.45!32.22!GATA3;;chr7:35293685..35293718,-!p1@TBX20!1.43!25.99!TBX20;;chr3:128206762..128206781,-!p2@GATA2!1.42!151.58!GATA2;;chr5:153857800..153857812,-!p2@HAND1!1.42!25.34!HAND1;;chr2:74741642..74741658,+!p2@TLX2!1.41!24.46!TLX2;;chr17:46622440..46622477,-!p5@HOXB2!1.38!25.66!HOXB2;;chr18:52969674..52969685,-!p24@TCF4!1.38!23.04!TCF4;;chr21:47063625..47063658,+!p1@PCBP3!1.37!95.01!PCBP3;;chr4:41750922..41750939,-!p4@PHOX2B!1.36!22.17!PHOX2B;;chr19:9609272..9609297,-!p1@ZNF560!1.36!21.95!ZNF560;;chr13:37494365..37494381,-!p1@SMAD9!1.35!36.69!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.12!ZNF711;;chr16:67197654..67197716,+!p3@HSF4!1.35!21.62!HSF4;;chr2:2328725..2328739,-!p5@MYT1L!1.34!21.08!MYT1L;;chr17:59477233..59477263,+!p1@TBX2!1.32!59.85!TBX2;;chr11:63684602..63684664,-!p1@RCOR2!1.30!37.02!RCOR2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.29!18.46!PEG3;;chr1:151032922..151032951,+!p2@MLLT11!1.28!29.81!MLLT11;;chr17:53342311..53342400,+!p1@HLF!1.28!20.75!HLF;;chr17:41623692..41623715,-!p1@ETV4!1.25!70.11!ETV4;;chr11:8102846..8102892,+!p1@TUB!1.24!22.93!TUB;;chr9:14314131..14314147,-!p2@NFIB!1.23!87.80!NFIB;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.38!BCL11A;;chr10:70320074..70320106,+!p1@TET1!1.23!32.11!TET1;;chr9:77112244..77112262,+!p1@RORB!1.23!17.69!RORB;;chr5:170736243..170736279,+!p1@TLX3!1.23!16.16!TLX3;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.62!ASCL1;;chr17:59477197..59477212,+!p2@TBX2!1.19!24.90!TBX2;;chr4:81118647..81118666,+!p1@PRDM8!1.19!19.00!PRDM8;;chr2:219849897..219849928,-!p2@FEV!1.19!14.52!FEV;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.60!GATA3;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.17!131.16!ZNF595;;chr18:56532100..56532130,+!p1@ZNF532!1.16!24.90!ZNF532;;chr18:55102628..55102646,+!p2@ONECUT2!1.16!13.43!ONECUT2;;chr2:219849805..219849819,-!p3@FEV!1.16!13.43!FEV;;chr12:54447637..54447659,+!p4@HOXC4!1.16!13.43!HOXC4;;chr4:41750793..41750804,-!p5@PHOX2B!1.15!13.11!PHOX2B;;chr5:150284532..150284549,-!p1@ZNF300!1.13!26.10!ZNF300;;chr4:299227..299272,-!p1@ZNF732!1.13!12.45!ZNF732;;chr18:56531584..56531646,+!p4@ZNF532!1.12!16.27!ZNF532;;chr12:54447599..54447630,+!p3@HOXC4!1.12!14.96!HOXC4;;chr2:45168997..45169020,+!p4@SIX3!1.12!12.12!SIX3;;chr2:166326200..166326216,+!p1@CSRNP3!1.11!17.26!CSRNP3;;chr2:176994408..176994492,+!p1@HOXD8!1.11!12.01!HOXD8;;chr10:50604121..50604142,-!p1@DRGX!1.11!11.79!DRGX;;chr1:151032860..151032918,+!p1@MLLT11!1.10!137.71!MLLT11;;chr3:40547564..40547616,+!p1@ZNF620!1.10!16.49!ZNF620;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.36!HOXC9;;chrY:21906594..21906622,-!p1@KDM5D!1.09!11.36!KDM5D;;chr18:55102598..55102623,+!p1@ONECUT2!1.09!11.36!ONECUT2;