FFCP PHASE1:Mm9::chr5:121459519..121459530,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19894 | |EntrezGene=19894 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=P47708 | |UniProt=P47708 | ||
|association_with_transcript=0bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end | |association_with_transcript=0bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end | ||
|cluster_id=chr5:121459519..121459530,- | |||
|description=CAGE_peak_4_at_Rph3a_5end | |description=CAGE_peak_4_at_Rph3a_5end | ||
|id=chr5:121459519..121459530,- | |id=chr5:121459519..121459530,- | ||
|ontology_enrichment_celltype=CL:0000117!4.64e-19!23;CL:0000337!4.64e-19!23;CL:0000540!2.50e-13!33;CL:0000047!2.50e-13!33;CL:0000031!2.50e-13!33;CL:0000404!2.50e-13!33;CL:0000393!4.35e-10!39;CL:0000211!4.35e-10!39;CL:0000221!1.01e-09!44;CL:0000133!1.01e-09!44;CL:0002319!3.57e-09!43;CL:0000055!7.04e-07!50 | |ontology_enrichment_celltype=CL:0000117!4.64e-19!23;CL:0000337!4.64e-19!23;CL:0000540!2.50e-13!33;CL:0000047!2.50e-13!33;CL:0000031!2.50e-13!33;CL:0000404!2.50e-13!33;CL:0000393!4.35e-10!39;CL:0000211!4.35e-10!39;CL:0000221!1.01e-09!44;CL:0000133!1.01e-09!44;CL:0002319!3.57e-09!43;CL:0000055!7.04e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.03e-21,23;CL:0000337,1.03e-21,23;CL:0000540,6.59e-14,33;CL:0000047,6.59e-14,33;CL:0000031,6.59e-14,33;CL:0000404,6.59e-14,33;CL:0000393,3.67e-11,39;CL:0000211,3.67e-11,39;CL:0002319,9.19e-10,43;CL:0000221,1.87e-09,44;CL:0000133,1.87e-09,44;CL:0002614,1.62e-07,3;CL:0002610,1.98e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.95e-34!63;UBERON:0002346!2.34e-32!71;UBERON:0003075!2.34e-32!71;UBERON:0007284!2.34e-32!71;UBERON:0004121!7.38e-31!102;UBERON:0000924!7.38e-31!102;UBERON:0006601!7.38e-31!102;UBERON:0001049!1.27e-30!52;UBERON:0005068!1.27e-30!52;UBERON:0006241!1.27e-30!52;UBERON:0007135!1.27e-30!52;UBERON:0001017!1.16e-29!73;UBERON:0005743!1.16e-29!73;UBERON:0000073!1.79e-29!75;UBERON:0001016!1.79e-29!75;UBERON:0000955!7.82e-29!50;UBERON:0006238!7.82e-29!50;UBERON:0002616!4.93e-28!49;UBERON:0003056!1.13e-27!49;UBERON:0002020!1.01e-26!34;UBERON:0003080!3.00e-22!40;UBERON:0002791!3.22e-22!29;UBERON:0003528!3.22e-22!29;UBERON:0001893!3.22e-22!29;UBERON:0002780!3.45e-21!39;UBERON:0001890!3.45e-21!39;UBERON:0006240!3.45e-21!39;UBERON:0007811!1.36e-20!86;UBERON:0000153!2.01e-17!94;UBERON:0000956!1.25e-14!21;UBERON:0001869!1.25e-14!21;UBERON:0000203!1.25e-14!21;UBERON:0002619!2.69e-13!17;UBERON:0002021!1.22e-11!10;UBERON:0000411!1.22e-11!10;UBERON:0001950!1.22e-11!10;UBERON:0002420!7.14e-09!8;UBERON:0007245!7.14e-09!8;UBERON:0010009!7.14e-09!8;UBERON:0010011!7.14e-09!8;UBERON:0000454!7.14e-09!8;UBERON:0003076!1.04e-08!12;UBERON:0003057!1.04e-08!12;UBERON:0002298!4.76e-08!6;UBERON:0000025!1.57e-07!114;UBERON:0004111!2.80e-07!122;UBERON:0002240!7.78e-07!6;UBERON:0005174!7.78e-07!6;UBERON:0001137!7.78e-07!6 | |ontology_enrichment_uberon=UBERON:0000033!1.95e-34!63;UBERON:0002346!2.34e-32!71;UBERON:0003075!2.34e-32!71;UBERON:0007284!2.34e-32!71;UBERON:0004121!7.38e-31!102;UBERON:0000924!7.38e-31!102;UBERON:0006601!7.38e-31!102;UBERON:0001049!1.27e-30!52;UBERON:0005068!1.27e-30!52;UBERON:0006241!1.27e-30!52;UBERON:0007135!1.27e-30!52;UBERON:0001017!1.16e-29!73;UBERON:0005743!1.16e-29!73;UBERON:0000073!1.79e-29!75;UBERON:0001016!1.79e-29!75;UBERON:0000955!7.82e-29!50;UBERON:0006238!7.82e-29!50;UBERON:0002616!4.93e-28!49;UBERON:0003056!1.13e-27!49;UBERON:0002020!1.01e-26!34;UBERON:0003080!3.00e-22!40;UBERON:0002791!3.22e-22!29;UBERON:0003528!3.22e-22!29;UBERON:0