FFCP PHASE1:Hg19::chr3:72428522..72428552,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:72428522..72428552,-
|short_description=p2@RYBP
|description=CAGE_peak_2_at_RYBP_5end
|association_with_transcript=-316bp_to_AF085840_5end
|EntrezGene=234...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23429 | |EntrezGene=23429 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10480 | |HGNC=10480 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-316bp_to_AF085840_5end | |||
|cluster_id=chr3:72428522..72428552,- | |||
|coexpression_cluster_id=C236 | |||
|description=CAGE_peak_2_at_RYBP_5end | |||
|id=chr3:72428522..72428552,- | |||
|ontology_enrichment_celltype=CL:0002057!1.58e-17!42;CL:0000860!9.71e-16!45;CL:0002009!3.97e-11!65;CL:0000766!1.77e-10!76;CL:0002194!1.84e-10!63;CL:0000576!1.84e-10!63;CL:0000040!1.84e-10!63;CL:0000559!1.84e-10!63;CL:0000557!4.07e-10!71;CL:0000839!8.11e-10!70;CL:0000763!2.19e-09!112;CL:0000049!2.19e-09!112;CL:0002032!6.50e-07!165;CL:0000837!6.50e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.87e-19;33!CL:0002057;1.87e-19;33!CL:0000473;2.10e-14;39!CL:0000234;2.10e-14;39!CL:0000576;4.45e-10;48!CL:0000766;3.46e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.97e-20,42;CL:0002057,1.97e-20,42;CL:0000473,8.37e-19,48;CL:0000234,8.37e-19,48;CL:0002009,3.54e-14,61;CL:0002194,2.56e-13,59;CL:0000576,2.56e-13,59;CL:0000040,2.56e-13,59;CL:0000559,2.56e-13,59;CL:0000766,3.13e-13,72;CL:0000557,1.10e-12,67;CL:0000763,3.63e-12,108;CL:0000049,3.63e-12,108;CL:0000839,4.47e-12,66;CL:0002032,7.40e-08,161;CL:0000837,7.40e-08,161;CL:0000738,2.82e-07,136;CL:0000037,5.30e-07,168;CL:0002031,6.46e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.05e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.40e-09!102;UBERON:0003061!2.40e-09!102;UBERON:0002371!1.19e-08!80;UBERON:0002193!7.24e-08!112;UBERON:0001474!2.92e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.53e-11,76;UBERON:0002390,7.84e-11,98;UBERON:0003061,7.84e-11,98;UBERON:0001474,8.60e-10,82;UBERON:0002193,1.18e-08,108;UBERON:0004765,8.60e-08,90;UBERON:0002405,8.99e-08,93;UBERON:0001434,1.28e-07,100 | |||
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| ||
|short_description=p2@RYBP | |||
}} | }} |
Latest revision as of 14:53, 19 September 2015
Short description: | p2@RYBP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RYBP_5end |
Coexpression cluster: | C236_CD14_Neutrophils_Monocytederived_renal_Eosinophils_testis_mesothelioma |
Association with transcript: | -316bp_to_AF085840_5end |
EntrezGene: | RYBP |
HGNC: | 10480 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.97e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.97e-20 | 42 |
defensive cell | 8.37e-19 | 48 |
phagocyte | 8.37e-19 | 48 |
macrophage dendritic cell progenitor | 3.54e-14 | 61 |
monopoietic cell | 2.56e-13 | 59 |
monocyte | 2.56e-13 | 59 |
monoblast | 2.56e-13 | 59 |
promonocyte | 2.56e-13 | 59 |
myeloid leukocyte | 3.13e-13 | 72 |
granulocyte monocyte progenitor cell | 1.10e-12 | 67 |
myeloid cell | 3.63e-12 | 108 |
common myeloid progenitor | 3.63e-12 | 108 |
myeloid lineage restricted progenitor cell | 4.47e-12 | 66 |
hematopoietic oligopotent progenitor cell | 7.40e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.40e-08 | 161 |
leukocyte | 2.82e-07 | 136 |
hematopoietic stem cell | 5.30e-07 | 168 |
hematopoietic lineage restricted progenitor cell | 6.46e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.53e-11 | 76 |
hematopoietic system | 7.84e-11 | 98 |
blood island | 7.84e-11 | 98 |
bone element | 8.60e-10 | 82 |
hemolymphoid system | 1.18e-08 | 108 |
skeletal element | 8.60e-08 | 90 |
immune system | 8.99e-08 | 93 |
skeletal system | 1.28e-07 | 100 |