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.28!TBX3;;chr19:12163769..12163798,-!p1@ZNF878!1.08!14.42!ZNF878;;chr10:131762504..131762555,-!p1@EBF3!1.08!11.03!EBF3;;chr6:50786631..50786635,+!p11@TFAP2B!1.08!11.03!TFAP2B;;chr19:22817119..22817145,+!p1@ZNF492!1.07!18.13!ZNF492;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.67!HOXB2;;chr7:19185475..19185487,-!p1@FERD3L!1.07!10.70!FERD3L;;chr12:85673977..85674015,+!p1@ALX1!1.06!10.59!ALX1;;chr13:100634130..100634143,+!p3@ZIC2!1.06!10.48!ZIC2;;chrX:84498989..84499003,+!p1@ZNF711!1.05!13.98!ZNF711;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.27!TBX3;;chr11:8102819..8102845,+!p3@TUB!1.04!12.56!TUB;;chr16:73092898..73092931,-!p1@ZFHX3!1.03!37.79!ZFHX3;;chr19:38042240..38042309,+!p2@ZNF540!1.03!15.07!ZNF540;;chr2:16082384..16082391,+!p9@MYCN!1.03!9.61!MYCN;;chr2:5832493..5832507,+!p2@SOX11!1.02!9.50!SOX11;;chr2:60780753..60780800,-!p1@BCL11A!1.01!46.85!BCL11A;;chr8:60031682..60031710,-!p2@TOX!1.01!15.07!TOX;;chr9:132427972..132428056,+!p1@PRRX2!1.01!12.23!PRRX2;;chr4:41750860..41750867,-!p8@PHOX2B!1.01!9.17!PHOX2B;;chr7:19157043..19157088,-!p2@TWIST1!1.00!23.26!TWIST1;;chr10:8100691..8100732,+!p5@GATA3!1.00!8.96!GATA3;;chr19:20188776..20188826,+!p1@ZNF90!0.99!24.14!ZNF90;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.89!ZNF662;;chr6:20402102..20402152,+!p1@E2F3!0.98!35.60!E2F3;;chr13:72441315..72441454,-!p1@DACH1!0.98!17.26!DACH1;;chr8:28748099..28748141,+!p2@HMBOX1!0.97!26.76!HMBOX1;;chr13:100638100..100638115,+!p4@ZIC2!0.97!8.41!ZIC2;;chr11:66188503..66188511,+!p1@NPAS4!0.97!8.30!NPAS4;;chr7:63505799..63505904,+!p1@ZNF727!0.96!8.08!ZNF727;;chr9:14314106..14314119,-!p5@NFIB!0.95!14.52!NFIB;;chr20:62795799..62795819,+!p1@MYT1!0.95!7.97!MYT1;;chr2:74740569..74740580,+!p4@TLX2!0.95!7.86!TLX2;;chr5:170736216..170736238,+!p2@TLX3!0.95!7.86!TLX3;;chr9:14313893..14313908,-!p7@NFIB!0.94!11.36!NFIB;;chr8:30890810..30890880,-!p1@PURG!0.94!7.75!PURG;;chr12:115121770..115121781,-!p4@TBX3!0.94!7.75!TBX3;;chr2:2328741..2328756,-!p8@MYT1L!0.94!7.75!MYT1L;;chr4:41750895..41750904,-!p6@PHOX2B!0.94!7.75!PHOX2B;;chr2:74726710..74726736,-!p3@LBX2!0.94!7.64!LBX2;;chr7:19185493..19185503,-!p2@FERD3L!0.94!7.64!FERD3L;;chr20:32274179..32274213,-!p1@E2F1!0.93!51.66!E2F1;;chr18:53257027..53257052,-!p3@TCF4!0.93!31.02!TCF4;;chr5:153857819..153857824,-!p3@HAND1!0.93!7.54!HAND1;;chr1:153940354..153940395,+!p1@CREB3L4!0.92!30.47!CREB3L4;;chr1:247171347..247171366,-!p2@ZNF695!0.92!13.65!ZNF695;;chr3:44626446..44626477,+!p1@ZNF660!0.92!13.54!ZNF660;;chrX:131624056..131624069,-!p2@MBNL3!0.92!10.05!MBNL3;;chr2:25475094..25475112,-!p3@DNMT3A!0.91!7.21!DNMT3A;;chr19:37096139..37096170,-!p2@ZNF529!0.90!20.20!ZNF529;;chr3:126076264..126076305,-!p2@KLF15!