FFCP PHASE1:Hg19::chr4:71570392..71570414,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:71570392..71570414,+
|short_description=p8@RUFY3
|description=CAGE_peak_8_at_RUFY3_5end
|association_with_transcript=-103bp_to_ENST00000417478_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22902 | |EntrezGene=22902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30285 | |HGNC=30285 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-103bp_to_ENST00000417478_5end | |||
|cluster_id=chr4:71570392..71570414,+ | |||
|description=CAGE_peak_8_at_RUFY3_5end | |||
|id=chr4:71570392..71570414,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.71e-20!140;CL:0000037!3.05e-18!172;CL:0000566!3.05e-18!172;CL:0002031!7.21e-18!124;CL:0002087!1.33e-17!119;CL:0002032!1.23e-15!165;CL:0000837!1.23e-15!165;CL:0000988!1.33e-15!182;CL:0002057!1.18e-13!42;CL:0000860!1.00e-11!45;CL:0000557!1.09e-10!71;CL:0000766!1.77e-09!76;CL:0000839!2.51e-09!70;CL:0002009!4.07e-09!65;CL:0000838!8.51e-09!52;CL:0002194!9.21e-09!63;CL:0000576!9.21e-09!63;CL:0000040!9.21e-09!63;CL:0000559!9.21e-09!63;CL:0000542!1.17e-08!53;CL:0000051!1.17e-08!53;CL:0000763!6.08e-08!112;CL:0000049!6.08e-08!112;CL:0000084!3.49e-07!25;CL:0000827!3.49e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.40e-11;33!CL:0002057;3.40e-11;33!CL:0000576;5.05e-11;48!CL:0002393;1.59e-08;6!CL:0002397;1.59e-08;6!CL:0000766;3.03e-08;69!CL:0000473;6.72e-08;39!CL:0000234;6.72e-08;39!CL:0000784;2.94e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.39e-22,136;CL:0000860,1.84e-18,42;CL:0002057,1.84e-18,42;CL:0000037,2.87e-18,168;CL:0002087,6.02e-17,115;CL:0002031,7.70e-17,120;CL:0000988,1.28e-16,177;CL:0002032,1.97e-15,161;CL:0000837,1.97e-15,161;CL:0000473,2.45e-15,48;CL:0000234,2.45e-15,48;CL:0000557,8.05e-15,67;CL:0000766,3.55e-14,72;CL:0002009,4.33e-14,61;CL:0002194,2.08e-13,59;CL:0000576,2.08e-13,59;CL:0000040,2.08e-13,59;CL:0000559,2.08e-13,59;CL:0000839,1.97e-12,66;CL:0000763,4.32e-11,108;CL:0000049,4.32e-11,108;CL:0002393,3.02e-07,9;CL:0002397,3.02e-07,9;CL:0000784,3.90e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;7.84e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.32e-11!102;UBERON:0003061!2.32e-11!102;UBERON:0002193!6.43e-11!112;UBERON:0001474!2.16e-09!86;UBERON:0002371!2.65e-09!80;UBERON:0000073!7.81e-09!94;UBERON:0001016!7.81e-09!94;UBERON:0005743!1.22e-07!86;UBERON:0001017!2.10e-07!82 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.17e-13,98;UBERON:0003061,1.17e-13,98;UBERON:0002405,1.28e-13,93;UBERON:0002371,2.47e-13,76;UBERON:0001474,7.22e-13,82;UBERON:0002193,2.08e-12,108;UBERON:0004765,4.88e-11,90;UBERON:0001434,3.45e-09,100 | |||
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|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0.602694528023977,0,0.975865597581014,0,0.408001382488506,0,0.572471974262113,0.273748850145768,0.502170558379211,0.229240217243854,0,0.0787107813136792,0.786728553697808,1.15148819429164,1.39334510984468,0,0,0.369754010166788,0.46480320348181,0.284338464974843,0.880801318004542,2.76997704265939,2.80762226458198,1.30206522429511,1.34349284543955,0.32389366601898,0.77272670290256,0.290796477559129,1.51150377475524,0.970336244751265,0.464858073811369,1.6446715520873,0.309706370895104,1.1507695692886,0,0.47296445977717,0.344745680736619,1.29096936716765,4.06279459783025,1.31769637679823,0.545812300115692,0.449446968890169,1.53041946185451,1.60464513538047,2.55734850319616,0.989553900560148,0.997318288108159,0.426224750532694,1.45104619314292,0,1.24564449799115,1.25624332628372,1.0429658368404,0.868755378820466,0,1.84138817993782,2.53169909952708,1.05627643155971,0.212604299965044,1.25795187305026,0.898629049171961,1.05123824989054,1.44653028027372,1.14005097496499,0.79566670879636,0.91332076882317,0,1.09227722252426,0,1.70692089026603,0.400395987036012,0.574752439954483,0.661044872784862,1.90810750907073,2.27685187643779,1.76171156811282,1.91136614062614,1.32171328579026,1.12101712596307,0.526768169550154,0.983548850569165,0.786021525498329,1.23360899399706,0,0.977766799900771,0.473447805734733,1.94826728407911,0.111410456885174,0,0.443067789167242,0,0.128091319725675,0,0.164437904603676,0,0.289803085735052,1.4828656316206,1.87278579662799,1.04535523804977,0.113309342697566,1.53288197440768,0.34362744548263,1.01207876807801,2.54852331459277,0.651083453856419,0.950452044448374,0.752875595388864,1.4078527226986,0,1.18388626022008,0.821127996921047,0.403213486449465,1.06976078313403,0.579297615531196,0,0,0,0.361439152384566,0.50133