001893!3.22e-22!29;UBERON:0002780!3.45e-21!39;UBERON:0001890!3.45e-21!39;UBERON:0006240!3.45e-21!39;UBERON:0007811!1.36e-20!86;UBERON:0000153!2.01e-17!94;UBERON:0000956!1.25e-14!21;UBERON:0001869!1.25e-14!21;UBERON:0000203!1.25e-14!21;UBERON:0002619!2.69e-13!17;UBERON:0002021!1.22e-11!10;UBERON:0000411!1.22e-11!10;UBERON:0001950!1.22e-11!10;UBERON:0002420!7.14e-09!8;UBERON:0007245!7.14e-09!8;UBERON:0010009!7.14e-09!8;UBERON:0010011!7.14e-09!8;UBERON:0000454!7.14e-09!8;UBERON:0003076!1.04e-08!12;UBERON:0003057!1.04e-08!12;UBERON:0002298!4.76e-08!6;UBERON:0000025!1.57e-07!114;UBERON:0004111!2.80e-07!122;UBERON:0002240!7.78e-07!6;UBERON:0005174!7.78e-07!6;UBERON:0001137!7.78e-07!6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.72e-45,54;UBERON:0001049,1.21e-41,52;UBERON:0005068,1.21e-41,52;UBERON:0006241,1.21e-41,52;UBERON:0007135,1.21e-41,52;UBERON:0002346,8.75e-39,64;UBERON:0003075,8.75e-39,64;UBERON:0007284,8.75e-39,64;UBERON:0001017,5.51e-38,73;UBERON:0001016,9.48e-37,75;UBERON:0002020,9.90e-37,34;UBERON:0002616,6.91e-34,46;UBERON:0000955,5.15e-33,47;UBERON:0006238,5.15e-33,47;UBERON:0010371,5.39e-33,73;UBERON:0004121,2.67e-32,95;UBERON:0000924,2.67e-32,95;UBERON:0006601,2.67e-32,95;UBERON:0003528,3.10e-31,29;UBERON:0002791,3.10e-31,29;UBERON:0001893,3.10e-31,29;UBERON:0003080,2.68e-28,40;UBERON:0003056,6.79e-28,49;UBERON:0002780,1.69e-26,39;UBERON:0001890,1.69e-26,39;UBERON:0006240,1.69e-26,39;UBERON:0010314,1.75e-24,92;UBERON:0002021,8.23e-21,10;UBERON:0000411,8.23e-21,10;UBERON:0001950,8.23e-21,10;UBERON:0002619,3.72e-19,17;UBERON:0000956,1.04e-17,21;UBERON:0001869,1.04e-17,21;UBERON:0000203,1.04e-17,21;UBERON:0002420,1.60e-15,8;UBERON:0007245,1.60e-15,8;UBERON:0010009,1.60e-15,8;UBERON:0010011,1.60e-15,8;UBERON:0000454,1.60e-15,8;UBERON:0000025,1.06e-14,114;UBERON:0003076,2.34e-13,12;UBERON:0003057,2.34e-13,12;UBERON:0004111,3.22e-13,122;UBERON:0000369,1.26e-09,5;UBERON:0002435,1.26e-09,5;UBERON:0000204,1.26e-09,5;UBERON:0010082,1.26e-09,5;UBERON:0002950,1.49e-09,4;UBERON:0001891,1.49e-09,4;UBERON:0009616,1.49e-09,4;UBERON:0010286,1.49e-09,4;UBERON:0000483,4.94e-09,174;UBERON:0011216,5.67e-09,194;UBERON:0000119,7.78e-09,176;UBERON:0002240,1.52e-08,6;UBERON:0005174,1.52e-08,6;UBERON:0001137,1.52e-08,6;UBERON:0002038,1.62e-07,3;UBERON:0009663,1.62e-07,3;UBERON:0009661,1.62e-07,3;UBERON:0000125,1.62e-07,3;UBERON:0002308,1.62e-07,3;UBERON:0004684,1.98e-07,3;UBERON:0002275,1.98e-07,3 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,1.5869729378161,0.633831403506179,0,0,0,0,0,0,0,0.622137673850866,0.405017814995072,0,2.57085885963423,2.20868540951614,1.22490799214954,0.862609239164127,1.83843757322004,2.20231761998777,4.34136949489638,5.06901559745603,1.05509030184155,1.18933936683133,1.04182674111352,4.74611098302348,3.37657566019008,3.81995619442025,1.17851434189467,1.56608848879013,0.745597783301202,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0,0,0.150722640552623,0,0.125666591329675,0,0,0,0,0,0,0,2.92780797011547,3.56059401582874,0,0,0,0,4.49371918214468,4.57500602818627,2.01046963380583,6.95297280769106,7.92717917724025,3.1168206683934,2.92034273521964,0,0,0,0.631325567659422,0,0.459804208866946,0.540186389416048,1.05493372485001,1.08858398642125,0.896796041993948,0.562210347358373,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99550902271842,0.720332286654991,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.397912944082302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,6.90367536947505,6.32943107597897,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