0.90!9.83!KLF15;;chr19:9609247..9609262,-!p2@ZNF560!0.90!6.99!ZNF560;;chr17:41277372..41277418,-!p1@BRCA1!0.89!25.77!BRCA1;;chr9:128509663..128509715,+!p1@PBX3!0.89!24.03!PBX3;;chr19:38720294..38720348,-!p1@DPF1!0.89!8.63!DPF1;;chr19:57183114..57183145,-!p1@ZNF835!0.89!7.64!ZNF835;;chr19:24097675..24097699,+!p1@ZNF726!0.88!23.15!ZNF726;;chr19:57901326..57901385,+!p2@ZNF548!0.88!16.49!ZNF548;;chr2:71127699..71127744,+!p1@VAX2!0.88!13.87!VAX2;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.66!ZNF177;;chr3:126076242..126076257,-!p1@KLF15!0.87!8.19!KLF15;;chr2:2335109..2335134,-!p2@MYT1L!0.87!6.33!MYT1L;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.15!CREB5;;chr10:44070016..44070069,-!p1@ZNF239!0.86!19.66!ZNF239;;chr8:80679993..80680011,-!p1@HEY1!0.86!9.17!HEY1;;chr4:8873716..8873738,-!p2@HMX1!0.86!6.22!HMX1;;chr19:53758058..53758088,-!p2@ZNF677!0.85!21.08!ZNF677;;chr9:114287433..114287513,+!p1@ZNF483!0.85!16.38!ZNF483;;chr19:56988677..56988729,-!p1@ZNF667!0.85!11.03!ZNF667;;chr8:60031762..60031803,-!p3@TOX!0.85!9.17!TOX;;chr6:108977520..108977534,+!p7@FOXO3!0.85!6.12!FOXO3;;chr1:43148625..43148710,+!p3@YBX1!0.84!11.03!YBX1;;chr5:178368186..178368238,+!p1@ZNF454!0.84!10.92!ZNF454;;chr19:44455368..44455396,+!p1@ZNF221!0.83!20.75!ZNF221;;chr12:133706820..133706881,-!p1@ZNF891!0.83!12.56!ZNF891;;chr6:31869828..31869880,-!p1@ZBTB12!0.83!11.25!ZBTB12;;chr19:11750566..11750627,+!p1@ZNF833P!0.83!7.97!ZNF833P;;chr19:38183138..38183157,-!p2@ZNF781!0.83!5.79!ZNF781;;chr1:214161619..214161629,+!p5@PROX1!0.83!5.79!PROX1;;chr2:45168959..45168990,+!p6@SIX3!0.83!5.79!SIX3;;chr19:9695169..9695188,-!p1@ZNF121!0.82!105.82!ZNF121;;chr5:176738887..176738934,-!p1@MXD3!0.82!40.63!MXD3;;chr2:60778035..60778060,-!p4@BCL11A!0.82!6.77!BCL11A;;chr3:52002412..52002433,-!p7@PCBP4!0.82!5.68!PCBP4;;chr13:37494275..37494304,-!p2@SMAD9!0.82!5.68!SMAD9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.82!5.57!HOXC5;;chr2:219850049..219850060,-!p8@FEV!0.82!5.57!FEV;;chr2:219850277..219850288,-!p9@FEV!0.82!5.57!FEV;;chr9:77112225..77112238,+!p2@RORB!0.81!5.46!RORB;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.46!TCF12;;chr19:20959098..20959117,+!p1@ZNF66P!0.80!23.70!ZNF66P;;chr19:22034809..22034878,-!p2@ZNF43!0.80!20.20!ZNF43;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.77!MEIS1;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.78!NR2F1;;chr6:50786057..50786069,+!p9@TFAP2B!0.80!5.35!TFAP2B;;chr13:37494248..37494260,-!p3@SMAD9!0.80!5.35!SMAD9;;chr3:141105235..141105307,+!p7@ZBTB38!0.80!5.35!ZBTB38;;chr16:67197334..67197362,+!p8@HSF4!0.80!5.24!HSF4;;chr10:111967345..111967422,+!p1@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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNH-12.CNhs11811.10555-107I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10555-107I6 | |id=FF:10555-107I6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100932 | |is_a=EFO:0002091;;FF:0000210;;FF:0100932 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11811 | |||