791063589,0,0,0.486634870302636,0.661743720148475,0.221729397462564,0.351339142772504,0.72038491523742,0,0.370784442784429,0.649094787309367,0.696518949197069,0.132957960518865,1.19245312152671,2.85997455390064,3.71457501329565,0.596287222100115,0,0,2.82653970962005,0,0.275118041940067,0.208994966536811,0.258416759169329,0.71153252537342,0.66944122552934,0.402829317109147,0,0.976248230192678,0,0,0.17859945656816,0.673588117878509,0.450445921933289,0,0,0.366403487860815,1.31780417436063,0,0.436094052142534,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0,0.576175924479999,0.234321431833797,0,0,0.149448680551801,0,0.161872944368132,0.140450806702248,0,0.491337269247072,0,0,0,0,0,0,0,0,0.877955241761676,0.30648779579902,0,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.206105058476878,0.515281080091258,0.18611685633159,0.168776332241266,0,0,0.276149695926898,0,0,0,0.169560592310488,0,0,0.573609190778008,0.853815942907168,0.795178609928912,0.348581828608555,0.621966330092223,0.756962552626885,1.45990943630332,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,2.6487785964879,0.122988438543114,0,0.109750285408626,0,0.201057944823262,0.370353780634118,0,0,0,0.579652024875384,0.117408694235822,0,0,0.570762456703795,0,0,0.492434012174795,0.936017060556951,0,0,0,0.283550194484773,0.0895585227028483,0,0,0.492663237895943,0.616339038092582,0.414656231081544,1.29707958075265,0.6312121671319,0.190493682876507,0,0,1.71072446022705,0.308482478109971,0.600686115687835,0,0.224262168690721,0.87192013766656,0.07333828582095,0,0,0,0,0,0,1.41849132023278,0,0.285955987316295,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0.672510863961164,0.591092280605782,0.431255149719035,0.77005821767849,0.508189248444927,2.60279707715243,0,2.84777651068393,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0,0.315404830067869,0.117141414992713,0,0,1.03473071292505,0,0.184369168541703,0.0868836144680828,0,0,1.44737618286021,0.431428401637234,0.853820462427555,0,0,0,0,0.153461973288062,0.280660094433074,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0,0.200506470303285,0.368323955743585,0.114814448164607,0,0.131124414959424,0,0.308061348417659,0,0,0.316654886678627,1.13733384070897,0.170093705276516,0.647747748306418,0,0,0,0.509752546090077,0,0,0,0.261435451024901,0.512900250232778,0.328014645699706,0.325378394664303,0.515205058238611,0.457847324091717,0.247528499761764,0,0,0,0.386682873168488,0,0.307007349452259,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,0,0,1.40373983744043,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0,0,0.192444225451024,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,1.52927441428475,0,0.476463550915578,0.822724546172388,0.648473311192717,0.540031437238115,0,0.320472213382419,0,0.245040215981032,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| ||
|short_description=p8@RUFY3 | |||
}} | }} |
Latest revision as of 11:02, 18 September 2015
Short description: | p8@RUFY3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RUFY3_5end |
Coexpression cluster: | NA |
Association with transcript: | -103bp_to_ENST00000417478_5end |
EntrezGene: | RUFY3 |
HGNC: | 30285 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.39e-22 | 136 |
classical monocyte | 1.84e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.84e-18 | 42 |
hematopoietic stem cell | 2.87e-18 | 168 |
nongranular leukocyte | 6.02e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 7.70e-17 | 120 |
hematopoietic cell | 1.28e-16 | 177 |
hematopoietic oligopotent progenitor cell | 1.97e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.97e-15 | 161 |
defensive cell | 2.45e-15 | 48 |
phagocyte | 2.45e-15 | 48 |
granulocyte monocyte progenitor cell | 8.05e-15 | 67 |
myeloid leukocyte | 3.55e-14 | 72 |
macrophage dendritic cell progenitor | 4.33e-14 | 61 |
monopoietic cell | 2.08e-13 | 59 |
monocyte | 2.08e-13 | 59 |
monoblast | 2.08e-13 | 59 |
promonocyte | 2.08e-13 | 59 |
myeloid lineage restricted progenitor cell | 1.97e-12 | 66 |
myeloid cell | 4.32e-11 | 108 |
common myeloid progenitor | 4.32e-11 | 108 |
intermediate monocyte | 3.02e-07 | 9 |
CD14-positive, CD16-positive monocyte | 3.02e-07 | 9 |
plasmacytoid dendritic cell | 3.90e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.17e-13 | 98 |
blood island | 1.17e-13 | 98 |
immune system | 1.28e-13 | 93 |
bone marrow | 2.47e-13 | 76 |
bone element | 7.22e-13 | 82 |
hemolymphoid system | 2.08e-12 | 108 |
skeletal element | 4.88e-11 | 90 |
skeletal system | 3.45e-09 | 100 |