356737635204141,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0.119372344003136,0,0,9.45669040253599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,4.60325236507177,3.43737308063638,3.60891682921744,6.16574267793578,2.2661816921691,2.02506750069542,3.60256962579376,4.07828168085784,4.65984280576638,0,0,0,0,0,0.367687016900028,0.222246727801615,0,0.320919209591815,0,0.25347929989024,0.377252682772152,0.187283014939765,0.192075457214608,0.114870937911227,0.476293691283074,0,0.192909220463705,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.145346416632329,0,0.25384382367503,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0,0.409231043169689,0,0.192906610981141,0.499621155875892,0,0.429742108096597,0.191288332068843,0,0 | |phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,1.5869729378161,0.633831403506179,0,0,0,0,0,0,0,0.622137673850866,0.405017814995072,0,2.57085885963423,2.20868540951614,1.22490799214954,0.862609239164127,1.83843757322004,2.20231761998777,4.34136949489638,5.06901559745603,1.05509030184155,1.18933936683133,1.04182674111352,4.74611098302348,3.37657566019008,3.81995619442025,1.17851434189467,1.56608848879013,0.745597783301202,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0,0,0.150722640552623,0,0.125666591329675,0,0,0,0,0,0,0,2.92780797011547,3.56059401582874,0,0,0,0,4.49371918214468,4.57500602818627,2.01046963380583,6.95297280769106,7.92717917724025,3.1168206683934,2.92034273521964,0,0,0,0.631325567659422,0,0.459804208866946,0.540186389416048,1.05493372485001,1.08858398642125,0.896796041993948,0.562210347358373,1.55222022443409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99550902271842,0.720332286654991,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.397912944082302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,6.90367536947505,6.32943107597897,0,0,0,0,0,0,0,0,0.404810701674894,0,0,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356737635204141,0.493647061806363,0.304464949114599,0,0,0,0,0,0,0.119372344003136,0,0,9.45669040253599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,4.60325236507177,3.43737308063638,3.60891682921744,6.16574267793578,2.2661816921691,2.02506750069542,3.60256962579376,4.07828168085784,4.65984280576638,0,0,0,0,0,0.367687016900028,0.222246727801615,0,0.320919209591815,0,0.25347929989024,0.377252682772152,0.187283014939765,0.192075457214608,0.114870937911227,0.476293691283074,0,0.192909220463705,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.145346416632329,0,0.25384382367503,0,0,0.407412341537585,0.561142271657738,0.237270036248348,0,0.409231043169689,0,0.192906610981141,0.499621155875892,0,0.429742108096597,0.191288332068843,0,0 | ||
|short_description=p4@Rph3a | |short_description=p4@Rph3a | ||
}} | }} |
Latest revision as of 19:18, 1 October 2015
Short description: | p4@Rph3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rph3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000079204, NM_011286, uc008zil.1_5end |
EntrezGene: | Rph3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.03e-21 | 23 |
neuroblast (sensu Vertebrata) | 1.03e-21 | 23 |
neuron | 6.59e-14 | 33 |
neuronal stem cell | 6.59e-14 | 33 |
neuroblast | 6.59e-14 | 33 |
electrically signaling cell | 6.59e-14 | 33 |
electrically responsive cell | 3.67e-11 | 39 |
electrically active cell | 3.67e-11 | 39 |
neural cell | 9.19e-10 | 43 |
ectodermal cell | 1.87e-09 | 44 |
neurectodermal cell | 1.87e-09 | 44 |
neuron of the substantia nigra | 1.62e-07 | 3 |
raphe nuclei neuron | 1.98e-07 | 3 |