|library_id_phase_based=2:CNhs11811 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10555 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10555 | |||
|name=neuroblastoma cell line:NH-12 | |name=neuroblastoma cell line:NH-12 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11811,LSID829,release010,COMPLETED | |profile_hcage=CNhs11811,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=64.46405 | |rna_weight_ug=64.46405 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2108 | |sample_cell_catalog=RCB2108 | ||
|sample_cell_line=NH-12 | |sample_cell_line=NH-12 | ||
Line 84: | Line 100: | ||
|top_motifs=NANOG:3.06072828356;CDC5L:2.68503145651;AHR_ARNT_ARNT2:2.55827971502;TFDP1:2.32595834977;FOXM1:2.26868177485;SOX{8,9,10}:2.16957882681;NFY{A,B,C}:2.08171766878;GFI1:2.08066240095;ZNF143:1.98895330292;AIRE:1.98372237459;BREu{core}:1.95372070878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.87348880384;E2F1..5:1.77334434148;PITX1..3:1.69081497793;NKX6-1,2:1.6701953805;NKX2-3_NKX2-5:1.60518975886;NKX2-1,4:1.59487773657;ONECUT1,2:1.56258881882;OCT4_SOX2{dimer}:1.5613611231;ZIC1..3:1.53264195542;ELK1,4_GABP{A,B1}:1.5020259606;NRF1:1.47795389252;ADNP_IRX_SIX_ZHX:1.46227321295;BPTF:1.41909124962;LHX3,4:1.39390078849;ARID5B:1.38986047767;PATZ1:1.38474815911;MED-1{core}:1.36569693884;PAX4:1.34501428063;TOPORS:1.32774594072;PRRX1,2:1.30815215812;RREB1:1.29641200194;FOXD3:1.27368516805;PAX6:1.26600537535;YY1:1.2442323653;FOXP1:1.22306239629;HOXA9_MEIS1:1.19943426712;ZFP161:1.19449939563;REST:1.18239781868;bHLH_family:1.09457018928;PBX1:1.05969648835;PAX3,7:1.05319881479;CREB1:1.04066302641;PAX5:1.03751290478;ATF4:1.02236333565;EVI1:1.01743595439;PAX1,9:0.994496133188;ZBTB16:0.990569921092;VSX1,2:0.975071922134;POU1F1:0.959753544172;POU6F1:0.956112614157;CDX1,2,4:0.939401807597;STAT1,3:0.926496987701;FOXA2:0.897504484373;ATF5_CREB3:0.868882450439;FOX{I1,J2}:0.850196719783;LEF1_TCF7_TCF7L1,2:0.83275059817;RBPJ:0.832635827654;GATA4:0.820522573776;PAX8:0.775459059676;CUX2:0.76787459331;EGR1..3:0.764035943703;RFX2..5_RFXANK_RFXAP:0.758311575329;POU3F1..4:0.748172618772;NKX3-1:0.7356915696;HOX{A4,D4}:0.719946042156;SOX5:0.718876623471;JUN:0.698815108915;NR1H4:0.695902615914;SOX17:0.689715086662;ZNF384:0.670183707975;HBP1_HMGB_SSRP1_UBTF:0.667294574771;DBP:0.647060952186;CRX:0.646264667182;NHLH1,2:0.575212674015;MZF1:0.538833845772;TEF:0.502600328911;ATF2:0.498679121044;RFX1:0.476437041196;KLF4:0.