FFCP PHASE1:Hg19::chr4:71859258..71859372,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:71859258..71859372,+
|short_description=p1@DCK
|description=CAGE_peak_1_at_DCK_5end
|association_with_transcript=0bp_to_ENST00000503359,ENST00000504730,ENS...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1633 | |EntrezGene=1633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2704 | |HGNC=2704 | ||
|TSSclassifier=strong | |||
|UniProt=D6RG38,D6RCP9,D6RFG8,F5CTF3,P27707 | |UniProt=D6RG38,D6RCP9,D6RFG8,F5CTF3,P27707 | ||
|association_with_transcript=0bp_to_ENST00000503359,ENST00000504730,ENST00000504952,NM_000788,uc003hfx.2,uc011cbb.1_5end | |||
|cluster_id=chr4:71859258..71859372,+ | |||
|description=CAGE_peak_1_at_DCK_5end | |||
|id=chr4:71859258..71859372,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.01e-38!172;CL:0000566!4.01e-38!172;CL:0000988!2.89e-35!182;CL:0002032!6.12e-35!165;CL:0000837!6.12e-35!165;CL:0000738!1.56e-26!140;CL:0002031!1.09e-24!124;CL:0002087!1.81e-24!119;CL:0000542!4.12e-20!53;CL:0000051!4.12e-20!53;CL:0000838!1.40e-19!52;CL:0000763!1.57e-15!112;CL:0000049!1.57e-15!112;CL:0000084!1.20e-10!25;CL:0000827!1.20e-10!25;CL:0000945!8.48e-10!24;CL:0000826!8.48e-10!24;CL:0000236!1.20e-09!14;CL:0000791!1.19e-08!18;CL:0000789!1.19e-08!18;CL:0002420!1.19e-08!18;CL:0002419!1.19e-08!18;CL:0000790!1.19e-08!18;CL:0000839!8.30e-08!70;CL:0000557!2.46e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.21e-12;53!CL:0000084;1.30e-10;25!CL:0000945;7.34e-10;24!CL:0000236;1.43e-09;13!CL:0000791;1.29e-08;18!CL:0000789;1.29e-08;18!CL:0002419;1.29e-08;18!CL:0000988;4.91e-07;177!CL:0000738;7.24e-07;136!CL:0002087;8.21e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.30e-40,168;CL:0000988,2.10e-37,177;CL:0002032,4.09e-37,161;CL:0000837,4.09e-37,161;CL:0000738,1.48e-28,136;CL:0002031,8.78e-27,120;CL:0002087,1.32e-26,115;CL:0000542,4.12e-20,53;CL:0000051,4.12e-20,53;CL:0000838,1.40e-19,52;CL:0000763,3.69e-17,108;CL:0000049,3.69e-17,108;CL:0000084,1.20e-10,25;CL:0000827,1.20e-10,25;CL:0000945,8.48e-10,24;CL:0000826,8.48e-10,24;CL:0000236,1.20e-09,14;CL:0000839,3.57e-09,66;CL:0000791,1.19e-08,18;CL:0000789,1.19e-08,18;CL:0002420,1.19e-08,18;CL:0002419,1.19e-08,18;CL:0000790,1.19e-08,18;CL:0000557,1.25e-08,67;CL:0002194,5.91e-08,59;CL:0000576,5.91e-08,59;CL:0000040,5.91e-08,59;CL:0000559,5.91e-08,59;CL:0002009,6.31e-08,61;CL:0000766,1.33e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000051;1.21e-12;53!CL:0000790;1.29e-08;18 | |||
|ontology_enrichment_disease=DOID:2531!4.23e-16!51;DOID:0060083!4.23e-16!51;DOID:1240!1.11e-13!39;DOID:8692!3.17e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.58e-10;39!DOID:2531;4.53e-10;51!DOID:0060083;4.53e-10;51!DOID:8692;7.14e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.23e-16,51;DOID:0060083,4.23e-16,51;DOID:1240,1.11e-13,39;DOID:8692,3.17e-10,31 | |||
|ontology_enrichment_uberon=UBERON:0001049!7.88e-14!57;UBERON:0005068!7.88e-14!57;UBERON:0006241!7.88e-14!57;UBERON:0007135!7.88e-14!57;UBERON:0007023!4.76e-13!115;UBERON:0002780!6.39e-12!41;UBERON:0001890!6.39e-12!41;UBERON:0006240!6.39e-12!41;UBERON:0003080!9.22e-12!42;UBERON:0001893!9.60e-12!34;UBERON:0002390!1.75e-11!102;UBERON:0003061!1.75e-11!102;UBERON:0002020!2.23e-11!34;UBERON:0003528!2.23e-11!34;UBERON:0002791!2.29e-11!33;UBERON:0002193!2.39e-11!112;UBERON:0001869!2.87e-11!32;UBERON:0001017!7.28e-11!82;UBERON:0000073!8.24e-11!94;UBERON:0001016!8.24e-11!94;UBERON:0002616!1.04e-10!59;UBERON:0005743!3.19e-10!86;UBERON:0002346!5.89e-10!90;UBERON:0000955!2.60e-09!69;UBERON:0006238!2.60e-09!69;UBERON:0003075!5.56e-09!86;UBERON:0007284!5.56e-09!86;UBERON:0000956!1.60e-08!25;UBERON:0000203!1.60e-08!25;UBERON:0002619!3.47e-08!22;UBERON:0001950!5.57e-08!20;UBERON:0003056!3.50e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.43e-10;32!UBERON:0002791;3.11e-10;32!UBERON:0001893;3.58e-10;34!UBERON:0003528;5.51e-10;34!UBERON:0002020;5.51e-10;34!UBERON:0002780;6.17e-09;41!UBERON:0001890;6.17e-09;41!UBERON:0000956;1.69e-08;25!UBERON:0000203;1.69e-08;25!UBERON:0002619;3.57e-08;22!UBERON:0001950;5.54e-08;20!UBERON:0000073;9.30e-08;53!UBERON:0002616;9.30e-08;53 | |||
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| ||
|short_description=p1@DCK | |||
}} | }} |
Latest revision as of 11:31, 18 September 2015
Short description: | p1@DCK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DCK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000503359, ENST00000504730, ENST00000504952, NM_000788, uc003hfx.2, uc011cbb.1_5end |
EntrezGene: | DCK |
HGNC: | 2704 |
UniProt: | D6RG38D6RCP9D6RFG8F5CTF3P27707 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.30e-40 | 168 |
hematopoietic cell | 2.10e-37 | 177 |
hematopoietic oligopotent progenitor cell | 4.09e-37 | 161 |
hematopoietic multipotent progenitor cell | 4.09e-37 | 161 |
leukocyte | 1.48e-28 | 136 |
hematopoietic lineage restricted progenitor cell | 8.78e-27 | 120 |
nongranular leukocyte | 1.32e-26 | 115 |
lymphocyte | 4.12e-20 | 53 |
common lymphoid progenitor | 4.12e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.40e-19 | 52 |
myeloid cell | 3.69e-17 | 108 |
common myeloid progenitor | 3.69e-17 | 108 |
T cell | 1.20e-10 | 25 |
pro-T cell | 1.20e-10 | 25 |
lymphocyte of B lineage | 8.48e-10 | 24 |
pro-B cell | 8.48e-10 | 24 |
B cell | 1.20e-09 | 14 |
myeloid lineage restricted progenitor cell | 3.57e-09 | 66 |
mature alpha-beta T cell | 1.19e-08 | 18 |
alpha-beta T cell | 1.19e-08 | 18 |
immature T cell | 1.19e-08 | 18 |
mature T cell | 1.19e-08 | 18 |
immature alpha-beta T cell | 1.19e-08 | 18 |
granulocyte monocyte progenitor cell | 1.25e-08 | 67 |
monopoietic cell | 5.91e-08 | 59 |
monocyte | 5.91e-08 | 59 |
monoblast | 5.91e-08 | 59 |
promonocyte | 5.91e-08 | 59 |
macrophage dendritic cell progenitor | 6.31e-08 | 61 |
myeloid leukocyte | 1.33e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
neural tube | 5.79e-14 | 56 |
neural rod | 5.79e-14 | 56 |
future spinal cord | 5.79e-14 | 56 |
neural keel | 5.79e-14 | 56 |
regional part of nervous system | 3.92e-13 | 53 |
regional part of brain | 3.92e-13 | 53 |
hematopoietic system | 6.90e-13 | 98 |
blood island | 6.90e-13 | 98 |
adult organism | 8.11e-13 | 114 |
hemolymphoid system | 1.17e-12 | 108 |
regional part of forebrain | 6.39e-12 | 41 |
forebrain | 6.39e-12 | 41 |
anterior neural tube | 6.39e-12 | 41 |
future forebrain | 6.39e-12 | 41 |
telencephalon | 9.60e-12 | 34 |
nervous system | 1.77e-11 | 89 |
brain grey matter | 2.23e-11 | 34 |
gray matter | 2.23e-11 | 34 |
cerebral hemisphere | 2.87e-11 | 32 |
regional part of telencephalon | 4.42e-11 | 32 |
central nervous system | 6.46e-11 | 81 |
brain | 2.29e-09 | 68 |
future brain | 2.29e-09 | 68 |
neurectoderm | 2.82e-09 | 86 |
immune system | 3.89e-09 | 93 |
cerebral cortex | 1.60e-08 | 25 |
pallium | 1.60e-08 | 25 |
neural plate | 2.56e-08 | 82 |
presumptive neural plate | 2.56e-08 | 82 |
regional part of cerebral cortex | 3.47e-08 | 22 |
neocortex | 5.57e-08 | 20 |
pre-chordal neural plate | 3.12e-07 | 61 |
bone marrow | 4.98e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.23e-16 | 51 |
immune system cancer | 4.23e-16 | 51 |
leukemia | 1.11e-13 | 39 |
myeloid leukemia | 3.17e-10 | 31 |