440086975027;GFI1B:0.437700008056;GTF2I:0.417015209245;HOX{A6,A7,B6,B7}:0.406408156978;TFAP2B:0.34863308693;HOX{A5,B5}:0.34690139729;EN1,2:0.341369016348;SOX2:0.320425473726;HIC1:0.310039353142;MTE{core}:0.292289694178;IKZF2:0.290838617952;POU2F1..3:0.284376123018;MYB:0.243982272422;HMGA1,2:0.171656060603;TGIF1:0.148590258002;MYFfamily:0.148059579822;PDX1:0.136576771613;ALX1:0.135663937005;MAZ:0.112886036946;PRDM1:0.082741098083;FOXL1:0.0777591368637;TAL1_TCF{3,4,12}:0.0330053912642;UFEwm:0.0277143763887;STAT5{A,B}:0.0275107064308;GATA6:0.0234312746051;HNF1A:-0.0289753292588;HSF1,2:-0.0407188618982;XCPE1{core}:-0.041893910065;POU5F1:-0.128021664543;FOXP3:-0.132110956137;FOXQ1:-0.135094302701;NKX2-2,8:-0.147043896581;FOXN1:-0.163480741142;RORA:-0.172074060326;MEF2{A,B,C,D}:-0.222055455235;IKZF1:-0.233604163749;TBP:-0.273672824668;TP53:-0.278363218574;HIF1A:-0.302503099121;FOX{F1,F2,J1}:-0.304818449988;AR:-0.330911051722;HNF4A_NR2F1,2:-0.343571354159;HES1:-0.369306522224;ZNF238:-0.394298105522;NR3C1:-0.402046959401;FOSL2:-0.409832232652;RXR{A,B,G}:-0.43095136764;ZBTB6:-0.444475424418;GTF2A1,2:-0.498199828138;CEBPA,B_DDIT3:-0.501792342507;NR6A1:-0.5329529984;DMAP1_NCOR{1,2}_SMARC:-0.555074233936;SPIB:-0.574457214805;HLF:-0.601225074501;FOX{D1,D2}:-0.606624675394;MYBL2:-0.6158351459;NFIX:-0.624519890683;NFATC1..3:-0.646310791984;NFIL3:-0.652282038309;SNAI1..3:-0.697301723121;NFKB1_REL_RELA:-0.700569198702;SPI1:-0.701778418933;LMO2:-0.706280971822;FOXO1,3,4:-0.721328194812;RUNX1..3:-0.736469591881;MYOD1:-0.739854355792;ELF1,2,4:-0.7423700616;FOS_FOS{B,L1}_JUN{B,D}:-0.768688064924;TLX1..3_NFIC{dimer}:-0.770282122695;BACH2:-0.773386558457;NFE2:-0.77989221999;T:-0.787938590448;GZF1:-0.790556007738;NFE2L2:-0.79446889925;ZEB1:-0.829169347925;SREBF1,2:-0.848211034073;ESRRA:-0.856205482388;ZNF423:-0.856826544622;ATF6:-0.867476883037;HAND1,2:-0.89239392786;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.89245547841;XBP1:-0.894979218658;TFAP2{A,C}:-0.899646798885;PAX2:-0.928601789174;NANOG{mouse}:-1.02573753008;TLX2:-1.03072982963;GCM1,2:-1.04378650111;SRF:-1.04447260074;ETS1,2:-1.05381069489;IRF1,2:-1.05468601706;NFE2L1:-1.08686308819;IRF7:-1.14617286266;SMAD1..7,9:-1.15830160328;MTF1:-1.1691363149;TEAD1:-1.17730768757;PPARG:-1.24006774566;SP1:-1.24036217266;NKX3-2:-1.25497259452;ESR1:-1.29284700927;TFAP4:-1.31775214376;RXRA_VDR{dimer}:-1.31866005832;MAFB:-1.35773970307;ZNF148:-1.41603441061;GLI1..3:-1.44984771447;HMX1:-1.46438250121;NR5A1,2:-1.56789602299;ALX4:-1.576191786;TFCP2:-1.60712597327;TBX4,5:-1.61855430073;EP300:-1.67095328773;EBF1:-1.80300927269;SPZ1:-1.82674851207;STAT2,4,6:-1.98271143863 | |top_motifs=NANOG:3.06072828356;CDC5L:2.68503145651;AHR_ARNT_ARNT2:2.55827971502;TFDP1:2.32595834977;FOXM1:2.26868177485;SOX{8,9,10}:2.16957882681;NFY{A,B,C}:2.08171766878;GFI1:2.08066240095;ZNF143:1.98895330292;AIRE:1.98372237459;BREu{core}:1.95372070878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.87348880384;E2F1..5:1.77334434148;PITX1..3:1.69081497793;NKX6-1,2:1.6701953805;NKX2-3_NKX2-5:1.60518975886;NKX2-1,4:1.59487773657;ONECUT1,2:1.56258881882;OCT4_SOX2{dimer}:1.5613611231;ZIC1..3:1.53264195542;ELK1,4_GABP{A,B1}:1.5020259606;NRF1:1.47795389252;ADNP_IRX_SIX_ZHX:1.46227321295;BPTF:1.41909124962;LHX3,4:1.39390078849;ARID5B:1.38986047767;PATZ1:1.38474815911;MED-1{core}:1.36569693884;PAX4:1.34501428063;TOPORS:1.32774594072;PRRX1,2:1.30815215812;RREB1:1.29641200194;FOXD3:1.27368516805;PAX6:1.26600537535;YY1:1.2442323653;FOXP1:1.22306239629;HOXA9_MEIS1:1.19943426712;ZFP161:1.19449939563;REST:1.18239781868;bHLH_family:1.09457018928;PBX1:1.05969648835;PAX3,7:1.05319881479;CREB1:1.04066302641;PAX5:1.03751290478;ATF4:1.02236333565;EVI1:1.01743595439;PAX1,9:0.994496133188;ZBTB16:0.990569921092;VSX1,2:0.975071922134;POU1F1:0.959753544172;POU6F1:0.956112614157;CDX1,2,4:0.939401807597;STAT1,3:0.926496987701;FOXA2:0.897504484373;ATF5_CREB3:0.868882450439;FOX{I1,J2}:0.850196719783;LEF1_TCF7_TCF7L1,2:0.83275059817;RBPJ:0.832635827654;GATA4:0.820522573776;PAX8:0.775459059676;CUX2:0.76787459331;EGR1..3:0.764035943703;RFX2..5_RFXANK_RFXAP:0.758311575329;POU3F1..4:0.748172618772;NKX3-1:0.7356915696;HOX{A4,D4}:0.719946042156;SOX5:0.718876623471;JUN:0.698815108915;NR1H4:0.695902615914;SOX17:0.689715086662;ZNF384:0.670183707975;HBP1_HMGB_SSRP1_UBTF:0.667294574771;DBP:0.647060952186;CRX:0.646264667182;NHLH1,2:0.575212674015;MZF1:0.538833845772;TEF:0.502600328911;ATF2:0.498679121044;RFX1:0.476437041196;KLF4:0.440086975027;GFI1B:0.437700008056;GTF2I:0.417015209245;HOX{A6,A7,B6,B7}:0.406408156978;TFAP2B:0.34863308693;HOX{A5,B5}:0.34690139729;EN1,2:0.341369016348;SOX2:0.320425473726;HIC1:0.310039353142;MTE{core}:0.292289694178;IKZF2:0.290838617952;POU2F1..3:0.284376123018;MYB:0.243982272422;HMGA1,2:0.171656060603;TGIF1:0.148590258002;MYFfamily:0.148059579822;PDX1:0.136576771613;ALX1:0.135663937005;MAZ:0.112886036946;PRDM1:0.082741098083;FOXL1:0.0777591368637;TAL1_TCF{3,4,12}:0.0330053912642;UFEwm:0.0277143763887;STAT5{A,B}:0.0275107064308;GATA6:0.0234312746051;HNF1A:-0.0289753292588;HSF1,2:-0.0407188618982;XCPE1{core}:-0.041893910065;POU5F1:-0.128021664543;FOXP3:-0.132110956137;FOXQ1:-0.135094302701;NKX2-2,8:-0.147043896581;FOXN1:-0.163480741142;RORA:-0.172074060326;MEF2{A,B,C,D}:-0.222055455235;IKZF1:-0.233604163749;TBP:-0.273672824668;TP53:-0.278363218574;HIF1A:-0.302503099121;FOX{F1,F2,J1}:-0.304818449988;AR:-0.330911051722;HNF4A_NR2F1,2:-0.343571354159;HES1:-0.369306522224;ZNF238:-0.394298105522;NR3C1:-0.402046959401;FOSL2:-0.409832232652;RXR{A,B,G}:-0.43095136764;ZBTB6:-0.444475424418;GTF2A1,2:-0.498199828138;CEBPA,B_DDIT3:-0.501792342507;NR6A1:-0.5329529984;DMAP1_NCOR{1,2}_SMARC:-0.555074233936;SPIB:-0.574457214805;HLF:-0.601225074501;FOX{D1,D2}:-0.606624675394;MYBL2:-0.6158351459;NFIX:-0.624519890683;NFATC1..3:-0.646310791984;NFIL3:-0.652282038309;SNAI1..3:-0.697301723121;NFKB1_REL_RELA:-0.700569198702;SPI1:-0.701778418933;LMO2:-0.706280971822;FOXO1,3,4:-0.721328194812;RUNX1..3:-0.736469591881;MYOD1:-0.739854355792;ELF1,2,4:-0.7423700616;FOS_FOS{B,L1}_JUN{B,D}:-0.768688064924;TLX1..3_NFIC{dimer}:-0.770282122695;BACH2:-0.773386558457;NFE2:-0.77989221999;T:-0.787938590448;GZF1:-0.790556007738;NFE2L2:-0.79446889925;ZEB1:-0.829169347925;SREBF1,2:-0.848211034073;ESRRA:-0.856205482388;ZNF423:-0.856826544622;ATF6:-0.867476883037;HAND1,2:-0.89239392786;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.89245547841;XBP1:-0.894979218658;TFAP2{A,C}:-0.899646798885;PAX2:-0.928601789174;NANOG{mouse}:-1.02573753008;TLX2:-1.03072982963;GCM1,2:-1.04378650111;SRF:-1.04447260074;ETS1,2:-1.05381069489;IRF1,2:-1.05468601706;NFE2L1:-1.08686308819;IRF7:-1.14617286266;SMAD1..7,9:-1.15830160328;MTF1:-1.1691363149;TEAD1:-1.17730768757;PPARG:-1.24006774566;SP1:-1.24036217266;NKX3-2:-1.25497259452;ESR1:-1.29284700927;TFAP4:-1.31775214376;RXRA_VDR{dimer}:-1.31866005832;MAFB:-1.35773970307;ZNF148:-1.41603441061;GLI1..3:-1.44984771447;HMX1:-1.46438250121;NR5A1,2:-1.56789602299;ALX4:-1.576191786;TFCP2:-1.60712597327;TBX4,5:-1.61855430073;EP300:-1.67095328773;EBF1:-1.80300927269;SPZ1:-1.82674851207;STAT2,4,6:-1.98271143863 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10555-107I6;search_select_hide=table117:FF:10555-107I6 | |||
}} | }} |
Latest revision as of 14:29, 3 June 2020
Name: | neuroblastoma cell line:NH-12 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11811 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11811
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11811
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.22 |
10 | 10 | 0.309 |
100 | 100 | 0.913 |
101 | 101 | 0.549 |
102 | 102 | 0.739 |
103 | 103 | 0.175 |
104 | 104 | 0.517 |
105 | 105 | 0.406 |
106 | 106 | 0.00363 |
107 | 107 | 0.0196 |
108 | 108 | 0.678 |
109 | 109 | 0.0211 |
11 | 11 | 0.0948 |
110 | 110 | 0.268 |
111 | 111 | 0.655 |
112 | 112 | 0.105 |
113 | 113 | 0.691 |
114 | 114 | 0.0894 |
115 | 115 | 0.936 |
116 | 116 | 0.344 |
117 | 117 | 0.214 |
118 | 118 | 0.68 |
119 | 119 | 0.328 |
12 | 12 | 0.588 |
120 | 120 | 0.233 |
121 | 121 | 0.972 |
122 | 122 | 0.941 |
123 | 123 | 0.251 |
124 | 124 | 0.472 |
125 | 125 | 0.819 |
126 | 126 | 0.0746 |
127 | 127 | 0.166 |
128 | 128 | 0.047 |
129 | 129 | 0.167 |
13 | 13 | 0.0804 |
130 | 130 | 0.612 |
131 | 131 | 0.338 |
132 | 132 | 0.805 |
133 | 133 | 0.558 |
134 | 134 | 0.804 |
135 | 135 | 0.45 |
136 | 136 | 0.565 |
137 | 137 | 0.369 |
138 | 138 | 0.986 |
139 | 139 | 0.426 |
14 | 14 | 0.614 |
140 | 140 | 0.383 |
141 | 141 | 0.615 |
142 | 142 | 0.717 |
143 | 143 | 0.0597 |
144 | 144 | 0.812 |
145 | 145 | 0.152 |
146 | 146 | 0.605 |
147 | 147 | 0.547 |
148 | 148 | 0.0153 |
149 | 149 | 0.064 |
15 | 15 | 0.206 |
150 | 150 | 0.266 |
151 | 151 | 0.337 |
152 | 152 | 0.0181 |
153 | 153 | 0.723 |
154 | 154 | 0.942 |
155 | 155 | 0.491 |
156 | 156 | 0.637 |
157 | 157 | 0.398 |
158 | 158 | 0.109 |
159 | 159 | 0.00873 |
16 | 16 | 0.106 |
160 | 160 | 0.374 |
161 | 161 | 0.919 |
162 | 162 | 0.747 |
163 | 163 | 0.289 |
164 | 164 | 0.166 |
165 | 165 | 0.178 |
166 | 166 | 0.755 |
167 | 167 | 0.416 |
168 | 168 | 0.0574 |
169 | 169 | 0.0187 |
17 | 17 | 0.114 |
18 | 18 | 0.429 |
19 | 19 | 0.14 |
2 | 2 | 0.224 |
20 | 20 | 0.898 |
21 | 21 | 0.283 |
22 | 22 | 0.142 |
23 | 23 | 0.014 |
24 | 24 | 0.135 |
25 | 25 | 0.76 |
26 | 26 | 0.0536 |
27 | 27 | 0.242 |
28 | 28 | 0.637 |
29 | 29 | 0.213 |
3 | 3 | 0.173 |
30 | 30 | 0.302 |
31 | 31 | 0.576 |
32 | 32 | 0.00294 |
33 | 33 | 0.348 |
34 | 34 | 0.415 |
35 | 35 | 0.929 |
36 | 36 | 0.799 |
37 | 37 | 0.0782 |
38 | 38 | 0.285 |
39 | 39 | 0.147 |
4 | 4 | 0.545 |
40 | 40 | 0.204 |
41 | 41 | 0.174 |
42 | 42 | 0.491 |
43 | 43 | 0.134 |
44 | 44 | 0.13 |
45 | 45 | 0.246 |
46 | 46 | 0.185 |
47 | 47 | 0.458 |
48 | 48 | 0.211 |
49 | 49 | 0.304 |
5 | 5 | 0.156 |
50 | 50 | 0.483 |
51 | 51 | 0.427 |
52 | 52 | 0.105 |
53 | 53 | 0.884 |
54 | 54 | 0.188 |
55 | 55 | 0.107 |
56 | 56 | 0.355 |
57 | 57 | 0.906 |
58 | 58 | 0.287 |
59 | 59 | 0.0204 |
6 | 6 | 0.971 |
60 | 60 | 0.0219 |
61 | 61 | 0.282 |
62 | 62 | 0.149 |
63 | 63 | 0.18 |
64 | 64 | 0.669 |
65 | 65 | 0.119 |
66 | 66 | 0.47 |
67 | 67 | 0.872 |
68 | 68 | 0.134 |
69 | 69 | 0.345 |
7 | 7 | 0.253 |
70 | 70 | 0.0081 |
71 | 71 | 0.0608 |
72 | 72 | 0.225 |
73 | 73 | 0.0213 |
74 | 74 | 0.241 |
75 | 75 | 0.333 |
76 | 76 | 0.973 |
77 | 77 | 0.0425 |
78 | 78 | 0.239 |
79 | 79 | 0.0709 |
8 | 8 | 0.156 |
80 | 80 | 0.0705 |
81 | 81 | 0.434 |
82 | 82 | 0.225 |
83 | 83 | 0.0662 |
84 | 84 | 0.605 |
85 | 85 | 0.0194 |
86 | 86 | 0.409 |
87 | 87 | 0.0227 |
88 | 88 | 0.671 |
89 | 89 | 0.0534 |
9 | 9 | 0.165 |
90 | 90 | 0.364 |
91 | 91 | 0.175 |
92 | 92 | 0.0511 |
93 | 93 | 0.718 |
94 | 94 | 0.223 |
95 | 95 | 0.0528 |
96 | 96 | 0.257 |
97 | 97 | 0.549 |
98 | 98 | 0.635 |
99 | 99 | 0.377 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11811
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100932 neuroblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)